Query 034532
Match_columns 92
No_of_seqs 103 out of 205
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 05:46:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034532.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034532hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axti1 f.23.37.1 (I:1-35) Pho 53.8 5.3 0.00039 20.3 2.5 24 10-33 4-27 (35)
2 d1xeqa1 a.16.1.1 (A:15-103) N- 34.2 8.7 0.00064 22.7 1.6 16 1-16 26-41 (89)
3 d2vv5a3 f.34.1.1 (A:27-112) Me 23.9 28 0.002 19.2 2.6 15 6-20 40-54 (86)
4 d1ppje2 f.23.12.1 (E:1-69) Iro 17.5 18 0.0013 20.5 0.7 15 51-65 5-19 (69)
5 d2fcja1 c.136.1.1 (A:1-114) Hy 15.7 22 0.0016 21.1 0.8 14 2-15 60-73 (114)
6 d1kqfc_ f.21.1.1 (C:) Formate 14.3 1.4E+02 0.01 18.4 7.0 24 7-30 10-33 (216)
7 d2doaa1 a.4.5.81 (A:8-98) RNA 14.2 21 0.0015 20.7 0.4 9 54-62 70-78 (91)
8 d1pv7a_ f.38.1.2 (A:) Lactose 13.9 72 0.0053 19.7 3.1 16 21-36 363-378 (417)
9 d1iwga8 f.35.1.1 (A:513-566,A: 13.7 1.2E+02 0.0088 19.3 4.4 27 30-56 185-211 (222)
10 d3cx5e2 f.23.12.1 (E:31-86) Ir 13.4 35 0.0025 18.6 1.2 11 52-62 5-15 (56)
No 1
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=53.80 E-value=5.3 Score=20.26 Aligned_cols=24 Identities=21% Similarity=0.537 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 10 EHLMQILLLAFAVVAFATGYIMGS 33 (92)
Q Consensus 10 e~l~~~il~i~aiisfi~Gy~~qs 33 (92)
-++.-++.+++-+--|+.||..+|
T Consensus 4 LKi~Vy~vV~fFv~lFiFGFLSnD 27 (35)
T d2axti1 4 LKITVYIVVTFFVLLFVFGFLSGD 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEehhhHHHHHHHHHHHhhccCC
Confidence 456677777777777888877654
No 2
>d1xeqa1 a.16.1.1 (A:15-103) N-terminal, RNA-binding domain of nonstructural protein NS1 {Influenza B virus [TaxId: 11520]}
Probab=34.21 E-value=8.7 Score=22.74 Aligned_cols=16 Identities=31% Similarity=0.517 Sum_probs=12.7
Q ss_pred CCCccHHHHHHHHHHH
Q 034532 1 MDWQGQKLAEHLMQIL 16 (92)
Q Consensus 1 iDf~GQ~lae~l~~~i 16 (92)
.||+||.+..++-+-+
T Consensus 26 ldypgq~rl~rlk~kl 41 (89)
T d1xeqa1 26 LDYPGQDRLHRLKRKL 41 (89)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred cCCCchhHHHHHHHHH
Confidence 5999999988876653
No 3
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=23.88 E-value=28 Score=19.25 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 034532 6 QKLAEHLMQILLLAF 20 (92)
Q Consensus 6 Q~lae~l~~~il~i~ 20 (92)
++..+++.++++.+.
T Consensus 40 ~~~i~~~~~~~i~~i 54 (86)
T d2vv5a3 40 ADFLSALVRYGIIAF 54 (86)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444556666655444
No 4
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=17.50 E-value=18 Score=20.51 Aligned_cols=15 Identities=20% Similarity=0.536 Sum_probs=12.6
Q ss_pred eeeCCCccccCCCCC
Q 034532 51 VTVPNWPFFNRHPLK 65 (92)
Q Consensus 51 vvvP~WP~ynr~pl~ 65 (92)
|-+|++.-|||...+
T Consensus 5 i~vPDFs~YRr~~~~ 19 (69)
T d1ppje2 5 IKVPDFSDYRRPEVL 19 (69)
T ss_dssp CCCCCCTTTBCGGGC
T ss_pred cCCCCchhhcccccc
Confidence 458999999998875
No 5
>d2fcja1 c.136.1.1 (A:1-114) Hypothetical protein RBSTP2199 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=15.68 E-value=22 Score=21.07 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=11.5
Q ss_pred CCccHHHHHHHHHH
Q 034532 2 DWQGQKLAEHLMQI 15 (92)
Q Consensus 2 Df~GQ~lae~l~~~ 15 (92)
|..||+.++++.+.
T Consensus 60 D~aG~~~a~~l~~~ 73 (114)
T d2fcja1 60 DEAGEKLRRQFRRM 73 (114)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 77899999888765
No 6
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=14.35 E-value=1.4e+02 Score=18.42 Aligned_cols=24 Identities=8% Similarity=0.106 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034532 7 KLAEHLMQILLLAFAVVAFATGYI 30 (92)
Q Consensus 7 ~lae~l~~~il~i~aiisfi~Gy~ 30 (92)
.+.||+.+.+..++-++.++.|+.
T Consensus 10 ~~~~Rl~HW~~a~~~i~L~~TGl~ 33 (216)
T d1kqfc_ 10 KFIDRACHWTVVICFFLVALSGIS 33 (216)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999865
No 7
>d2doaa1 a.4.5.81 (A:8-98) RNA polymerase II elongation factor ELL {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.22 E-value=21 Score=20.68 Aligned_cols=9 Identities=22% Similarity=0.859 Sum_probs=6.4
Q ss_pred CCCccccCC
Q 034532 54 PNWPFFNRH 62 (92)
Q Consensus 54 P~WP~ynr~ 62 (92)
|.||.|+++
T Consensus 70 p~~~~Ys~~ 78 (91)
T d2doaa1 70 KDWPGYSEG 78 (91)
T ss_dssp SCCTTCCSH
T ss_pred ccCCCCCHH
Confidence 677877764
No 8
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=13.92 E-value=72 Score=19.69 Aligned_cols=16 Identities=13% Similarity=0.252 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 034532 21 AVVAFATGYIMGSFQM 36 (92)
Q Consensus 21 aiisfi~Gy~~qs~~~ 36 (92)
.+.+++.|++.+.+..
T Consensus 363 ~i~~~~~G~l~~~~g~ 378 (417)
T d1pv7a_ 363 IFMSVLAGNMYESIGF 378 (417)
T ss_dssp HHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHCH
Confidence 3446788898887643
No 9
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=13.75 E-value=1.2e+02 Score=19.27 Aligned_cols=27 Identities=7% Similarity=0.018 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHheeeCCC
Q 034532 30 IMGSFQMMILIYAGGVVLTTLVTVPNW 56 (92)
Q Consensus 30 ~~qs~~~t~~~~~~g~~l~~lvvvP~W 56 (92)
..+++..++..-+....+..+.++|..
T Consensus 185 ~~~~la~~v~~Gll~s~~~~l~~~Pal 211 (222)
T d1iwga8 185 AQNAVGTGVMGGMVTATVLAIFFVPVF 211 (222)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455444433444444456778875
No 10
>d3cx5e2 f.23.12.1 (E:31-86) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.40 E-value=35 Score=18.61 Aligned_cols=11 Identities=18% Similarity=0.298 Sum_probs=9.3
Q ss_pred eeCCCccccCC
Q 034532 52 TVPNWPFFNRH 62 (92)
Q Consensus 52 vvP~WP~ynr~ 62 (92)
=+|++.-|+|+
T Consensus 5 ~vPDFs~Yr~~ 15 (56)
T d3cx5e2 5 RTPNFDDVLKE 15 (56)
T ss_dssp SCCCCTTTBCC
T ss_pred cCCCcHHhcCC
Confidence 48999999885
Done!