BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034532
(92 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q944J0|SPCS1_ARATH Probable signal peptidase complex subunit 1 OS=Arabidopsis
thaliana GN=At2g22425 PE=2 SV=1
Length = 92
Score = 132 bits (331), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 68/92 (73%), Positives = 75/92 (81%), Gaps = 1/92 (1%)
Query: 1 MDWQGQKLAEHLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTLVTVPNWPFFN 60
MDWQGQKL E LMQILL+ VVA GY SF+ M+LIYAGGVVLTTLVTVPNWPF+N
Sbjct: 1 MDWQGQKLVEQLMQILLVISGVVAVVVGYTTESFRTMMLIYAGGVVLTTLVTVPNWPFYN 60
Query: 61 RHPLKWLDPSEAEKHPKPQ-LAVNSKKKSVKK 91
HPLKWLDPSEAEKHPKP+ ++V SKKK KK
Sbjct: 61 LHPLKWLDPSEAEKHPKPEVVSVASKKKFSKK 92
>sp|Q3T134|SPCS1_BOVIN Signal peptidase complex subunit 1 OS=Bos taurus GN=SPCS1 PE=3
SV=1
Length = 102
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 1 MDWQGQKLAEHLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTLVTVPNWPFFN 60
MD++GQKLAE + Q ++L A+V F GY+ F + I G + L+T+P WP +
Sbjct: 12 MDYKGQKLAEQMFQGIILFSAIVGFIYGYLAEQFGWTVYIVMAGFAFSCLLTLPPWPIYR 71
Query: 61 RHPLKWL---DPSEAEKHP 76
RHPLKWL D S +K P
Sbjct: 72 RHPLKWLPVQDSSTEDKKP 90
>sp|Q9D958|SPCS1_MOUSE Signal peptidase complex subunit 1 OS=Mus musculus GN=Spcs1 PE=2
SV=3
Length = 161
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 1 MDWQGQKLAEHLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTLVTVPNWPFFN 60
MD++GQKLAE + Q ++L A+V F GY+ F + I G + L+T+P WP +
Sbjct: 71 MDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLLTLPPWPIYR 130
Query: 61 RHPLKWLDPSEAEKHPKPQLAVNSKKKSVKK 91
RHPLKWL P L KK +K
Sbjct: 131 RHPLKWL--------PVQDLGTEDKKSGDRK 153
>sp|Q5RF96|SPCS1_PONAB Signal peptidase complex subunit 1 OS=Pongo abelii GN=SPCS1 PE=3
SV=1
Length = 102
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%)
Query: 1 MDWQGQKLAEHLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTLVTVPNWPFFN 60
MD++GQKLAE + Q ++L A+V F GY+ F + I G + L+T+P WP +
Sbjct: 12 MDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLLTLPPWPIYR 71
Query: 61 RHPLKWLDPSEAEKHPK 77
RHPLKWL E+ K
Sbjct: 72 RHPLKWLPVQESSTDDK 88
>sp|Q9Y6A9|SPCS1_HUMAN Signal peptidase complex subunit 1 OS=Homo sapiens GN=SPCS1 PE=1
SV=3
Length = 169
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%)
Query: 1 MDWQGQKLAEHLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTLVTVPNWPFFN 60
MD++GQKLAE + Q ++L A+V F GY+ F + I G + L+T+P WP +
Sbjct: 79 MDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLLTLPPWPIYR 138
Query: 61 RHPLKWLDPSEAEKHPK 77
RHPLKWL E+ K
Sbjct: 139 RHPLKWLPVQESSTDDK 155
>sp|B0FWK4|SPCS1_PIG Signal peptidase complex subunit 1 OS=Sus scrofa GN=SPCS1 PE=2
SV=1
Length = 102
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 1 MDWQGQKLAEHLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTLVTVPNWPFFN 60
MD++GQKLAE + Q ++L A+V F GY+ F + I G + L+T+P WP +
Sbjct: 12 MDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLLTLPPWPIYR 71
Query: 61 RHPLKWL---DPSEAEKHP 76
RHPLKWL D +K P
Sbjct: 72 RHPLKWLPVQDSGTEDKKP 90
>sp|Q54Y83|SPCS1_DICDI Signal peptidase complex subunit 1 OS=Dictyostelium discoideum
GN=spcs1 PE=3 SV=1
Length = 80
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 1 MDWQGQKLAEHLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTLVTVPNWPFFN 60
MD++GQKLAE++ Q ++ F V+ + G+I F + A G L+ ++ +PNW +
Sbjct: 1 MDFEGQKLAEYIYQYTIIIFGVIGWIIGFIKQDFSITFYSVALGTFLSLILCLPNWKIYC 60
Query: 61 RHPLKWLDP 69
+HPL W P
Sbjct: 61 QHPLSWQKP 69
>sp|Q9VAL0|SPCS1_DROME Signal peptidase complex subunit 1 OS=Drosophila melanogaster
GN=Spase12 PE=1 SV=2
Length = 98
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%)
Query: 1 MDWQGQKLAEHLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTLVTVPNWPFFN 60
MD+ GQ AE + ++ F +V G + F + I G VL++L+T+P WP +
Sbjct: 8 MDFAGQGKAERWSRFIITFFGIVGLVYGAFVQQFSQTVYILGAGFVLSSLITIPPWPLYR 67
Query: 61 RHPLKWLDPSEAEKHPKPQLAVNSKKKSVKK 91
R+ LKW P + + + + KK K+
Sbjct: 68 RNALKWQKPIDTDAKSSSSESGDEGKKKKKQ 98
>sp|Q61CQ8|SPCS1_CAEBR Probable signal peptidase complex subunit 1 OS=Caenorhabditis
briggsae GN=CBG12804 PE=3 SV=1
Length = 113
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 1 MDWQGQKLAEHLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTLVTVPNWPF-F 59
+D+QGQK+AE Q++L ++ F GY + G V T L+ +P WPF F
Sbjct: 19 IDFQGQKVAERTYQVILTLAGIIGFFVGYSTQQLSYAMYTVMGAAVFTALIILPPWPFLF 78
Query: 60 NRHPLKWLDPSEAEK 74
++P+ W P E ++
Sbjct: 79 RKNPIVWQTPIEEQE 93
>sp|O44953|SPCS1_CAEEL Probable signal peptidase complex subunit 1 OS=Caenorhabditis
elegans GN=C34B2.10 PE=3 SV=1
Length = 105
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 1 MDWQGQKLAEHLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTLVTVPNWPF-F 59
+D+QGQK+AE Q++L ++ F G+ + G T L+ +P WPF F
Sbjct: 19 IDFQGQKVAERTYQVILTIAGIIGFLVGFWTQQLSYAMFTVLGASAFTALIILPPWPFLF 78
Query: 60 NRHPLKWLDPSEAEK 74
++P+ W P+E ++
Sbjct: 79 RKNPIVWHTPAEPQE 93
>sp|P46965|SPC1_YEAST Signal peptidase complex subunit SPC1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SPC1 PE=1 SV=1
Length = 94
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%)
Query: 1 MDWQGQKLAEHLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTLVTVPNWPFFN 60
+D+ Q+ E Q+ L+ A+VA G+ S ++++ Y V+T + +P +P++N
Sbjct: 16 IDFPSQRKTEKFQQLSLMIGALVACILGFAQQSLKVLLTAYGISCVITLICVLPAYPWYN 75
Query: 61 RHPLKWLDP 69
+ L+W P
Sbjct: 76 KQKLRWAQP 84
>sp|G2TRR4|SPC1_SCHPO Microsomal signal peptidase subunit 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=new19 PE=2 SV=1
Length = 78
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 1 MDWQGQKLAEHLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTLVTVPNWPFFN 60
+D+ GQ + M L AV+++ GY++ +I ++ L LV +P W +N
Sbjct: 8 IDFAGQLRCQKYMNYGLCTSAVISYIYGYLVQDSYCVIKLFLILASLVALVCLPAWSMYN 67
Query: 61 RHPLKWLDPSE 71
++PLK+ E
Sbjct: 68 KNPLKFQKKKE 78
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,384,752
Number of Sequences: 539616
Number of extensions: 1042385
Number of successful extensions: 3111
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3098
Number of HSP's gapped (non-prelim): 15
length of query: 92
length of database: 191,569,459
effective HSP length: 62
effective length of query: 30
effective length of database: 158,113,267
effective search space: 4743398010
effective search space used: 4743398010
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)