Query 034530
Match_columns 92
No_of_seqs 103 out of 2118
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 03:51:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034530.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034530hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13855 LRR_8: Leucine rich r 99.3 3.4E-12 7.3E-17 64.7 3.0 61 12-73 1-61 (61)
2 PLN03150 hypothetical protein; 99.1 1.3E-10 2.7E-15 81.8 6.2 72 8-80 438-509 (623)
3 PLN00113 leucine-rich repeat r 98.9 1.2E-09 2.6E-14 79.6 4.6 66 10-76 497-562 (968)
4 PLN00113 leucine-rich repeat r 98.9 5.4E-09 1.2E-13 76.2 5.9 72 7-79 518-589 (968)
5 PLN03150 hypothetical protein; 98.8 5.8E-09 1.3E-13 73.5 5.0 67 14-81 420-486 (623)
6 PF14580 LRR_9: Leucine-rich r 98.8 7.5E-09 1.6E-13 62.7 4.8 69 4-76 33-103 (175)
7 KOG0617 Ras suppressor protein 98.7 1.1E-09 2.5E-14 66.5 -0.6 80 7-89 51-134 (264)
8 PF12799 LRR_4: Leucine Rich r 98.6 5.4E-08 1.2E-12 46.3 3.5 39 37-77 2-40 (44)
9 PF14580 LRR_9: Leucine-rich r 98.6 2.9E-08 6.3E-13 60.1 2.9 74 2-76 54-128 (175)
10 PF13855 LRR_8: Leucine rich r 98.5 4.7E-08 1E-12 49.3 1.5 49 36-85 1-49 (61)
11 KOG4194 Membrane glycoprotein 98.5 9.6E-09 2.1E-13 71.8 -1.6 70 7-77 288-357 (873)
12 KOG4194 Membrane glycoprotein 98.4 1.4E-07 3.1E-12 66.1 1.2 74 8-82 265-338 (873)
13 PF12799 LRR_4: Leucine Rich r 98.3 8.2E-07 1.8E-11 42.1 3.4 39 12-51 1-39 (44)
14 KOG4237 Extracellular matrix p 98.3 1.1E-07 2.3E-12 63.9 0.4 76 7-83 269-344 (498)
15 KOG0617 Ras suppressor protein 98.2 2.1E-07 4.6E-12 56.8 -0.6 82 5-89 26-109 (264)
16 KOG0472 Leucine-rich repeat pr 98.1 7.4E-07 1.6E-11 60.3 0.9 23 57-79 501-523 (565)
17 KOG0472 Leucine-rich repeat pr 98.1 7.4E-07 1.6E-11 60.2 -0.3 72 5-79 221-293 (565)
18 KOG0618 Serine/threonine phosp 98.0 2.6E-07 5.5E-12 67.2 -2.8 46 5-50 376-421 (1081)
19 KOG0444 Cytoskeletal regulator 98.0 1.8E-06 3.9E-11 61.5 1.4 77 7-85 73-150 (1255)
20 KOG0618 Serine/threonine phosp 98.0 3.8E-07 8.1E-12 66.3 -2.5 69 10-79 357-425 (1081)
21 KOG2739 Leucine-rich acidic nu 97.9 1E-05 2.2E-10 51.5 2.7 72 4-75 57-130 (260)
22 KOG1259 Nischarin, modulator o 97.9 2.9E-06 6.4E-11 55.8 0.0 64 12-79 284-347 (490)
23 KOG0531 Protein phosphatase 1, 97.9 5.9E-06 1.3E-10 55.8 1.5 66 8-78 114-179 (414)
24 KOG0444 Cytoskeletal regulator 97.8 2.8E-06 6E-11 60.6 -0.8 64 14-79 128-191 (1255)
25 KOG4237 Extracellular matrix p 97.8 6.1E-06 1.3E-10 55.7 0.8 74 13-87 68-142 (498)
26 KOG1644 U2-associated snRNP A' 97.7 7E-05 1.5E-09 46.6 4.0 74 3-76 55-128 (233)
27 PRK15370 E3 ubiquitin-protein 97.6 8.8E-05 1.9E-09 53.9 4.5 71 12-89 325-395 (754)
28 cd00116 LRR_RI Leucine-rich re 97.6 5.9E-05 1.3E-09 48.6 3.1 66 10-75 163-235 (319)
29 KOG2123 Uncharacterized conser 97.5 4.1E-06 8.8E-11 54.5 -2.9 76 2-79 31-106 (388)
30 KOG1259 Nischarin, modulator o 97.5 1.8E-05 3.9E-10 52.2 -0.1 76 10-87 305-401 (490)
31 PLN03210 Resistant to P. syrin 97.5 0.00032 7E-09 53.0 6.3 62 8-71 653-714 (1153)
32 KOG4579 Leucine-rich repeat (L 97.5 2.6E-05 5.6E-10 46.1 0.1 67 10-79 51-118 (177)
33 PRK15387 E3 ubiquitin-protein 97.5 0.0001 2.2E-09 53.7 2.9 60 13-78 403-462 (788)
34 cd00116 LRR_RI Leucine-rich re 97.4 8.2E-05 1.8E-09 48.0 1.9 39 11-49 80-121 (319)
35 PRK15370 E3 ubiquitin-protein 97.4 0.00056 1.2E-08 49.8 6.2 38 37-78 263-300 (754)
36 KOG0531 Protein phosphatase 1, 97.4 7.8E-05 1.7E-09 50.5 1.8 69 7-79 90-158 (414)
37 COG4886 Leucine-rich repeat (L 97.4 0.00011 2.4E-09 49.1 1.9 64 13-79 141-204 (394)
38 PLN03210 Resistant to P. syrin 97.3 0.00057 1.2E-08 51.7 5.1 58 12-71 778-835 (1153)
39 KOG4658 Apoptotic ATPase [Sign 97.2 0.00014 3E-09 53.7 1.1 66 8-75 567-632 (889)
40 KOG1859 Leucine-rich repeat pr 97.2 4E-05 8.6E-10 55.5 -1.8 64 11-77 186-270 (1096)
41 KOG1859 Leucine-rich repeat pr 97.0 6.3E-05 1.4E-09 54.5 -2.0 64 12-79 164-227 (1096)
42 PF00560 LRR_1: Leucine Rich R 96.8 0.00051 1.1E-08 27.6 0.8 16 63-78 2-17 (22)
43 COG4886 Leucine-rich repeat (L 96.8 0.00053 1.2E-08 45.9 1.2 68 9-79 113-181 (394)
44 KOG2982 Uncharacterized conser 96.8 0.00049 1.1E-08 45.5 0.9 68 6-73 91-158 (418)
45 PF13504 LRR_7: Leucine rich r 96.8 0.0011 2.3E-08 25.0 1.5 16 61-76 1-16 (17)
46 PRK15387 E3 ubiquitin-protein 96.7 0.0033 7.2E-08 46.1 4.6 16 62-77 343-358 (788)
47 KOG4579 Leucine-rich repeat (L 96.6 0.00017 3.7E-09 42.7 -1.8 66 10-78 75-140 (177)
48 KOG3665 ZYG-1-like serine/thre 96.6 0.0021 4.5E-08 46.6 3.1 66 8-75 169-234 (699)
49 KOG3207 Beta-tubulin folding c 96.3 0.0011 2.4E-08 45.5 0.3 15 60-74 300-314 (505)
50 smart00370 LRR Leucine-rich re 96.2 0.0045 9.8E-08 25.5 1.7 19 61-79 2-20 (26)
51 smart00369 LRR_TYP Leucine-ric 96.2 0.0045 9.8E-08 25.5 1.7 19 61-79 2-20 (26)
52 KOG3207 Beta-tubulin folding c 96.2 0.00072 1.6E-08 46.4 -1.3 18 9-26 169-186 (505)
53 KOG0532 Leucine-rich repeat (L 96.1 0.00081 1.8E-08 47.6 -1.2 68 8-79 117-184 (722)
54 KOG0532 Leucine-rich repeat (L 96.1 0.0013 2.8E-08 46.6 -0.3 68 7-78 184-251 (722)
55 KOG4658 Apoptotic ATPase [Sign 96.0 0.01 2.2E-07 44.3 3.9 71 8-79 541-613 (889)
56 KOG1644 U2-associated snRNP A' 96.0 0.0081 1.8E-07 37.7 2.9 62 12-76 42-103 (233)
57 KOG2739 Leucine-rich acidic nu 95.8 0.0065 1.4E-07 39.0 2.0 63 10-75 41-105 (260)
58 KOG1909 Ran GTPase-activating 95.8 0.0051 1.1E-07 41.2 1.6 68 8-75 209-284 (382)
59 KOG2123 Uncharacterized conser 94.8 0.0014 2.9E-08 43.1 -3.5 74 11-89 18-95 (388)
60 smart00365 LRR_SD22 Leucine-ri 94.7 0.032 6.9E-07 23.3 1.7 18 60-77 1-18 (26)
61 COG5238 RNA1 Ran GTPase-activa 94.6 0.082 1.8E-06 35.0 4.3 72 7-79 87-175 (388)
62 KOG3665 ZYG-1-like serine/thre 94.3 0.026 5.6E-07 41.2 1.7 42 35-76 147-188 (699)
63 PF13516 LRR_6: Leucine Rich r 94.0 0.018 3.9E-07 23.2 0.3 16 61-76 2-17 (24)
64 KOG1909 Ran GTPase-activating 93.8 0.064 1.4E-06 36.2 2.7 66 10-75 155-227 (382)
65 KOG2982 Uncharacterized conser 93.1 0.06 1.3E-06 36.0 1.6 43 34-76 69-112 (418)
66 PF13306 LRR_5: Leucine rich r 92.9 0.34 7.3E-06 27.1 4.4 60 9-71 32-91 (129)
67 smart00364 LRR_BAC Leucine-ric 92.0 0.12 2.6E-06 21.6 1.3 17 62-78 3-19 (26)
68 PF13306 LRR_5: Leucine rich r 91.9 0.36 7.9E-06 26.9 3.7 68 7-78 7-74 (129)
69 smart00368 LRR_RI Leucine rich 91.9 0.17 3.6E-06 21.3 1.7 16 61-76 2-17 (28)
70 KOG3763 mRNA export factor TAP 90.2 0.23 5E-06 35.4 2.1 66 10-76 216-285 (585)
71 KOG2120 SCF ubiquitin ligase, 89.5 0.24 5.1E-06 33.3 1.6 58 10-69 311-371 (419)
72 PRK15386 type III secretion pr 86.1 1.1 2.4E-05 31.1 3.3 33 9-45 49-81 (426)
73 KOG2120 SCF ubiquitin ligase, 85.1 0.094 2E-06 35.1 -2.1 66 8-73 206-272 (419)
74 COG5238 RNA1 Ran GTPase-activa 84.8 1.9 4.1E-05 28.8 3.7 47 32-78 88-137 (388)
75 KOG3864 Uncharacterized conser 84.7 0.27 5.9E-06 30.9 -0.1 63 14-76 103-167 (221)
76 KOG1947 Leucine rich repeat pr 84.1 0.99 2.1E-05 30.6 2.4 63 11-73 242-307 (482)
77 TIGR00864 PCC polycystin catio 80.4 1.6 3.6E-05 36.7 2.6 34 18-51 1-34 (2740)
78 smart00367 LRR_CC Leucine-rich 74.3 2.8 6.1E-05 16.9 1.4 16 60-75 1-17 (26)
79 KOG0473 Leucine-rich repeat pr 73.2 0.043 9.3E-07 35.5 -6.3 69 8-79 38-106 (326)
80 PRK15386 type III secretion pr 66.5 19 0.00041 25.3 4.7 31 13-46 73-104 (426)
81 TIGR00864 PCC polycystin catio 62.4 7.5 0.00016 33.2 2.5 22 7-28 14-35 (2740)
82 KOG3763 mRNA export factor TAP 50.6 9.3 0.0002 27.7 1.2 38 34-71 216-254 (585)
83 TIGR02167 Liste_lipo_26 bacter 24.4 39 0.00086 13.7 0.6 11 59-69 4-14 (26)
84 smart00446 LRRcap occurring C- 24.3 26 0.00056 14.5 0.0 14 56-69 8-21 (26)
No 1
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.28 E-value=3.4e-12 Score=64.72 Aligned_cols=61 Identities=30% Similarity=0.396 Sum_probs=55.3
Q ss_pred CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcC
Q 034530 12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEI 73 (92)
Q Consensus 12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l 73 (92)
|+|+.+++++|++....+..|..+++|+.+++++|.++...+ +.|.++++|+++++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCCcC
Confidence 578999999999998777789999999999999999996665 6799999999999999985
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.13 E-value=1.3e-10 Score=81.78 Aligned_cols=72 Identities=26% Similarity=0.411 Sum_probs=65.1
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCC
Q 034530 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQ 80 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~ 80 (92)
++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+| +.++++++|+.|++++|++++..|..
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP-~~l~~L~~L~~L~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-ESLGQLTSLRILNLNGNSLSGRVPAA 509 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc-hHHhcCCCCCEEECcCCcccccCChH
Confidence 5578899999999999999999999999999999999999999998 46899999999999999999887753
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.93 E-value=1.2e-09 Score=79.55 Aligned_cols=66 Identities=30% Similarity=0.380 Sum_probs=30.6
Q ss_pred CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530 10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~ 76 (92)
.+++|+.+++++|.+.+.+|..+..+++|+.+++++|.+++..| ..+..+++|+.+|+++|++.+.
T Consensus 497 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~ 562 (968)
T PLN00113 497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP-ASFSEMPVLSQLDLSQNQLSGE 562 (968)
T ss_pred hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC-hhHhCcccCCEEECCCCccccc
Confidence 34444444444444444444444444444444444444444444 2344444444444444444443
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.86 E-value=5.4e-09 Score=76.20 Aligned_cols=72 Identities=21% Similarity=0.314 Sum_probs=65.8
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
.++.+++|+.+++++|.+.+.+|..+..+++|+.+++++|++.+.+| ..+.+++.|+.+++++|++.+..|.
T Consensus 518 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 518 ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP-KNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCC-hhHhcCcccCEEeccCCcceeeCCC
Confidence 45678999999999999999999999999999999999999999998 4688899999999999999986664
No 5
>PLN03150 hypothetical protein; Provisional
Probab=98.83 E-value=5.8e-09 Score=73.53 Aligned_cols=67 Identities=25% Similarity=0.433 Sum_probs=61.5
Q ss_pred CCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCC
Q 034530 14 LKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQG 81 (92)
Q Consensus 14 L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~ 81 (92)
++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+| ..++.+++|+.|++++|++++..|...
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP-~~~~~l~~L~~LdLs~N~lsg~iP~~l 486 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP-PSLGSITSLEVLDLSYNSFNGSIPESL 486 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCC-hHHhCCCCCCEEECCCCCCCCCCchHH
Confidence 6789999999999999999999999999999999999998 468999999999999999999877643
No 6
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.83 E-value=7.5e-09 Score=62.68 Aligned_cols=69 Identities=25% Similarity=0.332 Sum_probs=17.8
Q ss_pred cccccC-CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhc-CCCCCCCEEeccCCcCCCc
Q 034530 4 KFVVSK-GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREF-DSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 4 ~~~~l~-~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~-~~~~~L~~l~ls~N~l~~~ 76 (92)
.++.++ .+.+++.|++++|.+... +.+..++.|+.|++++|+++...+ .+ ..+++|++|++++|++...
T Consensus 33 ~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~--~l~~~lp~L~~L~L~~N~I~~l 103 (175)
T PF14580_consen 33 TIENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISE--GLDKNLPNLQELYLSNNKISDL 103 (175)
T ss_dssp ---S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CH--HHHHH-TT--EEE-TTS---SC
T ss_pred cccchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcccc--chHHhCCcCCEEECcCCcCCCh
Confidence 334444 345555555665555532 234445555555555555553211 12 2355555555555555443
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.74 E-value=1.1e-09 Score=66.52 Aligned_cols=80 Identities=25% Similarity=0.422 Sum_probs=62.2
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC----CCc
Q 034530 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP----QGK 82 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~----~~~ 82 (92)
.+..+.+|+.+++++|+++. .|..++.++.|+.++++.|++. ..|. .|+.+|.|+++|+++|++...... ...
T Consensus 51 nia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lpr-gfgs~p~levldltynnl~e~~lpgnff~m~ 127 (264)
T KOG0617|consen 51 NIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPR-GFGSFPALEVLDLTYNNLNENSLPGNFFYMT 127 (264)
T ss_pred cHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCcc-ccCCCchhhhhhccccccccccCCcchhHHH
Confidence 34567788888999999885 5888999999999999999988 4553 699999999999999999776443 235
Q ss_pred chhhHHh
Q 034530 83 QLKCYLI 89 (92)
Q Consensus 83 ~l~~~~~ 89 (92)
.++++.+
T Consensus 128 tlralyl 134 (264)
T KOG0617|consen 128 TLRALYL 134 (264)
T ss_pred HHHHHHh
Confidence 5555543
No 8
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.63 E-value=5.4e-08 Score=46.25 Aligned_cols=39 Identities=33% Similarity=0.465 Sum_probs=22.8
Q ss_pred CCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcC
Q 034530 37 SLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV 77 (92)
Q Consensus 37 ~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~ 77 (92)
+|+++++++|+++...+ .+.++++|+.+++++|++++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~--~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP--ELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGG--HGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCc--hHhCCCCCCEEEecCCCCCCCc
Confidence 45666666666664322 3666777777777777766554
No 9
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.62 E-value=2.9e-08 Score=60.13 Aligned_cols=74 Identities=26% Similarity=0.349 Sum_probs=36.9
Q ss_pred CccccccCCCCCCCEEeccCccCCCCChhhh-hcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530 2 IDKFVVSKGLSKLKSLGLAGIKLNRSILSSL-TVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 2 ~~~~~~l~~l~~L~~l~ls~n~l~~~~~~~~-~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~ 76 (92)
|.+++.+..++.|+.|++++|+++.. ...+ ..+++|+.|++++|++........+..+++|+.|++.+|.++..
T Consensus 54 I~~l~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 54 ITKLEGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp -S--TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred CccccCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 45677788899999999999999975 3344 46899999999999998766555677899999999999998754
No 10
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.51 E-value=4.7e-08 Score=49.30 Aligned_cols=49 Identities=27% Similarity=0.339 Sum_probs=41.1
Q ss_pred CCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCCcchh
Q 034530 36 SSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQLK 85 (92)
Q Consensus 36 ~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~~l~ 85 (92)
++|+.+++++|+++...+ +.|.++++|+++++++|+++.+++..+..+.
T Consensus 1 p~L~~L~l~~n~l~~i~~-~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~ 49 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPP-DSFSNLPNLETLDLSNNNLTSIPPDAFSNLP 49 (61)
T ss_dssp TTESEEEETSSTESEECT-TTTTTGTTESEEEETSSSESEEETTTTTTST
T ss_pred CcCcEEECCCCCCCccCH-HHHcCCCCCCEeEccCCccCccCHHHHcCCC
Confidence 478999999999996544 6799999999999999999999887554443
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.50 E-value=9.6e-09 Score=71.77 Aligned_cols=70 Identities=30% Similarity=0.380 Sum_probs=40.5
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcC
Q 034530 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV 77 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~ 77 (92)
|+-++..|+.|++|+|.++.+.+..+..+++|++|++++|++....+ +.|..+..|++|+|++|.++...
T Consensus 288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~-~sf~~L~~Le~LnLs~Nsi~~l~ 357 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE-GSFRVLSQLEELNLSHNSIDHLA 357 (873)
T ss_pred cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCCh-hHHHHHHHhhhhcccccchHHHH
Confidence 45556666666666666666666666666666666666666664333 34544555555555555554443
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.36 E-value=1.4e-07 Score=66.13 Aligned_cols=74 Identities=26% Similarity=0.216 Sum_probs=58.8
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCCc
Q 034530 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGK 82 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~ 82 (92)
+-.|.+++.++++.|+++..-.-++.+++.|+.|++++|.+....+ +.|..++.|+.|||++|+++..++..+.
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~-d~WsftqkL~~LdLs~N~i~~l~~~sf~ 338 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI-DSWSFTQKLKELDLSSNRITRLDEGSFR 338 (873)
T ss_pred eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec-chhhhcccceeEeccccccccCChhHHH
Confidence 3467778888888888886555567788888899999999887666 6788888999999999999888877543
No 13
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.35 E-value=8.2e-07 Score=42.14 Aligned_cols=39 Identities=18% Similarity=0.346 Sum_probs=32.9
Q ss_pred CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCc
Q 034530 12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGT 51 (92)
Q Consensus 12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~ 51 (92)
++|+.|++++|+++. +|+.+..+++|+.+++++|+++..
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCCC
Confidence 578999999999996 476799999999999999999953
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.34 E-value=1.1e-07 Score=63.85 Aligned_cols=76 Identities=22% Similarity=0.212 Sum_probs=67.0
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCCcc
Q 034530 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQ 83 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~~ 83 (92)
.+.++++|+.+++++|.+..+-+..|...+.++.|.+..|++.... ...|.++..|++|+|..|+|+.+.+..+..
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~-~~~f~~ls~L~tL~L~~N~it~~~~~aF~~ 344 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVS-SGMFQGLSGLKTLSLYDNQITTVAPGAFQT 344 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHH-HHhhhccccceeeeecCCeeEEEecccccc
Confidence 4678999999999999999988889999999999999999999544 467899999999999999999988875443
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.20 E-value=2.1e-07 Score=56.78 Aligned_cols=82 Identities=17% Similarity=0.209 Sum_probs=65.7
Q ss_pred ccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC--CCc
Q 034530 5 FVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP--QGK 82 (92)
Q Consensus 5 ~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~--~~~ 82 (92)
++.+-.++.+..+.+|.|.+. .+|+.+..+.+|+.+++.+|++....+ .+..++.|++++++.|++...|.. +++
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp~--~issl~klr~lnvgmnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELPT--SISSLPKLRILNVGMNRLNILPRGFGSFP 102 (264)
T ss_pred cccccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcCh--hhhhchhhhheecchhhhhcCccccCCCc
Confidence 445556778888999999999 468899999999999999999996554 589999999999999999876654 344
Q ss_pred chhhHHh
Q 034530 83 QLKCYLI 89 (92)
Q Consensus 83 ~l~~~~~ 89 (92)
.+.-+++
T Consensus 103 ~levldl 109 (264)
T KOG0617|consen 103 ALEVLDL 109 (264)
T ss_pred hhhhhhc
Confidence 4444443
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.13 E-value=7.4e-07 Score=60.26 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=11.5
Q ss_pred cCCCCCCCEEeccCCcCCCcCCC
Q 034530 57 FDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 57 ~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
+.++.+|.++|+.+|.+..+||.
T Consensus 501 l~nm~nL~tLDL~nNdlq~IPp~ 523 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNNDLQQIPPI 523 (565)
T ss_pred hhhhhhcceeccCCCchhhCChh
Confidence 44444555555555555555443
No 17
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.06 E-value=7.4e-07 Score=60.24 Aligned_cols=72 Identities=31% Similarity=0.297 Sum_probs=57.6
Q ss_pred ccccCCCCCCCEEeccCccCCCCChhhh-hcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530 5 FVVSKGLSKLKSLGLAGIKLNRSILSSL-TVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 5 ~~~l~~l~~L~~l~ls~n~l~~~~~~~~-~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
++.+++++.|+.+.++.|+++-. |+.. ..++++..+|++.|+++. +| +++--+.+|+.+|+|+|.+++.+.+
T Consensus 221 lPef~gcs~L~Elh~g~N~i~~l-pae~~~~L~~l~vLDLRdNklke-~P-de~clLrsL~rLDlSNN~is~Lp~s 293 (565)
T KOG0472|consen 221 LPEFPGCSLLKELHVGENQIEML-PAEHLKHLNSLLVLDLRDNKLKE-VP-DEICLLRSLERLDLSNNDISSLPYS 293 (565)
T ss_pred CCCCCccHHHHHHHhcccHHHhh-HHHHhcccccceeeecccccccc-Cc-hHHHHhhhhhhhcccCCccccCCcc
Confidence 45667777788888888888854 5555 489999999999999995 55 3566688999999999999998876
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.04 E-value=2.6e-07 Score=67.17 Aligned_cols=46 Identities=30% Similarity=0.313 Sum_probs=28.8
Q ss_pred ccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCC
Q 034530 5 FVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKG 50 (92)
Q Consensus 5 ~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~ 50 (92)
++.+.++..|+.|++++|++.......+.++..|+.|++++|.++.
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~ 421 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT 421 (1081)
T ss_pred hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh
Confidence 3445566667777777776665544555666666666666666663
No 19
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.04 E-value=1.8e-06 Score=61.54 Aligned_cols=77 Identities=21% Similarity=0.260 Sum_probs=55.2
Q ss_pred ccCCCCCCCEEeccCccCCC-CChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCCcchh
Q 034530 7 VSKGLSKLKSLGLAGIKLNR-SILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQLK 85 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~-~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~~l~ 85 (92)
.++.+|.|+.+.+-.|++.. -+|..+..+..|+.+|+++|++.. .|. .+...++.-+|+||+|+|..+|..-+.+|.
T Consensus 73 ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E-vP~-~LE~AKn~iVLNLS~N~IetIPn~lfinLt 150 (1255)
T KOG0444|consen 73 ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE-VPT-NLEYAKNSIVLNLSYNNIETIPNSLFINLT 150 (1255)
T ss_pred hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhh-cch-hhhhhcCcEEEEcccCccccCCchHHHhhH
Confidence 45667777777777777765 467788888888888888888884 442 466677777888888888877766444443
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.00 E-value=3.8e-07 Score=66.34 Aligned_cols=69 Identities=29% Similarity=0.384 Sum_probs=60.8
Q ss_pred CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530 10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
.++.|+.|.+.+|.+...+-+.+....+|+.|++++|++. .+|...+.+++.|+.|+||+|+++..+..
T Consensus 357 ~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~t 425 (1081)
T KOG0618|consen 357 NHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPDT 425 (1081)
T ss_pred hhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhhhhHH
Confidence 3566888999999999988888999999999999999999 56667789999999999999999988743
No 21
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.89 E-value=1e-05 Score=51.53 Aligned_cols=72 Identities=24% Similarity=0.272 Sum_probs=54.3
Q ss_pred cccccCCCCCCCEEeccCc--cCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCC
Q 034530 4 KFVVSKGLSKLKSLGLAGI--KLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDN 75 (92)
Q Consensus 4 ~~~~l~~l~~L~~l~ls~n--~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~ 75 (92)
.+..+..+++|+.|.++.| +..+-.+.....+++|+++.++.|+++..........+.+|..||+.+|..+.
T Consensus 57 t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 57 TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence 3556778889999999999 66665555555669999999999999864333346667788899998887766
No 22
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.87 E-value=2.9e-06 Score=55.81 Aligned_cols=64 Identities=28% Similarity=0.361 Sum_probs=45.4
Q ss_pred CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530 12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
+.|+.+++|+|.++. +..+..-.+.++.|++++|.+. .+. .+..+++|..||+|+|.++....+
T Consensus 284 q~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N~Ls~~~Gw 347 (490)
T KOG1259|consen 284 QELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGNLLAECVGW 347 (490)
T ss_pred hhhhhccccccchhh-hhhhhhhccceeEEecccccee-eeh--hhhhcccceEeecccchhHhhhhh
Confidence 446677888888774 3566777788888888888877 333 366677888888888877766554
No 23
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.87 E-value=5.9e-06 Score=55.85 Aligned_cols=66 Identities=27% Similarity=0.379 Sum_probs=29.4
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
+..+++|+.+++++|.+.... .+..++.|+.|++.+|.+.... .+..+++|+.+++++|++..+..
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~---~~~~l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDIS---GLESLKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred hhhhhcchheecccccccccc--chhhccchhhheeccCcchhcc---CCccchhhhcccCCcchhhhhhh
Confidence 334444444555555444321 2333334444555555444221 23334455555555555555444
No 24
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.82 E-value=2.8e-06 Score=60.62 Aligned_cols=64 Identities=17% Similarity=0.137 Sum_probs=28.5
Q ss_pred CCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530 14 LKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 14 L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
+-.|++|+|+++.+..+-+.+++.|-.||+++|++....| .+..+..|++|+|++|.+..+...
T Consensus 128 ~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPP--Q~RRL~~LqtL~Ls~NPL~hfQLr 191 (1255)
T KOG0444|consen 128 SIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPP--QIRRLSMLQTLKLSNNPLNHFQLR 191 (1255)
T ss_pred cEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCH--HHHHHhhhhhhhcCCChhhHHHHh
Confidence 3344444444443322233444444455555555543333 244444455555555544444333
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.82 E-value=6.1e-06 Score=55.69 Aligned_cols=74 Identities=16% Similarity=0.131 Sum_probs=58.0
Q ss_pred CCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEE-eccCCcCCCcCCCCCcchhhH
Q 034530 13 KLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVL-DLSWNEIDNLVVPQGKQLKCY 87 (92)
Q Consensus 13 ~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l-~ls~N~l~~~~~~~~~~l~~~ 87 (92)
....+++..|.++.+.+..|..+.+|+.+|+++|+++..-| ++|.+++++..+ +.++|+|+..+...+..|..+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p-~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAP-DAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcCh-HhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 45667889999998777788899999999999999997666 688888888555 445689998888766666544
No 26
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.70 E-value=7e-05 Score=46.62 Aligned_cols=74 Identities=23% Similarity=0.221 Sum_probs=54.7
Q ss_pred ccccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530 3 DKFVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 3 ~~~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~ 76 (92)
-++..+..++.|..|.+++|++..+.|.--..++++..|.+.+|.+......+.+..+|.|+.|.+-.|+.+..
T Consensus 55 ~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k 128 (233)
T KOG1644|consen 55 RKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHK 128 (233)
T ss_pred hhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcc
Confidence 34567778888888888888888665544445677888888888888665555567788888888877777654
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.64 E-value=8.8e-05 Score=53.86 Aligned_cols=71 Identities=21% Similarity=0.197 Sum_probs=47.3
Q ss_pred CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCCCCcchhhHHh
Q 034530 12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQLKCYLI 89 (92)
Q Consensus 12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~~l~~~~~ 89 (92)
++|+.|++++|.+.. +|..+ .++|+.|++++|++.. +|. .+ .+.|+.|++++|+++..++.....++.+.+
T Consensus 325 ~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~-LP~-~l--p~~L~~LdLs~N~Lt~LP~~l~~sL~~LdL 395 (754)
T PRK15370 325 PGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITV-LPE-TL--PPTITTLDVSRNALTNLPENLPAALQIMQA 395 (754)
T ss_pred ccceeccccCCcccc-CChhh--cCcccEEECCCCCCCc-CCh-hh--cCCcCEEECCCCcCCCCCHhHHHHHHHHhh
Confidence 467777777777775 34443 2678888888888874 442 23 357888888888888776654445555544
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.62 E-value=5.9e-05 Score=48.64 Aligned_cols=66 Identities=26% Similarity=0.359 Sum_probs=30.8
Q ss_pred CCCCCCEEeccCccCCCC----ChhhhhcCCCCcEEecCCCccCCccCh---hhcCCCCCCCEEeccCCcCCC
Q 034530 10 GLSKLKSLGLAGIKLNRS----ILSSLTVFSSLRELHLRDTGFKGTFDV---REFDSFNNLEVLDLSWNEIDN 75 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~----~~~~~~~~~~L~~l~l~~n~l~~~~~~---~~~~~~~~L~~l~ls~N~l~~ 75 (92)
.+.+++.+++++|.+.+. ++..+...++|+.+++++|.+.+.... ..+..+++|++|++++|.+++
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 334555555555555531 112233344555556555555432210 123345556666666665553
No 29
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=4.1e-06 Score=54.48 Aligned_cols=76 Identities=20% Similarity=0.219 Sum_probs=63.9
Q ss_pred CccccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530 2 IDKFVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 2 ~~~~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
++.++.+..|+.|+.|.+|-|.++.. ..+..|++|+.+.++.|.+.+.-....+.++|+|++|.|..|...+..+.
T Consensus 31 L~DIsic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 31 LDDISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQ 106 (388)
T ss_pred ccHHHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccch
Confidence 56678888999999999999999974 45888999999999999998765555678899999999999988776553
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.54 E-value=1.8e-05 Score=52.23 Aligned_cols=76 Identities=24% Similarity=0.243 Sum_probs=41.1
Q ss_pred CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccCh--------------------hhcCCCCCCCEEecc
Q 034530 10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDV--------------------REFDSFNNLEVLDLS 69 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~--------------------~~~~~~~~L~~l~ls 69 (92)
-.|+++.+++|.|++... . ++..+++|+.||+++|.++....- ..++.+.+|..||++
T Consensus 305 L~Pkir~L~lS~N~i~~v-~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~ 382 (490)
T KOG1259|consen 305 LAPKLRRLILSQNRIRTV-Q-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLS 382 (490)
T ss_pred hccceeEEeccccceeee-h-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheecccc
Confidence 346667777777766642 1 256666667777777666543210 012334456666666
Q ss_pred CCcCCCcCCC-CCcchhhH
Q 034530 70 WNEIDNLVVP-QGKQLKCY 87 (92)
Q Consensus 70 ~N~l~~~~~~-~~~~l~~~ 87 (92)
.|+|+....- .++++.|+
T Consensus 383 ~N~Ie~ldeV~~IG~LPCL 401 (490)
T KOG1259|consen 383 SNQIEELDEVNHIGNLPCL 401 (490)
T ss_pred ccchhhHHHhcccccccHH
Confidence 6666554432 34455554
No 31
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.53 E-value=0.00032 Score=52.99 Aligned_cols=62 Identities=18% Similarity=0.163 Sum_probs=29.2
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCC
Q 034530 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWN 71 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N 71 (92)
++.+++|+.|++++|.....+|..+..+++|+.+++++|..-..+|. .+ ++++|+.|++++|
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-GI-NLKSLYRLNLSGC 714 (1153)
T ss_pred cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC-cC-CCCCCCEEeCCCC
Confidence 34445555555555443344455555555566666555433333331 11 3444444444443
No 32
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.48 E-value=2.6e-05 Score=46.07 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=50.9
Q ss_pred CCCCCCEEeccCccCCCCChhhh-hcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530 10 GLSKLKSLGLAGIKLNRSILSSL-TVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~~~~~~-~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
....|...++++|.+... |+.| .+++.++.+++++|.+++ +|+ ++..++.|+.++++.|.+...+..
T Consensus 51 ~~~el~~i~ls~N~fk~f-p~kft~kf~t~t~lNl~~neisd-vPe-E~Aam~aLr~lNl~~N~l~~~p~v 118 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKF-PKKFTIKFPTATTLNLANNEISD-VPE-ELAAMPALRSLNLRFNPLNAEPRV 118 (177)
T ss_pred CCceEEEEecccchhhhC-CHHHhhccchhhhhhcchhhhhh-chH-HHhhhHHhhhcccccCccccchHH
Confidence 334566688999999865 4445 456788899999999984 564 488889999999999988776544
No 33
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.46 E-value=0.0001 Score=53.70 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=37.4
Q ss_pred CCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530 13 KLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 13 ~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
+|+.|++++|.+.. +|.. ..+|+.|++++|+++ .+| ..+.++++++.+++++|++++..+
T Consensus 403 ~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP-~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 403 ELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLP-ESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred CCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccC-hHHhhccCCCeEECCCCCCCchHH
Confidence 44455555555543 2321 234556666777766 455 357778889999999999987643
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.43 E-value=8.2e-05 Score=47.98 Aligned_cols=39 Identities=26% Similarity=0.297 Sum_probs=16.1
Q ss_pred CCCCCEEeccCccCCCCChhhhhcCCC---CcEEecCCCccC
Q 034530 11 LSKLKSLGLAGIKLNRSILSSLTVFSS---LRELHLRDTGFK 49 (92)
Q Consensus 11 l~~L~~l~ls~n~l~~~~~~~~~~~~~---L~~l~l~~n~l~ 49 (92)
+++|+.+++++|.+.+..+..+..+.. |+.+++++|.+.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence 444444444444444322333332222 444444444443
No 35
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.43 E-value=0.00056 Score=49.82 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=22.4
Q ss_pred CCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530 37 SLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 37 ~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
+|+.|++++|+++. +|. .+ .++|+.|++++|++++.+.
T Consensus 263 ~L~~L~Ls~N~L~~-LP~-~l--~~sL~~L~Ls~N~Lt~LP~ 300 (754)
T PRK15370 263 ALQSLDLFHNKISC-LPE-NL--PEELRYLSVYDNSIRTLPA 300 (754)
T ss_pred CCCEEECcCCccCc-ccc-cc--CCCCcEEECCCCccccCcc
Confidence 56666666666663 331 22 2467777777777776554
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.42 E-value=7.8e-05 Score=50.48 Aligned_cols=69 Identities=22% Similarity=0.193 Sum_probs=57.8
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
.+..+.+++.+++.+|.+... ...+..+++|+.+++++|.+....+ +..++.|+.|++++|.+..+...
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~L~l~~N~i~~~~~~ 158 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG---LSTLTLLKELNLSGNLISDISGL 158 (414)
T ss_pred ccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc---hhhccchhhheeccCcchhccCC
Confidence 477889999999999999963 3237779999999999999997655 66677899999999999888654
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.36 E-value=0.00011 Score=49.15 Aligned_cols=64 Identities=30% Similarity=0.373 Sum_probs=43.2
Q ss_pred CCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530 13 KLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 13 ~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
+++.+++++|.+.. +|..+..++.|+.|+++.|++....+ ..+..++|+.+++++|++...+..
T Consensus 141 nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~~l~~--~~~~~~~L~~L~ls~N~i~~l~~~ 204 (394)
T COG4886 141 NLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLSDLPK--LLSNLSNLNNLDLSGNKISDLPPE 204 (394)
T ss_pred hcccccccccchhh-hhhhhhccccccccccCCchhhhhhh--hhhhhhhhhheeccCCccccCchh
Confidence 67777777777774 24556677777777777777775443 232567777777777777777664
No 38
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.28 E-value=0.00057 Score=51.72 Aligned_cols=58 Identities=26% Similarity=0.232 Sum_probs=37.9
Q ss_pred CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCC
Q 034530 12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWN 71 (92)
Q Consensus 12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N 71 (92)
++|+.|++++|.....+|..+..+++|+.|++++|..-..+|.. . ++++|+.|++++|
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~-~-~L~sL~~L~Ls~c 835 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG-I-NLESLESLDLSGC 835 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC-C-CccccCEEECCCC
Confidence 56778888888766667888888888888888876544445521 1 3444444444443
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.19 E-value=0.00014 Score=53.69 Aligned_cols=66 Identities=26% Similarity=0.298 Sum_probs=54.4
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCC
Q 034530 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDN 75 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~ 75 (92)
+..|+.|+.||+++|.=-+..|..++.+.+|++|+++.+.++ ..|. .++++..|.+||+..+.-..
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~-~l~~Lk~L~~Lnl~~~~~l~ 632 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPS-GLGNLKKLIYLNLEVTGRLE 632 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccch-HHHHHHhhheeccccccccc
Confidence 677899999999998777788999999999999999999988 4553 58888889999988775433
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.17 E-value=4e-05 Score=55.46 Aligned_cols=64 Identities=27% Similarity=0.361 Sum_probs=34.8
Q ss_pred CCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccCh---------------------hhcCCCCCCCEEecc
Q 034530 11 LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDV---------------------REFDSFNNLEVLDLS 69 (92)
Q Consensus 11 l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~---------------------~~~~~~~~L~~l~ls 69 (92)
++-++.|+++.|++... . .+..++.|++||+++|.+.- +|. -.+.++.+|..||++
T Consensus 186 l~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDls 262 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLRH-VPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLS 262 (1096)
T ss_pred HHHhhhhccchhhhhhh-H-HHHhcccccccccccchhcc-ccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchh
Confidence 34455555555555532 1 44555555555555555552 221 013446677777777
Q ss_pred CCcCCCcC
Q 034530 70 WNEIDNLV 77 (92)
Q Consensus 70 ~N~l~~~~ 77 (92)
+|-+.+..
T Consensus 263 yNll~~hs 270 (1096)
T KOG1859|consen 263 YNLLSEHS 270 (1096)
T ss_pred Hhhhhcch
Confidence 77776653
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.01 E-value=6.3e-05 Score=54.48 Aligned_cols=64 Identities=25% Similarity=0.359 Sum_probs=52.9
Q ss_pred CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530 12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
..|...+++.|++. .....+.-++.++.|++++|++... . .+..++.|++||+++|.+..++--
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v-~--~Lr~l~~LkhLDlsyN~L~~vp~l 227 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV-D--NLRRLPKLKHLDLSYNCLRHVPQL 227 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh-H--HHHhcccccccccccchhcccccc
Confidence 34667788899888 4467788889999999999999953 2 578899999999999999887654
No 42
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.85 E-value=0.00051 Score=27.56 Aligned_cols=16 Identities=44% Similarity=0.538 Sum_probs=9.0
Q ss_pred CCEEeccCCcCCCcCC
Q 034530 63 LEVLDLSWNEIDNLVV 78 (92)
Q Consensus 63 L~~l~ls~N~l~~~~~ 78 (92)
|++||+++|+++.+++
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 5556666666664444
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.81 E-value=0.00053 Score=45.86 Aligned_cols=68 Identities=28% Similarity=0.413 Sum_probs=53.8
Q ss_pred CCCCCCCEEeccCccCCCCChhhhhcCC-CCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530 9 KGLSKLKSLGLAGIKLNRSILSSLTVFS-SLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 9 ~~l~~L~~l~ls~n~l~~~~~~~~~~~~-~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
..+..+..+++.+|.+.. +++...... +|+.+++++|++.... ..++.+++|+.|++++|++...++.
T Consensus 113 ~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~~N~l~~l~~~ 181 (394)
T COG4886 113 LELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIESLP--SPLRNLPNLKNLDLSFNDLSDLPKL 181 (394)
T ss_pred hcccceeEEecCCccccc-Cccccccchhhcccccccccchhhhh--hhhhccccccccccCCchhhhhhhh
Confidence 345678888999998885 455566664 8999999999999542 2478899999999999999998875
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.00049 Score=45.47 Aligned_cols=68 Identities=26% Similarity=0.302 Sum_probs=47.3
Q ss_pred cccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcC
Q 034530 6 VVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEI 73 (92)
Q Consensus 6 ~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l 73 (92)
..+.+||.++.|+++.|.+...+........+|+.+.+.+..+.+.--......+|.++.+++|.|.+
T Consensus 91 ~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 91 AILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred HHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 35667888888888888888755443356677888888877777654323355677778888887743
No 45
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.78 E-value=0.0011 Score=25.01 Aligned_cols=16 Identities=50% Similarity=0.636 Sum_probs=8.4
Q ss_pred CCCCEEeccCCcCCCc
Q 034530 61 NNLEVLDLSWNEIDNL 76 (92)
Q Consensus 61 ~~L~~l~ls~N~l~~~ 76 (92)
++|+.|++++|+++..
T Consensus 1 ~~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSL 16 (17)
T ss_dssp TT-SEEEETSS--SSE
T ss_pred CccCEEECCCCCCCCC
Confidence 3567777777776654
No 46
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.71 E-value=0.0033 Score=46.12 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=8.9
Q ss_pred CCCEEeccCCcCCCcC
Q 034530 62 NLEVLDLSWNEIDNLV 77 (92)
Q Consensus 62 ~L~~l~ls~N~l~~~~ 77 (92)
+|+.|++++|++++.|
T Consensus 343 ~Lq~LdLS~N~Ls~LP 358 (788)
T PRK15387 343 GLQELSVSDNQLASLP 358 (788)
T ss_pred ccceEecCCCccCCCC
Confidence 4555566655555543
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.64 E-value=0.00017 Score=42.68 Aligned_cols=66 Identities=21% Similarity=0.289 Sum_probs=53.9
Q ss_pred CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530 10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
.++.++.+++++|.++. +|.++..++.|+.++++.|.+... |+ .+..+.++-.||..+|....++-
T Consensus 75 kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~~~-p~-vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 75 KFPTATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLNAE-PR-VIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred ccchhhhhhcchhhhhh-chHHHhhhHHhhhcccccCccccc-hH-HHHHHHhHHHhcCCCCccccCcH
Confidence 45678899999999995 588899999999999999999954 42 45558888888888887766554
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.61 E-value=0.0021 Score=46.60 Aligned_cols=66 Identities=23% Similarity=0.454 Sum_probs=37.2
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCC
Q 034530 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDN 75 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~ 75 (92)
..++|+|..||+|+.+++.. ..++.+++|+.|.+.+=.+........+.++++|++||+|......
T Consensus 169 c~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~ 234 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND 234 (699)
T ss_pred hhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccccc
Confidence 44677777777777777643 4455555555555544333322222234556667777776554433
No 49
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0011 Score=45.48 Aligned_cols=15 Identities=47% Similarity=0.638 Sum_probs=7.4
Q ss_pred CCCCCEEeccCCcCC
Q 034530 60 FNNLEVLDLSWNEID 74 (92)
Q Consensus 60 ~~~L~~l~ls~N~l~ 74 (92)
++.|+.|++..|++.
T Consensus 300 f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 300 FPKLEYLNISENNIR 314 (505)
T ss_pred cccceeeecccCccc
Confidence 444555555555543
No 50
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=96.17 E-value=0.0045 Score=25.55 Aligned_cols=19 Identities=42% Similarity=0.443 Sum_probs=13.2
Q ss_pred CCCCEEeccCCcCCCcCCC
Q 034530 61 NNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 61 ~~L~~l~ls~N~l~~~~~~ 79 (92)
++|+.|++++|+++.+++.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 5677777777777777654
No 51
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=96.17 E-value=0.0045 Score=25.55 Aligned_cols=19 Identities=42% Similarity=0.443 Sum_probs=13.2
Q ss_pred CCCCEEeccCCcCCCcCCC
Q 034530 61 NNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 61 ~~L~~l~ls~N~l~~~~~~ 79 (92)
++|+.|++++|+++.+++.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 5677777777777777654
No 52
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.00072 Score=46.37 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=9.5
Q ss_pred CCCCCCCEEeccCccCCC
Q 034530 9 KGLSKLKSLGLAGIKLNR 26 (92)
Q Consensus 9 ~~l~~L~~l~ls~n~l~~ 26 (92)
.++|+|+.|+++.|++..
T Consensus 169 eqLp~Le~LNls~Nrl~~ 186 (505)
T KOG3207|consen 169 EQLPSLENLNLSSNRLSN 186 (505)
T ss_pred HhcccchhcccccccccC
Confidence 345555555555555543
No 53
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.12 E-value=0.00081 Score=47.62 Aligned_cols=68 Identities=25% Similarity=0.265 Sum_probs=49.0
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
+..+..+.+++++.|+++.. |..+..++ |+.+.+++|+++...+ .++..+.|..+|.+.|++...++.
T Consensus 117 i~~L~~lt~l~ls~NqlS~l-p~~lC~lp-Lkvli~sNNkl~~lp~--~ig~~~tl~~ld~s~nei~slpsq 184 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSNQLSHL-PDGLCDLP-LKVLIVSNNKLTSLPE--EIGLLPTLAHLDVSKNEIQSLPSQ 184 (722)
T ss_pred hhhhhHHHHhhhccchhhcC-ChhhhcCc-ceeEEEecCccccCCc--ccccchhHHHhhhhhhhhhhchHH
Confidence 34566777888888888853 55666665 7788888888884433 466777888888888888877665
No 54
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.09 E-value=0.0013 Score=46.65 Aligned_cols=68 Identities=21% Similarity=0.225 Sum_probs=39.3
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
.++++.+|+.+.+..|++... |++.. .=.|..||++.|++. .+|. .|.+++.|++|-|.+|.+++.+.
T Consensus 184 ql~~l~slr~l~vrRn~l~~l-p~El~-~LpLi~lDfScNkis-~iPv-~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 184 QLGYLTSLRDLNVRRNHLEDL-PEELC-SLPLIRLDFSCNKIS-YLPV-DFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred HhhhHHHHHHHHHhhhhhhhC-CHHHh-CCceeeeecccCcee-ecch-hhhhhhhheeeeeccCCCCCChH
Confidence 344555555555556665543 44444 233566666666666 3442 46666677777777776666544
No 55
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.02 E-value=0.01 Score=44.25 Aligned_cols=71 Identities=24% Similarity=0.167 Sum_probs=56.8
Q ss_pred cCCCCCCCEEeccCcc--CCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530 8 SKGLSKLKSLGLAGIK--LNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~--l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
-...++++.|-+.+|. +.......|..++.|+.||+++|.--+..| ..++.+-+|+.|++++..+...|..
T Consensus 541 ~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP-~~I~~Li~LryL~L~~t~I~~LP~~ 613 (889)
T KOG4658|consen 541 SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP-SSIGELVHLRYLDLSDTGISHLPSG 613 (889)
T ss_pred CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC-hHHhhhhhhhcccccCCCccccchH
Confidence 3456678899888886 444434557889999999999988888888 4689999999999999999866553
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.99 E-value=0.0081 Score=37.65 Aligned_cols=62 Identities=23% Similarity=0.271 Sum_probs=47.9
Q ss_pred CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530 12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~ 76 (92)
-+...+++++|.+-. ...+..++.|..|.+++|+++..-| .--..+++|.+|.+.+|.+...
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l 103 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNSIQEL 103 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeecc-chhhhccccceEEecCcchhhh
Confidence 356678888888774 3467889999999999999997766 2234468899999999988654
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.84 E-value=0.0065 Score=39.04 Aligned_cols=63 Identities=29% Similarity=0.461 Sum_probs=45.0
Q ss_pred CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCC--ccCCccChhhcCCCCCCCEEeccCCcCCC
Q 034530 10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDT--GFKGTFDVREFDSFNNLEVLDLSWNEIDN 75 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n--~l~~~~~~~~~~~~~~L~~l~ls~N~l~~ 75 (92)
.+..++.+.+.+..++. -..+..+++|+.|.++-| .+.+..+. -...+|+|++++++.|+++-
T Consensus 41 ~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred cccchhhhhhhccceee--cccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCcccc
Confidence 34556666666666664 345777899999999999 44444432 23456999999999999986
No 58
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.83 E-value=0.0051 Score=41.19 Aligned_cols=68 Identities=28% Similarity=0.365 Sum_probs=40.1
Q ss_pred cCCCCCCCEEeccCccCCCC----ChhhhhcCCCCcEEecCCCccCCccCh---hhc-CCCCCCCEEeccCCcCCC
Q 034530 8 SKGLSKLKSLGLAGIKLNRS----ILSSLTVFSSLRELHLRDTGFKGTFDV---REF-DSFNNLEVLDLSWNEIDN 75 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~----~~~~~~~~~~L~~l~l~~n~l~~~~~~---~~~-~~~~~L~~l~ls~N~l~~ 75 (92)
+..++.|+.|++..|.++.. ....+..+++|+.+.++++.++..-.. +.+ ...|+|+++++++|.++.
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITR 284 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHH
Confidence 44567777777777776642 223455666777777777776644221 011 225667777777776654
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.79 E-value=0.0014 Score=43.09 Aligned_cols=74 Identities=22% Similarity=0.163 Sum_probs=57.0
Q ss_pred CCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC----CCcchhh
Q 034530 11 LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP----QGKQLKC 86 (92)
Q Consensus 11 l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~----~~~~l~~ 86 (92)
+.+.+.|+.=++.+.++ .-..+++.|+.|.++-|.++..-| +..+++|+.++|..|.|.++... ..++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p---l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP---LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh---HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 45666777777777752 345689999999999999997655 78899999999999999987553 3566666
Q ss_pred HHh
Q 034530 87 YLI 89 (92)
Q Consensus 87 ~~~ 89 (92)
+|+
T Consensus 93 LWL 95 (388)
T KOG2123|consen 93 LWL 95 (388)
T ss_pred Hhh
Confidence 654
No 60
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=94.67 E-value=0.032 Score=23.32 Aligned_cols=18 Identities=50% Similarity=0.656 Sum_probs=13.3
Q ss_pred CCCCCEEeccCCcCCCcC
Q 034530 60 FNNLEVLDLSWNEIDNLV 77 (92)
Q Consensus 60 ~~~L~~l~ls~N~l~~~~ 77 (92)
+++|+.|+++.|+|+.+.
T Consensus 1 L~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 1 LTNLEELDLSQNKIKKIE 18 (26)
T ss_pred CCccCEEECCCCccceec
Confidence 357888888888887653
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.62 E-value=0.082 Score=34.95 Aligned_cols=72 Identities=15% Similarity=0.179 Sum_probs=53.3
Q ss_pred ccCCCCCCCEEeccCccCCCCChhh----hhcCCCCcEEecCCCccCCccChhhc-------------CCCCCCCEEecc
Q 034530 7 VSKGLSKLKSLGLAGIKLNRSILSS----LTVFSSLRELHLRDTGFKGTFDVREF-------------DSFNNLEVLDLS 69 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~----~~~~~~L~~l~l~~n~l~~~~~~~~~-------------~~~~~L~~l~ls 69 (92)
.+-++|.|+..++|.|-+....|+. ++.-+.+.+|.+.+|.+. +.....+ .+-|.|+++.+.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 4568899999999999998766654 456788999999888876 3322222 235789999999
Q ss_pred CCcCCCcCCC
Q 034530 70 WNEIDNLVVP 79 (92)
Q Consensus 70 ~N~l~~~~~~ 79 (92)
.|++.+.+..
T Consensus 166 rNRlengs~~ 175 (388)
T COG5238 166 RNRLENGSKE 175 (388)
T ss_pred cchhccCcHH
Confidence 9998877654
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.32 E-value=0.026 Score=41.15 Aligned_cols=42 Identities=36% Similarity=0.409 Sum_probs=20.2
Q ss_pred CCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530 35 FSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 35 ~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~ 76 (92)
+|+|+.|.+.+=.+...--.....++|+|..||+|+.+++..
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl 188 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL 188 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc
Confidence 555555555543333221112234455556666555555544
No 63
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.03 E-value=0.018 Score=23.22 Aligned_cols=16 Identities=56% Similarity=0.640 Sum_probs=9.9
Q ss_pred CCCCEEeccCCcCCCc
Q 034530 61 NNLEVLDLSWNEIDNL 76 (92)
Q Consensus 61 ~~L~~l~ls~N~l~~~ 76 (92)
++|++|++++|++++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 5678888888877543
No 64
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=93.85 E-value=0.064 Score=36.16 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=35.5
Q ss_pred CCCCCCEEeccCccCCCC----ChhhhhcCCCCcEEecCCCccCCccC---hhhcCCCCCCCEEeccCCcCCC
Q 034530 10 GLSKLKSLGLAGIKLNRS----ILSSLTVFSSLRELHLRDTGFKGTFD---VREFDSFNNLEVLDLSWNEIDN 75 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~----~~~~~~~~~~L~~l~l~~n~l~~~~~---~~~~~~~~~L~~l~ls~N~l~~ 75 (92)
.-++|+.+...+|++... ....+...+.|+...+.+|.+...-. ...+..++.|++||+..|-++.
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~ 227 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL 227 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh
Confidence 445666777777776642 12234445566666666665552211 1234556666666666665544
No 65
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.12 E-value=0.06 Score=35.97 Aligned_cols=43 Identities=19% Similarity=0.279 Sum_probs=25.4
Q ss_pred cCCCCcEEecCCCccCCccChh-hcCCCCCCCEEeccCCcCCCc
Q 034530 34 VFSSLRELHLRDTGFKGTFDVR-EFDSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 34 ~~~~L~~l~l~~n~l~~~~~~~-~~~~~~~L~~l~ls~N~l~~~ 76 (92)
.++.++.+|+.+|++++..... .+.++|.|++|+++.|.+...
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~ 112 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD 112 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc
Confidence 4566666677777666543321 135566667777776666554
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.90 E-value=0.34 Score=27.06 Aligned_cols=60 Identities=20% Similarity=0.301 Sum_probs=26.0
Q ss_pred CCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCC
Q 034530 9 KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWN 71 (92)
Q Consensus 9 ~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N 71 (92)
..+.+++.+.+..+ +.......|..+++++.+.+.. .+. .++...|..+++++.+++..+
T Consensus 32 ~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 32 SNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNLKNIDIPSN 91 (129)
T ss_dssp TT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTECEEEETTT
T ss_pred cccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccccccccccCcc
Confidence 34445556655553 4433334455555566666644 222 122234555666666666543
No 67
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=92.01 E-value=0.12 Score=21.58 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=13.2
Q ss_pred CCCEEeccCCcCCCcCC
Q 034530 62 NLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 62 ~L~~l~ls~N~l~~~~~ 78 (92)
.|+.|++++|+++..|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 57788888888887765
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.90 E-value=0.36 Score=26.93 Aligned_cols=68 Identities=12% Similarity=0.234 Sum_probs=39.7
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCC
Q 034530 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
.+.++.+++.+.+.. .+.......|..+++++.+.+..+ +.. ++...|.++++++.+.+.+ .+.....
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~-i~~~~F~~~~~l~~i~~~~-~~~~i~~ 74 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTS-IGDNAFSNCKSLESITFPN-NLKSIGD 74 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSC-E-TTTTTT-TT-EEEEETS-TT-EE-T
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccc-cceeeeecccccccccccc-ccccccc
Confidence 355677889998874 566555667888989999999875 553 3445788888899999965 4444433
No 69
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=91.89 E-value=0.17 Score=21.27 Aligned_cols=16 Identities=38% Similarity=0.441 Sum_probs=12.4
Q ss_pred CCCCEEeccCCcCCCc
Q 034530 61 NNLEVLDLSWNEIDNL 76 (92)
Q Consensus 61 ~~L~~l~ls~N~l~~~ 76 (92)
+.|++|||++|.+...
T Consensus 2 ~~L~~LdL~~N~i~~~ 17 (28)
T smart00368 2 PSLRELDLSNNKLGDE 17 (28)
T ss_pred CccCEEECCCCCCCHH
Confidence 4688899999988643
No 70
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=90.22 E-value=0.23 Score=35.39 Aligned_cols=66 Identities=20% Similarity=0.193 Sum_probs=38.0
Q ss_pred CCCCCCEEeccCccCCCCC--hhhhhcCCCCcEEecCCC--ccCCccChhhcCCCCCCCEEeccCCcCCCc
Q 034530 10 GLSKLKSLGLAGIKLNRSI--LSSLTVFSSLRELHLRDT--GFKGTFDVREFDSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~~--~~~~~~~~~L~~l~l~~n--~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~ 76 (92)
+.+.+..+.+++|++.... ..--...++|+.|+|++| .+........+++ ..|+.+-+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccccc
Confidence 4667777888888877632 222345678888888887 3332222111222 2356666777766543
No 71
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=89.49 E-value=0.24 Score=33.26 Aligned_cols=58 Identities=22% Similarity=0.218 Sum_probs=33.1
Q ss_pred CCCCCCEEeccCc-cCCCCChhhhhcCCCCcEEecCCCccCCccCh--hhcCCCCCCCEEecc
Q 034530 10 GLSKLKSLGLAGI-KLNRSILSSLTVFSSLRELHLRDTGFKGTFDV--REFDSFNNLEVLDLS 69 (92)
Q Consensus 10 ~l~~L~~l~ls~n-~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~--~~~~~~~~L~~l~ls 69 (92)
.++++..||++.+ .+...+...+.+++.|+++.++++. +..|. -.+...|.|.+||+-
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVF 371 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEec
Confidence 4667777777765 3443344455667777777666544 33332 124556677777654
No 72
>PRK15386 type III secretion protein GogB; Provisional
Probab=86.10 E-value=1.1 Score=31.13 Aligned_cols=33 Identities=9% Similarity=0.109 Sum_probs=18.8
Q ss_pred CCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCC
Q 034530 9 KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRD 45 (92)
Q Consensus 9 ~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~ 45 (92)
..+.+++.|+++++.+... | .-..+|+.|.+++
T Consensus 49 ~~~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsn 81 (426)
T PRK15386 49 EEARASGRLYIKDCDIESL-P---VLPNELTEITIEN 81 (426)
T ss_pred HHhcCCCEEEeCCCCCccc-C---CCCCCCcEEEccC
Confidence 3456677777777766642 3 1123466666655
No 73
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=85.11 E-value=0.094 Score=35.10 Aligned_cols=66 Identities=29% Similarity=0.326 Sum_probs=35.4
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCcc-ChhhcCCCCCCCEEeccCCcC
Q 034530 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTF-DVREFDSFNNLEVLDLSWNEI 73 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~-~~~~~~~~~~L~~l~ls~N~l 73 (92)
+..+.+|+.+.+.++++.+.+-..+.+=..|+.++++.+.--... ..--+.+++.|..|+++.+.+
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhc
Confidence 345566666666666666655555666666666666543211111 111245566666666666644
No 74
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=84.81 E-value=1.9 Score=28.83 Aligned_cols=47 Identities=23% Similarity=0.288 Sum_probs=33.6
Q ss_pred hhcCCCCcEEecCCCccCCccCh---hhcCCCCCCCEEeccCCcCCCcCC
Q 034530 32 LTVFSSLRELHLRDTGFKGTFDV---REFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 32 ~~~~~~L~~l~l~~n~l~~~~~~---~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
+.+|++++..+++.|-+....|. +-+...+.|++|.+++|.+..+..
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG 137 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAG 137 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccch
Confidence 44678888888888888766653 224667788888888887765544
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.69 E-value=0.27 Score=30.91 Aligned_cols=63 Identities=17% Similarity=0.208 Sum_probs=29.7
Q ss_pred CCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhc-CCCCCCCEEeccCC-cCCCc
Q 034530 14 LKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREF-DSFNNLEVLDLSWN-EIDNL 76 (92)
Q Consensus 14 L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~-~~~~~L~~l~ls~N-~l~~~ 76 (92)
++.++.++..+...--..+..+++++.+.+.++.--+..-.+-+ +-.++|+.|+++.| +|+..
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG 167 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh
Confidence 34455555555543334444555555555544332221111111 12466777777755 45544
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=84.10 E-value=0.99 Score=30.64 Aligned_cols=63 Identities=30% Similarity=0.239 Sum_probs=30.4
Q ss_pred CCCCCEEeccCcc-CCCCChhhhh-cCCCCcEEecCCCc-cCCccChhhcCCCCCCCEEeccCCcC
Q 034530 11 LSKLKSLGLAGIK-LNRSILSSLT-VFSSLRELHLRDTG-FKGTFDVREFDSFNNLEVLDLSWNEI 73 (92)
Q Consensus 11 l~~L~~l~ls~n~-l~~~~~~~~~-~~~~L~~l~l~~n~-l~~~~~~~~~~~~~~L~~l~ls~N~l 73 (92)
+.+++.+++++.. ++...-..+. .+++|+.+.+.++. +++.--......+++|++++++.+..
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 4555556655555 3432222222 25666666655554 33222112234456677776665533
No 77
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=80.44 E-value=1.6 Score=36.70 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=27.7
Q ss_pred eccCccCCCCChhhhhcCCCCcEEecCCCccCCc
Q 034530 18 GLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGT 51 (92)
Q Consensus 18 ~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~ 51 (92)
+|++|+|+...+..|..+.+|+.|+|++|.+...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 5788999977677788889999999999887743
No 78
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=74.32 E-value=2.8 Score=16.87 Aligned_cols=16 Identities=44% Similarity=0.414 Sum_probs=11.0
Q ss_pred CCCCCEEeccCCc-CCC
Q 034530 60 FNNLEVLDLSWNE-IDN 75 (92)
Q Consensus 60 ~~~L~~l~ls~N~-l~~ 75 (92)
+++|+.|+++++. +++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 3678888888774 443
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=73.16 E-value=0.043 Score=35.46 Aligned_cols=69 Identities=12% Similarity=0.120 Sum_probs=48.2
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcCCCCCCCEEeccCCcCCCcCCC
Q 034530 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
+..+.....+|++.|++.. .-..|+.++.+..++++-|++.- .| +.++....+.++++-.|+.+..|.+
T Consensus 38 i~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~~-~~-~d~~q~~e~~~~~~~~n~~~~~p~s 106 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIKF-LP-KDAKQQRETVNAASHKNNHSQQPKS 106 (326)
T ss_pred hhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHhh-Ch-hhHHHHHHHHHHHhhccchhhCCcc
Confidence 3345667778888888774 34567777888888888888874 44 3467677777777777776666555
No 80
>PRK15386 type III secretion protein GogB; Provisional
Probab=66.54 E-value=19 Score=25.29 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=19.0
Q ss_pred CCCEEeccCc-cCCCCChhhhhcCCCCcEEecCCC
Q 034530 13 KLKSLGLAGI-KLNRSILSSLTVFSSLRELHLRDT 46 (92)
Q Consensus 13 ~L~~l~ls~n-~l~~~~~~~~~~~~~L~~l~l~~n 46 (92)
+|+.|.++++ .+. ..|..+ .++|+.|.+++|
T Consensus 73 sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 73 ELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred CCcEEEccCCCCcc-cCCchh--hhhhhheEccCc
Confidence 4888888763 332 334333 257788888776
No 81
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=62.42 E-value=7.5 Score=33.21 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=16.6
Q ss_pred ccCCCCCCCEEeccCccCCCCC
Q 034530 7 VSKGLSKLKSLGLAGIKLNRSI 28 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~ 28 (92)
.+..+++|+.|+|++|.+.-.+
T Consensus 14 ~F~~L~sL~~LdLsgNPw~CDC 35 (2740)
T TIGR00864 14 ICANLCNLSEIDLSGNPFECDC 35 (2740)
T ss_pred HhccCCCceEEEeeCCcccccc
Confidence 4556788899999998877543
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=50.65 E-value=9.3 Score=27.71 Aligned_cols=38 Identities=24% Similarity=0.236 Sum_probs=28.4
Q ss_pred cCCCCcEEecCCCccCCccChhh-cCCCCCCCEEeccCC
Q 034530 34 VFSSLRELHLRDTGFKGTFDVRE-FDSFNNLEVLDLSWN 71 (92)
Q Consensus 34 ~~~~L~~l~l~~n~l~~~~~~~~-~~~~~~L~~l~ls~N 71 (92)
+.+.+..+.+++|++...-.... -...|+|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 46778888999999985533222 244689999999999
No 83
>TIGR02167 Liste_lipo_26 bacterial surface protein 26-residue repeat. This model describes a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, L. innocua, Enterococcus faecalis, Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=24.39 E-value=39 Score=13.70 Aligned_cols=11 Identities=36% Similarity=0.516 Sum_probs=5.3
Q ss_pred CCCCCCEEecc
Q 034530 59 SFNNLEVLDLS 69 (92)
Q Consensus 59 ~~~~L~~l~ls 69 (92)
++..+..||++
T Consensus 4 ~~~~~~~ldls 14 (26)
T TIGR02167 4 GCSSLTSLDVS 14 (26)
T ss_pred ccccccccccc
Confidence 34455555544
No 84
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=24.25 E-value=26 Score=14.49 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=10.0
Q ss_pred hcCCCCCCCEEecc
Q 034530 56 EFDSFNNLEVLDLS 69 (92)
Q Consensus 56 ~~~~~~~L~~l~ls 69 (92)
.+..+|+|+.||..
T Consensus 8 Vi~~LPqL~~LD~~ 21 (26)
T smart00446 8 VIRLLPQLRKLDXX 21 (26)
T ss_pred HHHHCCccceeccc
Confidence 35667888888864
Done!