Query 034532
Match_columns 92
No_of_seqs 103 out of 205
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 05:46:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034532.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034532hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qle_D Cytochrome AA3, ccytoch 64.3 12 0.00041 20.8 4.0 23 1-23 8-30 (43)
2 1m56_D Cytochrome C oxidase; m 56.5 19 0.00064 20.7 4.0 23 1-23 16-38 (51)
3 2iub_A CORA, divalent cation t 50.7 4.4 0.00015 30.5 0.7 55 8-62 301-360 (363)
4 3arc_I Photosystem II reaction 48.3 29 0.001 19.0 3.6 25 9-33 3-27 (38)
5 3udc_A Small-conductance mecha 44.6 46 0.0016 24.1 5.4 29 16-47 95-123 (285)
6 2vv5_A MSCS, small-conductance 35.3 55 0.0019 23.8 4.6 28 17-47 97-124 (286)
7 2e5n_A RNA polymerase II elong 31.9 16 0.00053 23.9 1.0 11 53-63 77-87 (100)
8 3ukw_C Bimax1 peptide; arm rep 31.0 24 0.00083 17.8 1.4 16 60-75 8-23 (28)
9 3rt3_C NS1, NS1B, non-structur 30.2 24 0.00082 22.9 1.7 16 1-16 40-55 (109)
10 2l10_A Talin-1; helical bundle 30.0 25 0.00084 24.4 1.8 20 1-20 2-21 (158)
11 2auh_B Growth factor receptor- 29.4 7.5 0.00026 23.3 -0.8 7 1-7 19-25 (59)
12 1hgv_A PH75 inovirus major coa 28.0 65 0.0022 18.0 3.0 20 1-20 1-20 (46)
13 4ev6_A Magnesium transport pro 28.0 4.2 0.00014 30.3 -2.6 25 11-35 280-304 (339)
14 2doa_A RNA polymerase II elong 27.4 15 0.00053 24.1 0.4 11 53-63 76-86 (104)
15 3hd7_B Syntaxin-1A; membrane p 24.3 1.2E+02 0.0041 19.1 4.3 23 6-28 79-101 (109)
No 1
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=64.25 E-value=12 Score=20.81 Aligned_cols=23 Identities=13% Similarity=-0.070 Sum_probs=16.3
Q ss_pred CCCccHHHHHHHHHHHHHHHHHH
Q 034532 1 MDWQGQKLAEHLMQILLLAFAVV 23 (92)
Q Consensus 1 iDf~GQ~lae~l~~~il~i~aii 23 (92)
||+.-|+.+.+.+-.....++++
T Consensus 8 MD~~~hE~Ty~gFi~~~k~gt~~ 30 (43)
T 1qle_D 8 MDIRHQQATFAGFIKGATWVSIL 30 (43)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHH
Confidence 89999999988766555444443
No 2
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=56.51 E-value=19 Score=20.72 Aligned_cols=23 Identities=26% Similarity=0.057 Sum_probs=16.3
Q ss_pred CCCccHHHHHHHHHHHHHHHHHH
Q 034532 1 MDWQGQKLAEHLMQILLLAFAVV 23 (92)
Q Consensus 1 iDf~GQ~lae~l~~~il~i~aii 23 (92)
|||.-|+.+.+.+-.....++++
T Consensus 16 MD~~~he~Ty~gFi~~~k~gt~~ 38 (51)
T 1m56_D 16 MDITQQEKTFAGFVRMVTWAAVV 38 (51)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHH
Confidence 89999999988766555444443
No 3
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=50.67 E-value=4.4 Score=30.54 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHheeeCCCccccCC
Q 034532 8 LAEHLMQILLLAFAVVAFATGYIMGSFQMM-----ILIYAGGVVLTTLVTVPNWPFFNRH 62 (92)
Q Consensus 8 lae~l~~~il~i~aiisfi~Gy~~qs~~~t-----~~~~~~g~~l~~lvvvP~WP~ynr~ 62 (92)
..-+.+.++-+++....|+.|++--+|..| -+.|.+.+++.+++++=.|-+|+|.
T Consensus 301 ~imk~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~~~~~~~Fkrk 360 (363)
T 2iub_A 301 EVMKVLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIMVVYFKKK 360 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHHHTTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334455566667777799999888777643 2344444444444444455666654
No 4
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=48.26 E-value=29 Score=18.98 Aligned_cols=25 Identities=20% Similarity=0.523 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 9 AEHLMQILLLAFAVVAFATGYIMGS 33 (92)
Q Consensus 9 ae~l~~~il~i~aiisfi~Gy~~qs 33 (92)
+=++.-++.+++-+-=|+.|+..+|
T Consensus 3 tLKi~Vy~vV~ffvsLFiFGfLsnD 27 (38)
T 3arc_I 3 TLKITVYIVVTFFVLLFVFGFLSGD 27 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTG
T ss_pred eEEeeehhHHHHHHHHHHccccCCC
Confidence 3456667777777777777777655
No 5
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=44.59 E-value=46 Score=24.14 Aligned_cols=29 Identities=17% Similarity=0.246 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 16 LLLAFAVVAFATGYIMGSFQMMILIYAGGVVL 47 (92)
Q Consensus 16 il~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l 47 (92)
++...|++|.++|+..|+...- +.+|+.+
T Consensus 95 l~a~~g~~g~aig~a~q~~l~n---~~~Gi~i 123 (285)
T 3udc_A 95 LLAVAGIGSLAIGFGAQNLVKD---MISGFFI 123 (285)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 3445566777788887765433 4455544
No 6
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=35.28 E-value=55 Score=23.77 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 17 LLAFAVVAFATGYIMGSFQMMILIYAGGVVL 47 (92)
Q Consensus 17 l~i~aiisfi~Gy~~qs~~~t~~~~~~g~~l 47 (92)
+...|++|.++|+..|+...- +.+|+.+
T Consensus 97 ~a~~g~~g~aig~a~q~~l~n---~~sGi~i 124 (286)
T 2vv5_A 97 IAVLGAAGLVVGLALQGSLSN---LAAGVLL 124 (286)
T ss_dssp HHHHHHHHHHHHHHHTHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhhhHH
Confidence 445577788888888865443 4555543
No 7
>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.93 E-value=16 Score=23.91 Aligned_cols=11 Identities=18% Similarity=0.604 Sum_probs=8.4
Q ss_pred eCCCccccCCC
Q 034532 53 VPNWPFFNRHP 63 (92)
Q Consensus 53 vP~WP~ynr~p 63 (92)
=++||+|+.+.
T Consensus 77 q~dWp~Yte~e 87 (100)
T 2e5n_A 77 QRDWPGYSEID 87 (100)
T ss_dssp CTTCTTCCTTH
T ss_pred ccCCCCCCHHH
Confidence 36899998764
No 8
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=31.05 E-value=24 Score=17.83 Aligned_cols=16 Identities=25% Similarity=0.740 Sum_probs=10.7
Q ss_pred cCCCCCccCCCCCccC
Q 034532 60 NRHPLKWLDPSEAEKH 75 (92)
Q Consensus 60 nr~pl~W~~p~~~~~~ 75 (92)
++.|++|.+.....++
T Consensus 8 rkrplewdedeepprk 23 (28)
T 3ukw_C 8 RKRPLEWDEDEEPPRK 23 (28)
T ss_dssp CCCCCCCCGGGSCCSS
T ss_pred ccCCcccccccCcchh
Confidence 5789999765544443
No 9
>3rt3_C NS1, NS1B, non-structural protein 1; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Influenza b virus} PDB: 1xeq_A 3sdl_A 3r66_A
Probab=30.18 E-value=24 Score=22.89 Aligned_cols=16 Identities=31% Similarity=0.517 Sum_probs=12.8
Q ss_pred CCCccHHHHHHHHHHH
Q 034532 1 MDWQGQKLAEHLMQIL 16 (92)
Q Consensus 1 iDf~GQ~lae~l~~~i 16 (92)
.||+||.+..++-+-+
T Consensus 40 ldypgq~rl~rlk~kl 55 (109)
T 3rt3_C 40 LDYPGQDRLHRLKRKL 55 (109)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred cCCCchhHHHHHHHHH
Confidence 5999999988876654
No 10
>2l10_A Talin-1; helical bundle, cytoskeleton, focal adhesion, structu protein; NMR {Mus musculus}
Probab=29.98 E-value=25 Score=24.43 Aligned_cols=20 Identities=15% Similarity=-0.011 Sum_probs=14.8
Q ss_pred CCCccHHHHHHHHHHHHHHH
Q 034532 1 MDWQGQKLAEHLMQILLLAF 20 (92)
Q Consensus 1 iDf~GQ~lae~l~~~il~i~ 20 (92)
||.+|||-.|+.++-|=-..
T Consensus 2 ~~LPGqrdvd~Ai~~I~~as 21 (158)
T 2l10_A 2 IDPFTQRDVDNALRAVGDAS 21 (158)
T ss_dssp CCCSSSHHHHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHHHH
Confidence 78999999988866654433
No 11
>2auh_B Growth factor receptor-bound protein 14; tyrosine kinase, BPS region, transferase/signaling protein complex; HET: PTR; 3.20A {Homo sapiens}
Probab=29.41 E-value=7.5 Score=23.30 Aligned_cols=7 Identities=71% Similarity=1.203 Sum_probs=5.0
Q ss_pred CCCccHH
Q 034532 1 MDWQGQK 7 (92)
Q Consensus 1 iDf~GQ~ 7 (92)
|||.||.
T Consensus 19 MDFsG~~ 25 (59)
T 2auh_B 19 MDFSGQK 25 (59)
T ss_dssp EECSSSS
T ss_pred EeecCCc
Confidence 6777774
No 12
>1hgv_A PH75 inovirus major coat protein; virus coat protein, helical virus coat protein, ssDNA viruses, filamentous bacteriophage, thermophiles; 2.4A {Bacteriophage PH75} SCOP: h.1.4.1 PDB: 1hgz_A 1hh0_A
Probab=28.03 E-value=65 Score=17.97 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=16.0
Q ss_pred CCCccHHHHHHHHHHHHHHH
Q 034532 1 MDWQGQKLAEHLMQILLLAF 20 (92)
Q Consensus 1 iDf~GQ~lae~l~~~il~i~ 20 (92)
|||.--+.+.+..++|-.+.
T Consensus 1 mdfnpseia~~v~~yi~~ia 20 (46)
T 1hgv_A 1 MDFNPSEVASQVTNYIQAIA 20 (46)
T ss_dssp CCSCTHHHHHHHHTTTHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 89999999988888865543
No 13
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=27.99 E-value=4.2 Score=30.31 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 11 HLMQILLLAFAVVAFATGYIMGSFQ 35 (92)
Q Consensus 11 ~l~~~il~i~aiisfi~Gy~~qs~~ 35 (92)
+.+.++-+++....|+.|++--+|.
T Consensus 280 k~LTiit~IflP~T~IaGiyGMNf~ 304 (339)
T 4ev6_A 280 KILTMVTTIFAVPMWITGIYGMNFS 304 (339)
T ss_dssp HHHHHHHHHSSHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHHHHhhccCcCC
Confidence 3444455556667889998877765
No 14
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=27.39 E-value=15 Score=24.06 Aligned_cols=11 Identities=18% Similarity=0.637 Sum_probs=8.2
Q ss_pred eCCCccccCCC
Q 034532 53 VPNWPFFNRHP 63 (92)
Q Consensus 53 vP~WP~ynr~p 63 (92)
=++||+|+.+.
T Consensus 76 q~dWp~Yte~e 86 (104)
T 2doa_A 76 QKDWPGYSEGD 86 (104)
T ss_dssp CSCCTTCCSHH
T ss_pred cCCCCCCCHHH
Confidence 37899998653
No 15
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=24.30 E-value=1.2e+02 Score=19.11 Aligned_cols=23 Identities=9% Similarity=0.218 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 034532 6 QKLAEHLMQILLLAFAVVAFATG 28 (92)
Q Consensus 6 Q~lae~l~~~il~i~aiisfi~G 28 (92)
|+.+.+...+++++..++..+++
T Consensus 79 qk~~rkk~~i~l~~~~i~~~i~~ 101 (109)
T 3hd7_B 79 QSKARRKKIMIIICCVILGIIIA 101 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCcceehHHHHHHHHHHHH
Confidence 66666666655555544444433
Done!