Query 034532
Match_columns 92
No_of_seqs 103 out of 205
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 03:51:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034532.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034532hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06645 SPC12: Microsomal sig 100.0 2.5E-37 5.4E-42 199.3 9.1 74 1-74 1-74 (76)
2 KOG4112 Signal peptidase subun 100.0 1.5E-33 3.3E-38 189.2 8.6 72 1-72 16-87 (101)
3 PRK13275 mtrF tetrahydromethan 84.0 2.6 5.7E-05 26.8 4.2 34 1-34 20-54 (67)
4 PF13630 SdpI: SdpI/YhfL prote 81.3 9.5 0.00021 23.0 6.6 27 8-34 25-51 (76)
5 PF04930 FUN14: FUN14 family; 80.0 4.9 0.00011 26.4 4.6 47 17-63 2-54 (100)
6 COG2383 Uncharacterized conser 69.3 12 0.00025 25.9 4.3 26 17-42 22-47 (109)
7 PF09472 MtrF: Tetrahydrometha 68.6 9 0.00019 24.1 3.4 32 1-32 20-52 (64)
8 PF12072 DUF3552: Domain of un 67.1 8.2 0.00018 28.2 3.5 24 13-36 2-25 (201)
9 TIGR00926 2A1704 Peptide:H+ sy 66.7 22 0.00047 30.7 6.4 50 16-65 132-191 (654)
10 PF07835 COX4_pro_2: Bacterial 66.6 14 0.00031 21.3 3.7 23 1-23 9-31 (44)
11 PRK07419 1,4-dihydroxy-2-napht 66.5 35 0.00076 26.7 7.0 47 17-64 99-147 (304)
12 TIGR02235 menA_cyano-plnt 1,4- 61.8 67 0.0014 24.8 7.8 47 17-64 86-134 (285)
13 TIGR02507 MtrF tetrahydrometha 61.6 5.5 0.00012 25.2 1.4 32 1-32 20-52 (65)
14 PF04235 DUF418: Protein of un 61.5 4.8 0.0001 27.8 1.3 60 9-68 96-156 (163)
15 PF12593 McyA_C: Microcystin s 60.0 3.5 7.5E-05 23.8 0.3 13 53-65 25-37 (40)
16 PF03208 PRA1: PRA1 family pro 59.0 44 0.00095 22.8 5.8 35 16-50 98-132 (153)
17 PRK13387 1,4-dihydroxy-2-napht 58.9 55 0.0012 25.6 6.9 47 17-64 94-142 (317)
18 PF10914 DUF2781: Protein of u 58.0 15 0.00033 25.5 3.4 52 3-55 56-107 (150)
19 PF11808 DUF3329: Domain of un 57.8 40 0.00086 21.7 5.1 56 18-81 13-69 (90)
20 PF06295 DUF1043: Protein of u 57.3 13 0.00029 25.5 2.9 13 19-31 4-16 (128)
21 PF05884 ZYG-11_interact: Inte 57.2 11 0.00024 30.1 2.8 51 12-63 108-158 (299)
22 TIGR01301 GPH_sucrose GPH fami 57.0 47 0.001 27.5 6.5 52 7-58 151-223 (477)
23 PF04156 IncA: IncA protein; 56.4 45 0.00098 23.5 5.6 12 17-28 18-29 (191)
24 PF13630 SdpI: SdpI/YhfL prote 55.7 42 0.00092 20.0 6.9 29 4-32 25-53 (76)
25 PRK10334 mechanosensitive chan 55.4 38 0.00082 26.2 5.5 30 16-48 96-125 (286)
26 COG5521 Predicted integral mem 54.7 43 0.00094 26.5 5.6 43 7-49 217-259 (275)
27 PHA03029 hypothetical protein; 54.1 23 0.0005 23.4 3.5 20 12-31 13-32 (92)
28 PF08552 Kei1: Inositolphospho 53.6 17 0.00036 27.0 3.1 44 12-55 21-64 (189)
29 PF07298 NnrU: NnrU protein; 51.1 23 0.0005 26.0 3.5 58 9-66 33-106 (191)
30 PF11151 DUF2929: Protein of u 50.7 12 0.00026 22.7 1.6 20 18-37 8-27 (57)
31 COG5336 Uncharacterized protei 50.5 32 0.00069 24.0 3.9 37 17-53 52-93 (116)
32 PF06127 DUF962: Protein of un 50.0 69 0.0015 20.8 5.8 44 6-49 16-59 (95)
33 PF13829 DUF4191: Domain of un 49.3 47 0.001 25.5 5.0 35 16-50 34-69 (224)
34 PHA00022 VII minor coat protei 48.9 12 0.00026 20.0 1.3 22 10-31 3-24 (28)
35 PRK04897 heat shock protein Ht 48.3 87 0.0019 24.2 6.5 32 1-32 1-32 (298)
36 PRK12887 ubiA tocopherol phyty 48.2 59 0.0013 25.3 5.5 48 8-57 95-142 (308)
37 PRK11677 hypothetical protein; 48.2 21 0.00045 25.2 2.8 14 16-29 9-22 (134)
38 smart00831 Cation_ATPase_N Cat 46.1 28 0.00061 20.2 2.8 18 11-28 46-63 (64)
39 PF11752 DUF3309: Protein of u 44.1 17 0.00037 21.8 1.5 17 45-61 8-24 (49)
40 TIGR00383 corA magnesium Mg(2+ 43.8 19 0.0004 27.3 2.1 55 8-62 256-315 (318)
41 PF11368 DUF3169: Protein of u 43.6 1.4E+02 0.0029 22.3 6.7 22 14-35 12-33 (248)
42 COG5038 Ca2+-dependent lipid-b 43.5 53 0.0012 30.9 5.2 32 15-46 159-190 (1227)
43 PF14015 DUF4231: Protein of u 43.2 31 0.00067 22.1 2.8 23 6-28 15-40 (112)
44 PF11286 DUF3087: Protein of u 43.1 17 0.00036 26.8 1.7 28 7-34 13-40 (165)
45 PRK02870 heat shock protein Ht 42.6 85 0.0019 25.1 5.7 29 1-29 11-44 (336)
46 PF00854 PTR2: POT family; In 42.4 54 0.0012 25.0 4.5 53 10-62 74-129 (372)
47 PF11990 DUF3487: Protein of u 41.6 1.1E+02 0.0023 21.2 5.4 13 22-34 39-51 (121)
48 PF07787 DUF1625: Protein of u 41.3 82 0.0018 23.5 5.2 26 35-60 222-247 (248)
49 PF11688 DUF3285: Protein of u 40.8 50 0.0011 19.5 3.1 21 10-30 21-41 (45)
50 COG4040 Predicted membrane pro 40.6 75 0.0016 21.0 4.3 34 4-37 21-54 (85)
51 PF11712 Vma12: Endoplasmic re 40.2 78 0.0017 21.8 4.6 9 24-32 92-101 (142)
52 PF02532 PsbI: Photosystem II 39.4 63 0.0014 18.2 3.3 24 10-33 4-27 (36)
53 PF11674 DUF3270: Protein of u 39.3 1.1E+02 0.0025 20.2 6.4 45 7-51 35-80 (90)
54 PF10883 DUF2681: Protein of u 39.2 45 0.00098 22.0 3.1 17 15-31 6-22 (87)
55 PF06946 Phage_holin_5: Phage 38.6 41 0.00088 22.6 2.9 19 18-36 42-60 (93)
56 COG1989 PulO Type II secretory 37.6 1E+02 0.0022 22.7 5.2 49 1-49 115-165 (254)
57 PLN02922 prenyltransferase 37.1 2E+02 0.0044 22.5 7.1 27 37-64 125-151 (315)
58 COG4587 ABC-type uncharacteriz 37.0 80 0.0017 25.0 4.7 33 5-37 109-144 (268)
59 PF14143 YrhC: YrhC-like prote 35.7 1.2E+02 0.0026 19.4 5.7 22 6-27 4-25 (72)
60 PF09527 ATPase_gene1: Putativ 35.7 89 0.0019 17.9 4.3 32 16-47 9-41 (55)
61 PF06645 SPC12: Microsomal sig 35.4 1.2E+02 0.0025 19.2 6.4 42 7-48 11-52 (76)
62 PF11808 DUF3329: Domain of un 34.9 1.2E+02 0.0027 19.3 5.4 31 14-44 13-43 (90)
63 PF01478 Peptidase_A24: Type I 34.8 1.1E+02 0.0025 18.9 5.1 49 1-50 13-61 (106)
64 COG3887 Predicted signaling pr 34.0 1.5E+02 0.0033 26.2 6.3 46 6-51 6-51 (655)
65 PF00122 E1-E2_ATPase: E1-E2 A 33.8 1.1E+02 0.0024 21.6 4.8 24 5-28 146-169 (230)
66 PRK01345 heat shock protein Ht 33.7 1.8E+02 0.0039 22.8 6.3 32 15-46 8-39 (317)
67 PF10779 XhlA: Haemolysin XhlA 33.7 47 0.001 20.4 2.4 14 17-30 56-69 (71)
68 PF07423 DUF1510: Protein of u 33.3 62 0.0013 24.6 3.4 13 7-19 10-22 (217)
69 PF12072 DUF3552: Domain of un 33.0 45 0.00098 24.3 2.6 19 17-35 2-20 (201)
70 PLN02878 homogentisate phytylt 33.0 2.3E+02 0.005 22.3 6.7 46 5-50 197-242 (280)
71 TIGR02056 ChlG chlorophyll syn 32.7 1.4E+02 0.003 23.1 5.4 48 14-61 102-154 (306)
72 TIGR00751 menA 1,4-dihydroxy-2 32.6 2.3E+02 0.005 21.8 6.7 23 36-58 110-132 (284)
73 PF03302 VSP: Giardia variant- 32.6 32 0.0007 27.8 2.0 17 15-31 376-392 (397)
74 PRK11146 outer membrane-specif 32.2 44 0.00095 26.1 2.6 25 41-65 382-407 (412)
75 KOG3142 Prenylated rab accepto 32.1 1.2E+02 0.0025 22.7 4.7 35 16-50 125-159 (187)
76 PF03672 UPF0154: Uncharacteri 32.0 42 0.00091 21.1 2.0 16 17-32 3-18 (64)
77 TIGR01476 chlor_syn_BchG bacte 31.7 1.6E+02 0.0036 22.1 5.6 52 9-61 81-132 (283)
78 PRK14585 pgaD putative PGA bio 31.4 59 0.0013 23.3 2.9 57 5-62 9-77 (137)
79 PF15169 DUF4564: Domain of un 31.3 21 0.00045 26.8 0.6 47 16-62 26-74 (187)
80 PF04688 Phage_holin: Phage ly 31.1 92 0.002 18.1 3.3 25 10-34 10-34 (47)
81 PRK11085 magnesium/nickel/coba 30.5 31 0.00067 27.2 1.5 30 6-35 252-281 (316)
82 TIGR03750 conj_TIGR03750 conju 30.5 1.8E+02 0.0039 19.9 5.4 16 15-30 25-40 (111)
83 PF14362 DUF4407: Domain of un 30.5 2.2E+02 0.0048 21.6 6.1 36 16-51 22-59 (301)
84 PRK13658 hypothetical protein; 30.4 55 0.0012 20.2 2.3 18 2-19 3-20 (59)
85 PLN02351 cytochromes b561 fami 30.2 88 0.0019 24.3 3.9 23 40-65 208-230 (242)
86 PF00924 MS_channel: Mechanose 29.6 1.2E+02 0.0026 21.1 4.3 29 15-46 26-54 (206)
87 TIGR01525 ATPase-IB_hvy heavy 29.6 1.4E+02 0.0029 24.9 5.2 26 5-30 162-190 (556)
88 PRK00106 hypothetical protein; 29.2 73 0.0016 27.2 3.6 24 14-37 4-27 (535)
89 PRK13021 secF preprotein trans 28.2 1.9E+02 0.0042 22.7 5.6 53 7-59 226-281 (297)
90 PF13273 DUF4064: Protein of u 28.0 1.6E+02 0.0036 18.6 6.0 18 7-24 2-19 (100)
91 KOG4671 Brain cell membrane pr 28.0 38 0.00083 25.7 1.5 34 2-36 76-109 (201)
92 COG2035 Predicted membrane pro 28.0 80 0.0017 25.0 3.4 53 1-55 106-164 (276)
93 PF07578 LAB_N: Lipid A Biosyn 27.7 1.7E+02 0.0037 18.7 4.3 35 11-46 30-64 (72)
94 PF01618 MotA_ExbB: MotA/TolQ/ 27.7 1.7E+02 0.0036 19.8 4.6 17 32-48 97-113 (139)
95 PRK10535 macrolide transporter 27.7 64 0.0014 27.4 3.0 25 5-31 570-594 (648)
96 PF06341 DUF1056: Protein of u 27.6 1.6E+02 0.0035 18.4 6.0 39 11-49 12-50 (63)
97 PF11120 DUF2636: Protein of u 27.6 76 0.0017 19.8 2.6 27 10-37 4-30 (62)
98 PF12805 FUSC-like: FUSC-like 27.6 1.2E+02 0.0027 22.8 4.3 16 18-33 7-22 (284)
99 PF06305 DUF1049: Protein of u 27.5 1.3E+02 0.0029 17.5 4.1 7 43-49 30-36 (68)
100 cd04301 NAT_SF N-Acyltransfera 27.5 33 0.00072 17.6 0.9 17 2-18 36-52 (65)
101 TIGR02230 ATPase_gene1 F0F1-AT 27.4 2E+02 0.0043 19.3 5.7 35 16-50 51-90 (100)
102 PRK10404 hypothetical protein; 27.0 73 0.0016 21.2 2.6 16 16-31 83-98 (101)
103 TIGR02212 lolCE lipoprotein re 26.6 73 0.0016 24.5 2.9 13 52-64 393-405 (411)
104 COG4327 Predicted membrane pro 26.6 97 0.0021 21.1 3.1 25 11-35 19-43 (101)
105 PF02687 FtsX: FtsX-like perme 26.6 1.4E+02 0.0031 18.2 3.8 19 18-36 56-74 (121)
106 PF12676 DUF3796: Protein of u 26.5 2.2E+02 0.0047 19.5 6.2 45 8-53 58-102 (118)
107 PF05961 Chordopox_A13L: Chord 26.5 51 0.0011 21.0 1.7 26 56-81 20-45 (68)
108 PF01544 CorA: CorA-like Mg2+ 26.4 19 0.00041 26.2 -0.3 29 9-37 233-261 (292)
109 PRK01844 hypothetical protein; 26.2 1.1E+02 0.0024 19.7 3.2 17 16-32 9-25 (72)
110 PRK09546 zntB zinc transporter 26.1 32 0.00069 26.5 0.9 24 12-35 266-289 (324)
111 PF05957 DUF883: Bacterial pro 25.9 81 0.0018 20.0 2.6 16 16-31 76-91 (94)
112 PRK12872 ubiA prenyltransferas 25.8 2.1E+02 0.0047 21.2 5.3 15 41-55 110-124 (285)
113 PRK10132 hypothetical protein; 25.7 79 0.0017 21.4 2.6 16 16-31 89-104 (108)
114 PF06703 SPC25: Microsomal sig 25.5 1.3E+02 0.0028 20.9 3.8 43 14-56 33-78 (162)
115 PF14043 WVELL: WVELL protein 25.3 54 0.0012 21.3 1.7 14 2-15 44-57 (75)
116 TIGR01511 ATPase-IB1_Cu copper 25.3 2E+02 0.0043 24.1 5.4 20 6-25 199-218 (562)
117 KOG0811 SNARE protein PEP12/VA 25.0 67 0.0014 25.2 2.4 26 6-31 238-263 (269)
118 PF08947 BPS: BPS (Between PH 24.9 15 0.00032 22.1 -0.9 7 1-7 11-17 (49)
119 TIGR03647 Na_symport_sm probab 24.7 2E+02 0.0043 18.4 4.6 26 10-35 7-32 (77)
120 PF08138 Sex_peptide: Sex pept 24.6 51 0.0011 20.3 1.4 23 47-69 13-35 (56)
121 PF11127 DUF2892: Protein of u 24.3 1.6E+02 0.0035 17.3 5.3 54 8-62 7-61 (66)
122 PF05038 Cytochrom_B558a: Cyto 24.3 25 0.00055 26.4 0.0 44 14-63 17-60 (186)
123 COG2217 ZntA Cation transport 24.1 1.3E+02 0.0028 26.7 4.2 36 5-40 318-358 (713)
124 PRK10983 putative inner membra 23.7 59 0.0013 25.9 2.0 49 6-61 4-54 (368)
125 PF07245 Phlebovirus_G2: Phleb 23.6 1.4E+02 0.003 25.4 4.2 23 17-39 454-476 (507)
126 PRK13707 conjugal transfer pil 23.3 2.3E+02 0.005 18.8 4.5 18 19-36 30-47 (101)
127 PF03203 MerC: MerC mercury re 23.2 2.3E+02 0.005 18.7 5.3 41 7-47 37-77 (116)
128 PRK10835 hypothetical protein; 22.8 44 0.00095 26.6 1.1 24 47-70 340-364 (373)
129 KOG1558 Fe2+/Zn2+ regulated tr 22.7 2E+02 0.0043 23.1 4.7 54 2-55 11-75 (327)
130 PF11990 DUF3487: Protein of u 22.6 2.6E+02 0.0057 19.2 6.1 25 14-38 27-51 (121)
131 PF13687 DUF4153: Domain of un 22.5 2E+02 0.0042 20.9 4.4 22 39-60 183-204 (217)
132 PRK00523 hypothetical protein; 22.4 1.6E+02 0.0035 18.9 3.5 16 16-31 10-25 (72)
133 TIGR02213 lolE_release lipopro 22.3 89 0.0019 24.5 2.7 14 52-65 393-406 (411)
134 PF12666 PrgI: PrgI family pro 22.2 1.8E+02 0.004 18.2 3.8 8 57-64 63-70 (93)
135 cd01027 TOPRIM_RNase_M5_like T 22.0 65 0.0014 20.3 1.6 15 2-16 55-69 (81)
136 PF06472 ABC_membrane_2: ABC t 21.9 2.5E+02 0.0054 21.1 5.0 17 1-17 125-141 (281)
137 TIGR00894 2A0114euk Na(+)-depe 21.9 3.8E+02 0.0083 20.7 7.6 27 24-50 413-444 (465)
138 PF13131 DUF3951: Protein of u 21.9 1.2E+02 0.0026 18.4 2.6 15 17-31 9-23 (53)
139 PF07895 DUF1673: Protein of u 21.7 2.5E+02 0.0054 20.7 4.9 25 37-68 157-181 (205)
140 PHA03405 hypothetical protein; 21.7 1.6E+02 0.0035 20.7 3.6 26 12-37 70-95 (130)
141 KOG4453 Predicted ER membrane 21.6 75 0.0016 25.0 2.1 52 12-64 70-121 (269)
142 TIGR01523 ATPase-IID_K-Na pota 21.5 2.2E+02 0.0048 26.1 5.3 27 11-37 62-88 (1053)
143 COG0668 MscS Small-conductance 21.5 1.8E+02 0.0038 21.4 4.1 29 16-47 114-142 (316)
144 COG5413 Uncharacterized integr 21.1 3.2E+02 0.0069 20.2 5.2 32 19-50 26-57 (168)
145 PRK13735 conjugal transfer mat 21.1 2.5E+02 0.0053 25.9 5.5 47 10-57 30-76 (942)
146 PF08507 COPI_assoc: COPI asso 21.1 2.8E+02 0.006 18.8 7.1 39 11-49 7-49 (136)
147 COG0472 Rfe UDP-N-acetylmuramy 21.0 3.1E+02 0.0067 21.6 5.5 7 58-64 206-212 (319)
148 PRK10671 copA copper exporting 20.9 3.1E+02 0.0067 24.1 6.0 26 6-31 430-458 (834)
149 COG5346 Predicted membrane pro 20.8 3.2E+02 0.007 19.5 5.9 22 9-30 86-107 (136)
150 PRK10814 outer membrane-specif 20.6 88 0.0019 24.3 2.4 16 16-31 321-336 (399)
151 TIGR01512 ATPase-IB2_Cd heavy 20.5 4E+02 0.0087 22.1 6.3 28 5-32 161-191 (536)
152 PF07436 Curto_V3: Curtovirus 20.5 24 0.00052 23.3 -0.7 7 51-57 2-8 (87)
153 COG5232 SEC62 Preprotein trans 20.5 59 0.0013 25.4 1.3 28 37-64 152-179 (259)
154 PF06432 GPI2: Phosphatidylino 20.5 1.9E+02 0.0042 22.2 4.2 27 33-59 243-269 (282)
155 PF05814 DUF843: Baculovirus p 20.4 2.4E+02 0.0053 18.6 4.0 15 16-30 6-20 (83)
No 1
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=100.00 E-value=2.5e-37 Score=199.27 Aligned_cols=74 Identities=54% Similarity=1.047 Sum_probs=71.9
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCCccccCCCCCccCCCCCcc
Q 034532 1 MDWQGQKLAEHLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTLVTVPNWPFFNRHPLKWLDPSEAEK 74 (92)
Q Consensus 1 iDf~GQ~lae~l~~~il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l~~lvvvP~WP~ynr~pl~W~~p~~~~~ 74 (92)
|||+|||++|+++++++++++++||++||++||+++|+++|++|+++++++++||||+|||||++|++|+.+++
T Consensus 1 iDf~gQ~~ae~l~~~il~~~~iisfi~Gy~~q~~~~~~~~~~~g~~~~~lv~vP~Wp~y~r~p~~W~~~~~~~~ 74 (76)
T PF06645_consen 1 IDFKGQRLAEKLMQYILIISAIISFIVGYITQSFSYTFYIYGAGVVLTLLVVVPPWPFYNRHPLKWLPPKPEKE 74 (76)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeCCcHhhcCCcccCCCCCcccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999887754
No 2
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-33 Score=189.19 Aligned_cols=72 Identities=38% Similarity=0.784 Sum_probs=70.2
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCCccccCCCCCccCCCCC
Q 034532 1 MDWQGQKLAEHLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTLVTVPNWPFFNRHPLKWLDPSEA 72 (92)
Q Consensus 1 iDf~GQ~lae~l~~~il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l~~lvvvP~WP~ynr~pl~W~~p~~~ 72 (92)
|||+||++||+.++.||.++|++||++||++|+|++++|++++|+++++|+++||||+|||||++|.+|..+
T Consensus 16 iDf~gQkkaEr~~q~ilti~aiVg~i~Gf~~Qqls~tvy~vg~~~v~t~li~LPpwP~y~rn~LkW~~Pa~e 87 (101)
T KOG4112|consen 16 IDFPGQKKAERFQQLILTIGAIVGFIYGFAQQQLSVTVYIVGAGFVFTLLITLPPWPWYRRNPLKWAQPAIE 87 (101)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhcCcccccCCccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999998554
No 3
>PRK13275 mtrF tetrahydromethanopterin S-methyltransferase subunit F; Provisional
Probab=84.02 E-value=2.6 Score=26.76 Aligned_cols=34 Identities=18% Similarity=0.495 Sum_probs=23.0
Q ss_pred CCCccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 034532 1 MDWQGQKLAEH-LMQILLLAFAVVAFATGYIMGSF 34 (92)
Q Consensus 1 iDf~GQ~lae~-l~~~il~i~aiisfi~Gy~~qs~ 34 (92)
|+|++|-++.. -+-.-+...++.||++|++..=+
T Consensus 20 i~Yk~qLiaR~~kL~SGv~~~~~~G~aiG~~~Alv 54 (67)
T PRK13275 20 IRYKAQLIARNQKLESGVIATGIIGFAIGFLLALL 54 (67)
T ss_pred HHHHHHHHhhcchhhHHhhhhhHHHHHHHHHHHHH
Confidence 47888888743 33445666788888888876533
No 4
>PF13630 SdpI: SdpI/YhfL protein family
Probab=81.26 E-value=9.5 Score=22.97 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 8 LAEHLMQILLLAFAVVAFATGYIMGSF 34 (92)
Q Consensus 8 lae~l~~~il~i~aiisfi~Gy~~qs~ 34 (92)
.+.+..-..+.++|++.++.|++...+
T Consensus 25 ~a~r~~g~~~~~~Gi~~~~~~~~~~~~ 51 (76)
T PF13630_consen 25 KAHRFAGKIFIIGGIVLLIIGIIILFL 51 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566667777777777776543
No 5
>PF04930 FUN14: FUN14 family; InterPro: IPR007014 This is a family of short proteins found in eukaryotes and some archaea. Although the function of these proteins is not known they may contain transmembrane helices.
Probab=80.01 E-value=4.9 Score=26.35 Aligned_cols=47 Identities=19% Similarity=0.281 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------eeeCCCccccCCC
Q 034532 17 LLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTL------VTVPNWPFFNRHP 63 (92)
Q Consensus 17 l~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l~~l------vvvP~WP~ynr~p 63 (92)
+.++++.|+.+||+..-+..++...+.+.++.+- ++-=||+--+++-
T Consensus 2 l~~G~~~G~~~G~~~kK~~k~~a~~~G~~~l~lq~l~~~G~i~Vnw~kl~~~~ 54 (100)
T PF04930_consen 2 LGIGSVSGLCAGYAIKKVSKLAAFLVGGGFLLLQYLASKGYIKVNWDKLEKDV 54 (100)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeEEECHHHHHHHH
Confidence 4578999999999999999987666666555542 3445666554443
No 6
>COG2383 Uncharacterized conserved protein [Function unknown]
Probab=69.31 E-value=12 Score=25.90 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 17 LLAFAVVAFATGYIMGSFQMMILIYA 42 (92)
Q Consensus 17 l~i~aiisfi~Gy~~qs~~~t~~~~~ 42 (92)
+-++++++|+.||...-+-..+....
T Consensus 22 lG~G~ilGf~~GyAlkk~ikvvl~li 47 (109)
T COG2383 22 LGIGGILGFAAGYALKKAIKVVLLLI 47 (109)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999988766544333
No 7
>PF09472 MtrF: Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF); InterPro: IPR013347 Many archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This domain is mostly found in MtrF, where it covers the entire length of the protein. This polypeptide is one of eight subunits of the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase complex found in methanogenic archaea. This is a membrane-associated enzyme complex that uses methyl-transfer reactions to drive a sodium-ion pump []. MtrF itself is involved in the transfer of the methyl group from N5-methyltetrahydromethanopterin to coenzyme M. Subsequently, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the C-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016020 membrane
Probab=68.59 E-value=9 Score=24.07 Aligned_cols=32 Identities=19% Similarity=0.464 Sum_probs=19.1
Q ss_pred CCCccHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 034532 1 MDWQGQKLAE-HLMQILLLAFAVVAFATGYIMG 32 (92)
Q Consensus 1 iDf~GQ~lae-~l~~~il~i~aiisfi~Gy~~q 32 (92)
++|++|-.+. +-+-.-+...++.||++|++.-
T Consensus 20 i~Yk~qLiaR~~kL~SGv~~~~~~GfaiG~~~A 52 (64)
T PF09472_consen 20 IRYKAQLIARDQKLESGVMATGIKGFAIGFLFA 52 (64)
T ss_pred HHHHHHHhhhcchhHHHHhhhhhHHHHHHHHHH
Confidence 3567776663 2334455666777777776543
No 8
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=67.15 E-value=8.2 Score=28.25 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 13 MQILLLAFAVVAFATGYIMGSFQM 36 (92)
Q Consensus 13 ~~~il~i~aiisfi~Gy~~qs~~~ 36 (92)
+-++++++.++|+++||+......
T Consensus 2 ~ii~~i~~~~vG~~~G~~~~~~~~ 25 (201)
T PF12072_consen 2 IIIIAIVALIVGIGIGYLVRKKIN 25 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888888765544
No 9
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=66.67 E-value=22 Score=30.66 Aligned_cols=50 Identities=16% Similarity=0.257 Sum_probs=33.3
Q ss_pred HHHHHHHHH-HHHHHHHHH---------HHHHHHHHHHHHHHHHheeeCCCccccCCCCC
Q 034532 16 LLLAFAVVA-FATGYIMGS---------FQMMILIYAGGVVLTTLVTVPNWPFFNRHPLK 65 (92)
Q Consensus 16 il~i~aiis-fi~Gy~~qs---------~~~t~~~~~~g~~l~~lvvvP~WP~ynr~pl~ 65 (92)
.+-++++++ .+++|+.++ +.....+-+++.++++++.+.-+++|+++|.+
T Consensus 132 ~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~ 191 (654)
T TIGR00926 132 AINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPK 191 (654)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCC
Confidence 344444444 566676654 44566667777888888889999999776543
No 10
>PF07835 COX4_pro_2: Bacterial aa3 type cytochrome c oxidase subunit IV; InterPro: IPR012422 Bacterial cytochrome c oxidase is found bound to the to the cell membrane, where it is involved in the generation of the transmembrane proton electrochemical gradient. It is composed of four subunits. Subunit IV consists of one transmembrane helix that does not interact directly with the other subunits, but maintains its position by indirect contacts via phospholipid molecules found in the structure. The function of subunit IV is as yet unknown []. ; PDB: 1QLE_D 1M57_J 1M56_J.
Probab=66.56 E-value=14 Score=21.34 Aligned_cols=23 Identities=13% Similarity=-0.090 Sum_probs=14.9
Q ss_pred CCCccHHHHHHHHHHHHHHHHHH
Q 034532 1 MDWQGQKLAEHLMQILLLAFAVV 23 (92)
Q Consensus 1 iDf~GQ~lae~l~~~il~i~aii 23 (92)
|||+.|+...+.+-.....++++
T Consensus 9 MD~~~he~Ty~gFi~~~k~~~~~ 31 (44)
T PF07835_consen 9 MDIAEHEKTYDGFIKLTKWGTIA 31 (44)
T ss_dssp S--HHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999988776655544443
No 11
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=66.45 E-value=35 Score=26.71 Aligned_cols=47 Identities=11% Similarity=0.019 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHheeeCCCccccCCCC
Q 034532 17 LLAFAVVAFATGYIMGSF--QMMILIYAGGVVLTTLVTVPNWPFFNRHPL 64 (92)
Q Consensus 17 l~i~aiisfi~Gy~~qs~--~~t~~~~~~g~~l~~lvvvP~WP~ynr~pl 64 (92)
..+...++++.|.+.--. -..+.+.++|++++..=+-||+|. +++++
T Consensus 99 ~~~~~~~a~~~Gl~L~~~~g~~~l~ig~~g~~~~~~YT~gP~~l-~y~gL 147 (304)
T PRK07419 99 ANLFLLLGLLGILAIALQSDWTVLGLVLLCCFLGYLYQGPPFRL-GYQGL 147 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhheccCCCccc-CCCCc
Confidence 333334455555433211 234556667777788888899994 55554
No 12
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=61.75 E-value=67 Score=24.78 Aligned_cols=47 Identities=11% Similarity=0.043 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHheeeCCCccccCCCC
Q 034532 17 LLAFAVVAFATGYIMGSF--QMMILIYAGGVVLTTLVTVPNWPFFNRHPL 64 (92)
Q Consensus 17 l~i~aiisfi~Gy~~qs~--~~t~~~~~~g~~l~~lvvvP~WP~ynr~pl 64 (92)
..+...++++.|.+.--. -..+.+.++|++++..=+-||+|. .++++
T Consensus 86 ~~~~~~ia~~~g~~L~~~~~~~~l~lg~~g~~~~~~Yt~gP~~l-~y~gL 134 (285)
T TIGR02235 86 ANFFLLIGLVGIAALSWRWQITVLALVGLCCFLGYLYQGPPFRL-GYQGL 134 (285)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCccc-CCCCc
Confidence 334444444444333222 233456666777888889999994 55554
No 13
>TIGR02507 MtrF tetrahydromethanopterin S-methyltransferase, F subunit. coenzyme M methyltransferase in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methy-transfer reaction to drive sodium-ion pump. Archaea domain, have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=61.59 E-value=5.5 Score=25.20 Aligned_cols=32 Identities=13% Similarity=0.370 Sum_probs=19.0
Q ss_pred CCCccHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 034532 1 MDWQGQKLAEHL-MQILLLAFAVVAFATGYIMG 32 (92)
Q Consensus 1 iDf~GQ~lae~l-~~~il~i~aiisfi~Gy~~q 32 (92)
+||+.|-++... +-.-+...++.||++|++..
T Consensus 20 i~YK~qLiaR~~kL~SGv~~~~~~G~~iG~~~A 52 (65)
T TIGR02507 20 IDYRVQLITRDIGLASGVQTTTITGLAYGFLFA 52 (65)
T ss_pred HHHHHHHHhhccchhhhhhhhhhHHHHHHHHHH
Confidence 467777777432 23344555677777776543
No 14
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=61.47 E-value=4.8 Score=27.79 Aligned_cols=60 Identities=22% Similarity=0.340 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCCc-cccCCCCCccC
Q 034532 9 AEHLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTLVTVPNWP-FFNRHPLKWLD 68 (92)
Q Consensus 9 ae~l~~~il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l~~lvvvP~WP-~ynr~pl~W~~ 68 (92)
+.-+.|.++...-.-++..|+.-+.=......+..++.+..++.---|- .|++=|+||+=
T Consensus 96 T~Yi~qsii~~~lf~~~~l~l~~~~~~~~~~~~~~~i~~~q~~~s~~W~~~f~~GPlE~l~ 156 (163)
T PF04235_consen 96 TNYILQSIIGTLLFYGYGLGLFGHLSPAQSLLIALGIWVVQLLFSYLWLRRFRRGPLEWLW 156 (163)
T ss_pred HHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHH
Confidence 3444454444444444455533322111222222233333334444454 78899999963
No 15
>PF12593 McyA_C: Microcystin synthetase C terminal; InterPro: IPR022583 This domain of unknown function is found in cyanobacteria and is approximately 40 amino acids in length. It is found in association with PF00501 from PFAM, PF00668 from PFAM, PF00550 from PFAM, and PF08242 from PFAM and contains a conserved YAN motif. This region is found in microcystin synthetase, which is one of a number of proteins involved in microcystin toxin synthesis []. Microcystins form a large family of small cyclic heptapeptides harbouring extensive modifications in amino acid residue composition and functional group chemistry. These peptide hepatotoxins contain a range of non-proteinogenic amino acids and unusual peptide bonds, and are typically N-methylated. They are synthesized on large enzyme complexes consisting of non-ribosomal peptide synthetases and polyketide synthases [].
Probab=60.02 E-value=3.5 Score=23.77 Aligned_cols=13 Identities=38% Similarity=1.237 Sum_probs=11.2
Q ss_pred eCCCccccCCCCC
Q 034532 53 VPNWPFFNRHPLK 65 (92)
Q Consensus 53 vP~WP~ynr~pl~ 65 (92)
=|+|-.|..||++
T Consensus 25 kpdWq~YAN~PLq 37 (40)
T PF12593_consen 25 KPDWQLYANHPLQ 37 (40)
T ss_pred CchhhhhcCCCCC
Confidence 3799999999985
No 16
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=59.01 E-value=44 Score=22.77 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034532 16 LLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTL 50 (92)
Q Consensus 16 il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l~~l 50 (92)
.+...+++++++-|++......+.+.+++++++++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~lvl~ 132 (153)
T PF03208_consen 98 VLLALLIVSILLLFFTSAGLTLFWSLGASVLLVLL 132 (153)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33455566677778788777777777777777664
No 17
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=58.87 E-value=55 Score=25.59 Aligned_cols=47 Identities=26% Similarity=0.260 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHheeeCCCccccCCCC
Q 034532 17 LLAFAVVAFATGYIMGSF--QMMILIYAGGVVLTTLVTVPNWPFFNRHPL 64 (92)
Q Consensus 17 l~i~aiisfi~Gy~~qs~--~~t~~~~~~g~~l~~lvvvP~WP~ynr~pl 64 (92)
..+..++|++.|.+.--. ...+.+.++|++++..=+-||+|. .++++
T Consensus 94 ~~~~~~ia~~~Gl~L~~~~g~~~l~igl~g~~~~~~Yt~gP~~l-~y~gL 142 (317)
T PRK13387 94 ILLMYVVAAILGVYLCMNTSWLLLVIGLICFAIGILYTGGPLPL-SRMPL 142 (317)
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhhhhcCCCccc-ccCcc
Confidence 344444444444333211 223455667777777888899984 55553
No 18
>PF10914 DUF2781: Protein of unknown function (DUF2781); InterPro: IPR016964 This group represents a predicted transmembrane protein 97.
Probab=57.98 E-value=15 Score=25.53 Aligned_cols=52 Identities=21% Similarity=0.323 Sum_probs=43.6
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCC
Q 034532 3 WQGQKLAEHLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTLVTVPN 55 (92)
Q Consensus 3 f~GQ~lae~l~~~il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l~~lvvvP~ 55 (92)
|+++-..|-+.|.=+.+.++-++.-| -...+.....+|++.++.|.+.|+-.
T Consensus 56 f~~f~~~El~~qlP~~~~~~~~l~~~-~~~~~~~~~lvYg~~~~~Tt~~cl~~ 107 (150)
T PF10914_consen 56 FKSFVWIELFFQLPFFFYAIYALLKG-GSPWIRLLLLVYGVHVATTTLPCLGE 107 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 56777889999999999999999888 66788888899999999888777654
No 19
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=57.76 E-value=40 Score=21.69 Aligned_cols=56 Identities=20% Similarity=0.437 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCCccccCCCC-CccCCCCCccCCcchhh
Q 034532 18 LAFAVVAFATGYIMGSFQMMILIYAGGVVLTTLVTVPNWPFFNRHPL-KWLDPSEAEKHPKPQLA 81 (92)
Q Consensus 18 ~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l~~lvvvP~WP~ynr~pl-~W~~p~~~~~~~~~~~~ 81 (92)
.+..++++++|++.+.+...+ +++.++-+ -|-.|+-+.+ +|+......+.|.+.+.
T Consensus 13 ~~~~l~~~lvG~~~g~~~~~l---~~~l~~~l-----~wh~~~l~rL~~WL~~~~~~~pP~~~G~ 69 (90)
T PF11808_consen 13 LLLLLAAALVGWLFGHLWWAL---LLGLLLYL-----FWHLYQLYRLERWLRNPRKDEPPEGSGI 69 (90)
T ss_pred HHHHHHHHHHHHHHhHHHHHH---HHHHHHHH-----HHHHHHHHHHHHHHhCCCCCCCCCCCCc
Confidence 334455666666666554332 22222111 1777765554 57755444444444433
No 20
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=57.30 E-value=13 Score=25.52 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 034532 19 AFAVVAFATGYIM 31 (92)
Q Consensus 19 i~aiisfi~Gy~~ 31 (92)
++.+||+++||+.
T Consensus 4 i~lvvG~iiG~~~ 16 (128)
T PF06295_consen 4 IGLVVGLIIGFLI 16 (128)
T ss_pred HHHHHHHHHHHHH
Confidence 3444445555443
No 21
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=57.24 E-value=11 Score=30.13 Aligned_cols=51 Identities=22% Similarity=0.470 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCCccccCCC
Q 034532 12 LMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTLVTVPNWPFFNRHP 63 (92)
Q Consensus 12 l~~~il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l~~lvvvP~WP~ynr~p 63 (92)
+..++|+.+++.+|+=||++..+.-. ++--.|.++...+++|.+=+|+-|.
T Consensus 108 ~ssIlLl~~Siss~iG~YiLapl~~~-i~~~~gAaila~iviP~~~~y~ln~ 158 (299)
T PF05884_consen 108 WSSILLLGFSISSFIGGYILAPLFGI-IFGPFGAAILAYIVIPLIAYYYLNK 158 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHhhccc
Confidence 34456777777788888988877654 5555667777788999999885544
No 22
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=57.02 E-value=47 Score=27.53 Aligned_cols=52 Identities=21% Similarity=0.313 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHH---heeeCCCcc
Q 034532 7 KLAEHLMQILLLAFAVVAFATGYIMG------------------SFQMMILIYAGGVVLTT---LVTVPNWPF 58 (92)
Q Consensus 7 ~lae~l~~~il~i~aiisfi~Gy~~q------------------s~~~t~~~~~~g~~l~~---lvvvP~WP~ 58 (92)
+.+..+.+....++++++...|.+.. +++..+++-++.++++. +..++..|.
T Consensus 151 ~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~ 223 (477)
T TIGR01301 151 RIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPL 223 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence 46788888888999999999887641 45555555444444444 345677664
No 23
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=56.42 E-value=45 Score=23.45 Aligned_cols=12 Identities=25% Similarity=0.227 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 034532 17 LLAFAVVAFATG 28 (92)
Q Consensus 17 l~i~aiisfi~G 28 (92)
++++|+++++++
T Consensus 18 li~~gI~~Lv~~ 29 (191)
T PF04156_consen 18 LIASGIAALVLF 29 (191)
T ss_pred HHHHHHHHHHHH
Confidence 344444443333
No 24
>PF13630 SdpI: SdpI/YhfL protein family
Probab=55.72 E-value=42 Score=20.02 Aligned_cols=29 Identities=7% Similarity=0.209 Sum_probs=23.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 4 QGQKLAEHLMQILLLAFAVVAFATGYIMG 32 (92)
Q Consensus 4 ~GQ~lae~l~~~il~i~aiisfi~Gy~~q 32 (92)
++||.+-++.-..-++..+++++......
T Consensus 25 ~a~r~~g~~~~~~Gi~~~~~~~~~~~~~~ 53 (76)
T PF13630_consen 25 KAHRFAGKIFIIGGIVLLIIGIIILFLNK 53 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999988888888888888776654
No 25
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=55.40 E-value=38 Score=26.19 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 16 LLLAFAVVAFATGYIMGSFQMMILIYAGGVVLT 48 (92)
Q Consensus 16 il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l~ 48 (92)
++...|++|+++|+..|+. +--+.+|+.+.
T Consensus 96 l~a~~G~~glaiG~a~q~~---l~N~~sGi~i~ 125 (286)
T PRK10334 96 VIAVLGAAGLAVGLALQGS---LSNLAAGVLLV 125 (286)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 3445566778888888865 44455665543
No 26
>COG5521 Predicted integral membrane protein [Function unknown]
Probab=54.68 E-value=43 Score=26.47 Aligned_cols=43 Identities=28% Similarity=0.307 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 7 KLAEHLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTT 49 (92)
Q Consensus 7 ~lae~l~~~il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l~~ 49 (92)
|-+..++--++.+=++++.++|++.||+-..+-+=-+|+++-+
T Consensus 217 kE~~~l~lnclalP~laa~algff~qd~ttim~vqs~g~vLml 259 (275)
T COG5521 217 KEAASLALNCLALPALAAAALGFFHQDLTTIMMVQSCGVVLML 259 (275)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Confidence 3455566677888899999999999999988888877777544
No 27
>PHA03029 hypothetical protein; Provisional
Probab=54.13 E-value=23 Score=23.44 Aligned_cols=20 Identities=15% Similarity=0.610 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034532 12 LMQILLLAFAVVAFATGYIM 31 (92)
Q Consensus 12 l~~~il~i~aiisfi~Gy~~ 31 (92)
+.-+|+.+.+++|.+.||..
T Consensus 13 ~iiyiilila~igiiwg~ll 32 (92)
T PHA03029 13 IIIYIILILAIIGIIWGFLL 32 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567788899999999975
No 28
>PF08552 Kei1: Inositolphosphorylceramide synthase subunit Kei1; InterPro: IPR013862 This entry indicates Golgi proteins of unknown function.
Probab=53.60 E-value=17 Score=26.98 Aligned_cols=44 Identities=16% Similarity=0.241 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCC
Q 034532 12 LMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTLVTVPN 55 (92)
Q Consensus 12 l~~~il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l~~lvvvP~ 55 (92)
++|.+-.+-|+++.+.|+-..=++.++|+|-..++......+|.
T Consensus 21 l~NK~sG~YGlLAlfTG~~ls~~Q~s~YlySi~~L~~~~~~l~~ 64 (189)
T PF08552_consen 21 LFNKVSGLYGLLALFTGHPLSFLQLSMYLYSILALVLFAWGLPH 64 (189)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHH
Confidence 44555566677777777755556666666666666666555553
No 29
>PF07298 NnrU: NnrU protein; InterPro: IPR009915 This family consists of several plant and bacterial NnrU proteins. NnrU is thought to be involved in the reduction of nitric oxide. The exact function of NnrU is unclear. It is thought however that NnrU and perhaps NnrT are required for expression of both nirK and nor [].
Probab=51.09 E-value=23 Score=25.99 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHheeeCCCc--ccc--CCCCCc
Q 034532 9 AEHLMQILLLAFAVVAFATGYIMGSFQ------------MMILIYAGGVVLTTLVTVPNWP--FFN--RHPLKW 66 (92)
Q Consensus 9 ae~l~~~il~i~aiisfi~Gy~~qs~~------------~t~~~~~~g~~l~~lvvvP~WP--~yn--r~pl~W 66 (92)
.++....++++.+++-.++||-.-+.. .+......++++...-..|+.| +|+ |||.-|
T Consensus 33 ~y~~~ysllSl~~l~lii~~~~~a~~~~~lw~~~~~~~~l~~~lm~~a~il~~~a~~~~~~~~i~r~~RHP~l~ 106 (191)
T PF07298_consen 33 GYRGLYSLLSLAGLVLIIWGYRSAPFVPPLWDPPPWLRHLANLLMLLAFILLVAALFPPNPFSIYRITRHPMLL 106 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCcccCCchhHHHHHHHHHHHHHHHHHHHhccCcchHHHHHhcCchHH
Confidence 456677778888888888888776655 2334445555555556677777 775 898866
No 30
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=50.67 E-value=12 Score=22.66 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034532 18 LAFAVVAFATGYIMGSFQMM 37 (92)
Q Consensus 18 ~i~aiisfi~Gy~~qs~~~t 37 (92)
.=+.+++.++||+.+++...
T Consensus 8 fWs~il~~vvgyI~ssL~~~ 27 (57)
T PF11151_consen 8 FWSFILGEVVGYIGSSLTGV 27 (57)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 33567788888888877644
No 31
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.54 E-value=32 Score=24.03 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHheee
Q 034532 17 LLAFAVVAFATGYIMGSFQMM-----ILIYAGGVVLTTLVTV 53 (92)
Q Consensus 17 l~i~aiisfi~Gy~~qs~~~t-----~~~~~~g~~l~~lvvv 53 (92)
++.+.++|..+||++.-|..| +...+.|++...+.++
T Consensus 52 fIsGilVGa~iG~llD~~agTsPwglIv~lllGf~AG~lnv~ 93 (116)
T COG5336 52 FISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNVL 93 (116)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 566778899999999988753 4444556665555543
No 32
>PF06127 DUF962: Protein of unknown function (DUF962); InterPro: IPR009305 This family consists of several eukaryotic and prokaryotic proteins of unknown function. The yeast protein P25338 from SWISSPROT has been found to be non-essential for cell growth.
Probab=50.04 E-value=69 Score=20.76 Aligned_cols=44 Identities=5% Similarity=0.086 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 6 QKLAEHLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTT 49 (92)
Q Consensus 6 Q~lae~l~~~il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l~~ 49 (92)
|+..++.++.+-+-..+.+.++.....+....+.+.++|-++..
T Consensus 16 ~~~~n~~lH~igvp~~~~~~~~~~~~~~~~~~l~~~~~g~~~q~ 59 (95)
T PF06127_consen 16 RNPINRALHFIGVPLIIFSLLLLLARIPWWLALAVFVVGWGLQF 59 (95)
T ss_pred CCHhhHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 45678888888888888888887777776666666666665443
No 33
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=49.32 E-value=47 Score=25.46 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Q 034532 16 LLLAFAVVAFATGYIMGSFQMMI-LIYAGGVVLTTL 50 (92)
Q Consensus 16 il~i~aiisfi~Gy~~qs~~~t~-~~~~~g~~l~~l 50 (92)
.+....++++++|+++.+.-+.+ ...++|++++++
T Consensus 34 a~l~~~~v~v~ig~l~~~~~~~~i~gi~~g~l~am~ 69 (224)
T PF13829_consen 34 AFLGPIAVFVLIGLLFGSWWYWLIIGILLGLLAAMI 69 (224)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 44455566788888888644333 333444444444
No 34
>PHA00022 VII minor coat protein
Probab=48.93 E-value=12 Score=20.00 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034532 10 EHLMQILLLAFAVVAFATGYIM 31 (92)
Q Consensus 10 e~l~~~il~i~aiisfi~Gy~~ 31 (92)
+.+++.++.++-+++|..|-++
T Consensus 3 D~i~q~v~~lglVi~FgLG~It 24 (28)
T PHA00022 3 DTIYQVVIALGLVICFGLGAIT 24 (28)
T ss_pred HhHHHHHHHHhHHHhhccceee
Confidence 5688888888888888888665
No 35
>PRK04897 heat shock protein HtpX; Provisional
Probab=48.29 E-value=87 Score=24.17 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=17.3
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 1 MDWQGQKLAEHLMQILLLAFAVVAFATGYIMG 32 (92)
Q Consensus 1 iDf~GQ~lae~l~~~il~i~aiisfi~Gy~~q 32 (92)
|+|+-|+.-..-...++....++-.++||...
T Consensus 1 ~~~~~~~~n~~~t~~ll~~~~~~~~~~g~~~~ 32 (298)
T PRK04897 1 MLYEQIASNKRKTVFLLVVFFLLLALVGAAVG 32 (298)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555444444455555666666676544
No 36
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=48.23 E-value=59 Score=25.33 Aligned_cols=48 Identities=10% Similarity=0.260 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCCc
Q 034532 8 LAEHLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTLVTVPNWP 57 (92)
Q Consensus 8 lae~l~~~il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l~~lvvvP~WP 57 (92)
..++-...+..+.+++|++.|+..+- .++.+.+++.++..+=..||++
T Consensus 95 ls~~~a~~~~~~~~~lal~la~~~~~--~~~~~~~~~~~lg~~Ys~pP~r 142 (308)
T PRK12887 95 FSRRQGQRIVIITGILALILAALLGP--WLLITVGISLLIGTAYSLPPIR 142 (308)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHcCCchh
Confidence 34445566677888888888877652 3455566666666666677654
No 37
>PRK11677 hypothetical protein; Provisional
Probab=48.21 E-value=21 Score=25.22 Aligned_cols=14 Identities=7% Similarity=-0.109 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 034532 16 LLLAFAVVAFATGY 29 (92)
Q Consensus 16 il~i~aiisfi~Gy 29 (92)
.++++++|||++|.
T Consensus 9 ~livG~iiG~~~~R 22 (134)
T PRK11677 9 GLVVGIIIGAVAMR 22 (134)
T ss_pred HHHHHHHHHHHHHh
Confidence 34444444444444
No 38
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=46.10 E-value=28 Score=20.17 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034532 11 HLMQILLLAFAVVAFATG 28 (92)
Q Consensus 11 ~l~~~il~i~aiisfi~G 28 (92)
.-+.+++++.++++++.|
T Consensus 46 ~p~~~iL~~~a~is~~~~ 63 (64)
T smart00831 46 NPLIYILLAAAVLSALLG 63 (64)
T ss_pred hHHHHHHHHHHHHHHHHc
Confidence 345667778888888776
No 39
>PF11752 DUF3309: Protein of unknown function (DUF3309); InterPro: IPR021738 This family is conserved in bacteria but its function is not known.
Probab=44.15 E-value=17 Score=21.83 Aligned_cols=17 Identities=24% Similarity=0.778 Sum_probs=12.8
Q ss_pred HHHHHheeeCCCccccC
Q 034532 45 VVLTTLVTVPNWPFFNR 61 (92)
Q Consensus 45 ~~l~~lvvvP~WP~ynr 61 (92)
.++.++-.+|.||+-|.
T Consensus 8 Lil~LigalP~wp~sr~ 24 (49)
T PF11752_consen 8 LILLLIGALPTWPYSRG 24 (49)
T ss_pred HHHHHHhcCCCCCCCCC
Confidence 45667788999998664
No 40
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=43.82 E-value=19 Score=27.30 Aligned_cols=55 Identities=15% Similarity=0.323 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHheeeCCCccccCC
Q 034532 8 LAEHLMQILLLAFAVVAFATGYIMGSFQMM-----ILIYAGGVVLTTLVTVPNWPFFNRH 62 (92)
Q Consensus 8 lae~l~~~il~i~aiisfi~Gy~~qs~~~t-----~~~~~~g~~l~~lvvvP~WP~ynr~ 62 (92)
..-+.++++-+++....|+.|++--+|..| -+.|.+.+++.+++++=.+-+|+|.
T Consensus 256 ~~mk~LTvvt~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~~~~~~fkrk 315 (318)
T TIGR00383 256 EIMKILTVVSTIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIALGPLIYFRRK 315 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344556667778888899999988777621 2344444444444444344455543
No 41
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=43.58 E-value=1.4e+02 Score=22.30 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034532 14 QILLLAFAVVAFATGYIMGSFQ 35 (92)
Q Consensus 14 ~~il~i~aiisfi~Gy~~qs~~ 35 (92)
-..+++++++|.++|+....+.
T Consensus 12 ~~~illg~~iGg~~G~~~~~~~ 33 (248)
T PF11368_consen 12 LLLILLGGLIGGFIGFFIGRIG 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777655544
No 42
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=43.53 E-value=53 Score=30.94 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 15 ILLLAFAVVAFATGYIMGSFQMMILIYAGGVV 46 (92)
Q Consensus 15 ~il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~ 46 (92)
.++++++++||++||+-=++..++.+++.++.
T Consensus 159 ~i~l~~~v~Swifg~~~fs~~slffii~~~~~ 190 (1227)
T COG5038 159 AIVLIGSVASWIFGYLGFSFASLFFIILVTMY 190 (1227)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888999999999999998888877766654
No 43
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=43.22 E-value=31 Score=22.05 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHH
Q 034532 6 QKLAEHLMQILLL---AFAVVAFATG 28 (92)
Q Consensus 6 Q~lae~l~~~il~---i~aiisfi~G 28 (92)
|++-..+....++ ++++++.+.+
T Consensus 15 q~~~~~~~~~~i~~~~~~a~i~~l~~ 40 (112)
T PF14015_consen 15 QRRYRRLRIASIILSVLGAVIPVLAS 40 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444 4455555333
No 44
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=43.11 E-value=17 Score=26.77 Aligned_cols=28 Identities=11% Similarity=0.231 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 7 KLAEHLMQILLLAFAVVAFATGYIMGSF 34 (92)
Q Consensus 7 ~lae~l~~~il~i~aiisfi~Gy~~qs~ 34 (92)
|..++.+-.++..++++|+.+|-..=.+
T Consensus 13 k~~n~v~~~~v~~lai~sl~~s~llI~l 40 (165)
T PF11286_consen 13 KHLNRVIVACVASLAILSLAFSQLLIAL 40 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666777777777554433
No 45
>PRK02870 heat shock protein HtpX; Provisional
Probab=42.56 E-value=85 Score=25.07 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=14.3
Q ss_pred CCCccHHHHHHHHHH-----HHHHHHHHHHHHHH
Q 034532 1 MDWQGQKLAEHLMQI-----LLLAFAVVAFATGY 29 (92)
Q Consensus 1 iDf~GQ~lae~l~~~-----il~i~aiisfi~Gy 29 (92)
|||+-|..-+++-+. ...+..++|+.+|+
T Consensus 11 ~~~~~~i~~n~~kt~~l~~~~~~l~~~~g~~~~~ 44 (336)
T PRK02870 11 VDWRKVIRRNRLKTRAVIATYLAIFLFIGLLVDA 44 (336)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 577777444443333 33334445555554
No 46
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=42.44 E-value=54 Score=25.03 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHheeeCCCccccCC
Q 034532 10 EHLMQILLLAFAVVA-FATGYIMGS--FQMMILIYAGGVVLTTLVTVPNWPFFNRH 62 (92)
Q Consensus 10 e~l~~~il~i~aiis-fi~Gy~~qs--~~~t~~~~~~g~~l~~lvvvP~WP~ynr~ 62 (92)
-.++...+-++++++ .+.+|+.++ +...+.+-.++.++++++.+=-++.|+++
T Consensus 74 F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 74 FNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred HHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 346677888888887 567788844 55555666667788888888888888776
No 47
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=41.60 E-value=1.1e+02 Score=21.15 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 034532 22 VVAFATGYIMGSF 34 (92)
Q Consensus 22 iisfi~Gy~~qs~ 34 (92)
++|+...+++...
T Consensus 39 ~~gl~la~~~g~~ 51 (121)
T PF11990_consen 39 VVGLPLALLTGWW 51 (121)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 48
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=41.30 E-value=82 Score=23.51 Aligned_cols=26 Identities=15% Similarity=0.461 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHheeeCCCcccc
Q 034532 35 QMMILIYAGGVVLTTLVTVPNWPFFN 60 (92)
Q Consensus 35 ~~t~~~~~~g~~l~~lvvvP~WP~yn 60 (92)
...+..+++++.++++++.=+|=+||
T Consensus 222 ~~~~~~~~~s~~lsl~~Ia~aW~~yR 247 (248)
T PF07787_consen 222 GLFLVAFIISFSLSLLTIALAWLFYR 247 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHhheeeC
Confidence 33455567777888888888888876
No 49
>PF11688 DUF3285: Protein of unknown function (DUF3285); InterPro: IPR021702 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=40.75 E-value=50 Score=19.48 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034532 10 EHLMQILLLAFAVVAFATGYI 30 (92)
Q Consensus 10 e~l~~~il~i~aiisfi~Gy~ 30 (92)
..+.+..+...++++|++|..
T Consensus 21 ~SL~HF~LT~~gll~~lv~la 41 (45)
T PF11688_consen 21 TSLFHFGLTAVGLLGFLVGLA 41 (45)
T ss_pred cchhHHHHHHHHHHHHHHHHH
Confidence 457788999999999999854
No 50
>COG4040 Predicted membrane protein [Function unknown]
Probab=40.63 E-value=75 Score=20.96 Aligned_cols=34 Identities=15% Similarity=0.352 Sum_probs=27.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 4 QGQKLAEHLMQILLLAFAVVAFATGYIMGSFQMM 37 (92)
Q Consensus 4 ~GQ~lae~l~~~il~i~aiisfi~Gy~~qs~~~t 37 (92)
-.|.++++++......+++-+++.=|+-.++...
T Consensus 21 lardra~~lLYLn~~sFgisaliAlyv~t~mG~i 54 (85)
T COG4040 21 LARDRAAQLLYLNVVSFGISALIALYVRTDMGLI 54 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhH
Confidence 3588999999999999999998888887776543
No 51
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=40.20 E-value=78 Score=21.78 Aligned_cols=9 Identities=33% Similarity=0.748 Sum_probs=4.3
Q ss_pred HHHHHH-HHH
Q 034532 24 AFATGY-IMG 32 (92)
Q Consensus 24 sfi~Gy-~~q 32 (92)
+|+.|| +.+
T Consensus 92 ~~~~~~~~~~ 101 (142)
T PF11712_consen 92 VFFAGWYWAG 101 (142)
T ss_pred HHHHHHHHHH
Confidence 345555 444
No 52
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=39.38 E-value=63 Score=18.23 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 10 EHLMQILLLAFAVVAFATGYIMGS 33 (92)
Q Consensus 10 e~l~~~il~i~aiisfi~Gy~~qs 33 (92)
=++.-++.+++-+-=|+.|+..+|
T Consensus 4 LK~~Vy~vV~ffv~LFifGflsnD 27 (36)
T PF02532_consen 4 LKIFVYTVVIFFVSLFIFGFLSND 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEeehhhHHHHHHHHhccccCCC
Confidence 355666666776667777776654
No 53
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=39.33 E-value=1.1e+02 Score=20.23 Aligned_cols=45 Identities=13% Similarity=0.234 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhe
Q 034532 7 KLAEHLMQILLLAFAVVAFATGYIMGSF-QMMILIYAGGVVLTTLV 51 (92)
Q Consensus 7 ~lae~l~~~il~i~aiisfi~Gy~~qs~-~~t~~~~~~g~~l~~lv 51 (92)
|+-|-++-.-+.++.++..+.-|+.=++ ..++..+..+.++++.+
T Consensus 35 kL~ELlFF~nIA~FcI~tvlfsFvfLs~kl~t~~Af~~Ai~~Sl~~ 80 (90)
T PF11674_consen 35 KLKELLFFANIAFFCIFTVLFSFVFLSLKLNTFWAFPLAILISLAI 80 (90)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 5678888888899999999999998888 77888888887777654
No 54
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=39.18 E-value=45 Score=22.00 Aligned_cols=17 Identities=35% Similarity=0.266 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034532 15 ILLLAFAVVAFATGYIM 31 (92)
Q Consensus 15 ~il~i~aiisfi~Gy~~ 31 (92)
++..++++++.++||+.
T Consensus 6 iv~~~~~v~~~i~~y~~ 22 (87)
T PF10883_consen 6 IVGGVGAVVALILAYLW 22 (87)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44577888888888864
No 55
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=38.64 E-value=41 Score=22.63 Aligned_cols=19 Identities=11% Similarity=0.008 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034532 18 LAFAVVAFATGYIMGSFQM 36 (92)
Q Consensus 18 ~i~aiisfi~Gy~~qs~~~ 36 (92)
.++.++|++..+++.|...
T Consensus 42 viGilLG~~~~~~~~~~~l 60 (93)
T PF06946_consen 42 VIGILLGAAAYPLTGDGNL 60 (93)
T ss_pred HHHHHHHHHhhhcCCCccH
Confidence 3334444444444444433
No 56
>COG1989 PulO Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=37.60 E-value=1e+02 Score=22.73 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=33.5
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 034532 1 MDWQGQKLAEHLMQILLLAFAVVAFATGY--IMGSFQMMILIYAGGVVLTT 49 (92)
Q Consensus 1 iDf~GQ~lae~l~~~il~i~aiisfi~Gy--~~qs~~~t~~~~~~g~~l~~ 49 (92)
+|+++|.+.+.+..-.+..+-+.+.+..+ ..+.+.-.+..++....+..
T Consensus 115 id~~~~~lp~~l~lp~~~l~ll~~~~~~~~~~~~~i~~a~~~~~~~~~~~~ 165 (254)
T COG1989 115 IDLDTQLLPDLLTLPLLWLGLLFSLIVIFIALLDALLGAVVGYGLLALIYL 165 (254)
T ss_pred HHhhhhhCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999987777777777777777 55555555555555444433
No 57
>PLN02922 prenyltransferase
Probab=37.06 E-value=2e+02 Score=22.50 Aligned_cols=27 Identities=19% Similarity=0.376 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHheeeCCCccccCCCC
Q 034532 37 MILIYAGGVVLTTLVTVPNWPFFNRHPL 64 (92)
Q Consensus 37 t~~~~~~g~~l~~lvvvP~WP~ynr~pl 64 (92)
.+.+.++|++++.+=+.||+| +.++++
T Consensus 125 ~l~iG~~g~~~~~~Yt~gP~p-l~y~gL 151 (315)
T PLN02922 125 VILLLAAAILCGYVYQCPPFR-LSYKGL 151 (315)
T ss_pred HHHHHHHHHHHHHHHhcCCcc-cccCcc
Confidence 445667788888899999999 466665
No 58
>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=36.97 E-value=80 Score=24.97 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=26.7
Q ss_pred cHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 034532 5 GQKLAEHLMQ---ILLLAFAVVAFATGYIMGSFQMM 37 (92)
Q Consensus 5 GQ~lae~l~~---~il~i~aiisfi~Gy~~qs~~~t 37 (92)
+|+..|++.+ ..+++..+.++..|++.|.....
T Consensus 109 a~~~~~~~~~~lp~~~vL~lifa~l~~~~~~~l~~~ 144 (268)
T COG4587 109 AAHLGERASRGLPFLLVLLLIFALLYGAILQFLSPW 144 (268)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhHHhhcCCHH
Confidence 7888999888 46777888889999888877654
No 59
>PF14143 YrhC: YrhC-like protein
Probab=35.72 E-value=1.2e+02 Score=19.37 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034532 6 QKLAEHLMQILLLAFAVVAFAT 27 (92)
Q Consensus 6 Q~lae~l~~~il~i~aiisfi~ 27 (92)
+.++++.-++.+++.++.+|++
T Consensus 4 ~~Ki~DyKrf~~vLLAvs~FlY 25 (72)
T PF14143_consen 4 KEKIEDYKRFAFVLLAVSTFLY 25 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888899999999988875
No 60
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=35.71 E-value=89 Score=17.93 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 034532 16 LLLAFAVVAFATGYIMGSFQMM-ILIYAGGVVL 47 (92)
Q Consensus 16 il~i~aiisfi~Gy~~qs~~~t-~~~~~~g~~l 47 (92)
.+.+..++++.+||..++...+ -...++++++
T Consensus 9 ~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~ll 41 (55)
T PF09527_consen 9 TMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLL 41 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 3455667888999998888777 3333444433
No 61
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=35.38 E-value=1.2e+02 Score=19.16 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 7 KLAEHLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLT 48 (92)
Q Consensus 7 ~lae~l~~~il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l~ 48 (92)
++...++-..-+++-++|++.+=+..-+.......++.++++
T Consensus 11 ~l~~~il~~~~iisfi~Gy~~q~~~~~~~~~~~g~~~~~lv~ 52 (76)
T PF06645_consen 11 KLMQYILIISAIISFIVGYITQSFSYTFYIYGAGVVLTLLVV 52 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhe
Confidence 455556666666666667766666665555555555544443
No 62
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=34.86 E-value=1.2e+02 Score=19.33 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 14 QILLLAFAVVAFATGYIMGSFQMMILIYAGG 44 (92)
Q Consensus 14 ~~il~i~aiisfi~Gy~~qs~~~t~~~~~~g 44 (92)
-.++.+++++|+++|...--+...+..|++-
T Consensus 13 ~~~~l~~~lvG~~~g~~~~~l~~~l~~~l~w 43 (90)
T PF11808_consen 13 LLLLLAAALVGWLFGHLWWALLLGLLLYLFW 43 (90)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3466778889999999988888887777653
No 63
>PF01478 Peptidase_A24: Type IV leader peptidase family; InterPro: IPR000045 This group of aspartic endopeptidases belong to MEROPS peptidase family A24 (type IV prepilin peptidase family, clan AD), subfamily A24A. Bacteria produce a number of protein precursors that undergo post-translational methylation and proteolysis prior to secretion as active proteins. Type IV prepilin leader peptidases are enzymes that mediate this type of post-translational modification. Type IV pilin is a protein found on the surface of Pseudomonas aeruginosa, Neisseria gonorrhoeae and other Gram-negative pathogens. Pilin subunits attach the infecting organism to the surface of host epithelial cells. They are synthesised as prepilin subunits, which differ from mature pilin by virtue of containing a 6-8 residue leader peptide consisting of charged amino acids. Mature type IV pilins also contain a methylated N-terminal phenylalanine residue. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue []. This entry represents the peptidase domain from the prepilin type IV endopeptidases []. It can be found on its own, or in the case of the bifunctional enzymes, next to a methylation domain.; GO: 0004190 aspartic-type endopeptidase activity, 0016020 membrane; PDB: 3S0X_B.
Probab=34.76 E-value=1.1e+02 Score=18.86 Aligned_cols=49 Identities=16% Similarity=0.149 Sum_probs=21.4
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034532 1 MDWQGQKLAEHLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTL 50 (92)
Q Consensus 1 iDf~GQ~lae~l~~~il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l~~l 50 (92)
+|++-++.-+++....+.++.+.. .......++...+.....+.++..+
T Consensus 13 ~D~~~~~Ip~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (106)
T PF01478_consen 13 IDIKTRRIPNRLLIPLLILGLIYS-LFSGFLISLLEALLGALIGFLIFLL 61 (106)
T ss_dssp TTHHHHSTHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhHCeEChHHHHHHHHHHHHHH-HHccccccHHHHHHHHHHHHHHHHh
Confidence 466666665554444333333332 1122444444444444444444333
No 64
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=33.99 E-value=1.5e+02 Score=26.19 Aligned_cols=46 Identities=17% Similarity=0.209 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhe
Q 034532 6 QKLAEHLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTLV 51 (92)
Q Consensus 6 Q~lae~l~~~il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l~~lv 51 (92)
++..=.+..+++++++++..++-++.++....+..++.++.+++++
T Consensus 6 ~~~~l~~~~~~lI~~~iiliiv~f~~~~~l~~i~~l~~~~~~i~~l 51 (655)
T COG3887 6 HKRLLSYIFLGLIAFSIILIIVSFSFNWWLSAIAVLLLVVFLIFLL 51 (655)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3444556677888888888888888888888887777777666543
No 65
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=33.84 E-value=1.1e+02 Score=21.61 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=14.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 5 GQKLAEHLMQILLLAFAVVAFATG 28 (92)
Q Consensus 5 GQ~lae~l~~~il~i~aiisfi~G 28 (92)
=|+..+++..+++.+..++++++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~ 169 (230)
T PF00122_consen 146 LERKLNKIAKILIIIILAIAILVF 169 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhcccccchhhh
Confidence 366777777776655444444433
No 66
>PRK01345 heat shock protein HtpX; Provisional
Probab=33.74 E-value=1.8e+02 Score=22.77 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 15 ILLLAFAVVAFATGYIMGSFQMMILIYAGGVV 46 (92)
Q Consensus 15 ~il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~ 46 (92)
+++.+..++.+++||+......++...++++.
T Consensus 8 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~ 39 (317)
T PRK01345 8 MLLAGMTALFMGVGYLIGGAGGMMIALVIAAG 39 (317)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 34555555566677777665544444444433
No 67
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=33.69 E-value=47 Score=20.39 Aligned_cols=14 Identities=14% Similarity=0.026 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHH
Q 034532 17 LLAFAVVAFATGYI 30 (92)
Q Consensus 17 l~i~aiisfi~Gy~ 30 (92)
+++++++++++|++
T Consensus 56 ~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 56 TIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHH
Confidence 55666777666654
No 68
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=33.29 E-value=62 Score=24.58 Aligned_cols=13 Identities=8% Similarity=0.243 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 034532 7 KLAEHLMQILLLA 19 (92)
Q Consensus 7 ~lae~l~~~il~i 19 (92)
|++.++++++|.+
T Consensus 10 RK~N~iLNiaI~I 22 (217)
T PF07423_consen 10 RKTNKILNIAIGI 22 (217)
T ss_pred hhhhhhHHHHHHH
Confidence 4455555554443
No 69
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=33.02 E-value=45 Score=24.32 Aligned_cols=19 Identities=26% Similarity=0.481 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034532 17 LLAFAVVAFATGYIMGSFQ 35 (92)
Q Consensus 17 l~i~aiisfi~Gy~~qs~~ 35 (92)
+++.+++++++|++..-+.
T Consensus 2 ~ii~~i~~~~vG~~~G~~~ 20 (201)
T PF12072_consen 2 IIIIAIVALIVGIGIGYLV 20 (201)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5778888888888877444
No 70
>PLN02878 homogentisate phytyltransferase
Probab=32.99 E-value=2.3e+02 Score=22.32 Aligned_cols=46 Identities=24% Similarity=0.147 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034532 5 GQKLAEHLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTL 50 (92)
Q Consensus 5 GQ~lae~l~~~il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l~~l 50 (92)
|++++-++...++.+.-..+.++|......-....+.++-.+++.+
T Consensus 197 G~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~ 242 (280)
T PLN02878 197 GQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASI 242 (280)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 7889999888888888888888998877665655555555554443
No 71
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=32.71 E-value=1.4e+02 Score=23.06 Aligned_cols=48 Identities=8% Similarity=0.217 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHheeeCCCccccC
Q 034532 14 QILLLAFAVVAFATGYIMGSF-----QMMILIYAGGVVLTTLVTVPNWPFFNR 61 (92)
Q Consensus 14 ~~il~i~aiisfi~Gy~~qs~-----~~t~~~~~~g~~l~~lvvvP~WP~ynr 61 (92)
.....+..++|+++|++.... ..++.+.++|++++.+=..||+|.=++
T Consensus 102 ~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~gP~~lk~~ 154 (306)
T TIGR02056 102 ITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQN 154 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCChhhhhhc
Confidence 334455556777777665422 234555666677777777788765443
No 72
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=32.64 E-value=2.3e+02 Score=21.79 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHheeeCCCcc
Q 034532 36 MMILIYAGGVVLTTLVTVPNWPF 58 (92)
Q Consensus 36 ~t~~~~~~g~~l~~lvvvP~WP~ 58 (92)
..+.+.++|++++..=+.||+|.
T Consensus 110 ~~l~lg~~~~~~~~~Yt~gP~~l 132 (284)
T TIGR00751 110 WFIALGALCIAAAITYTVGSKPY 132 (284)
T ss_pred HHHHHHHHHHHHhHhhcCCCCcc
Confidence 45566777777888888999884
No 73
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=32.60 E-value=32 Score=27.80 Aligned_cols=17 Identities=12% Similarity=0.364 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034532 15 ILLLAFAVVAFATGYIM 31 (92)
Q Consensus 15 ~il~i~aiisfi~Gy~~ 31 (92)
++++++++|||+..|+.
T Consensus 376 vvvvVgglvGfLcWwf~ 392 (397)
T PF03302_consen 376 VVVVVGGLVGFLCWWFI 392 (397)
T ss_pred hHHHHHHHHHHHhhhee
Confidence 57888899999988863
No 74
>PRK11146 outer membrane-specific lipoprotein transporter subunit LolE; Provisional
Probab=32.17 E-value=44 Score=26.12 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=12.8
Q ss_pred HHHHHHHHHh-eeeCCCccccCCCCC
Q 034532 41 YAGGVVLTTL-VTVPNWPFFNRHPLK 65 (92)
Q Consensus 41 ~~~g~~l~~l-vvvP~WP~ynr~pl~ 65 (92)
++.+++++++ -..|.|-.-|.+|.+
T Consensus 382 ~~~~~~~~~la~~~Pa~~a~r~~p~~ 407 (412)
T PRK11146 382 LVTALVLSLLASWYPARRASKLDPAR 407 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 3344444333 334777666666654
No 75
>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.06 E-value=1.2e+02 Score=22.72 Aligned_cols=35 Identities=9% Similarity=0.338 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034532 16 LLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTL 50 (92)
Q Consensus 16 il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l~~l 50 (92)
.+++...++..++|+++.....+...++|++++++
T Consensus 125 ~l~~L~~~ti~~lflt~~~~~l~~~l~~g~~vv~~ 159 (187)
T KOG3142|consen 125 VLIGLVLITIPVLFLTSAGSNLLWALGAGLVVVLI 159 (187)
T ss_pred hhhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHh
Confidence 34455667778889999999999988888887764
No 76
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=31.98 E-value=42 Score=21.06 Aligned_cols=16 Identities=13% Similarity=0.434 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 034532 17 LLAFAVVAFATGYIMG 32 (92)
Q Consensus 17 l~i~aiisfi~Gy~~q 32 (92)
++++.++|++.||+..
T Consensus 3 iilali~G~~~Gff~a 18 (64)
T PF03672_consen 3 IILALIVGAVIGFFIA 18 (64)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455556666666553
No 77
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=31.67 E-value=1.6e+02 Score=22.06 Aligned_cols=52 Identities=15% Similarity=0.339 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCCccccC
Q 034532 9 AEHLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTLVTVPNWPFFNR 61 (92)
Q Consensus 9 ae~l~~~il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l~~lvvvP~WP~ynr 61 (92)
.++-......+..++++++|++...... ....+++.++..+=..||.|+=++
T Consensus 81 s~~~a~~~~~~~~~~~~~l~~~l~~~~~-~~l~~~~~~~~~~Ys~~p~~lk~~ 132 (283)
T TIGR01476 81 SLREVRWNWLVLTVAGLLVALVLGNWLI-VLFTVVGIVLAVIYSMPPIKLKRN 132 (283)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhheecCchhhhccC
Confidence 3444555566677778888887754322 334444555566666676664333
No 78
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=31.39 E-value=59 Score=23.31 Aligned_cols=57 Identities=18% Similarity=0.128 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH----HH-------HHHHH-HHHHHHHHHHHHHHHheeeCCCccccCC
Q 034532 5 GQKLAEHLMQILLLAFAVVAFAT----GY-------IMGSF-QMMILIYAGGVVLTTLVTVPNWPFFNRH 62 (92)
Q Consensus 5 GQ~lae~l~~~il~i~aiisfi~----Gy-------~~qs~-~~t~~~~~~g~~l~~lvvvP~WP~ynr~ 62 (92)
-|+.--++.-+++.+.+=+||++ |. +.++. .+|+..|+.-.++ -.+++=-|--||+-
T Consensus 9 ~qr~~~rliD~~~T~laW~gf~~~~~~~l~~~l~~p~~~~~~l~tl~~Y~~iAv~-nAvvLI~WA~YNq~ 77 (137)
T PRK14585 9 RQSPVRLLVDYVATTILWTLFALFIFLFAMDLLTGYYWQSEARSRLQFYFLLAVA-NAVVLIVWALYNKL 77 (137)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 35555566666666555555544 32 23332 3444445443333 33445569988853
No 79
>PF15169 DUF4564: Domain of unknown function (DUF4564)
Probab=31.32 E-value=21 Score=26.79 Aligned_cols=47 Identities=23% Similarity=0.574 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCCc--cccCC
Q 034532 16 LLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTLVTVPNWP--FFNRH 62 (92)
Q Consensus 16 il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l~~lvvvP~WP--~ynr~ 62 (92)
++...+.||+..-|+.+|=-.--+.|++||++..+..+-+|- .|||+
T Consensus 26 l~~gi~siGl~~~yys~d~~~wK~fyv~~c~fva~~n~edwee~iFdK~ 74 (187)
T PF15169_consen 26 LLVGIASIGLAAAYYSSDSLLWKLFYVAGCLFVALQNMEDWEEAIFDKS 74 (187)
T ss_pred hHHHHHhcccceeeecCCchHHHHHHHHHHHHHHHhcchhhhheeEecc
Confidence 455566677777777777666688999999999999999997 56653
No 80
>PF04688 Phage_holin: Phage lysis protein, holin; InterPro: IPR006479 This entry represents the Bacteriophage SP-beta, BhlB, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=31.11 E-value=92 Score=18.13 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 10 EHLMQILLLAFAVVAFATGYIMGSF 34 (92)
Q Consensus 10 e~l~~~il~i~aiisfi~Gy~~qs~ 34 (92)
|.+.+.+..++.+++.+++|+..+.
T Consensus 10 ~~i~~~~s~v~t~~~~l~awwKNN~ 34 (47)
T PF04688_consen 10 EQINQLISAVFTIVTALYAWWKNNY 34 (47)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 5666777778888888888876543
No 81
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=30.54 E-value=31 Score=27.23 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 6 QKLAEHLMQILLLAFAVVAFATGYIMGSFQ 35 (92)
Q Consensus 6 Q~lae~l~~~il~i~aiisfi~Gy~~qs~~ 35 (92)
|...-++++++-+++....++.|++--+|.
T Consensus 252 ~N~~mk~lTv~s~if~pptliagiyGMNf~ 281 (316)
T PRK11085 252 QNRIIKIFSVVSVVFLPPTLVASSYGMNFE 281 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence 445556677777888888999999988887
No 82
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=30.50 E-value=1.8e+02 Score=19.91 Aligned_cols=16 Identities=6% Similarity=0.021 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 034532 15 ILLLAFAVVAFATGYI 30 (92)
Q Consensus 15 ~il~i~aiisfi~Gy~ 30 (92)
++..++++.++++|..
T Consensus 25 ~~~~~~~~~gl~~g~~ 40 (111)
T TIGR03750 25 VAAGVGLAAGLVLGLL 40 (111)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444555555543
No 83
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=30.49 E-value=2.2e+02 Score=21.56 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhe
Q 034532 16 LLLAFAVVAFATGYIMGSFQMM--ILIYAGGVVLTTLV 51 (92)
Q Consensus 16 il~i~aiisfi~Gy~~qs~~~t--~~~~~~g~~l~~lv 51 (92)
++..+.+.++..||+....... .....+|++..++|
T Consensus 22 vl~ta~la~~s~~~a~~~~~~~~~~~ai~~glvwgl~I 59 (301)
T PF14362_consen 22 VLFTALLAGLSGGYALYTVFGGPVWAAIPFGLVWGLVI 59 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 3444444455555665555543 45555555555543
No 84
>PRK13658 hypothetical protein; Provisional
Probab=30.45 E-value=55 Score=20.24 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=14.4
Q ss_pred CCccHHHHHHHHHHHHHH
Q 034532 2 DWQGQKLAEHLMQILLLA 19 (92)
Q Consensus 2 Df~GQ~lae~l~~~il~i 19 (92)
|...|++|||+=+++=++
T Consensus 3 ~idaq~~A~RIDTVLDIL 20 (59)
T PRK13658 3 EFDAQRVAERIDTVLDIL 20 (59)
T ss_pred cccHHHHHHHHhHHHHHH
Confidence 678899999998876443
No 85
>PLN02351 cytochromes b561 family protein
Probab=30.17 E-value=88 Score=24.27 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=12.9
Q ss_pred HHHHHHHHHHheeeCCCccccCCCCC
Q 034532 40 IYAGGVVLTTLVTVPNWPFFNRHPLK 65 (92)
Q Consensus 40 ~~~~g~~l~~lvvvP~WP~ynr~pl~ 65 (92)
+.+.|.++..+++- |.|+|+|.|
T Consensus 208 iv~fG~~Vv~~~~~---p~~kr~~~~ 230 (242)
T PLN02351 208 LALLSGIVILAAVL---PKYQSHSSK 230 (242)
T ss_pred HHHHHHHHHHhhcC---ccccCCCcc
Confidence 33444444455555 566777776
No 86
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=29.59 E-value=1.2e+02 Score=21.12 Aligned_cols=29 Identities=21% Similarity=0.496 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 15 ILLLAFAVVAFATGYIMGSFQMMILIYAGGVV 46 (92)
Q Consensus 15 ~il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~ 46 (92)
.++.++|+++.++|+..|+...- +.+|++
T Consensus 26 ~l~~~~g~~~~~i~f~~~~~~~n---~~~gi~ 54 (206)
T PF00924_consen 26 SLLASLGVLGLAIGFAFQDIISN---FISGII 54 (206)
T ss_dssp CHHHHHHHHHHHHHHHHCHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 35677788888888888876655 344544
No 87
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=29.56 E-value=1.4e+02 Score=24.88 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=15.0
Q ss_pred cHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 034532 5 GQKLAEHLMQILL---LAFAVVAFATGYI 30 (92)
Q Consensus 5 GQ~lae~l~~~il---~i~aiisfi~Gy~ 30 (92)
-|+.++++.++.. .+.+++.|++.++
T Consensus 162 ~~~~~~~~a~~~~~~~l~~a~~~~~~~~~ 190 (556)
T TIGR01525 162 IQRLADRIASYYVPAVLAIALLTFVVWLA 190 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777777766543 3445555555544
No 88
>PRK00106 hypothetical protein; Provisional
Probab=29.18 E-value=73 Score=27.25 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 14 QILLLAFAVVAFATGYIMGSFQMM 37 (92)
Q Consensus 14 ~~il~i~aiisfi~Gy~~qs~~~t 37 (92)
-+++++++++|+++||+.-|+..-
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~ 27 (535)
T PRK00106 4 IIILVVSALIGLVIGYVLISIKMK 27 (535)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999887654
No 89
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=28.20 E-value=1.9e+02 Score=22.67 Aligned_cols=53 Identities=11% Similarity=0.038 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-HHHHHHHheeeCCCccc
Q 034532 7 KLAEHLMQILLLAFAVVAFATG--YIMGSFQMMILIYA-GGVVLTTLVTVPNWPFF 59 (92)
Q Consensus 7 ~lae~l~~~il~i~aiisfi~G--y~~qs~~~t~~~~~-~g~~l~~lvvvP~WP~y 59 (92)
++.-.+++.+-.+.+++.+.++ -..++|..++..-+ .|+..++++.-|=|=.+
T Consensus 226 ~lrr~l~TslTt~l~llpL~l~G~~~~~~fA~~li~Gli~gt~sslfva~pl~~~~ 281 (297)
T PRK13021 226 TFSRTMVTSGTTLMTVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPELL 281 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444455544443 55566666554443 55566666777766544
No 90
>PF13273 DUF4064: Protein of unknown function (DUF4064)
Probab=28.04 E-value=1.6e+02 Score=18.63 Aligned_cols=18 Identities=11% Similarity=0.170 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034532 7 KLAEHLMQILLLAFAVVA 24 (92)
Q Consensus 7 ~lae~l~~~il~i~aiis 24 (92)
|.+|+++-.+=.+.+++.
T Consensus 2 R~~E~iL~~Ig~il~il~ 19 (100)
T PF13273_consen 2 RTAEKILGWIGGILGILF 19 (100)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 678888877655555443
No 91
>KOG4671 consensus Brain cell membrane protein 1 (BCMP1) [General function prediction only]
Probab=28.02 E-value=38 Score=25.66 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=25.1
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 2 DWQGQKLAEHLMQILLLAFAVVAFATGYIMGSFQM 36 (92)
Q Consensus 2 Df~GQ~lae~l~~~il~i~aiisfi~Gy~~qs~~~ 36 (92)
|+.||+-+..+.-.. .+..+|.|++|++.++...
T Consensus 76 ~~~~~~aaAAmL~~g-~~i~~I~filgl~~~cv~~ 109 (201)
T KOG4671|consen 76 EVDGGRAAAAMLFIG-AAILVICFILGLFALCVPL 109 (201)
T ss_pred hcchHHHHHHHHHHH-HHHHHHHHHHHHHHhcCcc
Confidence 567787776665444 6667889999999998643
No 92
>COG2035 Predicted membrane protein [Function unknown]
Probab=27.97 E-value=80 Score=25.02 Aligned_cols=53 Identities=17% Similarity=0.322 Sum_probs=30.3
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHheeeCC
Q 034532 1 MDWQGQKLAEHLMQILLLAFAVVAFATGYIMGSFQ------MMILIYAGGVVLTTLVTVPN 55 (92)
Q Consensus 1 iDf~GQ~lae~l~~~il~i~aiisfi~Gy~~qs~~------~t~~~~~~g~~l~~lvvvP~ 55 (92)
+|++.++...++.- +..+.++++...|...+.. +.+..+.+|.+.++-.++|-
T Consensus 106 i~~~s~~~~~~l~~--li~gfii~~~~~~~~~~~~~~~~~~~~i~~~~aGavAa~AMilPG 164 (276)
T COG2035 106 INYKSVKTVNRLFA--LILGFIILGLILYLNNIQTASITTGYLILLFIAGAVAACAMILPG 164 (276)
T ss_pred HhhhccchHhHHHH--HHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHhCCC
Confidence 46777775444443 3344455555555544333 33556677777777777773
No 93
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=27.74 E-value=1.7e+02 Score=18.68 Aligned_cols=35 Identities=14% Similarity=0.004 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 11 HLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVV 46 (92)
Q Consensus 11 ~l~~~il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~ 46 (92)
..+.++-.+++++.+++|+..+|.-.. ...+.|.+
T Consensus 30 ~~FW~lSl~Gs~lll~Y~i~r~DpV~i-lgq~~gl~ 64 (72)
T PF07578_consen 30 VAFWYLSLIGSLLLLIYAIIRKDPVFI-LGQSFGLF 64 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHH-HHHhcChH
Confidence 356678889999999999999998443 44444444
No 94
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=27.73 E-value=1.7e+02 Score=19.77 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034532 32 GSFQMMILIYAGGVVLT 48 (92)
Q Consensus 32 qs~~~t~~~~~~g~~l~ 48 (92)
..+...+++.+.|.+++
T Consensus 97 ~gi~~Al~tT~~GL~va 113 (139)
T PF01618_consen 97 GGISVALITTAYGLVVA 113 (139)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555555555544
No 95
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=27.72 E-value=64 Score=27.44 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=15.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 5 GQKLAEHLMQILLLAFAVVAFATGYIM 31 (92)
Q Consensus 5 GQ~lae~l~~~il~i~aiisfi~Gy~~ 31 (92)
.|=+.|.++ +-.++|++|.++|+..
T Consensus 570 ~qFL~Es~~--l~~~GGiiGi~lg~~~ 594 (648)
T PRK10535 570 QQFLIEAVL--VCLVGGALGITLSLLI 594 (648)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 355566554 3456677777777654
No 96
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=27.64 E-value=1.6e+02 Score=18.42 Aligned_cols=39 Identities=10% Similarity=0.118 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 11 HLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTT 49 (92)
Q Consensus 11 ~l~~~il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l~~ 49 (92)
+++-+++-+.|.+...++-+..+......+.+..+++..
T Consensus 12 ~~~DIi~Fila~i~i~it~F~~n~~~g~i~i~I~l~l~G 50 (63)
T PF06341_consen 12 KYFDIILFILAMIFINITAFLINQIAGLISIGITLFLAG 50 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777666666555554444444444433
No 97
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=27.62 E-value=76 Score=19.79 Aligned_cols=27 Identities=22% Similarity=0.499 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 10 EHLMQILLLAFAVVAFATGYIMGSFQMM 37 (92)
Q Consensus 10 e~l~~~il~i~aiisfi~Gy~~qs~~~t 37 (92)
+++.|+ +++.++|.|-.||+.-...--
T Consensus 4 ~DiiQi-i~l~AlI~~pLGyl~~~~~~r 30 (62)
T PF11120_consen 4 SDIIQI-IILCALIFFPLGYLARRWLPR 30 (62)
T ss_pred HHHHHH-HHHHHHHHHhHHHHHHHHhHH
Confidence 445554 467789999999987654443
No 98
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=27.56 E-value=1.2e+02 Score=22.81 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 034532 18 LAFAVVAFATGYIMGS 33 (92)
Q Consensus 18 ~i~aiisfi~Gy~~qs 33 (92)
+.++++++++++....
T Consensus 7 ~~~~~~s~~~~l~~~~ 22 (284)
T PF12805_consen 7 LCFALASLLVGLLFPY 22 (284)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3344445554444433
No 99
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.53 E-value=1.3e+02 Score=17.48 Aligned_cols=7 Identities=29% Similarity=0.169 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 034532 43 GGVVLTT 49 (92)
Q Consensus 43 ~g~~l~~ 49 (92)
+|++++.
T Consensus 30 ~G~llg~ 36 (68)
T PF06305_consen 30 LGALLGW 36 (68)
T ss_pred HHHHHHH
Confidence 3333333
No 100
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=27.53 E-value=33 Score=17.56 Aligned_cols=17 Identities=12% Similarity=0.372 Sum_probs=12.0
Q ss_pred CCccHHHHHHHHHHHHH
Q 034532 2 DWQGQKLAEHLMQILLL 18 (92)
Q Consensus 2 Df~GQ~lae~l~~~il~ 18 (92)
||+||.++.+++..++-
T Consensus 36 ~~~~~g~~~~~~~~~~~ 52 (65)
T cd04301 36 EYRGKGIGSALLEAAEE 52 (65)
T ss_pred HHcCcCHHHHHHHHHHH
Confidence 57788888777776543
No 101
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=27.40 E-value=2e+02 Score=19.35 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHh
Q 034532 16 LLLAFAVVAFATGYIMGSFQ-----MMILIYAGGVVLTTL 50 (92)
Q Consensus 16 il~i~aiisfi~Gy~~qs~~-----~t~~~~~~g~~l~~l 50 (92)
.+++..+++...|...+.-. .|+...++|+++.+.
T Consensus 51 ~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~ 90 (100)
T TIGR02230 51 SVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCL 90 (100)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH
Confidence 45566777888887776643 466666666666654
No 102
>PRK10404 hypothetical protein; Provisional
Probab=27.05 E-value=73 Score=21.25 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 034532 16 LLLAFAVVAFATGYIM 31 (92)
Q Consensus 16 il~i~aiisfi~Gy~~ 31 (92)
.+.+.+.+||++|++.
T Consensus 83 avGiaagvGlllG~Ll 98 (101)
T PRK10404 83 GIGVGAAVGLVLGLLL 98 (101)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6778888999999874
No 103
>TIGR02212 lolCE lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC.
Probab=26.61 E-value=73 Score=24.47 Aligned_cols=13 Identities=23% Similarity=0.508 Sum_probs=7.4
Q ss_pred eeCCCccccCCCC
Q 034532 52 TVPNWPFFNRHPL 64 (92)
Q Consensus 52 vvP~WP~ynr~pl 64 (92)
..|.|..-+.+|+
T Consensus 393 ~~Pa~~a~~~~pv 405 (411)
T TIGR02212 393 LYPAWRAAKLQPA 405 (411)
T ss_pred HHHHHHHhCCCHH
Confidence 3466666555554
No 104
>COG4327 Predicted membrane protein [Function unknown]
Probab=26.61 E-value=97 Score=21.12 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 11 HLMQILLLAFAVVAFATGYIMGSFQ 35 (92)
Q Consensus 11 ~l~~~il~i~aiisfi~Gy~~qs~~ 35 (92)
.++..+|.+..++||.+-.+.++++
T Consensus 19 tli~~lL~vwflVSfvvi~fa~als 43 (101)
T COG4327 19 TLIAALLGVWFLVSFVVILFARALS 43 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4667788999999999988888887
No 105
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=26.56 E-value=1.4e+02 Score=18.18 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034532 18 LAFAVVAFATGYIMGSFQM 36 (92)
Q Consensus 18 ~i~aiisfi~Gy~~qs~~~ 36 (92)
.++.++|++.|+....+..
T Consensus 56 ~~~~~~g~~~~~~~~~~~~ 74 (121)
T PF02687_consen 56 LIGILIGILLGILLIIFLI 74 (121)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455566666666555544
No 106
>PF12676 DUF3796: Protein of unknown function (DUF3796); InterPro: IPR024257 This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.
Probab=26.53 E-value=2.2e+02 Score=19.49 Aligned_cols=45 Identities=13% Similarity=0.301 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheee
Q 034532 8 LAEHLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTLVTV 53 (92)
Q Consensus 8 lae~l~~~il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l~~lvvv 53 (92)
-+-+...+.+.+..++.++. .+..+.........++.++++++-.
T Consensus 58 Aa~~af~v~l~~~~ii~l~~-~i~~~~~~~~~~i~i~~~i~l~vf~ 102 (118)
T PF12676_consen 58 AASRAFFVALILLFIILLIS-MIFDNLELITILIAIAFAIALLVFA 102 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777777 5555555544444555555554443
No 107
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=26.52 E-value=51 Score=21.03 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=17.3
Q ss_pred CccccCCCCCccCCCCCccCCcchhh
Q 034532 56 WPFFNRHPLKWLDPSEAEKHPKPQLA 81 (92)
Q Consensus 56 WP~ynr~pl~W~~p~~~~~~~~~~~~ 81 (92)
|..|||....=.+++++++.++....
T Consensus 20 Y~iYnr~~~~q~~~~~~e~y~~~~~~ 45 (68)
T PF05961_consen 20 YGIYNRKKTTQNTNPSTENYEKMENL 45 (68)
T ss_pred HHHHhcccccCCCCCchhhcCCcccc
Confidence 67899988877666665555444433
No 108
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=26.44 E-value=19 Score=26.21 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 9 AEHLMQILLLAFAVVAFATGYIMGSFQMM 37 (92)
Q Consensus 9 ae~l~~~il~i~aiisfi~Gy~~qs~~~t 37 (92)
.-+.++++-+++.-++|+.|++--++..+
T Consensus 233 ~m~~LT~~t~iflPlt~i~g~fGMN~~~~ 261 (292)
T PF01544_consen 233 VMKVLTIVTAIFLPLTFITGIFGMNFKGM 261 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTS-SS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCccCC
Confidence 33444555555655588888888777733
No 109
>PRK01844 hypothetical protein; Provisional
Probab=26.17 E-value=1.1e+02 Score=19.68 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034532 16 LLLAFAVVAFATGYIMG 32 (92)
Q Consensus 16 il~i~aiisfi~Gy~~q 32 (92)
+.+++.++|++.||+..
T Consensus 9 l~I~~li~G~~~Gff~a 25 (72)
T PRK01844 9 VGVVALVAGVALGFFIA 25 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445555556665543
No 110
>PRK09546 zntB zinc transporter; Reviewed
Probab=26.07 E-value=32 Score=26.46 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 12 LMQILLLAFAVVAFATGYIMGSFQ 35 (92)
Q Consensus 12 l~~~il~i~aiisfi~Gy~~qs~~ 35 (92)
++.++-+++....|+.|++=-+|.
T Consensus 266 ~Ltilt~IflPlT~IaGiyGMNf~ 289 (324)
T PRK09546 266 TMSLMAMVFLPTTFLTGLFGVNLG 289 (324)
T ss_pred HHHHHHHHHHHHHHHHhhhccccC
Confidence 455566666677899999888876
No 111
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=25.91 E-value=81 Score=20.00 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 034532 16 LLLAFAVVAFATGYIM 31 (92)
Q Consensus 16 il~i~aiisfi~Gy~~ 31 (92)
.+.+.+.+||++|++.
T Consensus 76 svgiAagvG~llG~Ll 91 (94)
T PF05957_consen 76 SVGIAAGVGFLLGLLL 91 (94)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666788888765
No 112
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=25.76 E-value=2.1e+02 Score=21.21 Aligned_cols=15 Identities=20% Similarity=0.142 Sum_probs=6.4
Q ss_pred HHHHHHHHHheeeCC
Q 034532 41 YAGGVVLTTLVTVPN 55 (92)
Q Consensus 41 ~~~g~~l~~lvvvP~ 55 (92)
.+.+.++..+=..|+
T Consensus 110 ~~~~~~~~~~Ys~~~ 124 (285)
T PRK12872 110 FIIPLILGILYSVFF 124 (285)
T ss_pred HHHHHHHHHHHhChh
Confidence 333444444444444
No 113
>PRK10132 hypothetical protein; Provisional
Probab=25.74 E-value=79 Score=21.40 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 034532 16 LLLAFAVVAFATGYIM 31 (92)
Q Consensus 16 il~i~aiisfi~Gy~~ 31 (92)
.+.+.+.+||++|++.
T Consensus 89 svgiaagvG~llG~Ll 104 (108)
T PRK10132 89 SVGTAAAVGIFIGALL 104 (108)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677888899999874
No 114
>PF06703 SPC25: Microsomal signal peptidase 25 kDa subunit (SPC25); InterPro: IPR009582 This family consists of several microsomal signal peptidase 25 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains [].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=25.55 E-value=1.3e+02 Score=20.93 Aligned_cols=43 Identities=21% Similarity=0.221 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHheeeCCC
Q 034532 14 QILLLAFAVVAFATGY---IMGSFQMMILIYAGGVVLTTLVTVPNW 56 (92)
Q Consensus 14 ~~il~i~aiisfi~Gy---~~qs~~~t~~~~~~g~~l~~lvvvP~W 56 (92)
-++.++.|.+++.+.| +-++-.++..+.++=++++.++.+-.|
T Consensus 33 g~~a~~iA~~a~~~d~~~~f~~s~~~~~~~v~~YfiLs~il~~~~~ 78 (162)
T PF06703_consen 33 GYLAVIIAGFAFFYDYKYPFPESKPYLIICVILYFILSGILTLYSY 78 (162)
T ss_pred HHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666777766 457777777777777777777777655
No 115
>PF14043 WVELL: WVELL protein
Probab=25.33 E-value=54 Score=21.27 Aligned_cols=14 Identities=21% Similarity=0.648 Sum_probs=12.0
Q ss_pred CCccHHHHHHHHHH
Q 034532 2 DWQGQKLAEHLMQI 15 (92)
Q Consensus 2 Df~GQ~lae~l~~~ 15 (92)
||+||..+|++.+-
T Consensus 44 ~Y~G~e~te~iV~q 57 (75)
T PF14043_consen 44 PYQGEEMTERIVRQ 57 (75)
T ss_pred ccCcHHHHHHHHHH
Confidence 79999999998754
No 116
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=25.27 E-value=2e+02 Score=24.12 Aligned_cols=20 Identities=20% Similarity=0.384 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034532 6 QKLAEHLMQILLLAFAVVAF 25 (92)
Q Consensus 6 Q~lae~l~~~il~i~aiisf 25 (92)
|++++++.++...+..+++.
T Consensus 199 ~~~~d~~a~~~~~~v~~~a~ 218 (562)
T TIGR01511 199 QRLADKVAGYFVPVVIAIAL 218 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78888887776544444433
No 117
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.03 E-value=67 Score=25.17 Aligned_cols=26 Identities=35% Similarity=0.360 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 6 QKLAEHLMQILLLAFAVVAFATGYIM 31 (92)
Q Consensus 6 Q~lae~l~~~il~i~aiisfi~Gy~~ 31 (92)
|+.+.+..-+++++++++++++|.+.
T Consensus 238 q~~~~k~~~~ll~v~~~v~lii~l~i 263 (269)
T KOG0811|consen 238 QRKARKKKCILLLVGGPVGLIIGLII 263 (269)
T ss_pred HHHhcCchhhhhHHHHHHHHHHHHHH
Confidence 56666667777888888888877643
No 118
>PF08947 BPS: BPS (Between PH and SH2) ; InterPro: IPR015042 The BPS (Between PH and SH2) domain, comprised of 2 beta strands and a C-terminal helix, is an approximately 45 residue region found in the adaptor proteins Grb7/10/14 that mediates inhibition of the tyrosine kinase domain of the insulin receptor by binding of the N-terminal portion of the BPS domain to the substrate peptide groove of the kinase, acting as a pseudosubstrate inhibitor []. ; PDB: 2AUH_B.
Probab=24.91 E-value=15 Score=22.07 Aligned_cols=7 Identities=57% Similarity=1.056 Sum_probs=4.1
Q ss_pred CCCccHH
Q 034532 1 MDWQGQK 7 (92)
Q Consensus 1 iDf~GQ~ 7 (92)
|||.||.
T Consensus 11 MDFsG~~ 17 (49)
T PF08947_consen 11 MDFSGQT 17 (49)
T ss_dssp EE-SSSS
T ss_pred eeecCCc
Confidence 6787764
No 119
>TIGR03647 Na_symport_sm probable solute:sodium symporter small subunit. Members of this family are highly hydrophobic bacterial proteins of about 90 amino acids in length. Members usually are found immediately upstream (sometimes fused to) a member of the solute:sodium symporter family, and therefore are a putative sodium:solute symporter small subunit. Members tend to be found in aquatic species, especially those from marine or other high salt environments.
Probab=24.72 E-value=2e+02 Score=18.40 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 10 EHLMQILLLAFAVVAFATGYIMGSFQ 35 (92)
Q Consensus 10 e~l~~~il~i~aiisfi~Gy~~qs~~ 35 (92)
-++...++++..+++|.+|++..+..
T Consensus 7 ~~li~~lL~iWf~vsfg~~~lf~~~L 32 (77)
T TIGR03647 7 LRLIAVLLAIWFVVSFGAGILFADEL 32 (77)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 46778889999999999998554443
No 120
>PF08138 Sex_peptide: Sex peptide (SP) family; InterPro: IPR012608 This family consists of Sex Peptides (SP) that are found in Drosophila. On mating, Drosophila females decreases her remating rate and increases her egg-laying rate due, in part, to the transfer of SP from the male to the female. SP are found in seminal fluids transferred from the male to the female during mating. The male seminal fluid proteins are referred to as accessory gland proteins (Acps). The SP is one of the most interesting Acps and plays an important role in reproduction [].; GO: 0005179 hormone activity, 0046008 regulation of female receptivity, post-mating, 0005576 extracellular region; PDB: 2LAQ_A.
Probab=24.61 E-value=51 Score=20.27 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=5.0
Q ss_pred HHHheeeCCCccccCCCCCccCC
Q 034532 47 LTTLVTVPNWPFFNRHPLKWLDP 69 (92)
Q Consensus 47 l~~lvvvP~WP~ynr~pl~W~~p 69 (92)
+..+++-=+||+-+|++-.|.+.
T Consensus 13 llGla~s~~wp~~~r~~~~~i~s 35 (56)
T PF08138_consen 13 LLGLAQSWEWPWQRRTTKFPIPS 35 (56)
T ss_dssp ---------S---S---S-SSSS
T ss_pred HHHHHhcccccccCCCCCCCCCC
Confidence 33455556899999998877643
No 121
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=24.35 E-value=1.6e+02 Score=17.31 Aligned_cols=54 Identities=7% Similarity=0.093 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-heeeCCCccccCC
Q 034532 8 LAEHLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTT-LVTVPNWPFFNRH 62 (92)
Q Consensus 8 lae~l~~~il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l~~-lvvvP~WP~ynr~ 62 (92)
..||+.+.++.+.-++..+.+..... ...+...++..+++. .=..|.+...+.|
T Consensus 7 ~~dR~~R~~~G~~l~~~~~~~~~~~~-~~~~~~~g~~ll~~g~~g~Cp~~~llgi~ 61 (66)
T PF11127_consen 7 TTDRIVRIIIGIVLLALGLLGLFGSW-GWLLGFVGAMLLVTGITGFCPLYALLGIN 61 (66)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHHHHHCcCHhHHHhCCC
Confidence 46888888777666666666654433 333333333334333 3456666666533
No 122
>PF05038 Cytochrom_B558a: Cytochrome Cytochrome b558 alpha-subunit; InterPro: IPR007732 Flavocytochrome b558 is the catalytic core of the respiratory-burst oxidase, an enzyme complex that catalyzes the NADPH-dependent reduction of O2 into the superoxide anion O2 in phagocytic cells. Flavocytochrome b558 is anchored in the plasma membrane. It is a heterodimer that consists of a large glycoprotein gp91phox (phox forphagocyte oxidase) (beta subunit) and a small protein p22phox (alpha subunit). The other components of the respiratory-burst oxidase are water-soluble proteins of cytosolic origin, namely p67phox, p47phox, p40phox and Rac. Upon cell stimulation, they assemble with the membrane-bound flavocytochrome b558 which becomes activated and generates O2- []. ; GO: 0020037 heme binding; PDB: 1WLP_A.
Probab=24.28 E-value=25 Score=26.35 Aligned_cols=44 Identities=20% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCCccccCCC
Q 034532 14 QILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTLVTVPNWPFFNRHP 63 (92)
Q Consensus 14 ~~il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l~~lvvvP~WP~ynr~p 63 (92)
-++|++++++| +.|.+.+-.+ -..+++...+||+=.||-=+|++
T Consensus 17 g~il~~Ggiv~-~aG~f~~w~f-----gay~iaaGvfV~LlEYPRgkR~K 60 (186)
T PF05038_consen 17 GLILLTGGIVA-VAGQFKQWYF-----GAYSIAAGVFVCLLEYPRGKRKK 60 (186)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHhCCeee-eccccccchh-----hHHHHHHhHhheeeecccccccC
Confidence 34777888888 4565554333 23445555677777888665543
No 123
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=24.14 E-value=1.3e+02 Score=26.66 Aligned_cols=36 Identities=22% Similarity=0.389 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHH---HHHHHHHHHHHHHHHH--HHHHHHHH
Q 034532 5 GQKLAEHLMQIL---LLAFAVVAFATGYIMG--SFQMMILI 40 (92)
Q Consensus 5 GQ~lae~l~~~i---l~i~aiisfi~Gy~~q--s~~~t~~~ 40 (92)
=|++++|+..+- .++.+++.|+..++.. ++...++.
T Consensus 318 iqrlaDr~a~~fvp~vl~ia~l~f~~w~~~~~~~~~~a~~~ 358 (713)
T COG2217 318 IQRLADRVASYFVPVVLVIAALTFALWPLFGGGDWETALYR 358 (713)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 489999977663 4456666677554544 34444433
No 124
>PRK10983 putative inner membrane protein; Provisional
Probab=23.70 E-value=59 Score=25.91 Aligned_cols=49 Identities=18% Similarity=0.424 Sum_probs=24.7
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCCccccC
Q 034532 6 QKLAEHLMQ--ILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTLVTVPNWPFFNR 61 (92)
Q Consensus 6 Q~lae~l~~--~il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l~~lvvvP~WP~ynr 61 (92)
|+..+...+ ..+.+.+++.+.++|+...|... ++.++++..--||.|+|
T Consensus 4 ~~~~~~~~~~~~~~~l~~~l~~~~~~il~pFl~~-------ll~A~iLa~a~~Pl~~~ 54 (368)
T PRK10983 4 VRQPRDLAQILLSVLFIAIMIVACFWVVQPFILG-------FAWAGMVVIATWPLLLK 54 (368)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 444444433 23333455556666766654443 33444444445888864
No 125
>PF07245 Phlebovirus_G2: Phlebovirus glycoprotein G2; InterPro: IPR009878 This domain is found in several Phlebovirus glycoprotein G2 sequences. Members of the Bunyaviridae family acquire an envelope by budding through the lipid bilayer of the Golgi complex. The budding compartment is thought to be determined by the accumulation of the two heterodimeric membrane glycoproteins G1 and G2 in the Golgi [].
Probab=23.61 E-value=1.4e+02 Score=25.44 Aligned_cols=23 Identities=4% Similarity=0.008 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 034532 17 LLAFAVVAFATGYIMGSFQMMIL 39 (92)
Q Consensus 17 l~i~aiisfi~Gy~~qs~~~t~~ 39 (92)
=++.++++++.|++..-+....+
T Consensus 454 ~w~sgl~~~l~g~~~~~~~Il~~ 476 (507)
T PF07245_consen 454 NWLSGLISWLGGPWKTILIILGF 476 (507)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHH
Confidence 34677888888888765544433
No 126
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=23.27 E-value=2.3e+02 Score=18.82 Aligned_cols=18 Identities=11% Similarity=0.183 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034532 19 AFAVVAFATGYIMGSFQM 36 (92)
Q Consensus 19 i~aiisfi~Gy~~qs~~~ 36 (92)
+-+++.|++|++++....
T Consensus 30 ~~~~~~~~~Gi~~~~~l~ 47 (101)
T PRK13707 30 IPAAICIGWGITTSKYLF 47 (101)
T ss_pred HHHHHHHHHHHHHchHHH
Confidence 345677888988886443
No 127
>PF03203 MerC: MerC mercury resistance protein
Probab=23.22 E-value=2.3e+02 Score=18.70 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 7 KLAEHLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVL 47 (92)
Q Consensus 7 ~lae~l~~~il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l 47 (92)
...++.+-++.+..+++++..||-.-.=...+.....|..+
T Consensus 37 ~~~h~~ll~~~~~i~~~al~~g~r~h~~~~~~~l~~~G~~l 77 (116)
T PF03203_consen 37 EWFHWLLLYLFLPIALLALFRGYRRHRRWLPLALGVIGLAL 77 (116)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Confidence 44566677777788888888888755433333344444433
No 128
>PRK10835 hypothetical protein; Provisional
Probab=22.76 E-value=44 Score=26.57 Aligned_cols=24 Identities=21% Similarity=0.612 Sum_probs=15.2
Q ss_pred HHHheeeCCCc-cccCCCCCccCCC
Q 034532 47 LTTLVTVPNWP-FFNRHPLKWLDPS 70 (92)
Q Consensus 47 l~~lvvvP~WP-~ynr~pl~W~~p~ 70 (92)
+.-++.-.=|- .|++=|+||+=.+
T Consensus 340 ~~q~~~S~~Wl~~f~~GPlEwLwR~ 364 (373)
T PRK10835 340 AANILFSVIWLRYFRQGPVEWLWRQ 364 (373)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 33344444554 7899999997543
No 129
>KOG1558 consensus Fe2+/Zn2+ regulated transporter [Inorganic ion transport and metabolism]
Probab=22.65 E-value=2e+02 Score=23.07 Aligned_cols=54 Identities=24% Similarity=0.428 Sum_probs=33.6
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH--heeeCC
Q 034532 2 DWQGQKLAEHLMQILLLAFAVVAFATGYIM---------GSFQMMILIYAGGVVLTT--LVTVPN 55 (92)
Q Consensus 2 Df~GQ~lae~l~~~il~i~aiisfi~Gy~~---------qs~~~t~~~~~~g~~l~~--lvvvP~ 55 (92)
|..++....-+.-.++.+.++++...-++. +.+...+.+|++|++++. +=++|+
T Consensus 11 ~~~~~~~lKi~ai~vil~~s~i~~~~Pl~~~~~~~~~~~~~~~~~~kcFa~GViLaT~FlH~Lpd 75 (327)
T KOG1558|consen 11 DKMGALLLKIVAIFVILLLSLIGGLLPLFVRRTSALQPESRFLSLVKCFAGGVILATGFLHLLPD 75 (327)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHhcchHhhccccccCCccchHHHHHHHhccHHHHHHHHHhChh
Confidence 344444444455555566666666666665 456777788999998765 334554
No 130
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=22.64 E-value=2.6e+02 Score=19.16 Aligned_cols=25 Identities=8% Similarity=-0.069 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 14 QILLLAFAVVAFATGYIMGSFQMMI 38 (92)
Q Consensus 14 ~~il~i~aiisfi~Gy~~qs~~~t~ 38 (92)
-++..+++++++++|....=+.-.+
T Consensus 27 ~~~a~~~~~~g~~~gl~la~~~g~~ 51 (121)
T PF11990_consen 27 GLAAGVGFVAGLVVGLPLALLTGWW 51 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556677777777665554443
No 131
>PF13687 DUF4153: Domain of unknown function (DUF4153)
Probab=22.50 E-value=2e+02 Score=20.94 Aligned_cols=22 Identities=18% Similarity=0.070 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHheeeCCCcccc
Q 034532 39 LIYAGGVVLTTLVTVPNWPFFN 60 (92)
Q Consensus 39 ~~~~~g~~l~~lvvvP~WP~yn 60 (92)
++.+..++++++.+.+|+..+|
T Consensus 183 ~i~~~~~~~~l~~~~~P~~~~~ 204 (217)
T PF13687_consen 183 YIPLSLAILLLLSSFGPLDPFR 204 (217)
T ss_pred HHHHHHHHHHHHHHhCCCCHHH
Confidence 3444555566666666665543
No 132
>PRK00523 hypothetical protein; Provisional
Probab=22.38 E-value=1.6e+02 Score=18.86 Aligned_cols=16 Identities=25% Similarity=0.436 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 034532 16 LLLAFAVVAFATGYIM 31 (92)
Q Consensus 16 il~i~aiisfi~Gy~~ 31 (92)
+.+++.++|++.||+.
T Consensus 10 l~i~~li~G~~~Gffi 25 (72)
T PRK00523 10 LGIPLLIVGGIIGYFV 25 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344455555555554
No 133
>TIGR02213 lolE_release lipoprotein releasing system, transmembrane protein LolE. This protein is part of an unusual ABC transporter complex that releases lipoproteins from the periplasmic side of the bacterial inner membrane, rather than transport any substrate across the inner membrane. In some species, the permease-like transmembrane protein is represented by two paralogs, LolC and LolE, both in the LolCDE complex. This family consists of LolE, as found in E. coli and related species.
Probab=22.33 E-value=89 Score=24.49 Aligned_cols=14 Identities=14% Similarity=0.040 Sum_probs=8.3
Q ss_pred eeCCCccccCCCCC
Q 034532 52 TVPNWPFFNRHPLK 65 (92)
Q Consensus 52 vvP~WP~ynr~pl~ 65 (92)
..|.|-.-+.+|.+
T Consensus 393 ~~Pa~~a~r~~p~~ 406 (411)
T TIGR02213 393 WYPASRAAKLQPAQ 406 (411)
T ss_pred HHHHHHHhcCCHHH
Confidence 34666666666653
No 134
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=22.22 E-value=1.8e+02 Score=18.15 Aligned_cols=8 Identities=38% Similarity=0.779 Sum_probs=4.1
Q ss_pred ccccCCCC
Q 034532 57 PFFNRHPL 64 (92)
Q Consensus 57 P~ynr~pl 64 (92)
-+|++|.+
T Consensus 63 g~~k~~gl 70 (93)
T PF12666_consen 63 GFFKKDGL 70 (93)
T ss_pred HhhhhcCC
Confidence 35555554
No 135
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=22.04 E-value=65 Score=20.30 Aligned_cols=15 Identities=33% Similarity=0.616 Sum_probs=12.5
Q ss_pred CCccHHHHHHHHHHH
Q 034532 2 DWQGQKLAEHLMQIL 16 (92)
Q Consensus 2 Df~GQ~lae~l~~~i 16 (92)
|+.|++++.++...+
T Consensus 55 D~aG~~i~~~~~~~l 69 (81)
T cd01027 55 DRKGEKIRKKLSEYL 69 (81)
T ss_pred CHHHHHHHHHHHHHh
Confidence 889999999887753
No 136
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=21.92 E-value=2.5e+02 Score=21.13 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=13.8
Q ss_pred CCCccHHHHHHHHHHHH
Q 034532 1 MDWQGQKLAEHLMQILL 17 (92)
Q Consensus 1 iDf~GQ~lae~l~~~il 17 (92)
+|=+.||.+|++-..+-
T Consensus 125 idNpDQRIteDi~~f~~ 141 (281)
T PF06472_consen 125 IDNPDQRITEDIRKFTE 141 (281)
T ss_pred cccHhhHHHHHHHHHHH
Confidence 57789999999887754
No 137
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=21.91 E-value=3.8e+02 Score=20.71 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=13.4
Q ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHh
Q 034532 24 AFATGYIMG-----SFQMMILIYAGGVVLTTL 50 (92)
Q Consensus 24 sfi~Gy~~q-----s~~~t~~~~~~g~~l~~l 50 (92)
..++|++.+ ++...+++.++..+++.+
T Consensus 413 p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i 444 (465)
T TIGR00894 413 STLAGNILSQDSKNVWLIVFLIMAFVNILCVI 444 (465)
T ss_pred HHhhheeeCCCCchHHHHHHHHHHHHHHHHHH
Confidence 445555432 255555555555555443
No 138
>PF13131 DUF3951: Protein of unknown function (DUF3951)
Probab=21.89 E-value=1.2e+02 Score=18.42 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHH
Q 034532 17 LLAFAVVAFATGYIM 31 (92)
Q Consensus 17 l~i~aiisfi~Gy~~ 31 (92)
+....++.|++|+++
T Consensus 9 ~~~~~~I~~lIgfit 23 (53)
T PF13131_consen 9 ILFTIFIFFLIGFIT 23 (53)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555566677777754
No 139
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=21.74 E-value=2.5e+02 Score=20.74 Aligned_cols=25 Identities=20% Similarity=0.585 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHheeeCCCccccCCCCCccC
Q 034532 37 MILIYAGGVVLTTLVTVPNWPFFNRHPLKWLD 68 (92)
Q Consensus 37 t~~~~~~g~~l~~lvvvP~WP~ynr~pl~W~~ 68 (92)
.++.+++|++++ -|.+|. .-+.|..
T Consensus 157 ~~~sfl~g~~~~------~wl~y~-q~iywek 181 (205)
T PF07895_consen 157 SLLSFLSGLLLL------MWLVYF-QIIYWEK 181 (205)
T ss_pred HHHHHHHHHHHH------HHHHHH-HHheeec
Confidence 344455555444 466662 3345543
No 140
>PHA03405 hypothetical protein; Provisional
Probab=21.71 E-value=1.6e+02 Score=20.70 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 12 LMQILLLAFAVVAFATGYIMGSFQMM 37 (92)
Q Consensus 12 l~~~il~i~aiisfi~Gy~~qs~~~t 37 (92)
+..+.-.+.++++++.-.+|.|+...
T Consensus 70 iiWifq~i~svv~yl~~iFTsSi~LL 95 (130)
T PHA03405 70 LIWIVTSIFAVVVFIFNVFTTSLSLL 95 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33333444555555555556665544
No 141
>KOG4453 consensus Predicted ER membrane protein [Function unknown]
Probab=21.56 E-value=75 Score=25.03 Aligned_cols=52 Identities=19% Similarity=0.203 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCCccccCCCC
Q 034532 12 LMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTLVTVPNWPFFNRHPL 64 (92)
Q Consensus 12 l~~~il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l~~lvvvP~WP~ynr~pl 64 (92)
..+.++..+.+..+-.|+-...+..- .++..--+++..+..-+||.|+|--.
T Consensus 70 v~hssigf~~l~l~g~g~kr~~i~~~-Li~kfi~ifigdlirlnWP~FsrLy~ 121 (269)
T KOG4453|consen 70 VAHSSIGFALLLLFGSGTKRNVIQQS-LIRKFIHIFIGDLIRLNWPIFSRLYI 121 (269)
T ss_pred HhhhhHHHHHHHHHhcccchhhhhHH-HHHHHHHHHHhHHHHhccHHHHHHHH
Confidence 34445555555555555544444443 33444445556667779999986433
No 142
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=21.54 E-value=2.2e+02 Score=26.10 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 11 HLMQILLLAFAVVAFATGYIMGSFQMM 37 (92)
Q Consensus 11 ~l~~~il~i~aiisfi~Gy~~qs~~~t 37 (92)
..+.++|++.++++|+.|.+.+-+...
T Consensus 62 ~~~~~iL~~aails~~~~~~~~~~iIl 88 (1053)
T TIGR01523 62 NAMCMVLIIAAAISFAMHDWIEGGVIS 88 (1053)
T ss_pred CHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 345578888999999998766544333
No 143
>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=21.50 E-value=1.8e+02 Score=21.37 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 16 LLLAFAVVAFATGYIMGSFQMMILIYAGGVVL 47 (92)
Q Consensus 16 il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l 47 (92)
++...|+.|.++|+..|+...- +.+|+.+
T Consensus 114 lla~~G~~glaigla~q~~~~n---~~~Gi~i 142 (316)
T COG0668 114 LLAGLGALGLAIGLALQDLLSN---LIAGIFL 142 (316)
T ss_pred HHHHhhHHHHHHHHHHHHHHHH---HHhhhHh
Confidence 4555677788888888865544 4445443
No 144
>COG5413 Uncharacterized integral membrane protein [Function unknown]
Probab=21.11 E-value=3.2e+02 Score=20.16 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034532 19 AFAVVAFATGYIMGSFQMMILIYAGGVVLTTL 50 (92)
Q Consensus 19 i~aiisfi~Gy~~qs~~~t~~~~~~g~~l~~l 50 (92)
..+.++|..|-..-|+..+....++|++...+
T Consensus 26 ~lAal~f~lg~al~~~~~~~~~ia~~l~~~sl 57 (168)
T COG5413 26 VLAALMFLLGPALADIAHTGLLIAATLCASSL 57 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889998899999988888888876543
No 145
>PRK13735 conjugal transfer mating pair stabilization protein TraG; Provisional
Probab=21.08 E-value=2.5e+02 Score=25.92 Aligned_cols=47 Identities=11% Similarity=-0.046 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCCc
Q 034532 10 EHLMQILLLAFAVVAFATGYIMGSFQMMILIYAGGVVLTTLVTVPNWP 57 (92)
Q Consensus 10 e~l~~~il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l~~lvvvP~WP 57 (92)
..++++.++++.++..+.....-+....+.-++..+++. ++++|-=.
T Consensus 30 ~sl~~Ialligvi~~~~~~i~~~n~~~~~kW~~~~~li~-~L~~Pk~t 76 (942)
T PRK13735 30 DSIEKIALTLSVLAVAVMWVQRHNVMDLLGWVAVFVLIS-LLVNVRTS 76 (942)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-Hhcccccc
Confidence 456666666655555544334435544433333334444 66666433
No 146
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=21.06 E-value=2.8e+02 Score=18.77 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 034532 11 HLMQILLLAFAVVAFATGYIM----GSFQMMILIYAGGVVLTT 49 (92)
Q Consensus 11 ~l~~~il~i~aiisfi~Gy~~----qs~~~t~~~~~~g~~l~~ 49 (92)
|+.+.+..+..+++-+.+++. .++...+|..+.|+++.+
T Consensus 7 r~~~~~~~~~~i~~gi~~l~~~~~~~~~i~~~Y~i~fg~ll~~ 49 (136)
T PF08507_consen 7 RILNIIAGILLILAGILSLFNSFSFSSFILGVYCILFGLLLIL 49 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554 244555555555555444
No 147
>COG0472 Rfe UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis, outer membrane]
Probab=20.97 E-value=3.1e+02 Score=21.57 Aligned_cols=7 Identities=43% Similarity=0.733 Sum_probs=5.1
Q ss_pred cccCCCC
Q 034532 58 FFNRHPL 64 (92)
Q Consensus 58 ~ynr~pl 64 (92)
+||+||-
T Consensus 206 ~~N~~PA 212 (319)
T COG0472 206 WFNFYPA 212 (319)
T ss_pred HhcCChh
Confidence 5888883
No 148
>PRK10671 copA copper exporting ATPase; Provisional
Probab=20.88 E-value=3.1e+02 Score=24.09 Aligned_cols=26 Identities=23% Similarity=0.407 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 034532 6 QKLAEHLMQILLL---AFAVVAFATGYIM 31 (92)
Q Consensus 6 Q~lae~l~~~il~---i~aiisfi~Gy~~ 31 (92)
|++++++..+.+. +.+++.|++.++.
T Consensus 430 ~~~~d~~a~~~v~~v~~~a~~~~~~~~~~ 458 (834)
T PRK10671 430 GQLADKISAVFVPVVVVIALVSAAIWYFF 458 (834)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888888765433 3444455554444
No 149
>COG5346 Predicted membrane protein [Function unknown]
Probab=20.84 E-value=3.2e+02 Score=19.50 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034532 9 AEHLMQILLLAFAVVAFATGYI 30 (92)
Q Consensus 9 ae~l~~~il~i~aiisfi~Gy~ 30 (92)
-+++.++++.++|+.=.+.+|.
T Consensus 86 ~~~~tril~liFgi~LVvsi~~ 107 (136)
T COG5346 86 YAKLTRILLLIFGIFLVVSIFP 107 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888766555553
No 150
>PRK10814 outer membrane-specific lipoprotein transporter subunit LolC; Provisional
Probab=20.56 E-value=88 Score=24.30 Aligned_cols=16 Identities=13% Similarity=0.063 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 034532 16 LLLAFAVVAFATGYIM 31 (92)
Q Consensus 16 il~i~aiisfi~Gy~~ 31 (92)
+-.+++++|.++|+..
T Consensus 321 ~~~~G~~~G~~lg~~l 336 (399)
T PRK10814 321 AGIIGALLGALLGALL 336 (399)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344556666666644
No 151
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=20.54 E-value=4e+02 Score=22.08 Aligned_cols=28 Identities=7% Similarity=0.148 Sum_probs=14.7
Q ss_pred cHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 034532 5 GQKLAEHLMQILLLAF---AVVAFATGYIMG 32 (92)
Q Consensus 5 GQ~lae~l~~~il~i~---aiisfi~Gy~~q 32 (92)
=|+.++++.++...+. +++.|++.++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (536)
T TIGR01512 161 TQRFIDRFARYYTPVVLAIALAIWLVPGLLK 191 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3677777765544333 444455544433
No 152
>PF07436 Curto_V3: Curtovirus V3 protein; InterPro: IPR009997 This family consists of several Curtovirus V3 proteins of around 90 residues in length. The function of this family is unknown.
Probab=20.51 E-value=24 Score=23.27 Aligned_cols=7 Identities=43% Similarity=1.255 Sum_probs=3.3
Q ss_pred eeeCCCc
Q 034532 51 VTVPNWP 57 (92)
Q Consensus 51 vvvP~WP 57 (92)
+|+|+|-
T Consensus 2 VClPDWl 8 (87)
T PF07436_consen 2 VCLPDWL 8 (87)
T ss_pred ccchhHH
Confidence 4455553
No 153
>COG5232 SEC62 Preprotein translocase subunit Sec62 [Intracellular trafficking and secretion]
Probab=20.50 E-value=59 Score=25.39 Aligned_cols=28 Identities=32% Similarity=0.382 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHheeeCCCccccCCCC
Q 034532 37 MILIYAGGVVLTTLVTVPNWPFFNRHPL 64 (92)
Q Consensus 37 t~~~~~~g~~l~~lvvvP~WP~ynr~pl 64 (92)
++.+.+...++.+||+.|=||.+=|...
T Consensus 152 ~~l~~~fvlv~lalVlfplWPr~mr~g~ 179 (259)
T COG5232 152 LVLCGVFVLVTLALVLFPLWPRNMRQGL 179 (259)
T ss_pred hhHHHHHHHHHHHHHHHhcCchHhhcCe
Confidence 3344444555667899999998866544
No 154
>PF06432 GPI2: Phosphatidylinositol N-acetylglucosaminyltransferase; InterPro: IPR009450 Glycosylphosphatidylinositol (GPI) represents an important anchoring molecule for cell surface proteins. The first step in its synthesis is the transfer of N-acetylglucosamine (GlcNAc) from UDP-N-acetylglucosamine to phosphatidylinositol (PI). This step involves products of three or four genes in both yeast (GPI1, GPI2 and GPI3) and mammals (GPI1, PIG A, PIG H and PIG C), respectively.; GO: 0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity, 0006506 GPI anchor biosynthetic process, 0016021 integral to membrane
Probab=20.48 E-value=1.9e+02 Score=22.19 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHheeeCCCccc
Q 034532 33 SFQMMILIYAGGVVLTTLVTVPNWPFF 59 (92)
Q Consensus 33 s~~~t~~~~~~g~~l~~lvvvP~WP~y 59 (92)
.+..++....+.+++...++.|-|=.+
T Consensus 243 ~~~~~~~~~~~~~~~~i~~v~P~~~v~ 269 (282)
T PF06432_consen 243 PLSWSLAVLFLLLVLFITFVCPWWFVR 269 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444455567776543
No 155
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=20.37 E-value=2.4e+02 Score=18.56 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q 034532 16 LLLAFAVVAFATGYI 30 (92)
Q Consensus 16 il~i~aiisfi~Gy~ 30 (92)
.++...++||+++=.
T Consensus 6 ~~~~Li~~~fi~~k~ 20 (83)
T PF05814_consen 6 LFLALIVLGFIFDKN 20 (83)
T ss_pred HHHHHHHHHHHHccc
Confidence 334445556665533
Done!