BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034528
(92 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LHP0|ELOF1_ORYSJ Transcription elongation factor 1 homolog OS=Oryza sativa subsp.
japonica GN=Os07g0631100 PE=3 SV=1
Length = 89
Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 77/86 (89%), Positives = 82/86 (95%)
Query: 1 MGKRKSRAKPPPKKRVDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTI 60
MGKRKS AKPPPKKR+DKLDTVFSCPFCNHG+SVECRIDMKNLIGEA C ICQE+FSTT+
Sbjct: 1 MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60
Query: 61 TALTEPIDIYSEWIDECERVNNLEDD 86
ALTEPIDIYSEWIDECERVNN+EDD
Sbjct: 61 NALTEPIDIYSEWIDECERVNNVEDD 86
>sp|Q8LEF3|ELOF1_ARATH Transcription elongation factor 1 homolog OS=Arabidopsis thaliana
GN=At5g46030 PE=2 SV=1
Length = 120
Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 69/82 (84%), Positives = 75/82 (91%)
Query: 1 MGKRKSRAKPPPKKRVDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTI 60
MGKRKSRAKP P KR+DKLDT+FSCPFCNHG+SVEC IDMK+LIG+A C IC+ESFSTTI
Sbjct: 1 MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60
Query: 61 TALTEPIDIYSEWIDECERVNN 82
TALTE IDIYSEWIDECERVN
Sbjct: 61 TALTEAIDIYSEWIDECERVNT 82
>sp|P36053|ELF1_YEAST Transcription elongation factor 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ELF1 PE=1 SV=1
Length = 145
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 55/82 (67%)
Query: 1 MGKRKSRAKPPPKKRVDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTI 60
MGKRK + P K+ V KLDT F+C FCNH SV C +D KN IG C IC +SF T I
Sbjct: 1 MGKRKKSTRKPTKRLVQKLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSFQTRI 60
Query: 61 TALTEPIDIYSEWIDECERVNN 82
+L++P+D+YS+W D E VN+
Sbjct: 61 NSLSQPVDVYSDWFDAVEEVNS 82
>sp|O13868|ELOF1_SCHPO Transcription elongation factor 1 homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC1B3.02c PE=1
SV=1
Length = 107
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 61/96 (63%), Gaps = 7/96 (7%)
Query: 1 MGKRKSRAKPPPKKRVDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTI 60
MGKRK++AK PK+R LDT F+C FCNH SV C +D ++ +G C IC +S I
Sbjct: 1 MGKRKAKAKVKPKRRAPPLDTTFTCLFCNHEKSVSCSLDKQSGVGNLHCKICGQSHQCLI 60
Query: 61 TALTEPIDIYSEWIDECE-------RVNNLEDDGAY 89
TAL+ PID+YS+WID C+ V+N+ D AY
Sbjct: 61 TALSAPIDVYSDWIDACDAVANQAKEVDNINDQEAY 96
>sp|Q9XVZ8|ELOF1_CAEEL Transcription elongation factor 1 homolog OS=Caenorhabditis
elegans GN=Y54G11A.11 PE=3 SV=1
Length = 84
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 1 MGKRKSRAKPPPK-KRVDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTT 59
MGKRKS+ K P K K V LDT F+CPFCNH E ++D + +G C +C E F T
Sbjct: 1 MGKRKSKRKAPTKAKAVMPLDTQFNCPFCNHERVCEVKMDREKNVGYISCRVCSEDFQTN 60
Query: 60 ITALTEPIDIYSEWIDECERVNN 82
I L+EPID+YS+W+D CE+ NN
Sbjct: 61 INYLSEPIDVYSDWVDACEQANN 83
>sp|Q8MQI6|ELOF1_DROME Transcription elongation factor 1 homolog OS=Drosophila
melanogaster GN=CG40228 PE=1 SV=1
Length = 82
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Query: 1 MGKRKSRAKPPPKKR-VDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTT 59
MG+RKS+ KPPPK++ ++ LD F+CPFCNH S E ++D + C +C E F T
Sbjct: 1 MGRRKSKRKPPPKRKNIEPLDQQFNCPFCNHEKSCEVKMDKSRNTAKITCRVCLEDFQTG 60
Query: 60 ITALTEPIDIYSEWIDECERVN 81
I L+EPID+Y++W+D CE N
Sbjct: 61 INFLSEPIDVYNDWVDACETAN 82
>sp|Q9U501|ELOF1_MANSE Transcription elongation factor 1 homolog OS=Manduca sexta PE=3
SV=1
Length = 82
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 1 MGKRKSRAKPPPKKR-VDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTT 59
MG+RKS+ KPPPK++ ++ LD F+CPFCNH S E ++D C +C E F TT
Sbjct: 1 MGRRKSKRKPPPKRKAIEPLDQQFNCPFCNHEKSCEVKMDRAKNTAMIQCTVCLEDFHTT 60
Query: 60 ITALTEPIDIYSEWIDECERVN 81
L+EPID+Y++W+D CE N
Sbjct: 61 TNVLSEPIDVYNDWVDACESAN 82
>sp|Q54KR5|ELOF1_DICDI Transcription elongation factor 1 homolog OS=Dictyostelium
discoideum GN=elof1 PE=3 SV=1
Length = 80
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 1 MGKRKSRAKPPPKKRVDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTI 60
MGKRKS +KPPPKK V KL F C FC H SV+C +D + G A C +C S+ T I
Sbjct: 1 MGKRKS-SKPPPKKVVQKLPKHFDCLFCAHSQSVDCILDRELGKGVAKCRVCNASYETPI 59
Query: 61 TALTEPIDIYSEWIDECERV 80
L++ ID+YS+WID CE +
Sbjct: 60 HELSDAIDVYSDWIDACESI 79
>sp|P60003|ELOF1_MOUSE Transcription elongation factor 1 homolog OS=Mus musculus
GN=Elof1 PE=1 SV=1
Length = 83
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 41/64 (64%)
Query: 19 LDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECE 78
L+T F+CPFCNH S + ++D G C +C E F T IT L+EP+D+YS+WID CE
Sbjct: 20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACE 79
Query: 79 RVNN 82
N
Sbjct: 80 AANQ 83
>sp|P60002|ELOF1_HUMAN Transcription elongation factor 1 homolog OS=Homo sapiens
GN=ELOF1 PE=2 SV=1
Length = 83
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 41/64 (64%)
Query: 19 LDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECE 78
L+T F+CPFCNH S + ++D G C +C E F T IT L+EP+D+YS+WID CE
Sbjct: 20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACE 79
Query: 79 RVNN 82
N
Sbjct: 80 AANQ 83
>sp|A4IFR3|ELOF1_BOVIN Transcription elongation factor 1 homolog OS=Bos taurus GN=ELOF1
PE=2 SV=1
Length = 83
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 41/64 (64%)
Query: 19 LDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECE 78
L+T F+CPFCNH S + ++D G C +C E F T IT L+EP+D+YS+WID CE
Sbjct: 20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACE 79
Query: 79 RVNN 82
N
Sbjct: 80 AANQ 83
>sp|Q8STS7|ELOF1_ENCCU Transcription elongation factor 1 homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU09_0850 PE=3 SV=2
Length = 80
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 1 MGKRKSRAKPPPKKRVDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTI 60
MG+R+ + + KR +L+ F+CP CNH V+C + + G A C++C+ SF+
Sbjct: 1 MGRRRVKRRINIPKRQSRLEKRFNCPVCNHENVVQCTVKKTLMKGFANCSVCEASFACDA 60
Query: 61 TALTEPIDIYSEWIDEC 77
LT ID+YS W+DEC
Sbjct: 61 NKLTTGIDVYSAWVDEC 77
>sp|Q6PL18|ATAD2_HUMAN ATPase family AAA domain-containing protein 2 OS=Homo sapiens
GN=ATAD2 PE=1 SV=1
Length = 1390
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 41 KNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNNLEDDGAYE 90
K L+ A+ N C + + + D S+W+ E ER L D AY+
Sbjct: 473 KTLVARALANECSQGDKRVAFFMRKGADCLSKWVGESERQLRLLFDQAYQ 522
>sp|P54816|TBP7_CAEEL Tat-binding homolog 7 OS=Caenorhabditis elegans GN=lex-1 PE=1 SV=3
Length = 1291
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 41 KNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNNLEDDGAY 89
K L+ A+ N C+ + + + D S+W+ E ER L D AY
Sbjct: 438 KTLVARALANECRRGANKVAFFMRKGADCLSKWVGESERQLRLLFDQAY 486
>sp|A8X0L9|TBP7_CAEBR Tat-binding homolog 7 OS=Caenorhabditis briggsae GN=lex-1 PE=3 SV=2
Length = 1285
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 41 KNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNNLEDDGAY 89
K L+ A+ N C+ + + + D S+W+ E ER L D AY
Sbjct: 452 KTLVARALANECRRGANKVAFFMRKGADCLSKWVGESERQLRLLFDQAY 500
>sp|Q9ULI0|ATD2B_HUMAN ATPase family AAA domain-containing protein 2B OS=Homo sapiens
GN=ATAD2B PE=1 SV=3
Length = 1458
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 41 KNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNNLEDDGAY 89
K L+ A+ N C + + + D S+W+ E ER L D AY
Sbjct: 447 KTLVARALANECSQGDKKVAFFMRKGADCLSKWVGESERQLRLLFDQAY 495
>sp|Q6FY76|RAD5_CANGA DNA repair protein RAD5 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RAD5 PE=3
SV=1
Length = 1151
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 14 KRVDKLDTVFSCPFCNHGTSVEC-RIDMKNLIGEAICNICQ--ESFSTTITALTEPIDIY 70
K + L V P H TS + NL + + I + S++ T + P+ +
Sbjct: 519 KTISALSLVLMRPKDEHTTSQSLFHQESSNLSSDDVIEIKEPERSYAYKTTLIIVPMSLL 578
Query: 71 SEWIDECERVNN 82
++W DE ++VNN
Sbjct: 579 TQWRDEFDKVNN 590
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,714,967
Number of Sequences: 539616
Number of extensions: 1219446
Number of successful extensions: 2923
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2898
Number of HSP's gapped (non-prelim): 20
length of query: 92
length of database: 191,569,459
effective HSP length: 62
effective length of query: 30
effective length of database: 158,113,267
effective search space: 4743398010
effective search space used: 4743398010
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)