Query 034538
Match_columns 92
No_of_seqs 104 out of 188
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 05:51:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034538.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034538hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wii_A Hypothetical UPF0222 pr 100.0 2.6E-45 8.9E-50 242.0 10.3 82 2-83 2-84 (85)
2 1vq8_Z 50S ribosomal protein L 96.0 0.0028 9.7E-08 40.8 2.0 45 20-70 25-69 (83)
3 1pft_A TFIIB, PFTFIIBN; N-term 95.9 0.0045 1.5E-07 35.4 2.2 33 21-58 4-36 (50)
4 4a17_Y RPL37A, 60S ribosomal p 95.7 0.0052 1.8E-07 41.4 2.2 58 21-84 35-93 (103)
5 3iz5_m 60S ribosomal protein L 95.3 0.008 2.7E-07 39.7 2.0 42 21-68 35-76 (92)
6 3j21_i 50S ribosomal protein L 95.2 0.0081 2.8E-07 39.0 1.8 40 21-66 34-73 (83)
7 3izc_m 60S ribosomal protein R 95.1 0.0088 3E-07 39.5 1.7 41 21-67 35-75 (92)
8 1ffk_W Ribosomal protein L37AE 95.1 0.024 8.2E-07 35.8 3.7 36 18-59 23-58 (73)
9 3jyw_9 60S ribosomal protein L 94.9 0.0067 2.3E-07 38.4 0.8 40 21-66 25-64 (72)
10 1dl6_A Transcription factor II 94.8 0.01 3.4E-07 35.5 1.3 36 18-58 7-42 (58)
11 1k81_A EIF-2-beta, probable tr 94.4 0.047 1.6E-06 29.9 3.4 31 24-57 2-32 (36)
12 3cc2_Z 50S ribosomal protein L 93.7 0.04 1.4E-06 37.7 2.7 45 20-70 58-102 (116)
13 1qyp_A RNA polymerase II; tran 93.6 0.15 5.1E-06 29.7 4.7 38 21-58 14-55 (57)
14 3ga8_A HTH-type transcriptiona 93.2 0.1 3.6E-06 32.0 3.8 35 24-58 4-48 (78)
15 1tfi_A Transcriptional elongat 93.0 0.25 8.7E-06 28.6 5.0 37 21-57 8-48 (50)
16 1twf_I B12.6, DNA-directed RNA 92.2 0.21 7.1E-06 33.4 4.6 32 24-57 6-37 (122)
17 2js4_A UPF0434 protein BB2007; 90.5 0.12 4E-06 32.1 1.8 41 17-63 3-45 (70)
18 2fiy_A Protein FDHE homolog; F 90.3 0.45 1.5E-05 36.6 5.2 58 22-79 222-291 (309)
19 2jr6_A UPF0434 protein NMA0874 89.7 0.2 6.9E-06 30.8 2.3 41 17-63 3-45 (68)
20 3o9x_A Uncharacterized HTH-typ 89.2 0.53 1.8E-05 30.3 4.2 35 24-58 4-48 (133)
21 3j20_Y 30S ribosomal protein S 89.0 0.34 1.2E-05 28.1 2.8 27 24-56 21-47 (50)
22 2fiy_A Protein FDHE homolog; F 88.9 0.47 1.6E-05 36.5 4.4 39 20-58 180-220 (309)
23 2pk7_A Uncharacterized protein 88.6 0.17 6E-06 31.2 1.5 40 18-63 4-45 (69)
24 1twf_I B12.6, DNA-directed RNA 88.4 0.88 3E-05 30.3 5.0 42 18-59 67-113 (122)
25 2k4x_A 30S ribosomal protein S 87.9 0.34 1.2E-05 28.6 2.4 29 22-56 18-46 (55)
26 2hf1_A Tetraacyldisaccharide-1 87.8 0.17 5.8E-06 31.2 1.0 41 17-63 3-45 (68)
27 3h0g_I DNA-directed RNA polyme 87.8 0.24 8.2E-06 32.7 1.9 30 25-56 7-36 (113)
28 2apo_B Ribosome biogenesis pro 87.7 0.21 7.2E-06 30.4 1.4 44 22-77 6-49 (60)
29 1pqv_S STP-alpha, transcriptio 87.2 0.64 2.2E-05 35.4 4.2 38 21-58 267-308 (309)
30 1nui_A DNA primase/helicase; z 87.2 0.25 8.6E-06 35.6 1.8 31 20-55 12-42 (255)
31 2e9h_A EIF-5, eukaryotic trans 86.9 0.97 3.3E-05 32.0 4.7 36 22-58 103-138 (157)
32 3h0g_I DNA-directed RNA polyme 86.8 0.59 2E-05 30.8 3.3 40 17-56 66-110 (113)
33 2aus_D NOP10, ribosome biogene 86.3 0.37 1.3E-05 29.4 1.9 45 22-78 5-49 (60)
34 4esj_A Type-2 restriction enzy 85.8 0.44 1.5E-05 36.4 2.5 60 22-83 34-97 (257)
35 2kpi_A Uncharacterized protein 85.1 0.82 2.8E-05 27.0 3.0 39 17-63 5-47 (56)
36 1gh9_A 8.3 kDa protein (gene M 83.8 1.3 4.3E-05 27.5 3.6 53 22-82 4-56 (71)
37 2jny_A Uncharacterized BCR; st 83.8 0.3 1E-05 30.0 0.7 40 18-63 6-47 (67)
38 4bbr_M Transcription initiatio 83.5 0.64 2.2E-05 35.7 2.6 50 16-74 15-64 (345)
39 2g2k_A EIF-5, eukaryotic trans 82.7 1.6 5.3E-05 31.3 4.2 34 22-56 96-129 (170)
40 2xzm_6 RPS27E; ribosome, trans 82.5 1.8 6E-05 27.8 4.0 38 16-58 23-63 (81)
41 3k1f_M Transcription initiatio 82.5 1.3 4.3E-05 32.7 3.7 54 16-78 15-68 (197)
42 3k7a_M Transcription initiatio 81.9 0.25 8.6E-06 37.7 -0.2 49 16-73 15-63 (345)
43 3po3_S Transcription elongatio 81.6 0.45 1.5E-05 33.8 1.0 38 20-57 135-176 (178)
44 2ct7_A Ring finger protein 31; 79.7 2.7 9.4E-05 25.9 4.1 51 20-76 23-79 (86)
45 1e8j_A Rubredoxin; iron-sulfur 79.7 0.72 2.4E-05 26.9 1.3 18 16-33 30-47 (52)
46 6rxn_A Rubredoxin; electron tr 79.4 0.66 2.3E-05 26.6 1.1 17 17-33 25-41 (46)
47 1nee_A EIF-2-beta, probable tr 79.3 0.54 1.8E-05 32.5 0.8 32 22-56 102-133 (138)
48 1yk4_A Rubredoxin, RD; electro 78.9 0.95 3.2E-05 26.4 1.7 21 16-36 29-49 (52)
49 1vd4_A Transcription initiatio 78.8 0.52 1.8E-05 26.4 0.5 42 19-62 11-55 (62)
50 2v3b_B Rubredoxin 2, rubredoxi 77.5 1.1 3.8E-05 26.4 1.7 23 16-38 30-52 (55)
51 3j21_g 50S ribosomal protein L 77.3 0.24 8.1E-06 29.2 -1.3 25 21-55 13-37 (51)
52 2d74_B Translation initiation 76.3 0.45 1.5E-05 33.3 -0.3 33 21-56 103-135 (148)
53 2kvh_A Zinc finger and BTB dom 76.3 0.84 2.9E-05 20.5 0.7 10 21-30 2-11 (27)
54 2zjr_Z 50S ribosomal protein L 75.2 0.24 8.2E-06 29.9 -1.8 26 18-54 26-51 (60)
55 2kvg_A Zinc finger and BTB dom 74.9 0.8 2.7E-05 20.9 0.4 10 21-30 2-11 (27)
56 1d0q_A DNA primase; zinc-bindi 74.8 1.8 6E-05 27.7 2.2 30 22-55 37-67 (103)
57 2adr_A ADR1; transcription reg 73.9 0.33 1.1E-05 26.3 -1.3 37 22-58 2-42 (60)
58 1p7a_A BF3, BKLF, kruppel-like 73.9 1.2 4.2E-05 21.4 1.0 11 20-30 9-19 (37)
59 2m0d_A Zinc finger and BTB dom 73.0 1.2 4.1E-05 19.9 0.8 10 21-30 2-11 (30)
60 2kn9_A Rubredoxin; metalloprot 72.6 2.2 7.4E-05 27.2 2.2 22 17-38 55-76 (81)
61 2m0e_A Zinc finger and BTB dom 71.9 1.3 4.6E-05 19.6 0.8 9 22-30 2-10 (29)
62 3qt1_I DNA-directed RNA polyme 71.8 0.75 2.6E-05 31.4 -0.1 36 18-56 21-56 (133)
63 1ard_A Yeast transcription fac 71.8 1.4 4.6E-05 19.7 0.9 9 22-30 2-10 (29)
64 3a43_A HYPD, hydrogenase nicke 71.7 3.8 0.00013 27.7 3.5 10 22-31 107-116 (139)
65 4rxn_A Rubredoxin; electron tr 71.5 1.4 4.8E-05 26.0 1.1 20 15-34 29-48 (54)
66 1wd2_A Ariadne-1 protein homol 71.5 0.73 2.5E-05 27.4 -0.2 32 22-59 6-39 (60)
67 2kvf_A Zinc finger and BTB dom 71.0 1.4 4.7E-05 19.8 0.8 9 22-30 3-11 (28)
68 3p2a_A Thioredoxin 2, putative 70.7 0.23 7.8E-06 31.8 -2.8 56 22-81 5-74 (148)
69 2elt_A Zinc finger protein 406 70.3 1.4 4.8E-05 21.0 0.7 11 20-30 7-17 (36)
70 1dx8_A Rubredoxin; electron tr 69.8 2.1 7.1E-05 26.4 1.6 23 16-38 34-56 (70)
71 1paa_A Yeast transcription fac 69.6 1.6 5.5E-05 19.7 0.9 9 22-30 2-10 (30)
72 2els_A Zinc finger protein 406 69.5 1.6 5.3E-05 21.0 0.8 11 20-30 7-17 (36)
73 1rik_A E6APC1 peptide; E6-bind 69.2 1.4 4.9E-05 19.7 0.6 7 23-29 3-9 (29)
74 2elq_A Zinc finger protein 406 68.8 1.6 5.3E-05 21.0 0.7 11 20-30 7-17 (36)
75 2lvu_A Zinc finger and BTB dom 71.6 1 3.5E-05 20.0 0.0 9 22-30 2-10 (26)
76 2elp_A Zinc finger protein 406 68.2 1.6 5.6E-05 21.0 0.7 11 20-30 7-17 (37)
77 2elx_A Zinc finger protein 406 68.2 1.7 5.8E-05 20.5 0.8 10 21-30 6-15 (35)
78 2epq_A POZ-, at HOOK-, and zin 67.9 1.9 6.5E-05 21.9 1.0 10 20-29 36-45 (45)
79 3pwf_A Rubrerythrin; non heme 67.7 1.9 6.4E-05 30.2 1.2 28 18-54 134-161 (170)
80 2m0f_A Zinc finger and BTB dom 67.3 1.7 5.8E-05 19.3 0.7 7 23-29 3-9 (29)
81 1klr_A Zinc finger Y-chromosom 67.1 1.8 6.2E-05 19.3 0.7 9 22-30 2-10 (30)
82 2lvr_A Zinc finger and BTB dom 70.1 1.2 4E-05 20.1 0.0 10 21-30 2-11 (30)
83 1twf_L ABC10-alpha, DNA-direct 66.6 0.48 1.6E-05 29.4 -1.8 30 19-55 25-54 (70)
84 2jvm_A Uncharacterized protein 66.4 6.2 0.00021 25.1 3.4 36 20-59 26-66 (80)
85 3h0g_L DNA-directed RNA polyme 65.8 1 3.5E-05 27.5 -0.4 31 20-57 19-49 (63)
86 1s24_A Rubredoxin 2; electron 65.7 3.1 0.00011 26.8 1.8 19 17-35 63-81 (87)
87 2elr_A Zinc finger protein 406 65.5 2.3 7.8E-05 20.2 1.0 11 20-30 7-17 (36)
88 1dxg_A Desulforedoxin; non-hem 65.1 3.7 0.00013 21.8 1.9 30 18-54 2-31 (36)
89 2kwq_A Protein MCM10 homolog; 65.1 1.1 3.9E-05 29.2 -0.3 32 17-55 43-74 (92)
90 1vzi_A Desulfoferrodoxin; ferr 65.0 3.6 0.00012 27.6 2.2 33 19-58 4-36 (126)
91 2ytb_A Zinc finger protein 32; 64.8 2.4 8.2E-05 20.9 1.0 11 20-30 9-19 (42)
92 2elm_A Zinc finger protein 406 64.7 2.1 7.2E-05 20.9 0.8 11 20-30 7-17 (37)
93 2x5c_A Hypothetical protein OR 64.4 5.1 0.00018 27.0 2.8 19 24-42 54-72 (131)
94 2elv_A Zinc finger protein 406 64.1 2.3 7.7E-05 20.3 0.8 11 20-30 7-17 (36)
95 1srk_A Zinc finger protein ZFP 63.1 2.4 8.3E-05 20.0 0.8 10 21-30 6-15 (35)
96 2kfq_A FP1; protein, de novo p 63.1 2.5 8.4E-05 20.0 0.8 9 22-30 2-10 (32)
97 2au3_A DNA primase; zinc ribbo 62.9 5 0.00017 31.0 2.9 29 23-55 35-64 (407)
98 2elo_A Zinc finger protein 406 62.7 2 6.9E-05 20.6 0.4 11 20-30 7-17 (37)
99 2lvt_A Zinc finger and BTB dom 66.5 1.6 5.4E-05 19.7 0.0 9 22-30 2-10 (29)
100 2eod_A TNF receptor-associated 61.8 2.7 9.2E-05 23.2 0.9 37 20-59 8-50 (66)
101 1njq_A Superman protein; zinc- 61.2 2.8 9.6E-05 20.5 0.8 10 21-30 5-14 (39)
102 2yte_A Zinc finger protein 473 60.7 3.1 0.00011 20.5 1.0 11 20-30 8-18 (42)
103 1rim_A E6APC2 peptide; E6-bind 60.5 2.9 9.8E-05 20.0 0.8 9 22-30 2-10 (33)
104 2en7_A Zinc finger protein 268 60.4 3.1 0.00011 20.7 0.9 11 20-30 10-20 (44)
105 3u5c_f 40S ribosomal protein S 60.1 5.7 0.0002 27.2 2.5 31 23-59 119-151 (152)
106 2el5_A Zinc finger protein 268 59.6 3 0.0001 20.6 0.8 11 20-30 8-18 (42)
107 2eof_A Zinc finger protein 268 59.4 3.1 0.00011 20.7 0.8 11 20-30 10-20 (44)
108 3cw2_K Translation initiation 59.4 0.65 2.2E-05 32.1 -2.4 35 19-56 100-134 (139)
109 2ept_A Zinc finger protein 32; 59.2 3.1 0.00011 20.5 0.8 11 20-30 8-18 (41)
110 2eos_A B-cell lymphoma 6 prote 59.1 3.5 0.00012 20.4 1.0 11 20-30 9-19 (42)
111 2eq1_A Zinc finger protein 347 59.0 3.4 0.00012 20.9 0.9 11 20-30 10-20 (46)
112 2eow_A Zinc finger protein 347 58.9 3.1 0.00011 20.9 0.8 11 20-30 10-20 (46)
113 2yrc_A Protein transport prote 58.9 2.3 7.9E-05 25.3 0.3 13 21-33 32-44 (59)
114 2yu5_A Zinc finger protein 473 58.8 3.1 0.0001 20.9 0.7 11 20-30 10-20 (44)
115 2en3_A ZFP-95, zinc finger pro 58.7 3.2 0.00011 21.0 0.8 11 20-30 10-20 (46)
116 2en2_A B-cell lymphoma 6 prote 58.6 3.3 0.00011 20.4 0.8 11 20-30 9-19 (42)
117 2ytf_A Zinc finger protein 268 58.5 3.2 0.00011 20.9 0.8 11 20-30 10-20 (46)
118 1fv5_A First zinc finger of U- 58.1 2.7 9.2E-05 22.0 0.4 11 20-30 6-16 (36)
119 2dmd_A Zinc finger protein 64, 57.9 1.1 3.7E-05 26.2 -1.4 11 47-57 65-75 (96)
120 2enf_A Zinc finger protein 347 57.9 3.6 0.00012 20.8 0.9 11 20-30 10-20 (46)
121 2eoy_A Zinc finger protein 473 57.5 3.5 0.00012 20.9 0.8 11 20-30 10-20 (46)
122 1qxf_A GR2, 30S ribosomal prot 57.5 11 0.00037 23.2 3.2 30 24-58 9-38 (66)
123 2emb_A Zinc finger protein 473 57.4 3.5 0.00012 20.6 0.8 11 20-30 10-20 (44)
124 2epv_A Zinc finger protein 268 57.3 3.4 0.00012 20.8 0.8 11 20-30 10-20 (44)
125 2emj_A Zinc finger protein 28 57.3 3.3 0.00011 21.0 0.7 11 20-30 10-20 (46)
126 2e2z_A TIM15; protein import, 57.1 7.4 0.00025 25.7 2.5 40 17-58 8-50 (100)
127 2ep3_A Zinc finger protein 484 57.0 3.5 0.00012 20.8 0.8 11 20-30 10-20 (46)
128 2epc_A Zinc finger protein 32; 56.9 3.6 0.00012 20.2 0.8 11 20-30 9-19 (42)
129 2yts_A Zinc finger protein 484 56.8 3.6 0.00012 20.7 0.8 11 20-30 10-20 (46)
130 2emi_A Zinc finger protein 484 56.8 3.6 0.00012 20.8 0.8 11 20-30 10-20 (46)
131 2yth_A Zinc finger protein 224 56.6 4.1 0.00014 20.6 1.0 11 20-30 10-20 (46)
132 2k5r_A Uncharacterized protein 56.6 7.2 0.00025 25.4 2.4 44 18-63 4-72 (97)
133 2yti_A Zinc finger protein 347 56.6 3.9 0.00013 20.6 0.9 11 20-30 10-20 (46)
134 3u5c_b RP61, YS20, 40S ribosom 56.6 7.3 0.00025 24.9 2.4 38 16-58 25-65 (82)
135 2eov_A Zinc finger protein 484 56.4 4 0.00014 20.5 0.9 11 20-30 10-20 (46)
136 3j20_W 30S ribosomal protein S 56.3 12 0.00039 22.9 3.1 38 17-59 7-47 (63)
137 2eoq_A Zinc finger protein 224 56.1 4 0.00014 20.6 0.9 11 20-30 10-20 (46)
138 2emg_A Zinc finger protein 484 56.1 4.1 0.00014 20.5 1.0 11 20-30 10-20 (46)
139 2eoj_A Zinc finger protein 268 56.0 3.1 0.00011 20.8 0.4 11 20-30 10-20 (44)
140 2ep1_A Zinc finger protein 484 55.8 4 0.00014 20.5 0.9 11 20-30 10-20 (46)
141 2em3_A Zinc finger protein 28 55.7 3.8 0.00013 20.7 0.8 11 20-30 10-20 (46)
142 2eon_A ZFP-95, zinc finger pro 55.6 4.1 0.00014 20.7 0.9 11 20-30 10-20 (46)
143 2eoz_A Zinc finger protein 473 55.5 3.1 0.00011 21.1 0.4 11 20-30 10-20 (46)
144 2ytj_A Zinc finger protein 484 55.4 3.9 0.00013 20.7 0.8 11 20-30 10-20 (46)
145 2eop_A Zinc finger protein 268 55.4 4.3 0.00015 20.4 1.0 11 20-30 10-20 (46)
146 2eq2_A Zinc finger protein 347 55.4 4.1 0.00014 20.5 0.9 12 20-31 10-21 (46)
147 2yto_A Zinc finger protein 484 55.3 3.9 0.00013 20.7 0.8 11 20-30 10-20 (46)
148 2epr_A POZ-, at HOOK-, and zin 55.1 4.4 0.00015 20.8 1.0 10 20-29 38-47 (48)
149 2emh_A Zinc finger protein 484 55.0 4 0.00014 20.6 0.8 11 20-30 10-20 (46)
150 2em0_A Zinc finger protein 224 54.9 4.2 0.00015 20.5 0.9 11 20-30 10-20 (46)
151 2eoh_A Zinc finger protein 28 54.9 4.3 0.00015 20.5 0.9 11 20-30 10-20 (46)
152 2ytn_A Zinc finger protein 347 54.9 4.4 0.00015 20.4 1.0 11 20-30 10-20 (46)
153 2eq4_A Zinc finger protein 224 54.8 4.1 0.00014 20.5 0.8 11 20-30 10-20 (46)
154 2enh_A Zinc finger protein 28 54.8 4.5 0.00015 20.5 1.0 11 20-30 10-20 (46)
155 2yrj_A Zinc finger protein 473 54.7 4 0.00014 20.5 0.8 11 20-30 10-20 (46)
156 2epw_A Zinc finger protein 268 54.7 4 0.00014 20.5 0.8 11 20-30 10-20 (46)
157 2em4_A Zinc finger protein 28 54.7 4.1 0.00014 20.6 0.8 11 20-30 10-20 (46)
158 4e2x_A TCAB9; kijanose, tetron 54.6 16 0.00055 27.2 4.4 38 22-61 12-68 (416)
159 2xzm_9 RPS31E; ribosome, trans 54.6 6.2 0.00021 28.4 2.0 28 24-57 115-142 (189)
160 2emz_A ZFP-95, zinc finger pro 54.6 4.3 0.00015 20.5 0.9 11 20-30 10-20 (46)
161 2ely_A Zinc finger protein 224 54.5 4.6 0.00016 20.4 1.0 11 20-30 10-20 (46)
162 2eme_A Zinc finger protein 473 54.4 4.1 0.00014 20.5 0.8 11 20-30 10-20 (46)
163 2em9_A Zinc finger protein 224 54.3 4.1 0.00014 20.5 0.8 11 20-30 10-20 (46)
164 2ytp_A Zinc finger protein 484 54.2 4.2 0.00014 20.6 0.8 11 20-30 10-20 (46)
165 2qkd_A Zinc finger protein ZPR 54.0 17 0.00057 29.0 4.6 37 21-57 219-260 (404)
166 2ene_A Zinc finger protein 347 54.0 4.3 0.00015 20.5 0.8 11 20-30 10-20 (46)
167 3cng_A Nudix hydrolase; struct 53.9 7.3 0.00025 26.1 2.2 27 25-53 6-32 (189)
168 2eq3_A Zinc finger protein 347 53.9 3.5 0.00012 20.8 0.4 11 20-30 10-20 (46)
169 2emk_A Zinc finger protein 28 53.9 4.7 0.00016 20.4 1.0 11 20-30 10-20 (46)
170 2epu_A Zinc finger protein 32; 53.7 3.5 0.00012 20.8 0.4 11 20-30 10-20 (45)
171 1y07_A Desulfoferrodoxin (RBO) 53.7 7 0.00024 26.2 2.1 32 20-58 5-37 (128)
172 2en9_A Zinc finger protein 28 53.7 4.8 0.00016 20.3 1.0 11 20-30 10-20 (46)
173 2em2_A Zinc finger protein 28 53.7 4.3 0.00015 20.5 0.8 11 20-30 10-20 (46)
174 2epz_A Zinc finger protein 28 53.7 4.9 0.00017 20.2 1.0 11 20-30 10-20 (46)
175 2eml_A Zinc finger protein 28 53.6 4.3 0.00015 20.5 0.8 11 20-30 10-20 (46)
176 2ep2_A Zinc finger protein 484 53.4 4.4 0.00015 20.4 0.8 11 20-30 10-20 (46)
177 2jne_A Hypothetical protein YF 53.1 12 0.00041 24.8 3.1 29 23-59 33-61 (101)
178 2epx_A Zinc finger protein 28 52.7 5.1 0.00017 20.1 1.0 11 20-30 10-20 (47)
179 1x3c_A Zinc finger protein 292 52.6 15 0.00052 22.9 3.3 15 17-31 22-38 (73)
180 2ytg_A ZFP-95, zinc finger pro 52.6 4.6 0.00016 20.3 0.8 11 20-30 10-20 (46)
181 2eq0_A Zinc finger protein 347 52.6 4.7 0.00016 20.3 0.8 11 20-30 10-20 (46)
182 2em6_A Zinc finger protein 224 52.6 5 0.00017 20.3 0.9 11 20-30 10-20 (46)
183 1cyx_A CYOA; electron transpor 52.5 4.9 0.00017 29.3 1.2 52 29-81 78-132 (205)
184 2ytr_A Zinc finger protein 347 52.5 5.1 0.00017 20.1 1.0 11 20-30 10-20 (46)
185 2em7_A Zinc finger protein 224 52.4 4.6 0.00016 20.3 0.8 11 20-30 10-20 (46)
186 1znf_A 31ST zinc finger from X 52.2 4.7 0.00016 17.5 0.7 7 23-29 2-8 (27)
187 2eoo_A ZFP-95, zinc finger pro 52.1 4.7 0.00016 20.4 0.8 11 20-30 10-20 (46)
188 3uk3_C Zinc finger protein 217 52.0 4.6 0.00016 21.1 0.8 39 20-58 2-44 (57)
189 2emy_A Zinc finger protein 268 52.0 4.8 0.00016 20.3 0.8 11 20-30 10-20 (46)
190 2el4_A Zinc finger protein 268 51.9 4.6 0.00016 20.3 0.7 11 20-30 10-20 (46)
191 2en8_A Zinc finger protein 224 51.9 4.9 0.00017 20.2 0.8 11 20-30 10-20 (46)
192 2eou_A Zinc finger protein 473 51.7 5.3 0.00018 20.0 1.0 11 20-30 10-20 (44)
193 2ema_A Zinc finger protein 347 51.4 5 0.00017 20.2 0.8 11 20-30 10-20 (46)
194 2emf_A Zinc finger protein 484 51.2 5 0.00017 20.3 0.8 11 20-30 10-20 (46)
195 2ytq_A Zinc finger protein 268 51.2 5.4 0.00018 20.1 0.9 11 20-30 10-20 (46)
196 1p91_A Ribosomal RNA large sub 51.1 6 0.0002 27.4 1.4 24 23-54 3-26 (269)
197 2yu8_A Zinc finger protein 347 51.1 5 0.00017 20.2 0.8 11 20-30 10-20 (46)
198 2eom_A ZFP-95, zinc finger pro 51.0 5.8 0.0002 20.1 1.0 11 20-30 10-20 (46)
199 2eor_A Zinc finger protein 224 51.0 5.1 0.00017 20.1 0.8 11 20-30 10-20 (46)
200 1yui_A GAGA-factor; complex (D 51.0 5.1 0.00017 21.2 0.9 11 20-30 22-32 (54)
201 2drp_A Protein (tramtrack DNA- 51.0 5 0.00017 21.7 0.8 11 20-30 38-48 (66)
202 2em5_A ZFP-95, zinc finger pro 50.8 5.1 0.00018 20.2 0.8 11 20-30 10-20 (46)
203 2enc_A Zinc finger protein 224 50.6 5.1 0.00018 20.1 0.8 11 20-30 10-20 (46)
204 2ytt_A Zinc finger protein 473 50.5 5.6 0.00019 20.1 0.9 11 20-30 10-20 (46)
205 2eox_A Zinc finger protein 473 50.5 4.2 0.00014 20.3 0.4 11 20-30 10-20 (44)
206 2em8_A Zinc finger protein 224 50.4 5.2 0.00018 20.2 0.8 11 20-30 10-20 (46)
207 2elz_A Zinc finger protein 224 50.4 5.6 0.00019 20.1 0.9 11 20-30 10-20 (46)
208 2emp_A Zinc finger protein 347 50.2 5.3 0.00018 20.1 0.8 11 20-30 10-20 (46)
209 2jrp_A Putative cytoplasmic pr 50.0 19 0.00065 22.8 3.5 28 23-58 3-30 (81)
210 2yrm_A B-cell lymphoma 6 prote 49.7 6.2 0.00021 19.7 1.0 11 20-30 8-18 (43)
211 2emx_A Zinc finger protein 268 49.7 5.3 0.00018 19.9 0.7 11 20-30 8-18 (44)
212 2ytm_A Zinc finger protein 28 49.6 5.5 0.00019 20.2 0.8 11 20-30 10-20 (46)
213 2ytk_A Zinc finger protein 347 49.5 5.5 0.00019 20.0 0.8 11 20-30 10-20 (46)
214 2el6_A Zinc finger protein 268 49.5 5.3 0.00018 20.2 0.7 11 20-30 10-20 (46)
215 4ayb_P DNA-directed RNA polyme 49.4 2.2 7.4E-05 25.0 -0.9 38 21-62 2-39 (48)
216 2emm_A ZFP-95, zinc finger pro 49.3 5.5 0.00019 19.9 0.8 11 20-30 10-20 (46)
217 4gzn_C ZFP-57, zinc finger pro 49.1 5.5 0.00019 22.7 0.8 37 20-58 2-44 (60)
218 2ytd_A Zinc finger protein 473 48.8 5.7 0.0002 20.0 0.8 11 20-30 10-20 (46)
219 3mjh_B Early endosome antigen 48.5 4.8 0.00017 21.7 0.5 8 22-29 5-12 (34)
220 2ysp_A Zinc finger protein 224 48.1 4.8 0.00017 20.3 0.4 11 20-30 10-20 (46)
221 3iuf_A Zinc finger protein UBI 47.9 6.1 0.00021 20.6 0.8 10 21-30 6-15 (48)
222 2ep0_A Zinc finger protein 28 47.0 6.3 0.00022 19.8 0.8 11 20-30 10-20 (46)
223 1fft_B Ubiquinol oxidase; elec 46.9 10 0.00034 29.2 2.2 53 29-82 188-243 (315)
224 1t1h_A Gspef-atpub14, armadill 46.5 7.6 0.00026 22.4 1.2 16 17-32 3-18 (78)
225 1yop_A KTI11P; zinc finger, me 46.4 6.7 0.00023 24.9 1.0 34 22-58 23-57 (83)
226 2yso_A ZFP-95, zinc finger pro 46.3 6.7 0.00023 19.7 0.8 11 20-30 10-20 (46)
227 1x0t_A Ribonuclease P protein 46.2 28 0.00096 22.8 4.1 41 21-61 64-109 (120)
228 1bbo_A Human enhancer-binding 46.1 6.4 0.00022 20.5 0.7 10 21-30 28-37 (57)
229 2en6_A Zinc finger protein 268 45.5 5.7 0.0002 20.0 0.5 11 20-30 10-20 (46)
230 1l8d_A DNA double-strand break 45.3 6.4 0.00022 24.8 0.8 8 24-31 49-56 (112)
231 2eoe_A Zinc finger protein 347 45.0 5.8 0.0002 19.9 0.4 11 20-30 10-20 (46)
232 2en1_A Zinc finger protein 224 45.0 5.8 0.0002 19.9 0.4 11 20-30 10-20 (46)
233 1we9_A PHD finger family prote 44.7 14 0.00048 21.1 2.2 44 23-74 7-51 (64)
234 2eps_A POZ-, at HOOK-, and zin 43.6 8.2 0.00028 20.4 0.9 11 20-30 39-49 (54)
235 2l6l_A DNAJ homolog subfamily 42.9 10 0.00035 25.3 1.5 34 22-58 112-145 (155)
236 2ct1_A Transcriptional repress 42.3 8.1 0.00028 21.6 0.8 39 20-58 13-57 (77)
237 3v2d_5 50S ribosomal protein L 42.2 2.5 8.5E-05 25.3 -1.5 26 18-54 26-51 (60)
238 3iz6_X 40S ribosomal protein S 42.1 10 0.00034 24.5 1.3 28 24-56 38-65 (86)
239 1f2i_G Fusion of N-terminal 17 42.0 8.3 0.00028 21.2 0.8 9 48-56 51-59 (73)
240 1lko_A Rubrerythrin all-iron(I 41.9 8.6 0.00029 26.9 1.1 9 22-30 155-163 (191)
241 1x6e_A Zinc finger protein 24; 41.8 8.3 0.00028 21.3 0.8 40 19-58 11-54 (72)
242 1wjv_A Cell growth regulating 41.1 18 0.00062 22.9 2.4 31 22-58 10-49 (79)
243 1ltl_A DNA replication initiat 40.7 9.1 0.00031 28.1 1.1 33 21-55 133-165 (279)
244 3hpw_C Protein CCDA; alpha+bet 39.3 9 0.00031 20.7 0.7 12 65-76 14-25 (36)
245 2jz8_A Uncharacterized protein 38.8 17 0.00059 23.4 2.1 35 20-59 22-61 (87)
246 2d9h_A Zinc finger protein 692 38.7 9.8 0.00034 21.2 0.8 37 20-58 5-50 (78)
247 1zfd_A SWI5; DNA binding motif 38.6 12 0.00042 16.9 1.0 10 21-30 2-13 (32)
248 3eqt_A ATP-dependent RNA helic 38.4 16 0.00055 25.4 2.0 14 42-55 65-78 (145)
249 4dvc_A Thiol:disulfide interch 38.0 3.5 0.00012 26.6 -1.4 9 22-30 30-38 (184)
250 2zkr_2 60S ribosomal protein L 37.0 16 0.00053 24.1 1.6 26 20-54 14-39 (97)
251 1llm_C Chimera of ZIF23-GCN4; 36.7 11 0.00038 21.6 0.8 38 20-59 1-44 (88)
252 2gli_A Protein (five-finger GL 36.7 13 0.00045 23.2 1.2 13 46-58 67-81 (155)
253 2jrr_A Uncharacterized protein 36.7 18 0.00062 22.1 1.8 28 29-59 26-53 (67)
254 2eln_A Zinc finger protein 406 36.6 12 0.00041 19.4 0.9 11 20-30 7-19 (38)
255 2e72_A POGO transposable eleme 36.2 13 0.00043 21.8 1.0 11 21-31 11-21 (49)
256 3flo_B DNA polymerase alpha ca 36.2 5.9 0.0002 28.7 -0.6 36 20-56 20-59 (206)
257 1x5w_A Zinc finger protein 64, 36.0 11 0.00038 20.6 0.7 39 20-58 7-49 (70)
258 1yuz_A Nigerythrin; rubrythrin 35.6 11 0.00036 26.9 0.7 11 23-33 187-197 (202)
259 2qkd_A Zinc finger protein ZPR 35.5 29 0.00098 27.6 3.3 34 23-57 13-52 (404)
260 1sp2_A SP1F2; zinc finger, tra 35.0 14 0.00047 16.6 0.9 9 22-30 2-12 (31)
261 2k3r_A Ribonuclease P protein 34.8 96 0.0033 20.3 6.2 41 21-61 59-104 (123)
262 2kmk_A Zinc finger protein GFI 34.1 13 0.00044 20.5 0.8 8 22-29 57-64 (82)
263 1zso_A Hypothetical protein; s 34.1 19 0.00066 25.2 1.8 62 20-81 68-151 (164)
264 2lce_A B-cell lymphoma 6 prote 34.0 14 0.00048 20.4 0.9 41 18-58 13-57 (74)
265 3q87_A Putative uncharacterize 33.9 25 0.00087 23.8 2.4 16 44-59 97-112 (125)
266 2lv2_A Insulinoma-associated p 33.7 13 0.00043 22.6 0.8 9 21-29 27-35 (85)
267 3sgi_A DNA ligase; HET: DNA AM 33.3 9 0.00031 32.1 0.0 28 23-56 416-447 (615)
268 4ap4_A E3 ubiquitin ligase RNF 33.0 4.1 0.00014 25.4 -1.7 36 23-58 49-84 (133)
269 1va1_A Transcription factor SP 32.7 15 0.00051 17.5 0.8 11 20-30 6-18 (37)
270 1x6h_A Transcriptional repress 32.6 14 0.00048 20.6 0.8 11 20-30 45-55 (86)
271 2cot_A Zinc finger protein 435 32.3 41 0.0014 18.5 2.8 40 19-58 15-58 (77)
272 2c2l_A CHIP, carboxy terminus 32.2 19 0.00066 25.0 1.6 16 16-31 202-217 (281)
273 2avu_E Flagellar transcription 32.0 15 0.00051 26.6 1.0 12 19-30 151-162 (192)
274 2ebt_A Krueppel-like factor 5; 31.8 16 0.00054 21.0 0.9 10 21-30 74-83 (100)
275 2jvx_A NF-kappa-B essential mo 31.5 17 0.00058 18.7 0.9 10 21-30 2-11 (28)
276 2dlk_A Novel protein; ZF-C2H2 31.3 16 0.00054 20.1 0.9 10 21-30 67-76 (79)
277 3hb3_B Cytochrome C oxidase su 30.8 21 0.00071 27.2 1.7 51 29-80 226-278 (298)
278 2yt9_A Zinc finger-containing 30.5 18 0.0006 20.6 1.0 10 21-30 64-73 (95)
279 2epp_A POZ-, at HOOK-, and zin 30.5 17 0.00059 21.2 0.9 12 20-31 11-22 (66)
280 1bhi_A CRE-BP1, ATF-2; CRE bin 29.7 18 0.00063 17.0 0.9 10 21-30 5-16 (38)
281 1a1h_A QGSR zinc finger peptid 29.1 18 0.00061 20.3 0.8 8 22-29 62-69 (90)
282 1wge_A Hypothetical protein 26 29.1 24 0.00083 22.2 1.5 33 22-57 30-63 (83)
283 3mhs_C SAGA-associated factor 28.1 24 0.00083 23.2 1.4 13 18-30 66-78 (99)
284 2ee8_A Protein ODD-skipped-rel 28.1 33 0.0011 19.9 2.0 41 18-58 13-57 (106)
285 1v54_B Cytochrome C oxidase po 27.5 16 0.00054 26.5 0.5 46 30-76 178-225 (227)
286 2ctu_A Zinc finger protein 483 27.2 20 0.00068 19.2 0.8 38 19-59 15-52 (73)
287 2ysl_A Tripartite motif-contai 27.2 19 0.00064 20.2 0.7 17 15-31 13-29 (73)
288 2gqj_A Zinc finger protein KIA 27.2 21 0.00072 21.1 0.9 40 19-58 21-66 (98)
289 2dmi_A Teashirt homolog 3; zin 26.9 21 0.00073 21.2 0.9 11 20-30 78-88 (115)
290 3axs_A Probable N(2),N(2)-dime 26.5 52 0.0018 25.5 3.3 54 17-80 239-296 (392)
291 2ab3_A ZNF29; zinc finger prot 26.5 17 0.00058 15.7 0.3 6 51-56 9-14 (29)
292 3ga3_A Interferon-induced heli 25.8 35 0.0012 23.3 1.9 21 42-63 63-85 (133)
293 2gsm_B Cytochrome C oxidase su 25.1 24 0.00082 26.1 1.1 46 30-76 209-256 (262)
294 2ent_A Krueppel-like factor 15 25.1 24 0.00084 17.4 0.9 9 20-28 40-48 (48)
295 2k16_A Transcription initiatio 24.9 18 0.00063 21.3 0.4 32 19-59 15-46 (75)
296 3d00_A Tungsten formylmethanof 24.9 27 0.00091 24.7 1.3 19 40-58 157-175 (191)
297 2dlq_A GLI-kruppel family memb 24.7 25 0.00084 20.8 0.9 9 22-30 7-15 (124)
298 2csh_A Zinc finger protein 297 24.5 23 0.0008 20.8 0.8 8 22-29 65-72 (110)
299 3gn3_A Putative protein-disulf 24.5 8.4 0.00029 26.3 -1.4 14 68-81 81-94 (182)
300 2kr4_A Ubiquitin conjugation f 24.2 32 0.0011 20.6 1.4 15 17-31 9-23 (85)
301 3alr_A Nanos protein; zinc-fin 24.2 29 0.001 23.1 1.3 16 17-32 66-81 (106)
302 1m2o_A SEC23, protein transpor 24.1 25 0.00086 29.6 1.2 15 21-35 76-90 (768)
303 3eyy_A Putative iron uptake re 24.0 29 0.00099 22.8 1.2 19 44-62 88-106 (145)
304 2lcq_A Putative toxin VAPC6; P 24.0 37 0.0013 22.6 1.8 8 24-31 150-157 (165)
305 1k3x_A Endonuclease VIII; hydr 23.8 86 0.0029 22.8 3.9 26 24-53 236-261 (262)
306 1k82_A Formamidopyrimidine-DNA 23.7 86 0.0029 22.9 3.9 26 24-53 242-267 (268)
307 3u50_C Telomerase-associated p 23.6 29 0.001 24.3 1.3 27 22-55 42-68 (172)
308 2j6a_A Protein TRM112; transla 23.5 39 0.0013 23.3 1.9 21 43-63 106-128 (141)
309 2xzf_A Formamidopyrimidine-DNA 23.4 89 0.003 22.9 3.9 27 24-54 244-270 (271)
310 3hct_A TNF receptor-associated 23.0 24 0.00084 22.1 0.7 17 15-31 11-27 (118)
311 1wgm_A Ubiquitin conjugation f 23.0 34 0.0012 21.2 1.4 15 16-30 16-30 (98)
312 1ee8_A MUTM (FPG) protein; bet 22.7 51 0.0018 24.2 2.5 27 24-54 237-263 (266)
313 1x0g_A ISCA; [2Fe-2S], biosynt 22.6 34 0.0011 21.6 1.3 12 46-58 98-109 (112)
314 3u6p_A Formamidopyrimidine-DNA 22.5 93 0.0032 22.8 3.9 26 24-53 247-272 (273)
315 2kre_A Ubiquitin conjugation f 22.4 36 0.0012 21.2 1.4 16 16-31 23-38 (100)
316 2lkl_A Erythrocyte membrane pr 22.2 38 0.0013 21.4 1.5 23 60-82 40-66 (81)
317 3pa6_A Microcephalin; BRCT dom 21.6 45 0.0015 21.2 1.8 21 69-89 73-93 (107)
318 1wfe_A Riken cDNA 2310008M20 p 21.4 50 0.0017 20.7 1.9 29 19-58 22-52 (86)
319 3f1s_B Vitamin K-dependent pro 21.4 32 0.0011 24.4 1.1 53 28-83 227-280 (283)
320 1wff_A Riken cDNA 2810002D23 p 21.3 80 0.0027 20.0 2.9 27 22-59 25-52 (85)
321 2i5o_A DNA polymerase ETA; zin 21.1 30 0.001 18.9 0.7 10 21-30 8-17 (39)
322 2d9k_A FLN29 gene product; zin 20.8 31 0.0011 19.8 0.8 46 17-67 12-62 (75)
323 2aze_B Transcription factor E2 20.7 29 0.00098 22.6 0.7 16 55-70 86-101 (106)
324 2nut_A Protein transport prote 20.7 23 0.0008 29.8 0.3 14 21-34 85-98 (769)
325 2wbt_A B-129; zinc finger; 2.7 20.5 34 0.0012 20.7 1.0 10 21-30 99-108 (129)
326 1wjp_A Zinc finger protein 295 20.5 35 0.0012 20.0 1.0 40 19-58 13-54 (107)
327 2k5c_A Uncharacterized protein 20.3 59 0.002 21.1 2.1 26 45-70 50-75 (95)
328 1ncs_A Peptide M30F, transcrip 20.2 35 0.0012 17.2 0.8 11 20-30 16-28 (47)
329 2kdx_A HYPA, hydrogenase/ureas 20.2 32 0.0011 22.0 0.8 30 18-55 69-99 (119)
330 3gmf_A Protein-disulfide isome 20.2 12 0.0004 26.1 -1.4 14 68-81 77-90 (205)
No 1
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=100.00 E-value=2.6e-45 Score=242.00 Aligned_cols=82 Identities=45% Similarity=0.916 Sum_probs=75.0
Q ss_pred CCCccCCCCCCCCC-CCCCCccccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEeecCCCCcchhhhhhHHHHHHhh
Q 034538 2 GKRKSRAKPPPKKR-VDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERV 80 (92)
Q Consensus 2 GkRK~k~k~~~kk~-~~kl~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~epVDVYs~WiD~~~~~ 80 (92)
|||||++||++|++ .++|||+|+||||||++||+|+||++.++|+|+|++||++|+++||+|+|||||||+|||+|+++
T Consensus 2 ~rRKs~~k~~~k~k~~~~L~t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~epiDVYs~WiDac~~~ 81 (85)
T 1wii_A 2 SSGSSGRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACESG 81 (85)
T ss_dssp CCCCCCCCCCCCCCCCCCCSSCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEECCSSCCTTHHHHHHHHHHHHC
T ss_pred CCccccCCCCCCcccCCCCCCeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEeccCccCcchhhHHHHHHHHHHH
Confidence 45666667776665 48999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCc
Q 034538 81 NNL 83 (92)
Q Consensus 81 n~~ 83 (92)
|++
T Consensus 82 ~~~ 84 (85)
T 1wii_A 82 PSS 84 (85)
T ss_dssp CCC
T ss_pred hhc
Confidence 974
No 2
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=96.02 E-value=0.0028 Score=40.80 Aligned_cols=45 Identities=20% Similarity=0.342 Sum_probs=31.8
Q ss_pred CccccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEeecCCCCcchhhh
Q 034538 20 DTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIY 70 (92)
Q Consensus 20 ~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~epVDVY 70 (92)
...|.|||||.+. + .....|+..|..||..|.--.-.++.|.-+.
T Consensus 25 ~~~y~Cp~CG~~~-v-----~r~atGiW~C~~Cg~~~aggay~~~t~~~~~ 69 (83)
T 1vq8_Z 25 NEDHACPNCGEDR-V-----DRQGTGIWQCSYCDYKFTGGSYKPETPGGKT 69 (83)
T ss_dssp HSCEECSSSCCEE-E-----EEEETTEEEETTTCCEEECCSSSSSCHHHHH
T ss_pred cccCcCCCCCCcc-e-----eccCCCeEECCCCCCEecCCEecccchHHHH
Confidence 4689999999731 1 1234689999999999987655555665544
No 3
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=95.86 E-value=0.0045 Score=35.40 Aligned_cols=33 Identities=27% Similarity=0.540 Sum_probs=24.4
Q ss_pred ccccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEe
Q 034538 21 TVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFST 58 (92)
Q Consensus 21 ~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 58 (92)
..+.||.|+.. .+..|.. .|.+.|..||+.|..
T Consensus 4 ~~~~CP~C~~~---~l~~d~~--~gelvC~~CG~v~~e 36 (50)
T 1pft_A 4 KQKVCPACESA---ELIYDPE--RGEIVCAKCGYVIEE 36 (50)
T ss_dssp SCCSCTTTSCC---CEEEETT--TTEEEESSSCCBCCC
T ss_pred ccEeCcCCCCc---ceEEcCC--CCeEECcccCCcccc
Confidence 45789999974 2445544 467999999998865
No 4
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=95.67 E-value=0.0052 Score=41.39 Aligned_cols=58 Identities=17% Similarity=0.438 Sum_probs=37.9
Q ss_pred ccccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEeecCCCCcchhhh-hhHHHHHHhhcCcc
Q 034538 21 TVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIY-SEWIDECERVNNLE 84 (92)
Q Consensus 21 ~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~epVDVY-s~WiD~~~~~n~~~ 84 (92)
..+.|||||.. .|+- ..+|+-.|+.|+..|.--.-.++.|.-+. ..=|..+.|..+++
T Consensus 35 aky~CpfCgk~---~vKR---~a~GIW~C~kCg~~~AGGAy~~~T~~a~tv~~~irrl~e~~~~~ 93 (103)
T 4a17_Y 35 AKYGCPFCGKV---AVKR---AAVGIWKCKPCKKIIAGGAWELTTPPAVTAKTTMNRLKKLQEEQ 93 (103)
T ss_dssp SCEECTTTCCE---EEEE---EETTEEEETTTTEEEECCSSCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCc---eeee---cCcceEEcCCCCCEEeCCcccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 57899999973 3333 45789999999999987555555554433 22355555555443
No 5
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=95.27 E-value=0.008 Score=39.68 Aligned_cols=42 Identities=14% Similarity=0.339 Sum_probs=30.5
Q ss_pred ccccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEeecCCCCcchh
Q 034538 21 TVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPID 68 (92)
Q Consensus 21 ~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~epVD 68 (92)
..+.|||||... |.+ ..+|+-.|+.|+..|.--.-.++.|.-
T Consensus 35 ~ky~CpfCgk~~-----vkR-~a~GIW~C~~Cg~~~AGGAy~~~T~~~ 76 (92)
T 3iz5_m 35 SKYFCEFCGKFA-----VKR-KAVGIWGCKDCGKVKAGGAYTMNTASA 76 (92)
T ss_dssp SCBCCTTTCSSC-----BEE-EETTEEECSSSCCEEECCSSSSCCHHH
T ss_pred ccccCcccCCCe-----eEe-cCcceEEcCCCCCEEeCCcccCCCcHH
Confidence 568999999853 322 457899999999999875555555543
No 6
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.19 E-value=0.0081 Score=38.96 Aligned_cols=40 Identities=20% Similarity=0.446 Sum_probs=28.7
Q ss_pred ccccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEeecCCCCcc
Q 034538 21 TVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEP 66 (92)
Q Consensus 21 ~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~ep 66 (92)
..+.||||+... |+- ..+|+-.|+.|+..|.--.-.++.|
T Consensus 34 ~ky~CpfCGk~~---vkR---~a~GIW~C~kCg~~~AGGAy~~~T~ 73 (83)
T 3j21_i 34 QKHTCPVCGRKA---VKR---ISTGIWQCQKCGATFAGGAYLPVTP 73 (83)
T ss_dssp SCBCCSSSCSSC---EEE---EETTEEEETTTCCEEECCSSSSSCH
T ss_pred cccCCCCCCCce---eEe---cCcCeEEcCCCCCEEeCCccccCcc
Confidence 478999999853 322 4578999999999987654444444
No 7
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=95.07 E-value=0.0088 Score=39.49 Aligned_cols=41 Identities=17% Similarity=0.518 Sum_probs=29.8
Q ss_pred ccccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEeecCCCCcch
Q 034538 21 TVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPI 67 (92)
Q Consensus 21 ~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~epV 67 (92)
..+.||||+... |.+ ..+|+-.|+.|+..|.--.-.++.|.
T Consensus 35 ~ky~CpfCgk~~-----vkR-~a~GIW~C~~C~~~~AGGAy~~~T~~ 75 (92)
T 3izc_m 35 ARYDCSFCGKKT-----VKR-GAAGIWTCSCCKKTVAGGAYTVSTAA 75 (92)
T ss_dssp SCCCCSSSCSSC-----CEE-EETTEEECTTTCCEEECCSSSSCCHH
T ss_pred cCCcCCCCCCce-----eee-cccceEEcCCCCCEEeCCcccCCCcH
Confidence 578999999753 222 45789999999999987555555544
No 8
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=95.06 E-value=0.024 Score=35.85 Aligned_cols=36 Identities=17% Similarity=0.452 Sum_probs=26.7
Q ss_pred CCCccccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEee
Q 034538 18 KLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTT 59 (92)
Q Consensus 18 kl~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~ 59 (92)
.....+.||||+.. +| +- ..+|+-.|+.|+..|.--
T Consensus 23 ~q~~ky~C~fCgk~-~v--kR---~a~GIW~C~~C~~~~AGG 58 (73)
T 1ffk_W 23 KHKKKYKCPVCGFP-KL--KR---ASTSIWVCGHCGYKIAGG 58 (73)
T ss_pred hcccCccCCCCCCc-ee--EE---EEeEEEECCCCCcEEECC
Confidence 44678999999963 22 22 347999999999987654
No 9
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=94.89 E-value=0.0067 Score=38.40 Aligned_cols=40 Identities=18% Similarity=0.537 Sum_probs=28.6
Q ss_pred ccccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEeecCCCCcc
Q 034538 21 TVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEP 66 (92)
Q Consensus 21 ~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~ep 66 (92)
..+.||||+... |.+ ..+|+-.|+.|+..|.--.-.++.|
T Consensus 25 ~ky~C~fCgk~~-----vkR-~a~GIW~C~~C~~~~AGGAy~~~T~ 64 (72)
T 3jyw_9 25 ARYDCSFCGKKT-----VKR-GAAGIWTCSCCKKTVAGGAYTVSTA 64 (72)
T ss_dssp SCBCCSSCCSSC-----BSB-CSSSCBCCSSSCCCCCCSSSSSCCH
T ss_pred cCccCCCCCCce-----eEe-cCCCeEECCCCCCEEeCCccccCCc
Confidence 578999999753 433 5689999999999886544333333
No 10
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=94.76 E-value=0.01 Score=35.52 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=26.1
Q ss_pred CCCccccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEe
Q 034538 18 KLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFST 58 (92)
Q Consensus 18 kl~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 58 (92)
+|...-.||.|+..+ +..| ...|.+.|..||+.++.
T Consensus 7 ~ll~~~~Cp~C~~~~---lv~D--~~~ge~vC~~CGlVl~e 42 (58)
T 1dl6_A 7 DALPRVTCPNHPDAI---LVED--YRAGDMICPECGLVVGD 42 (58)
T ss_dssp CCCSCCSBTTBSSSC---CEEC--SSSCCEECTTTCCEECC
T ss_pred hccccccCcCCCCCc---eeEe--CCCCeEEeCCCCCEEec
Confidence 455566899999865 3334 34578999999998765
No 11
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=94.43 E-value=0.047 Score=29.86 Aligned_cols=31 Identities=13% Similarity=0.259 Sum_probs=24.3
Q ss_pred cCCCCCCCCeEEEEeecCCceEEEEcCccCCeeE
Q 034538 24 SCPFCNHGTSVECRIDMKNLIGEAICNICQESFS 57 (92)
Q Consensus 24 ~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~ 57 (92)
.||.|+.+.+.-++ +++.-.+.|..||....
T Consensus 2 lC~~C~~peT~l~~---~~~~~~l~C~aCG~~~~ 32 (36)
T 1k81_A 2 ICRECGKPDTKIIK---EGRVHLLKCMACGAIRP 32 (36)
T ss_dssp CCSSSCSCEEEEEE---ETTEEEEEEETTTEEEE
T ss_pred CCcCCCCCCcEEEE---eCCcEEEEhhcCCCccc
Confidence 49999998765444 56889999999998654
No 12
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=93.73 E-value=0.04 Score=37.68 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=31.9
Q ss_pred CccccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEeecCCCCcchhhh
Q 034538 20 DTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIY 70 (92)
Q Consensus 20 ~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~epVDVY 70 (92)
...+.|||||.. .++- ..+|+-.|+.|+..|.--.-.++.|.-+.
T Consensus 58 ~akytCPfCGk~---~vKR---~avGIW~C~~Cgk~fAGGAy~~~T~~~~t 102 (116)
T 3cc2_Z 58 NEDHACPNCGED---RVDR---QGTGIWQCSYCDYKFTGGSYKPETPGGKT 102 (116)
T ss_dssp HSCEECSSSCCE---EEEE---EETTEEEETTTCCEEECCSSSSSCHHHHH
T ss_pred ccCCcCCCCCCc---eeEe---cCceeEECCCCCCEEECCCcccccchhhh
Confidence 467899999962 3332 23589999999999987655555665544
No 13
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=93.59 E-value=0.15 Score=29.70 Aligned_cols=38 Identities=18% Similarity=0.394 Sum_probs=27.5
Q ss_pred ccccCCCCCCCCeEEEEeec----CCceEEEEcCccCCeeEe
Q 034538 21 TVFSCPFCNHGTSVECRIDM----KNLIGEAICNICQESFST 58 (92)
Q Consensus 21 ~~F~CPfC~~~~sV~vkidk----~~~~g~l~C~~Cg~~~~~ 58 (92)
+.+.||.|||...+--.+.- ..+.....|..||-.+..
T Consensus 14 ~~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 14 TKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp EECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred eEeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 36899999997766555532 235678899999987653
No 14
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=93.18 E-value=0.1 Score=32.01 Aligned_cols=35 Identities=26% Similarity=0.597 Sum_probs=23.0
Q ss_pred cCCCCCCCC----eEEEEeecCC------ceEEEEcCccCCeeEe
Q 034538 24 SCPFCNHGT----SVECRIDMKN------LIGEAICNICQESFST 58 (92)
Q Consensus 24 ~CPfC~~~~----sV~vkidk~~------~~g~l~C~~Cg~~~~~ 58 (92)
.||+|+... ...+.++.+. ++--..|..||+.|-+
T Consensus 4 ~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~~~ 48 (78)
T 3ga8_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMN 48 (78)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEECC
T ss_pred ECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEEEC
Confidence 699999762 3334454443 3345689999997754
No 15
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=92.96 E-value=0.25 Score=28.61 Aligned_cols=37 Identities=16% Similarity=0.547 Sum_probs=28.1
Q ss_pred ccccCCCCCCCCeEEEEeecC----CceEEEEcCccCCeeE
Q 034538 21 TVFSCPFCNHGTSVECRIDMK----NLIGEAICNICQESFS 57 (92)
Q Consensus 21 ~~F~CPfC~~~~sV~vkidk~----~~~g~l~C~~Cg~~~~ 57 (92)
+.+.||.|||...+-..+... .+.-...|..||-++.
T Consensus 8 ~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 8 DLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred CccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 468999999999887766432 3556788999998764
No 16
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=92.24 E-value=0.21 Score=33.41 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=26.2
Q ss_pred cCCCCCCCCeEEEEeecCCceEEEEcCccCCeeE
Q 034538 24 SCPFCNHGTSVECRIDMKNLIGEAICNICQESFS 57 (92)
Q Consensus 24 ~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~ 57 (92)
=||.||+ -+.++-++..+...+.|+.||-.+.
T Consensus 6 FCp~Cgn--lL~~~~~~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 6 FCRDCNN--MLYPREDKENNRLLFECRTCSYVEE 37 (122)
T ss_dssp BCSSSCC--BCEEEEETTTTEEEEECSSSSCEEE
T ss_pred cccccCc--cCcccccCcCCCCEEECCcCCCeee
Confidence 3999996 5777777777889999999997664
No 17
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=90.53 E-value=0.12 Score=32.10 Aligned_cols=41 Identities=22% Similarity=0.553 Sum_probs=29.8
Q ss_pred CCCCccccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEee--cCCC
Q 034538 17 DKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTT--ITAL 63 (92)
Q Consensus 17 ~kl~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~--i~~L 63 (92)
+.|-....||.|..+ +... .. -|.+.|..||..|-.. |+-|
T Consensus 3 ~~LL~iL~CP~ck~~--L~~~--~~--~~~LiC~~cg~~YPI~dGIPvm 45 (70)
T 2js4_A 3 SRLLDILVCPVCKGR--LEFQ--RA--QAELVCNADRLAFPVRDGVPIM 45 (70)
T ss_dssp CCCCCCCBCTTTCCB--EEEE--TT--TTEEEETTTTEEEEEETTEECC
T ss_pred hHHhhheECCCCCCc--CEEe--CC--CCEEEcCCCCceecCCCCeeee
Confidence 357778899999973 4433 22 3789999999999763 5554
No 18
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=90.32 E-value=0.45 Score=36.58 Aligned_cols=58 Identities=16% Similarity=0.305 Sum_probs=36.6
Q ss_pred cccCCCCCCCCeEEEE-eec------CCceEEEEcCccCCeeEeecCCCCcch-----hhhhhHHHHHHh
Q 034538 22 VFSCPFCNHGTSVECR-IDM------KNLIGEAICNICQESFSTTITALTEPI-----DIYSEWIDECER 79 (92)
Q Consensus 22 ~F~CPfC~~~~sV~vk-idk------~~~~g~l~C~~Cg~~~~~~i~~L~epV-----DVYs~WiD~~~~ 79 (92)
...||+||+.+.++.- ++. ...+-.-.|..||.+.-+--...+..+ |+-+--+|..-+
T Consensus 222 R~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~YlK~~~~~~d~~~dp~adDlatL~LDl~a~ 291 (309)
T 2fiy_A 222 RIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLKQFYLEFDRHADALADDLASLALDMRLA 291 (309)
T ss_dssp TTSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEEEEEETTTCTTCCHHHHHHTTHHHHHHHH
T ss_pred CcCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccchHhhhhhccCCCCCcchhHHHHHHHHHHHH
Confidence 4689999998877665 443 266778899999987655322223333 344445555443
No 19
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=89.71 E-value=0.2 Score=30.85 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=29.3
Q ss_pred CCCCccccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEee--cCCC
Q 034538 17 DKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTT--ITAL 63 (92)
Q Consensus 17 ~kl~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~--i~~L 63 (92)
+.|-....||.|..+ +... .. -+.+.|..||..|-.. |+-|
T Consensus 3 ~~LL~iL~CP~ck~~--L~~~--~~--~~~LiC~~cg~~YPI~dGIPvm 45 (68)
T 2jr6_A 3 KKFLDILVCPVTKGR--LEYH--QD--KQELWSRQAKLAYPIKDGIPYM 45 (68)
T ss_dssp CSSSCCCBCSSSCCB--CEEE--TT--TTEEEETTTTEEEEEETTEECC
T ss_pred hHHhhheECCCCCCc--CeEe--CC--CCEEEcCCCCcEecCCCCeeee
Confidence 356678899999973 4443 22 3789999999999763 5544
No 20
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=89.20 E-value=0.53 Score=30.32 Aligned_cols=35 Identities=29% Similarity=0.649 Sum_probs=20.9
Q ss_pred cCCCCCCCCeE----EEEeecCC------ceEEEEcCccCCeeEe
Q 034538 24 SCPFCNHGTSV----ECRIDMKN------LIGEAICNICQESFST 58 (92)
Q Consensus 24 ~CPfC~~~~sV----~vkidk~~------~~g~l~C~~Cg~~~~~ 58 (92)
.||+|+.+..+ ...++-+. ++-...|..||+.+-.
T Consensus 4 ~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~d 48 (133)
T 3o9x_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMN 48 (133)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEECC
T ss_pred CCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEeec
Confidence 69999986432 22222232 2335679999987643
No 21
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=88.98 E-value=0.34 Score=28.09 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=18.4
Q ss_pred cCCCCCCCCeEEEEeecCCceEEEEcCccCCee
Q 034538 24 SCPFCNHGTSVECRIDMKNLIGEAICNICQESF 56 (92)
Q Consensus 24 ~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~ 56 (92)
-||.||+. .+... . .....|+.||.++
T Consensus 21 ~CP~CG~~-~fm~~--~---~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 21 FCPRCGPG-VFMAD--H---GDRWACGKCGYTE 47 (50)
T ss_dssp ECSSSCSS-CEEEE--C---SSEEECSSSCCEE
T ss_pred cCCCCCCc-eEEec--C---CCeEECCCCCCEE
Confidence 49999984 22221 1 2578999999865
No 22
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=88.92 E-value=0.47 Score=36.47 Aligned_cols=39 Identities=13% Similarity=0.302 Sum_probs=27.5
Q ss_pred CccccCCCCCCCCeEEEEee--cCCceEEEEcCccCCeeEe
Q 034538 20 DTVFSCPFCNHGTSVECRID--MKNLIGEAICNICQESFST 58 (92)
Q Consensus 20 ~~~F~CPfC~~~~sV~vkid--k~~~~g~l~C~~Cg~~~~~ 58 (92)
...=.||.||..-++++-.. ...|.-.++|..||..+.+
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~ 220 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY 220 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEee
Confidence 55668999999876664332 2466678999999987654
No 23
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=88.61 E-value=0.17 Score=31.22 Aligned_cols=40 Identities=20% Similarity=0.378 Sum_probs=29.0
Q ss_pred CCCccccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEee--cCCC
Q 034538 18 KLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTT--ITAL 63 (92)
Q Consensus 18 kl~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~--i~~L 63 (92)
.|-....||.|..+ +.. +. .-+.+.|..||..|... |+-|
T Consensus 4 ~LLeiL~CP~ck~~--L~~--~~--~~~~LiC~~cg~~YPI~dGIPvm 45 (69)
T 2pk7_A 4 KLLDILACPICKGP--LKL--SA--DKTELISKGAGLAYPIRDGIPVM 45 (69)
T ss_dssp CGGGTCCCTTTCCC--CEE--CT--TSSEEEETTTTEEEEEETTEECC
T ss_pred HHHhheeCCCCCCc--CeE--eC--CCCEEEcCCCCcEecCcCCeeee
Confidence 56678899999974 433 22 34789999999999863 5554
No 24
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=88.40 E-value=0.88 Score=30.29 Aligned_cols=42 Identities=19% Similarity=0.433 Sum_probs=30.4
Q ss_pred CCC-ccccCCCCCCCCeEEEEeecC----CceEEEEcCccCCeeEee
Q 034538 18 KLD-TVFSCPFCNHGTSVECRIDMK----NLIGEAICNICQESFSTT 59 (92)
Q Consensus 18 kl~-~~F~CPfC~~~~sV~vkidk~----~~~g~l~C~~Cg~~~~~~ 59 (92)
.+| +.+.||.|||...+-..+... .+.-...|..||-.+..+
T Consensus 67 t~p~t~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~n 113 (122)
T 1twf_I 67 TLPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSD 113 (122)
T ss_dssp TSCCCCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECC
T ss_pred cccccCCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccC
Confidence 444 358999999998877766321 355578899999887653
No 25
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=87.91 E-value=0.34 Score=28.61 Aligned_cols=29 Identities=21% Similarity=0.391 Sum_probs=20.6
Q ss_pred cccCCCCCCCCeEEEEeecCCceEEEEcCccCCee
Q 034538 22 VFSCPFCNHGTSVECRIDMKNLIGEAICNICQESF 56 (92)
Q Consensus 22 ~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~ 56 (92)
...||.||+.--++ .......|+.||.++
T Consensus 18 ~~fCPkCG~~~~ma------~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGPGVFLA------EHADRYSCGRCGYTE 46 (55)
T ss_dssp SCCCTTTTTTCCCE------ECSSEEECTTTCCCE
T ss_pred cccCcCCCCceeEe------ccCCEEECCCCCCEE
Confidence 67899999843222 112489999999875
No 26
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=87.82 E-value=0.17 Score=31.21 Aligned_cols=41 Identities=22% Similarity=0.440 Sum_probs=29.4
Q ss_pred CCCCccccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEee--cCCC
Q 034538 17 DKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTT--ITAL 63 (92)
Q Consensus 17 ~kl~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~--i~~L 63 (92)
+.|-....||.|..+ +.... . -+.+.|..||..|-.. |+-|
T Consensus 3 ~~LL~iL~CP~ck~~--L~~~~--~--~~~LiC~~cg~~YPI~dGIPvm 45 (68)
T 2hf1_A 3 AKFLEILVCPLCKGP--LVFDK--S--KDELICKGDRLAFPIKDGIPMM 45 (68)
T ss_dssp CCCEEECBCTTTCCB--CEEET--T--TTEEEETTTTEEEEEETTEECC
T ss_pred hHHhhheECCCCCCc--CeEeC--C--CCEEEcCCCCcEecCCCCeeee
Confidence 356678899999973 44432 2 4789999999999763 5554
No 27
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=87.79 E-value=0.24 Score=32.69 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=23.9
Q ss_pred CCCCCCCCeEEEEeecCCceEEEEcCccCCee
Q 034538 25 CPFCNHGTSVECRIDMKNLIGEAICNICQESF 56 (92)
Q Consensus 25 CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~ 56 (92)
||.||+ -+.++.+...+.-.+.|+.||-.+
T Consensus 7 Cp~Cgn--~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 7 CIECNN--MLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CSSSCC--CCEECCCTTTCCCCEECSSSCCEE
T ss_pred CcCCCC--EeeEcccCCCCeeEEECCCCCCeE
Confidence 999997 477777665667789999999755
No 28
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=87.70 E-value=0.21 Score=30.40 Aligned_cols=44 Identities=18% Similarity=0.310 Sum_probs=34.2
Q ss_pred cccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEeecCCCCcchhhhhhHHHHH
Q 034538 22 VFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDEC 77 (92)
Q Consensus 22 ~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~epVDVYs~WiD~~ 77 (92)
.-.||.|+. -+. .-.|..||......-++-+.|-|-|++.-=++
T Consensus 6 mr~C~~Cgv---YTL---------k~~CP~CG~~T~~~hParfSp~Dky~~yR~~~ 49 (60)
T 2apo_B 6 MKKCPKCGL---YTL---------KEICPKCGEKTVIPKPPKFSLEDRWGKYRRML 49 (60)
T ss_dssp CEECTTTCC---EES---------SSBCSSSCSBCBCCCCCCCCTTCTTHHHHHHH
T ss_pred ceeCCCCCC---Eec---------cccCcCCCCcCCCCCCCCCCCCcchHHHHHHH
Confidence 346999975 222 12599999999999999999999999876444
No 29
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=87.20 E-value=0.64 Score=35.40 Aligned_cols=38 Identities=16% Similarity=0.427 Sum_probs=27.6
Q ss_pred ccccCCCCCCCCeEEEEeecC----CceEEEEcCccCCeeEe
Q 034538 21 TVFSCPFCNHGTSVECRIDMK----NLIGEAICNICQESFST 58 (92)
Q Consensus 21 ~~F~CPfC~~~~sV~vkidk~----~~~g~l~C~~Cg~~~~~ 58 (92)
+.|.||.|||...+--.+... .+.-...|..||-++.+
T Consensus 267 ~~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~f 308 (309)
T 1pqv_S 267 DRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWKF 308 (309)
T ss_pred ccccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCceec
Confidence 479999999988766555321 34557899999987653
No 30
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=87.17 E-value=0.25 Score=35.61 Aligned_cols=31 Identities=13% Similarity=0.321 Sum_probs=22.5
Q ss_pred CccccCCCCCCCCeEEEEeecCCceEEEEcCccCCe
Q 034538 20 DTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQES 55 (92)
Q Consensus 20 ~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~ 55 (92)
...+.||.||..+...+- . .+ ...|..||..
T Consensus 12 ~~~~~CP~Cg~~d~~~~~--~-dg--~~~C~~Cg~~ 42 (255)
T 1nui_A 12 LYHIPCDNCGSSDGNSLF--S-DG--HTFCYVCEKW 42 (255)
T ss_dssp EEEECCSSSCCSSCEEEE--T-TS--CEEETTTCCE
T ss_pred ecCCcCCCCCCCCCceEe--C-CC--CeecccCCCc
Confidence 346899999986665544 2 23 5899999975
No 31
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.91 E-value=0.97 Score=31.98 Aligned_cols=36 Identities=17% Similarity=0.263 Sum_probs=28.1
Q ss_pred cccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEe
Q 034538 22 VFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFST 58 (92)
Q Consensus 22 ~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 58 (92)
.=.||.|+.+.+.-+ ++++..+-.+.|..||....-
T Consensus 103 YVlC~~C~sPdT~L~-~~~~~r~~~l~C~ACGa~~~V 138 (157)
T 2e9h_A 103 FVLCPECENPETDLH-VNPKKQTIGNSCKACGYRGML 138 (157)
T ss_dssp TTSCTTTCCSCCEEE-EETTTTEEEEECSSSCCEEEC
T ss_pred eEECCCCCCCccEEE-EecCCCEEEEEccCCCCCCcc
Confidence 457999999886544 456788999999999987544
No 32
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=86.84 E-value=0.59 Score=30.77 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=27.1
Q ss_pred CCCC-ccccCCCCCCCCeEEEEeec----CCceEEEEcCccCCee
Q 034538 17 DKLD-TVFSCPFCNHGTSVECRIDM----KNLIGEAICNICQESF 56 (92)
Q Consensus 17 ~kl~-~~F~CPfC~~~~sV~vkidk----~~~~g~l~C~~Cg~~~ 56 (92)
+.|| +.+.||.|||..++--.+.. ..+.-...|..||-++
T Consensus 66 ~tlp~~~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w 110 (113)
T 3h0g_I 66 PTLPRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAF 110 (113)
T ss_dssp SSSCBCCSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCC
T ss_pred ccCCCcccCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEE
Confidence 3455 45999999998876655432 1244567899999765
No 33
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=86.34 E-value=0.37 Score=29.36 Aligned_cols=45 Identities=22% Similarity=0.515 Sum_probs=34.2
Q ss_pred cccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEeecCCCCcchhhhhhHHHHHH
Q 034538 22 VFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECE 78 (92)
Q Consensus 22 ~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~epVDVYs~WiD~~~ 78 (92)
.-.||.||. -+ + + -.|.+||......-++-+.|-|-|++.-=++.
T Consensus 5 mr~C~~Cg~-YT----L-k------~~CP~CG~~t~~ahParfSP~Dky~~yR~~lK 49 (60)
T 2aus_D 5 IRKCPKCGR-YT----L-K------ETCPVCGEKTKVAHPPRFSPEDPYGEYRRRLK 49 (60)
T ss_dssp CEECTTTCC-EE----S-S------SBCTTTCSBCEESSCCCCCSCCTTHHHHHHHH
T ss_pred ceECCCCCC-EE----c-c------ccCcCCCCccCCCCCCCCCCCCchHHHHHHHH
Confidence 346999975 11 1 1 15999999999999999999999998765443
No 34
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=85.76 E-value=0.44 Score=36.39 Aligned_cols=60 Identities=20% Similarity=0.448 Sum_probs=39.0
Q ss_pred cccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEee--cCCCCcch--hhhhhHHHHHHhhcCc
Q 034538 22 VFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTT--ITALTEPI--DIYSEWIDECERVNNL 83 (92)
Q Consensus 22 ~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~--i~~L~epV--DVYs~WiD~~~~~n~~ 83 (92)
.+-||.||+.. + -.+.-..-+|--.|..|++.||-+ =..|+.-| -.|+--|+.+...+.+
T Consensus 34 n~yCPnCG~~~-l-~~f~nN~PVaDF~C~~C~EeyELKSk~~~~~~~I~dGAY~Tmi~Ri~s~~NP 97 (257)
T 4esj_A 34 QSYCPNCGNNP-L-NHFENNRPVADFYCNHCSEEFELKSKKGNFSSTINDGAYATMMKRVQADNNP 97 (257)
T ss_dssp HCCCTTTCCSS-C-EEC----CCCEEECTTTCCEEEEEEEESSCCSEEEEEEHHHHHHHHHTTCCC
T ss_pred CCcCCCCCChh-h-hhccCCCcccccccCCcchhheeccccCccCccccCchHHHHHHHHhccCCC
Confidence 46799999843 2 245556788999999999999963 23344333 2688777777766644
No 35
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=85.14 E-value=0.82 Score=26.96 Aligned_cols=39 Identities=28% Similarity=0.584 Sum_probs=28.3
Q ss_pred CCCCccccCCCCCCCCeEEEEeecCCceEEEEcC--ccCCeeEee--cCCC
Q 034538 17 DKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICN--ICQESFSTT--ITAL 63 (92)
Q Consensus 17 ~kl~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~--~Cg~~~~~~--i~~L 63 (92)
+.|-....||.|..+ ++. +. +.+.|. .||..|-.. |+-|
T Consensus 5 ~~lL~iL~CP~c~~~--L~~--~~----~~L~C~~~~c~~~YPI~dGIPvl 47 (56)
T 2kpi_A 5 AGLLEILACPACHAP--LEE--RD----AELICTGQDCGLAYPVRDGIPVL 47 (56)
T ss_dssp CSCTTSCCCSSSCSC--EEE--ET----TEEEECSSSCCCEEEEETTEECC
T ss_pred HHHHhheeCCCCCCc--cee--cC----CEEEcCCcCCCcEEeeECCEeee
Confidence 356678899999974 333 22 889999 999999763 5443
No 36
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=83.81 E-value=1.3 Score=27.53 Aligned_cols=53 Identities=13% Similarity=0.327 Sum_probs=34.4
Q ss_pred cccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEeecCCCCcchhhhhhHHHHHHhhcC
Q 034538 22 VFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNN 82 (92)
Q Consensus 22 ~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~epVDVYs~WiD~~~~~n~ 82 (92)
+|-|| |+.- .+. +.+.....|. ||..++..=-.+.-.+|=+.+=.++....+.
T Consensus 4 vv~C~-C~~~---~~~---~~~~kT~~C~-CG~~~~~~k~rif~~~~d~~eA~e~~~~lqa 56 (71)
T 1gh9_A 4 IFRCD-CGRA---LYS---REGAKTRKCV-CGRTVNVKDRRIFGRADDFEEASELVRKLQE 56 (71)
T ss_dssp EEEET-TSCC---EEE---ETTCSEEEET-TTEEEECCSSSCBSCCSSHHHHHHHHHHHSS
T ss_pred EEECC-CCCE---EEE---cCCCcEEECC-CCCeeeeceEEEEEecCCHHHHHHHHHHHHh
Confidence 68999 9973 222 2355688997 9999998533333337766666655555543
No 37
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=83.76 E-value=0.3 Score=30.04 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=28.4
Q ss_pred CCCccccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEee--cCCC
Q 034538 18 KLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTT--ITAL 63 (92)
Q Consensus 18 kl~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~--i~~L 63 (92)
.|-....||.|..+ +.. +. .-|.+.|..||..|-.. |+-|
T Consensus 6 ~LLeiL~CP~ck~~--L~~--~~--~~g~LvC~~c~~~YPI~dGIPvm 47 (67)
T 2jny_A 6 QLLEVLACPKDKGP--LRY--LE--SEQLLVNERLNLAYRIDDGIPVL 47 (67)
T ss_dssp GGTCCCBCTTTCCB--CEE--ET--TTTEEEETTTTEEEEEETTEECC
T ss_pred HHHHHhCCCCCCCc--CeE--eC--CCCEEEcCCCCccccCCCCEeee
Confidence 46667899999973 333 22 24789999999999763 5544
No 38
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=83.46 E-value=0.64 Score=35.73 Aligned_cols=50 Identities=26% Similarity=0.536 Sum_probs=30.5
Q ss_pred CCCCCccccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEeecCCCCcchhhhhhHH
Q 034538 16 VDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWI 74 (92)
Q Consensus 16 ~~kl~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~epVDVYs~Wi 74 (92)
.+-|.-.-.||.|+... -.+..|. .-|.+.|..||+-.+. ..||.=++|-
T Consensus 15 ~~~l~~~~~Cp~C~~~~-~~lv~D~--~~G~~vC~~CGlVl~e------~~iD~g~EWR 64 (345)
T 4bbr_M 15 GPNLNIVLTCPECKVYP-PKIVERF--SEGDVVCALCGLVLSD------KLVDTRSEWR 64 (345)
T ss_dssp -------CCCSSCCCSS-CCEEEEG--GGTEEEETTTCBEEES------CCBCHHHHHT
T ss_pred CcccccCCcCCCCCCCC-CceeEEC--CCCcEEeCCCCCCccC------cccccCcccc
Confidence 45666666899999721 1233343 4589999999987654 4578888886
No 39
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=82.65 E-value=1.6 Score=31.30 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=25.9
Q ss_pred cccCCCCCCCCeEEEEeecCCceEEEEcCccCCee
Q 034538 22 VFSCPFCNHGTSVECRIDMKNLIGEAICNICQESF 56 (92)
Q Consensus 22 ~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~ 56 (92)
+=.||.|+.+.+.-++ +.+.++-.+.|..||...
T Consensus 96 YVlC~~C~sPdT~L~k-~~~~r~~~l~C~ACGa~~ 129 (170)
T 2g2k_A 96 FVLCPECENPETDLHV-NPKKQTIGNSCKACGYRG 129 (170)
T ss_dssp HHSCTTTSSSCEEEEE-ETTTTEEEEEETTTCCCC
T ss_pred eEECCCCCCCccEEEE-ecCCCEEEEEccccCCcc
Confidence 3479999998765443 436778889999999853
No 40
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=82.47 E-value=1.8 Score=27.83 Aligned_cols=38 Identities=16% Similarity=0.532 Sum_probs=28.2
Q ss_pred CCCCCccc---cCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEe
Q 034538 16 VDKLDTVF---SCPFCNHGTSVECRIDMKNLIGEAICNICQESFST 58 (92)
Q Consensus 16 ~~kl~~~F---~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 58 (92)
++...+.| .||-|++ +.+.++... -.+.|.+||.....
T Consensus 23 v~~PnS~Fm~VkCp~C~n---~q~VFShA~--t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 23 IQAPNSYFMDVKCAQCQN---IQMIFSNAQ--STIICEKCSAILCK 63 (81)
T ss_dssp SCCCSCCEEEEECSSSCC---EEEEETTCS--SCEECSSSCCEEEE
T ss_pred eeCCCCcEEEeECCCCCC---eeEEEecCc--cEEEccCCCCEEee
Confidence 45556888 9999998 566676554 56899999986544
No 41
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=82.47 E-value=1.3 Score=32.67 Aligned_cols=54 Identities=24% Similarity=0.450 Sum_probs=37.7
Q ss_pred CCCCCccccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEeecCCCCcchhhhhhHHHHHH
Q 034538 16 VDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECE 78 (92)
Q Consensus 16 ~~kl~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~epVDVYs~WiD~~~ 78 (92)
.+-|...-.||.|+... ..+..| ...|.+.|..||+-.+ +..||-=++|--.-.
T Consensus 15 ~~~ln~~~~CPECGs~~-t~IV~D--~erGE~VCsdCGLVLE------EriID~GPEWRAFsn 68 (197)
T 3k1f_M 15 GPNLNIVLTCPECKVYP-PKIVER--FSEGDVVCALCGLVLS------DKLVDTRSEWRTFSN 68 (197)
T ss_dssp SSCCCCCCCCTTTCCSS-CCEEEE--GGGTEEEETTTCBBCC------CCCBCHHHHHHHHHC
T ss_pred ccccccCeECcCCCCcC-CeEEEe--CCCCEEEEcCCCCCcC------CceeECCCCCcCcCC
Confidence 45666677899999732 223333 3348999999998643 356899999986553
No 42
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=81.90 E-value=0.25 Score=37.70 Aligned_cols=49 Identities=27% Similarity=0.567 Sum_probs=31.4
Q ss_pred CCCCCccccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEeecCCCCcchhhhhhH
Q 034538 16 VDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEW 73 (92)
Q Consensus 16 ~~kl~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~epVDVYs~W 73 (92)
.+-|...-.||.|+...+ .+.. +...|.+.|..||.--+. ..||-=++|
T Consensus 15 ~~~~~~~~~Cp~Cg~~~~-~iv~--D~~~G~~vC~~CG~Vl~e------~~id~~~Ew 63 (345)
T 3k7a_M 15 GPNLNIVLTCPECKVYPP-KIVE--RFSEGDVVCALCGLVLSD------KLVDTRSEW 63 (345)
T ss_dssp --CCCCCCCCSTTCCSCC-CCCC--CSSSCSCCCSSSCCCCCC------CCCCTTCCC
T ss_pred CccccCCCcCcCCCCCCC-ceEE--ECCCCCEecCCCCeEccc------ccccCCccc
Confidence 346666778999998521 1222 345689999999986543 345665666
No 43
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=81.59 E-value=0.45 Score=33.82 Aligned_cols=38 Identities=16% Similarity=0.419 Sum_probs=26.0
Q ss_pred CccccCCCCCCCCeEEEEeec----CCceEEEEcCccCCeeE
Q 034538 20 DTVFSCPFCNHGTSVECRIDM----KNLIGEAICNICQESFS 57 (92)
Q Consensus 20 ~~~F~CPfC~~~~sV~vkidk----~~~~g~l~C~~Cg~~~~ 57 (92)
...|.||.|||..++--.+.. ..+.-...|..||-.+.
T Consensus 135 t~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 135 TDRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp BSSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred cCCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 347999999998765433321 12455788999998764
No 44
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=79.66 E-value=2.7 Score=25.93 Aligned_cols=51 Identities=18% Similarity=0.356 Sum_probs=32.7
Q ss_pred CccccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEeecCCCC----cch--hhhhhHHHH
Q 034538 20 DTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALT----EPI--DIYSEWIDE 76 (92)
Q Consensus 20 ~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~----epV--DVYs~WiD~ 76 (92)
+...=||.|+.. +... . ....+.|..||..|-..-...+ +|+ +.|..|+..
T Consensus 23 ~~~~wCP~C~~~--~~~~--~--~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w~~~ 79 (86)
T 2ct7_A 23 PKFLWCAQCSFG--FIYE--R--EQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRM 79 (86)
T ss_dssp CCEECCSSSCCC--EECC--C--SCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHHHHH
T ss_pred CCEeECcCCCch--heec--C--CCCceEeCCCCCccccccCCchhhcCCCCChHHHHHHHHh
Confidence 444459988873 3222 1 2344899999999987544333 455 788888865
No 45
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=79.66 E-value=0.72 Score=26.92 Aligned_cols=18 Identities=22% Similarity=0.735 Sum_probs=15.1
Q ss_pred CCCCCccccCCCCCCCCe
Q 034538 16 VDKLDTVFSCPFCNHGTS 33 (92)
Q Consensus 16 ~~kl~~~F~CPfC~~~~s 33 (92)
-..||.-|.||.|++.++
T Consensus 30 f~~lP~dw~CP~Cg~~K~ 47 (52)
T 1e8j_A 30 FEDLPDDWACPVCGASKD 47 (52)
T ss_dssp TTSSCTTCCCSSSCCCTT
T ss_pred hHHCCCCCcCCCCCCcHH
Confidence 456899999999999764
No 46
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=79.43 E-value=0.66 Score=26.61 Aligned_cols=17 Identities=29% Similarity=0.792 Sum_probs=13.8
Q ss_pred CCCCccccCCCCCCCCe
Q 034538 17 DKLDTVFSCPFCNHGTS 33 (92)
Q Consensus 17 ~kl~~~F~CPfC~~~~s 33 (92)
..||-.|.||.||+.++
T Consensus 25 ~~lP~dw~CP~Cg~~k~ 41 (46)
T 6rxn_A 25 DQLPDDWCCPVCGVSKD 41 (46)
T ss_dssp GGSCTTCBCTTTCCBGG
T ss_pred hhCCCCCcCcCCCCcHH
Confidence 36788899999999764
No 47
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=79.26 E-value=0.54 Score=32.52 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=25.3
Q ss_pred cccCCCCCCCCeEEEEeecCCceEEEEcCccCCee
Q 034538 22 VFSCPFCNHGTSVECRIDMKNLIGEAICNICQESF 56 (92)
Q Consensus 22 ~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~ 56 (92)
.=.||.|+.+.+.-++ +.++-.+.|..||...
T Consensus 102 yVlC~~C~sPdT~l~k---~~r~~~l~C~ACGa~~ 133 (138)
T 1nee_A 102 FVICHECNRPDTRIIR---EGRISLLKCEACGAKA 133 (138)
T ss_dssp HHHHTCCSSCSSCCEE---ETTTTEEECSTTSCCC
T ss_pred EEECCCCCCcCcEEEE---cCCeEEEEccCCCCCc
Confidence 3469999999877664 4567889999999853
No 48
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=78.95 E-value=0.95 Score=26.38 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=16.4
Q ss_pred CCCCCccccCCCCCCCCeEEE
Q 034538 16 VDKLDTVFSCPFCNHGTSVEC 36 (92)
Q Consensus 16 ~~kl~~~F~CPfC~~~~sV~v 36 (92)
-..||.-|.||.|++.++--.
T Consensus 29 f~~lP~dw~CP~Cg~~K~~F~ 49 (52)
T 1yk4_A 29 FEDLPDDWVCPLCGAPKSEFE 49 (52)
T ss_dssp GGGSCTTCBCTTTCCBGGGEE
T ss_pred HhHCCCCCcCCCCCCCHHHcE
Confidence 347899999999999775433
No 49
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=78.78 E-value=0.52 Score=26.40 Aligned_cols=42 Identities=19% Similarity=0.488 Sum_probs=25.5
Q ss_pred CCccccCCCCCCCCeEEEE--ee-cCCceEEEEcCccCCeeEeecCC
Q 034538 19 LDTVFSCPFCNHGTSVECR--ID-MKNLIGEAICNICQESFSTTITA 62 (92)
Q Consensus 19 l~~~F~CPfC~~~~sV~vk--id-k~~~~g~l~C~~Cg~~~~~~i~~ 62 (92)
-++.|.|+.||. +..-. +. .-.+.....|..||..|....+.
T Consensus 11 ~~k~~~C~~C~k--~F~~~~~l~~~H~~~k~~~C~~C~k~f~~~~~~ 55 (62)
T 1vd4_A 11 NRASFKCPVCSS--TFTDLEANQLFDPMTGTFRCTFCHTEVEEDESA 55 (62)
T ss_dssp SSSEEECSSSCC--EEEHHHHHHHEETTTTEEBCSSSCCBCEECTTC
T ss_pred CCCCccCCCCCc--hhccHHHhHhhcCCCCCEECCCCCCccccCccc
Confidence 356899999996 22110 00 01122357899999999875543
No 50
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=77.51 E-value=1.1 Score=26.37 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=17.6
Q ss_pred CCCCCccccCCCCCCCCeEEEEe
Q 034538 16 VDKLDTVFSCPFCNHGTSVECRI 38 (92)
Q Consensus 16 ~~kl~~~F~CPfC~~~~sV~vki 38 (92)
-..||.-|.||.|++.++--..+
T Consensus 30 f~~lP~dw~CP~Cga~K~~F~~~ 52 (55)
T 2v3b_B 30 WEDIPADWVCPDCGVGKIDFEMI 52 (55)
T ss_dssp GGGSCTTCCCTTTCCCGGGEEEC
T ss_pred hhHCCCCCcCCCCCCCHHHceec
Confidence 34589999999999987655444
No 51
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=77.27 E-value=0.24 Score=29.24 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=19.7
Q ss_pred ccccCCCCCCCCeEEEEeecCCceEEEEcCccCCe
Q 034538 21 TVFSCPFCNHGTSVECRIDMKNLIGEAICNICQES 55 (92)
Q Consensus 21 ~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~ 55 (92)
....||.||.. ...+...|+.||..
T Consensus 13 ~k~iCpkC~a~----------~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGAT----------NPWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCE----------ECTTCSSCSSSSSC
T ss_pred CCccCCCCCCc----------CCCCceecCCCCCc
Confidence 34569999983 56788899999975
No 52
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=76.28 E-value=0.45 Score=33.34 Aligned_cols=33 Identities=15% Similarity=0.408 Sum_probs=25.8
Q ss_pred ccccCCCCCCCCeEEEEeecCCceEEEEcCccCCee
Q 034538 21 TVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESF 56 (92)
Q Consensus 21 ~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~ 56 (92)
+.-.||.|+.+.+.-++ ++++-.+.|..||...
T Consensus 103 ~yVlC~~C~sPdT~L~k---~~r~~~l~C~ACGa~~ 135 (148)
T 2d74_B 103 EYVICPVCGSPDTKIIK---RDRFHFLKCEACGAET 135 (148)
T ss_dssp HHSSCSSSCCTTCCCCB---SSSSBCCCCSSSCCCC
T ss_pred HEEECCCCCCcCcEEEE---eCCEEEEEecCCCCCc
Confidence 34579999998876553 5678889999999854
No 53
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=76.26 E-value=0.84 Score=20.54 Aligned_cols=10 Identities=40% Similarity=1.105 Sum_probs=5.8
Q ss_pred ccccCCCCCC
Q 034538 21 TVFSCPFCNH 30 (92)
Q Consensus 21 ~~F~CPfC~~ 30 (92)
+.|.|+.||.
T Consensus 2 k~~~C~~C~k 11 (27)
T 2kvh_A 2 KPFSCSLCPQ 11 (27)
T ss_dssp CCEECSSSSC
T ss_pred cCccCCCcCh
Confidence 3466666663
No 54
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=75.17 E-value=0.24 Score=29.89 Aligned_cols=26 Identities=23% Similarity=0.584 Sum_probs=19.2
Q ss_pred CCCccccCCCCCCCCeEEEEeecCCceEEEEcCccCC
Q 034538 18 KLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQE 54 (92)
Q Consensus 18 kl~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~ 54 (92)
..|..-.||.||.. ...+-.|..||.
T Consensus 26 ~~p~l~~c~~cG~~-----------~~pH~vc~~CG~ 51 (60)
T 2zjr_Z 26 TAPNLTECPQCHGK-----------KLSHHICPNCGY 51 (60)
T ss_dssp CCCCCEECTTTCCE-----------ECTTBCCTTTCB
T ss_pred cCCCceECCCCCCE-----------eCCceEcCCCCc
Confidence 66888999999972 234557888884
No 55
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=74.90 E-value=0.8 Score=20.86 Aligned_cols=10 Identities=30% Similarity=1.192 Sum_probs=5.9
Q ss_pred ccccCCCCCC
Q 034538 21 TVFSCPFCNH 30 (92)
Q Consensus 21 ~~F~CPfC~~ 30 (92)
+.|.|+.|+.
T Consensus 2 k~~~C~~C~k 11 (27)
T 2kvg_A 2 APYRCPLCRA 11 (27)
T ss_dssp CTEEETTTTE
T ss_pred cCcCCCCCCc
Confidence 3466666663
No 56
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=74.79 E-value=1.8 Score=27.65 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=20.9
Q ss_pred cccCCCCCCCC-eEEEEeecCCceEEEEcCccCCe
Q 034538 22 VFSCPFCNHGT-SVECRIDMKNLIGEAICNICQES 55 (92)
Q Consensus 22 ~F~CPfC~~~~-sV~vkidk~~~~g~l~C~~Cg~~ 55 (92)
...||||+-.. |..|.. . .+.-.|-.||..
T Consensus 37 ~~~CPfh~e~~pSf~V~~--~--k~~~~Cf~cg~g 67 (103)
T 1d0q_A 37 FGLCPFHGEKTPSFSVSP--E--KQIFHCFGCGAG 67 (103)
T ss_dssp EECCSSSCCSSCCEEEET--T--TTEEEETTTCCE
T ss_pred EEECCCCCCCCCcEEEEc--C--CCEEEECCCCCC
Confidence 46899998433 555543 3 357899999975
No 57
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=73.94 E-value=0.33 Score=26.30 Aligned_cols=37 Identities=16% Similarity=0.478 Sum_probs=21.4
Q ss_pred cccCCCCCCCCeEEEEee----cCCceEEEEcCccCCeeEe
Q 034538 22 VFSCPFCNHGTSVECRID----MKNLIGEAICNICQESFST 58 (92)
Q Consensus 22 ~F~CPfC~~~~sV~vkid----k~~~~g~l~C~~Cg~~~~~ 58 (92)
.|.|+.|+..-+-.-.+. .-.+.....|..|+..|..
T Consensus 2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 42 (60)
T 2adr_A 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTR 42 (60)
T ss_dssp CBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESS
T ss_pred cCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCC
Confidence 589999986321111111 1123334789999998864
No 58
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=73.90 E-value=1.2 Score=21.44 Aligned_cols=11 Identities=36% Similarity=0.926 Sum_probs=9.0
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 9 ~k~~~C~~C~k 19 (37)
T 1p7a_A 9 IKPFQCPDCDR 19 (37)
T ss_dssp SSSBCCTTTCC
T ss_pred CCCccCCCCCc
Confidence 45799999986
No 59
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=72.98 E-value=1.2 Score=19.93 Aligned_cols=10 Identities=20% Similarity=1.065 Sum_probs=5.4
Q ss_pred ccccCCCCCC
Q 034538 21 TVFSCPFCNH 30 (92)
Q Consensus 21 ~~F~CPfC~~ 30 (92)
+.|.|+.|+.
T Consensus 2 k~~~C~~C~~ 11 (30)
T 2m0d_A 2 KPYQCDYCGR 11 (30)
T ss_dssp CCEECTTTCC
T ss_pred cCccCCCCCc
Confidence 3455666653
No 60
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=72.63 E-value=2.2 Score=27.21 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=12.8
Q ss_pred CCCCccccCCCCCCCCeEEEEe
Q 034538 17 DKLDTVFSCPFCNHGTSVECRI 38 (92)
Q Consensus 17 ~kl~~~F~CPfC~~~~sV~vki 38 (92)
..||.-|.||.|++.++--..+
T Consensus 55 edlPddW~CPvCga~K~~F~~i 76 (81)
T 2kn9_A 55 DDIPDDWSCPDCGAAKSDFEMV 76 (81)
T ss_dssp TTSCTTCCCTTTCCCGGGEEEE
T ss_pred hHCCCCCcCCCCCCCHHHcEEc
Confidence 3466666666666665544443
No 61
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=71.87 E-value=1.3 Score=19.59 Aligned_cols=9 Identities=33% Similarity=1.161 Sum_probs=5.6
Q ss_pred cccCCCCCC
Q 034538 22 VFSCPFCNH 30 (92)
Q Consensus 22 ~F~CPfC~~ 30 (92)
.|.|+.|+.
T Consensus 2 ~~~C~~C~~ 10 (29)
T 2m0e_A 2 EHKCPHCDK 10 (29)
T ss_dssp CCCCSSCCC
T ss_pred CCcCCCCCc
Confidence 466776664
No 62
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=71.78 E-value=0.75 Score=31.44 Aligned_cols=36 Identities=25% Similarity=0.236 Sum_probs=24.7
Q ss_pred CCCccccCCCCCCCCeEEEEeecCCceEEEEcCccCCee
Q 034538 18 KLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESF 56 (92)
Q Consensus 18 kl~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~ 56 (92)
...=.| ||.||+ -+-.+-++..+.....|+.||-.+
T Consensus 21 ~~~~~F-CPeCgN--mL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 21 MTTFRF-CRDCNN--MLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp -CCCCB-CTTTCC--BCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred ccCCee-CCCCCC--EeeECccCCCceeEEECCCCCCcE
Confidence 334455 999997 355555555567789999999654
No 63
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=71.78 E-value=1.4 Score=19.73 Aligned_cols=9 Identities=33% Similarity=1.062 Sum_probs=5.6
Q ss_pred cccCCCCCC
Q 034538 22 VFSCPFCNH 30 (92)
Q Consensus 22 ~F~CPfC~~ 30 (92)
.|.|+.|+.
T Consensus 2 ~~~C~~C~~ 10 (29)
T 1ard_A 2 SFVCEVCTR 10 (29)
T ss_dssp CCBCTTTCC
T ss_pred CeECCCCCc
Confidence 466777664
No 64
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=71.70 E-value=3.8 Score=27.69 Aligned_cols=10 Identities=30% Similarity=0.976 Sum_probs=5.5
Q ss_pred cccCCCCCCC
Q 034538 22 VFSCPFCNHG 31 (92)
Q Consensus 22 ~F~CPfC~~~ 31 (92)
.+.||.||+.
T Consensus 107 ~~~CP~Cgs~ 116 (139)
T 3a43_A 107 FLACPKCGSH 116 (139)
T ss_dssp GCSCSSSSCC
T ss_pred CCcCccccCC
Confidence 4555555554
No 65
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=71.48 E-value=1.4 Score=26.00 Aligned_cols=20 Identities=20% Similarity=0.649 Sum_probs=16.0
Q ss_pred CCCCCCccccCCCCCCCCeE
Q 034538 15 RVDKLDTVFSCPFCNHGTSV 34 (92)
Q Consensus 15 ~~~kl~~~F~CPfC~~~~sV 34 (92)
+-..||--|.||.|++.++-
T Consensus 29 ~fe~lP~dw~CP~Cg~~K~~ 48 (54)
T 4rxn_A 29 DFKDIPDDWVCPLCGVGKDE 48 (54)
T ss_dssp CGGGSCTTCBCTTTCCBGGG
T ss_pred ChhHCCCCCcCcCCCCcHHH
Confidence 34578999999999997653
No 66
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=71.47 E-value=0.73 Score=27.36 Aligned_cols=32 Identities=22% Similarity=0.542 Sum_probs=24.8
Q ss_pred cccCCCCCCCCeEEEEeecCCceEEEEcCc--cCCeeEee
Q 034538 22 VFSCPFCNHGTSVECRIDMKNLIGEAICNI--CQESFSTT 59 (92)
Q Consensus 22 ~F~CPfC~~~~sV~vkidk~~~~g~l~C~~--Cg~~~~~~ 59 (92)
.=+||.|+.. |.+..|-.++.|+. |+..|-..
T Consensus 6 ~k~CP~C~~~------Iek~~GCnhmtC~~~~C~~~FCw~ 39 (60)
T 1wd2_A 6 TKECPKCHVT------IEKDGGCNHMVCRNQNCKAEFCWV 39 (60)
T ss_dssp CCCCTTTCCC------CSSCCSCCSSSCCSSGGGSCCSSS
T ss_pred ceECcCCCCe------eEeCCCCCcEEECCCCcCCEEeeC
Confidence 3489999973 66778888999998 98877543
No 67
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=71.01 E-value=1.4 Score=19.76 Aligned_cols=9 Identities=33% Similarity=1.110 Sum_probs=5.0
Q ss_pred cccCCCCCC
Q 034538 22 VFSCPFCNH 30 (92)
Q Consensus 22 ~F~CPfC~~ 30 (92)
.|.|+.|+.
T Consensus 3 ~~~C~~C~k 11 (28)
T 2kvf_A 3 PYSCSVCGK 11 (28)
T ss_dssp SEECSSSCC
T ss_pred CccCCCCCc
Confidence 456666653
No 68
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=70.70 E-value=0.23 Score=31.83 Aligned_cols=56 Identities=20% Similarity=0.449 Sum_probs=35.7
Q ss_pred cccCCCCCCCCeEEEEeecCCceEEEEcCccCCee-EeecCCCCc-------------chhhhhhHHHHHHhhc
Q 034538 22 VFSCPFCNHGTSVECRIDMKNLIGEAICNICQESF-STTITALTE-------------PIDIYSEWIDECERVN 81 (92)
Q Consensus 22 ~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~-~~~i~~L~e-------------pVDVYs~WiD~~~~~n 81 (92)
.+.||.|+..+.+- .........|+.|+... ...+..|+. =|+.|+.|--.|.+..
T Consensus 5 ~~~c~~c~~~n~~p----~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~ 74 (148)
T 3p2a_A 5 NTVCTACMATNRLP----EERIDDGAKCGRCGHSLFDGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFA 74 (148)
T ss_dssp EEECTTTCCEEEEE----SSCSCSCCBCTTTCCBTTCCCCEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHH
T ss_pred EEECcccccccCCC----CcccccCCcchhcCCccccCCceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHH
Confidence 67899999865333 33344456799999863 223333321 2678888887777654
No 69
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.28 E-value=1.4 Score=21.01 Aligned_cols=11 Identities=27% Similarity=0.917 Sum_probs=8.2
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 7 ~k~~~C~~C~k 17 (36)
T 2elt_A 7 GKPYKCPQCSY 17 (36)
T ss_dssp CCSEECSSSSC
T ss_pred CCCCCCCCCCc
Confidence 45688888885
No 70
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=69.76 E-value=2.1 Score=26.35 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=18.1
Q ss_pred CCCCCccccCCCCCCCCeEEEEe
Q 034538 16 VDKLDTVFSCPFCNHGTSVECRI 38 (92)
Q Consensus 16 ~~kl~~~F~CPfC~~~~sV~vki 38 (92)
-..||.-|.||.|++.++--..+
T Consensus 34 f~~lPddw~CP~Cga~K~~F~~~ 56 (70)
T 1dx8_A 34 FVDLSDSFMCPACRSPKNQFKSI 56 (70)
T ss_dssp GGGSCTTCBCTTTCCBGGGEEEC
T ss_pred hhhCCCCCcCCCCCCCHHHceEc
Confidence 34588999999999987766655
No 71
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=69.59 E-value=1.6 Score=19.70 Aligned_cols=9 Identities=33% Similarity=1.261 Sum_probs=5.8
Q ss_pred cccCCCCCC
Q 034538 22 VFSCPFCNH 30 (92)
Q Consensus 22 ~F~CPfC~~ 30 (92)
.|.|+.|+.
T Consensus 2 ~~~C~~C~k 10 (30)
T 1paa_A 2 AYACGLCNR 10 (30)
T ss_dssp CSBCTTTCC
T ss_pred CcCCcccCc
Confidence 466777764
No 72
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.54 E-value=1.6 Score=20.97 Aligned_cols=11 Identities=36% Similarity=1.325 Sum_probs=8.3
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 7 ~k~~~C~~C~k 17 (36)
T 2els_A 7 GKIFTCEYCNK 17 (36)
T ss_dssp CCCEECTTTCC
T ss_pred CCCEECCCCCc
Confidence 35688888885
No 73
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=69.19 E-value=1.4 Score=19.71 Aligned_cols=7 Identities=57% Similarity=1.611 Sum_probs=3.7
Q ss_pred ccCCCCC
Q 034538 23 FSCPFCN 29 (92)
Q Consensus 23 F~CPfC~ 29 (92)
|.|+.|+
T Consensus 3 ~~C~~C~ 9 (29)
T 1rik_A 3 FACPECP 9 (29)
T ss_dssp EECSSSS
T ss_pred ccCCCCC
Confidence 5555555
No 74
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.82 E-value=1.6 Score=20.97 Aligned_cols=11 Identities=27% Similarity=0.896 Sum_probs=8.2
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 7 ~k~~~C~~C~k 17 (36)
T 2elq_A 7 GKPFKCSLCEY 17 (36)
T ss_dssp CCSEECSSSSC
T ss_pred CCCccCCCCCc
Confidence 45688888875
No 75
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=71.57 E-value=1 Score=20.01 Aligned_cols=9 Identities=22% Similarity=0.837 Sum_probs=5.0
Q ss_pred cccCCCCCC
Q 034538 22 VFSCPFCNH 30 (92)
Q Consensus 22 ~F~CPfC~~ 30 (92)
.|.|+.||.
T Consensus 2 p~~C~~C~k 10 (26)
T 2lvu_A 2 PYVCERCGK 10 (26)
Confidence 355666653
No 76
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.19 E-value=1.6 Score=21.02 Aligned_cols=11 Identities=27% Similarity=1.195 Sum_probs=8.0
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 7 ~k~~~C~~C~k 17 (37)
T 2elp_A 7 GRAMKCPYCDF 17 (37)
T ss_dssp CCCEECSSSSC
T ss_pred CCCeECCCCCh
Confidence 45688888875
No 77
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=68.18 E-value=1.7 Score=20.45 Aligned_cols=10 Identities=20% Similarity=0.840 Sum_probs=7.1
Q ss_pred ccccCCCCCC
Q 034538 21 TVFSCPFCNH 30 (92)
Q Consensus 21 ~~F~CPfC~~ 30 (92)
+.|.|+.|+.
T Consensus 6 k~~~C~~C~k 15 (35)
T 2elx_A 6 SGYVCALCLK 15 (35)
T ss_dssp CSEECSSSCC
T ss_pred CCeECCCCcc
Confidence 4578888874
No 78
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=67.86 E-value=1.9 Score=21.89 Aligned_cols=10 Identities=20% Similarity=-0.017 Sum_probs=6.4
Q ss_pred CccccCCCCC
Q 034538 20 DTVFSCPFCN 29 (92)
Q Consensus 20 ~~~F~CPfC~ 29 (92)
++.|.||.||
T Consensus 36 ~~~~~C~~cg 45 (45)
T 2epq_A 36 SVGKSGPSSG 45 (45)
T ss_dssp CCCCCCCCCC
T ss_pred CCCCCCcCCC
Confidence 3467777775
No 79
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=67.70 E-value=1.9 Score=30.19 Aligned_cols=28 Identities=25% Similarity=0.835 Sum_probs=19.2
Q ss_pred CCCccccCCCCCCCCeEEEEeecCCceEEEEcCccCC
Q 034538 18 KLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQE 54 (92)
Q Consensus 18 kl~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~ 54 (92)
..++.+.|+.||+ |.. . . .--.|.+||.
T Consensus 134 ~~~~~~~C~~CG~---i~~--~--~--~p~~CP~Cg~ 161 (170)
T 3pwf_A 134 EIKKVYICPICGY---TAV--D--E--APEYCPVCGA 161 (170)
T ss_dssp CCSCEEECTTTCC---EEE--S--C--CCSBCTTTCC
T ss_pred CCCCeeEeCCCCC---eeC--C--C--CCCCCCCCCC
Confidence 3468899999998 322 1 1 1129999996
No 80
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=67.33 E-value=1.7 Score=19.28 Aligned_cols=7 Identities=29% Similarity=0.985 Sum_probs=3.4
Q ss_pred ccCCCCC
Q 034538 23 FSCPFCN 29 (92)
Q Consensus 23 F~CPfC~ 29 (92)
|.|+.|+
T Consensus 3 ~~C~~C~ 9 (29)
T 2m0f_A 3 LKCRECG 9 (29)
T ss_dssp EECTTTS
T ss_pred ccCCCCC
Confidence 4455544
No 81
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=67.08 E-value=1.8 Score=19.27 Aligned_cols=9 Identities=22% Similarity=1.257 Sum_probs=5.4
Q ss_pred cccCCCCCC
Q 034538 22 VFSCPFCNH 30 (92)
Q Consensus 22 ~F~CPfC~~ 30 (92)
.|.|+.|+.
T Consensus 2 ~~~C~~C~k 10 (30)
T 1klr_A 2 TYQCQYCEF 10 (30)
T ss_dssp CCCCSSSSC
T ss_pred CccCCCCCC
Confidence 366666664
No 82
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=70.08 E-value=1.2 Score=20.12 Aligned_cols=10 Identities=20% Similarity=0.800 Sum_probs=6.0
Q ss_pred ccccCCCCCC
Q 034538 21 TVFSCPFCNH 30 (92)
Q Consensus 21 ~~F~CPfC~~ 30 (92)
+.|.|+.|+.
T Consensus 2 k~~~C~~C~k 11 (30)
T 2lvr_A 2 KPYVCIHCQR 11 (30)
Confidence 3466666664
No 83
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=66.57 E-value=0.48 Score=29.36 Aligned_cols=30 Identities=13% Similarity=0.398 Sum_probs=20.6
Q ss_pred CCccccCCCCCCCCeEEEEeecCCceEEEEcCccCCe
Q 034538 19 LDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQES 55 (92)
Q Consensus 19 l~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~ 55 (92)
.+-.|.|+.||++. + ++.. ..+.|..||.+
T Consensus 25 ~~v~Y~C~~CG~~~--e--~~~~---d~irCp~CG~R 54 (70)
T 1twf_L 25 ATLKYICAECSSKL--S--LSRT---DAVRCKDCGHR 54 (70)
T ss_dssp CCCCEECSSSCCEE--C--CCTT---STTCCSSSCCC
T ss_pred ceEEEECCCCCCcc--e--eCCC---CCccCCCCCce
Confidence 46789999999853 2 2222 23589999974
No 84
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=66.38 E-value=6.2 Score=25.13 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=27.5
Q ss_pred CccccC-----CCCCCCCeEEEEeecCCceEEEEcCccCCeeEee
Q 034538 20 DTVFSC-----PFCNHGTSVECRIDMKNLIGEAICNICQESFSTT 59 (92)
Q Consensus 20 ~~~F~C-----PfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~ 59 (92)
...+.| |+ +|+. |-+.||.+ .+.+.|.-||+.|...
T Consensus 26 ~~~V~CdGg~g~L-GHPr-VyL~ld~~--~g~~~CpYCg~~f~l~ 66 (80)
T 2jvm_A 26 TWKVACDGGEGAL-GHPR-VWLSIPHE--TGFVECGYCDRRYIHE 66 (80)
T ss_dssp CSEEEECCCSTTC-CCCC-EEEECCTT--TCEEECSSSSCEEEEH
T ss_pred CcEEEcCCCCCCC-CCCE-EEEEccCC--CCeEECCCCCCEEEec
Confidence 467888 44 8876 88888644 3788999999999764
No 85
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=65.79 E-value=1 Score=27.49 Aligned_cols=31 Identities=16% Similarity=0.427 Sum_probs=22.7
Q ss_pred CccccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeE
Q 034538 20 DTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFS 57 (92)
Q Consensus 20 ~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~ 57 (92)
+-.|.|..||++.. |+. ...|.|..||-+--
T Consensus 19 ~v~Y~C~~Cg~~~~----l~~---~~~iRC~~CG~RIL 49 (63)
T 3h0g_L 19 TMIYLCADCGARNT----IQA---KEVIRCRECGHRVM 49 (63)
T ss_dssp CCCCBCSSSCCBCC----CCS---SSCCCCSSSCCCCC
T ss_pred CeEEECCCCCCeee----cCC---CCceECCCCCcEEE
Confidence 67899999998754 322 24589999997643
No 86
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=65.68 E-value=3.1 Score=26.80 Aligned_cols=19 Identities=16% Similarity=0.447 Sum_probs=11.0
Q ss_pred CCCCccccCCCCCCCCeEE
Q 034538 17 DKLDTVFSCPFCNHGTSVE 35 (92)
Q Consensus 17 ~kl~~~F~CPfC~~~~sV~ 35 (92)
..||.-|.||.|++.++--
T Consensus 63 edlPddW~CPvCga~K~~F 81 (87)
T 1s24_A 63 EDIPDDWCCPDCGATKEDY 81 (87)
T ss_dssp GGCCTTCCCSSSCCCGGGE
T ss_pred hHCCCCCCCCCCCCCHHHh
Confidence 3456666666666655433
No 87
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.50 E-value=2.3 Score=20.17 Aligned_cols=11 Identities=18% Similarity=0.694 Sum_probs=8.6
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 7 ~~~~~C~~C~k 17 (36)
T 2elr_A 7 GKTHLCDMCGK 17 (36)
T ss_dssp CSSCBCTTTCC
T ss_pred CCCeecCcCCC
Confidence 45789999985
No 88
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=65.14 E-value=3.7 Score=21.83 Aligned_cols=30 Identities=27% Similarity=0.639 Sum_probs=19.9
Q ss_pred CCCccccCCCCCCCCeEEEEeecCCceEEEEcCccCC
Q 034538 18 KLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQE 54 (92)
Q Consensus 18 kl~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~ 54 (92)
+.-..|.|+.||+ -|++-. .+-+.++| ||+
T Consensus 2 k~~~fY~C~~CGn--ivev~~---~g~~~l~C--CG~ 31 (36)
T 1dxg_A 2 NEGDVYKCELCGQ--VVKVLE---EGGGTLVC--CGE 31 (36)
T ss_dssp CTTCEEECTTTCC--EEEEEE---CCSSCEEE--TTE
T ss_pred CcccEEEcCCCCc--EEEEEe---CCCcCEEe--CCc
Confidence 3467999999997 355544 33466777 654
No 89
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=65.07 E-value=1.1 Score=29.17 Aligned_cols=32 Identities=22% Similarity=0.674 Sum_probs=22.2
Q ss_pred CCCCccccCCCCCCCCeEEEEeecCCceEEEEcCccCCe
Q 034538 17 DKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQES 55 (92)
Q Consensus 17 ~kl~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~ 55 (92)
..+-..|.|+ ||+ .++++ + .+-...|..||..
T Consensus 43 ~a~KRFFkC~-C~~-Rt~sl--~---r~P~~~C~~Cg~~ 74 (92)
T 2kwq_A 43 NGVKRFFKCP-CGN-RTISL--D---RLPKKHCSTCGLF 74 (92)
T ss_dssp EEECEEEECT-TSC-EEEES--S---SSCCSCCTTTCSC
T ss_pred eeeEEEEECC-CCC-ceeEe--e---eCCCCCCCCCCCC
Confidence 3445689998 998 34444 3 3455689999975
No 90
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=64.96 E-value=3.6 Score=27.56 Aligned_cols=33 Identities=30% Similarity=0.745 Sum_probs=22.7
Q ss_pred CCccccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEe
Q 034538 19 LDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFST 58 (92)
Q Consensus 19 l~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 58 (92)
....|.|+.||+ -|++ + ..+-+.++| ||+..+-
T Consensus 4 ~~~fYkC~~CGn--ivev-~--~~g~~~l~C--CG~~m~~ 36 (126)
T 1vzi_A 4 RLQVYKCEVCGN--IVEV-L--NGGIGELVC--CNQDMKL 36 (126)
T ss_dssp TTCEEECTTTCC--EEEE-E--ECCSSCEEE--TTEECEE
T ss_pred cCcEEEcCCCCe--EEEE-E--cCCCcceec--CCccccc
Confidence 357999999997 3444 2 245577888 8876654
No 91
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=64.76 E-value=2.4 Score=20.90 Aligned_cols=11 Identities=18% Similarity=0.806 Sum_probs=9.0
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 9 ~k~~~C~~C~k 19 (42)
T 2ytb_A 9 EKPYRCDQCGK 19 (42)
T ss_dssp CCSBCCTTTTC
T ss_pred CCCeeCCCccc
Confidence 46799999986
No 92
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.67 E-value=2.1 Score=20.89 Aligned_cols=11 Identities=18% Similarity=0.745 Sum_probs=7.6
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 7 ~k~~~C~~C~k 17 (37)
T 2elm_A 7 GHLYYCSQCHY 17 (37)
T ss_dssp SCEEECSSSSC
T ss_pred CcCeECCCCCc
Confidence 35688888774
No 93
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=64.39 E-value=5.1 Score=27.02 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=15.5
Q ss_pred cCCCCCCCCeEEEEeecCC
Q 034538 24 SCPFCNHGTSVECRIDMKN 42 (92)
Q Consensus 24 ~CPfC~~~~sV~vkidk~~ 42 (92)
.||.||.+.||++.-.+..
T Consensus 54 kcprcgaegsvsivetkng 72 (131)
T 2x5c_A 54 KCPRCGAEGSVSIVETKNG 72 (131)
T ss_dssp ECTTTSCEEEEEEEECTTS
T ss_pred cCCCCCCccceEEEEecCC
Confidence 6999999999998765543
No 94
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.14 E-value=2.3 Score=20.34 Aligned_cols=11 Identities=18% Similarity=0.927 Sum_probs=8.0
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 7 ~k~~~C~~C~k 17 (36)
T 2elv_A 7 GLLYDCHICER 17 (36)
T ss_dssp CCCEECSSSCC
T ss_pred CCCeECCCCCC
Confidence 35688888874
No 95
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=63.12 E-value=2.4 Score=20.01 Aligned_cols=10 Identities=30% Similarity=0.796 Sum_probs=6.7
Q ss_pred ccccCCCCCC
Q 034538 21 TVFSCPFCNH 30 (92)
Q Consensus 21 ~~F~CPfC~~ 30 (92)
+.|.|+.|+.
T Consensus 6 k~~~C~~C~k 15 (35)
T 1srk_A 6 RPFVCRICLS 15 (35)
T ss_dssp SCEECSSSCC
T ss_pred cCeeCCCCCc
Confidence 4577777764
No 96
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=63.06 E-value=2.5 Score=19.99 Aligned_cols=9 Identities=44% Similarity=1.338 Sum_probs=5.8
Q ss_pred cccCCCCCC
Q 034538 22 VFSCPFCNH 30 (92)
Q Consensus 22 ~F~CPfC~~ 30 (92)
.|.|+.|+.
T Consensus 2 p~~C~~C~k 10 (32)
T 2kfq_A 2 AFACPACPK 10 (32)
T ss_dssp CSSSSSSCT
T ss_pred CCCCCCCCc
Confidence 467777764
No 97
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=62.91 E-value=5 Score=31.00 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=20.2
Q ss_pred ccCCCCCCC-CeEEEEeecCCceEEEEcCccCCe
Q 034538 23 FSCPFCNHG-TSVECRIDMKNLIGEAICNICQES 55 (92)
Q Consensus 23 F~CPfC~~~-~sV~vkidk~~~~g~l~C~~Cg~~ 55 (92)
.-||||+-. .|..|.. .. +.-.|-.||..
T Consensus 35 ~~CPfh~ektpSf~V~~--~k--~~~~CFgCg~g 64 (407)
T 2au3_A 35 TNCPFHPDDTPSFYVSP--SK--QIFKCFGCGVG 64 (407)
T ss_dssp ECCSSSCCSSCCEEEET--TT--TEEEETTTCCE
T ss_pred eeCcCCCCCCCeEEEEC--CC--CEEEECCCCCC
Confidence 479999843 2566554 33 46899999975
No 98
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.74 E-value=2 Score=20.58 Aligned_cols=11 Identities=36% Similarity=1.162 Sum_probs=8.0
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 7 ~k~~~C~~C~k 17 (37)
T 2elo_A 7 GRSYSCPVCEK 17 (37)
T ss_dssp CCCCEETTTTE
T ss_pred CCCcCCCCCCC
Confidence 35688888874
No 99
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=66.54 E-value=1.6 Score=19.72 Aligned_cols=9 Identities=22% Similarity=0.792 Sum_probs=5.0
Q ss_pred cccCCCCCC
Q 034538 22 VFSCPFCNH 30 (92)
Q Consensus 22 ~F~CPfC~~ 30 (92)
.|.|+.|+.
T Consensus 2 ~~~C~~C~k 10 (29)
T 2lvt_A 2 PCQCVMCGK 10 (29)
Confidence 355666653
No 100
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.80 E-value=2.7 Score=23.23 Aligned_cols=37 Identities=11% Similarity=0.232 Sum_probs=24.1
Q ss_pred CccccCCCCCCCCeEEEEeecC-----CceEEEEcC-ccCCeeEee
Q 034538 20 DTVFSCPFCNHGTSVECRIDMK-----NLIGEAICN-ICQESFSTT 59 (92)
Q Consensus 20 ~~~F~CPfC~~~~sV~vkidk~-----~~~g~l~C~-~Cg~~~~~~ 59 (92)
.+.|.|++|+. +.. .-... .+.-...|. .||..|...
T Consensus 8 ~~~~~C~~C~k--~f~-~~~L~~H~~~~~~~p~~C~~~C~k~f~~~ 50 (66)
T 2eod_A 8 KRTQPCTYCTK--EFV-FDTIQSHQYQCPRLPVACPNQCGVGTVAR 50 (66)
T ss_dssp CCEEECSSSCC--EEE-HHHHHHHHHHCSSSEEECTTCCSCCEEET
T ss_pred CCCeeccccCC--ccC-HHHHHHHHHHcCCcCccCCcccCcccccH
Confidence 45799999996 343 22111 233357899 999998764
No 101
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=61.17 E-value=2.8 Score=20.50 Aligned_cols=10 Identities=30% Similarity=1.238 Sum_probs=6.8
Q ss_pred ccccCCCCCC
Q 034538 21 TVFSCPFCNH 30 (92)
Q Consensus 21 ~~F~CPfC~~ 30 (92)
+.|.|+.|+.
T Consensus 5 k~~~C~~C~k 14 (39)
T 1njq_A 5 RSYTCSFCKR 14 (39)
T ss_dssp SSEECTTTCC
T ss_pred CceECCCCCc
Confidence 4577777774
No 102
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.71 E-value=3.1 Score=20.45 Aligned_cols=11 Identities=27% Similarity=0.875 Sum_probs=8.6
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 8 ~k~~~C~~C~k 18 (42)
T 2yte_A 8 EKPYSCAECKE 18 (42)
T ss_dssp CCSCBCTTTCC
T ss_pred CCCeECCCCCC
Confidence 45699999985
No 103
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=60.53 E-value=2.9 Score=19.96 Aligned_cols=9 Identities=44% Similarity=1.213 Sum_probs=5.7
Q ss_pred cccCCCCCC
Q 034538 22 VFSCPFCNH 30 (92)
Q Consensus 22 ~F~CPfC~~ 30 (92)
.|.|+.|+.
T Consensus 2 p~~C~~C~k 10 (33)
T 1rim_A 2 KFACPECPK 10 (33)
T ss_dssp CCCCSSSCC
T ss_pred cccCCCCCc
Confidence 466777664
No 104
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.42 E-value=3.1 Score=20.68 Aligned_cols=11 Identities=18% Similarity=0.564 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (44)
T 2en7_A 10 MKPYVCNECGK 20 (44)
T ss_dssp SSSSCCTTTCC
T ss_pred CcCeECCCCCC
Confidence 46799999986
No 105
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=60.12 E-value=5.7 Score=27.19 Aligned_cols=31 Identities=16% Similarity=0.484 Sum_probs=20.0
Q ss_pred ccCCC--CCCCCeEEEEeecCCceEEEEcCccCCeeEee
Q 034538 23 FSCPF--CNHGTSVECRIDMKNLIGEAICNICQESFSTT 59 (92)
Q Consensus 23 F~CPf--C~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~ 59 (92)
=.||. ||.. .+--... -..+|+.||.+|.++
T Consensus 119 ~~c~~~~cg~g-~fma~h~-----~r~~cgkc~~t~~~~ 151 (152)
T 3u5c_f 119 RECSNPTCGAG-VFLANHK-----DRLYCGKCHSVYKVN 151 (152)
T ss_dssp CBCCSTTSCSS-SBEEECS-----SCEEESSSSSCCEEC
T ss_pred CcCCCccCCCc-eEecccC-----CCcccCCCceEEEec
Confidence 46999 9963 2222111 156999999988764
No 106
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=59.58 E-value=3 Score=20.59 Aligned_cols=11 Identities=18% Similarity=0.824 Sum_probs=8.2
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 8 ~k~~~C~~C~k 18 (42)
T 2el5_A 8 ENPYECSECGK 18 (42)
T ss_dssp CCSEECSSSCC
T ss_pred CCCccCCCcCh
Confidence 45688888885
No 107
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=59.45 E-value=3.1 Score=20.69 Aligned_cols=11 Identities=18% Similarity=0.782 Sum_probs=8.5
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (44)
T 2eof_A 10 EKPYECNECQK 20 (44)
T ss_dssp CCSEECTTTCC
T ss_pred CCCeECCCCCc
Confidence 45699999985
No 108
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=59.41 E-value=0.65 Score=32.15 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=22.4
Q ss_pred CCccccCCCCCCCCeEEEEeecCCceEEEEcCccCCee
Q 034538 19 LDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESF 56 (92)
Q Consensus 19 l~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~ 56 (92)
+.+.=.||.|+.+.+.-+ ++.++-.+.|..||...
T Consensus 100 I~~yVlC~~C~sPdT~l~---k~~r~~~l~C~ACGa~~ 134 (139)
T 3cw2_K 100 LKAYVECSTCKSLDTILK---KEKKSWYIVCLACGAQT 134 (139)
T ss_dssp SSCCSSCCSSSSSCCCSC---SSCSTTTSSCCC-----
T ss_pred HHHeeECCCCCCcCcEEE---EeCCeEEEEecCCCCCC
Confidence 345567999999876544 45677789999999853
No 109
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.21 E-value=3.1 Score=20.50 Aligned_cols=11 Identities=27% Similarity=0.887 Sum_probs=8.4
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 8 ~k~~~C~~C~k 18 (41)
T 2ept_A 8 QRVYECQECGK 18 (41)
T ss_dssp CCCEECSSSCC
T ss_pred CCCeECCCCCC
Confidence 45688999885
No 110
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.10 E-value=3.5 Score=20.38 Aligned_cols=11 Identities=18% Similarity=0.911 Sum_probs=8.8
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 9 ~k~~~C~~C~k 19 (42)
T 2eos_A 9 EKPYPCEICGT 19 (42)
T ss_dssp SCCBCCSSSCC
T ss_pred CCCEECCCCCC
Confidence 45799999985
No 111
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.96 E-value=3.4 Score=20.89 Aligned_cols=11 Identities=18% Similarity=0.770 Sum_probs=9.1
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eq1_A 10 EKPYKCNECGK 20 (46)
T ss_dssp SCCCCCTTTTC
T ss_pred CCCeECCcCCh
Confidence 46799999986
No 112
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.94 E-value=3.1 Score=20.95 Aligned_cols=11 Identities=18% Similarity=0.770 Sum_probs=8.7
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eow_A 10 EKPYKCNECGK 20 (46)
T ss_dssp CCCEECTTSCC
T ss_pred CCCeeccccCC
Confidence 45699999985
No 113
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=58.87 E-value=2.3 Score=25.28 Aligned_cols=13 Identities=23% Similarity=0.902 Sum_probs=10.2
Q ss_pred ccccCCCCCCCCe
Q 034538 21 TVFSCPFCNHGTS 33 (92)
Q Consensus 21 ~~F~CPfC~~~~s 33 (92)
+.|.||||++.+.
T Consensus 32 ~~W~C~~C~~~N~ 44 (59)
T 2yrc_A 32 KLWACNFCYQRNQ 44 (59)
T ss_dssp TEEECSSSCCEEE
T ss_pred CEEEcccCCCcCC
Confidence 4799999998553
No 114
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.76 E-value=3.1 Score=20.85 Aligned_cols=11 Identities=27% Similarity=0.951 Sum_probs=8.4
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (44)
T 2yu5_A 10 ENPFKCSKCDR 20 (44)
T ss_dssp CCSEECSSSSC
T ss_pred CCCeECCCCCc
Confidence 45688999885
No 115
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.68 E-value=3.2 Score=21.01 Aligned_cols=11 Identities=27% Similarity=0.781 Sum_probs=8.5
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2en3_A 10 EKPFQCKECGM 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCeeCcccCh
Confidence 45689999985
No 116
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.56 E-value=3.3 Score=20.42 Aligned_cols=11 Identities=18% Similarity=0.791 Sum_probs=8.3
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 9 ~k~~~C~~C~k 19 (42)
T 2en2_A 9 EKPYKCETCGA 19 (42)
T ss_dssp SCSEECTTTCC
T ss_pred CCCEeCCCcCh
Confidence 45688888885
No 117
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.51 E-value=3.2 Score=20.91 Aligned_cols=11 Identities=27% Similarity=0.878 Sum_probs=8.8
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ytf_A 10 EKPFECSECQK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCcCCCCCCc
Confidence 45799999985
No 118
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=58.09 E-value=2.7 Score=22.02 Aligned_cols=11 Identities=27% Similarity=0.564 Sum_probs=8.7
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 6 ekp~~C~~CgK 16 (36)
T 1fv5_A 6 PARFMCLPCGI 16 (36)
T ss_dssp CCCCEETTTTE
T ss_pred ccCeECCCCCC
Confidence 56789999884
No 119
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=57.94 E-value=1.1 Score=26.19 Aligned_cols=11 Identities=27% Similarity=0.561 Sum_probs=5.7
Q ss_pred EEcCccCCeeE
Q 034538 47 AICNICQESFS 57 (92)
Q Consensus 47 l~C~~Cg~~~~ 57 (92)
..|..|+..|.
T Consensus 65 ~~C~~C~~~f~ 75 (96)
T 2dmd_A 65 FKCQICPYASR 75 (96)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCCccC
Confidence 45555555543
No 120
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.89 E-value=3.6 Score=20.77 Aligned_cols=11 Identities=18% Similarity=0.770 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2enf_A 10 EKPYKCNECGK 20 (46)
T ss_dssp CCSCBCSSSCC
T ss_pred CcCeECCCCCc
Confidence 46799999985
No 121
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.51 E-value=3.5 Score=20.92 Aligned_cols=11 Identities=27% Similarity=0.914 Sum_probs=8.5
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eoy_A 10 EKCFKCNKCEK 20 (46)
T ss_dssp SCCEECSSSCC
T ss_pred CCCEECcCCCC
Confidence 45689999985
No 122
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=57.46 E-value=11 Score=23.25 Aligned_cols=30 Identities=27% Similarity=0.618 Sum_probs=22.9
Q ss_pred cCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEe
Q 034538 24 SCPFCNHGTSVECRIDMKNLIGEAICNICQESFST 58 (92)
Q Consensus 24 ~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 58 (92)
.||-|++ +.+.++... -.+.|.+||.....
T Consensus 9 KCp~C~n---iq~VFShA~--tvV~C~~Cg~~L~~ 38 (66)
T 1qxf_A 9 KCPDCEH---EQVIFDHPS--TIVKCIICGRTVAE 38 (66)
T ss_dssp ECTTTCC---EEEEESSCS--SCEECSSSCCEEEE
T ss_pred ECCCCCC---ceEEEecCc--eEEEcccCCCEEee
Confidence 6999998 566676654 56899999987654
No 123
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.37 E-value=3.5 Score=20.62 Aligned_cols=11 Identities=18% Similarity=0.700 Sum_probs=8.5
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (44)
T 2emb_A 10 RKRYECSKCQA 20 (44)
T ss_dssp CSSEECTTTCC
T ss_pred CCCeECCCCCC
Confidence 45699999985
No 124
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.31 E-value=3.4 Score=20.79 Aligned_cols=11 Identities=18% Similarity=0.773 Sum_probs=8.5
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (44)
T 2epv_A 10 EKPYECNECGK 20 (44)
T ss_dssp CCSEECSSSCC
T ss_pred CcCeECCCCCc
Confidence 45788998885
No 125
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=57.26 E-value=3.3 Score=20.98 Aligned_cols=11 Identities=27% Similarity=0.866 Sum_probs=8.6
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2emj_A 10 EKPFECAECGK 20 (46)
T ss_dssp CCSEECSSSSC
T ss_pred CCCEECCCCCc
Confidence 45799999885
No 126
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=57.09 E-value=7.4 Score=25.74 Aligned_cols=40 Identities=18% Similarity=0.322 Sum_probs=29.6
Q ss_pred CCCCccccCCCCCCCCeEEEEeec---CCceEEEEcCccCCeeEe
Q 034538 17 DKLDTVFSCPFCNHGTSVECRIDM---KNLIGEAICNICQESFST 58 (92)
Q Consensus 17 ~kl~~~F~CPfC~~~~sV~vkidk---~~~~g~l~C~~Cg~~~~~ 58 (92)
+.+.=.|+|--|++-. .=.|.+ ..|+-.+.|..|...+-.
T Consensus 8 ~~~~l~FTC~~C~tRs--~k~iSk~aY~~GvViv~C~gC~n~HlI 50 (100)
T 2e2z_A 8 PKMMIAFTCKKCNTRS--SHTMSKQAYEKGTVLISCPHCKVRHLI 50 (100)
T ss_dssp CEEEEEEEETTTTEEE--EEEEEHHHHHTSEEEEECTTTCCEEES
T ss_pred CcEEEEEEccCCCCcc--hhhcCHHHhhCCEEEEEcCCCccceEe
Confidence 4677799999999732 223333 379999999999987543
No 127
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.00 E-value=3.5 Score=20.82 Aligned_cols=11 Identities=18% Similarity=0.797 Sum_probs=8.7
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ep3_A 10 EKPYRCAECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCeECCCCCc
Confidence 46799999985
No 128
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=56.90 E-value=3.6 Score=20.19 Aligned_cols=11 Identities=27% Similarity=0.794 Sum_probs=8.1
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 9 ~~~~~C~~C~k 19 (42)
T 2epc_A 9 ETPYLCGQCGK 19 (42)
T ss_dssp SCCEECSSSCC
T ss_pred CCCeECCCCCc
Confidence 45688888875
No 129
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.80 E-value=3.6 Score=20.72 Aligned_cols=11 Identities=18% Similarity=0.712 Sum_probs=8.6
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2yts_A 10 EKPYICNECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CcCEECCCCCh
Confidence 45799999985
No 130
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.77 E-value=3.6 Score=20.79 Aligned_cols=11 Identities=18% Similarity=0.797 Sum_probs=8.5
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2emi_A 10 ERHYECSECGK 20 (46)
T ss_dssp CCCEECSSSCC
T ss_pred CCCCCCCCCCc
Confidence 45699999985
No 131
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.63 E-value=4.1 Score=20.64 Aligned_cols=11 Identities=27% Similarity=0.842 Sum_probs=9.0
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2yth_A 10 EKPFQCEECGK 20 (46)
T ss_dssp SSSBCCSSSCC
T ss_pred CcCCCCCCCCc
Confidence 46799999986
No 132
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=56.62 E-value=7.2 Score=25.44 Aligned_cols=44 Identities=18% Similarity=0.153 Sum_probs=28.8
Q ss_pred CCCccccCCCCCCCCeEEEEeec----------------CC-------ceEEEEcCccCCeeEee--cCCC
Q 034538 18 KLDTVFSCPFCNHGTSVECRIDM----------------KN-------LIGEAICNICQESFSTT--ITAL 63 (92)
Q Consensus 18 kl~~~F~CPfC~~~~sV~vkidk----------------~~-------~~g~l~C~~Cg~~~~~~--i~~L 63 (92)
.|--.--||.|.++ +...-.+ .. ..+.|.|..||..|-.. |+-|
T Consensus 4 ~LLdILaCP~cK~p--L~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~YPI~dGIPvm 72 (97)
T 2k5r_A 4 KLLHLLCSPDTRQP--LSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFRIEDSIPVL 72 (97)
T ss_dssp TTCSSCCCCTTSSC--CEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEEEEETTEEEC
T ss_pred HHhhheECCCCCCc--ccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCccccCCCccc
Confidence 45667789999984 4331110 01 15899999999999763 5544
No 133
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.59 E-value=3.9 Score=20.63 Aligned_cols=11 Identities=18% Similarity=0.770 Sum_probs=9.0
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2yti_A 10 EKPYKCNECGK 20 (46)
T ss_dssp CCTTCCSSSCC
T ss_pred CcCeECCCCCc
Confidence 46799999986
No 134
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=56.55 E-value=7.3 Score=24.95 Aligned_cols=38 Identities=21% Similarity=0.493 Sum_probs=25.7
Q ss_pred CCCCCccc---cCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEe
Q 034538 16 VDKLDTVF---SCPFCNHGTSVECRIDMKNLIGEAICNICQESFST 58 (92)
Q Consensus 16 ~~kl~~~F---~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 58 (92)
.+...+.| .||-|++ +.+.+.... ..+.|.+||..-..
T Consensus 25 v~~PnS~Fm~VkCp~C~~---~q~VFSha~--t~V~C~~Cg~~L~~ 65 (82)
T 3u5c_b 25 VQGPRSYFLDVKCPGCLN---ITTVFSHAQ--TAVTCESCSTILCT 65 (82)
T ss_dssp SCCCCCCEEEEECTTSCS---CEEEESBCS--SCCCCSSSCCCCEE
T ss_pred ccCCCCcEEEEECCCCCC---eeEEEecCC--eEEEccccCCEEec
Confidence 34445566 7999998 455565543 56899999976543
No 135
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.43 E-value=4 Score=20.54 Aligned_cols=11 Identities=18% Similarity=0.791 Sum_probs=8.8
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2eov_A 10 EKPYKCSDCGK 20 (46)
T ss_dssp CCSCBCSSSCC
T ss_pred CCCccCCccCh
Confidence 45799999985
No 136
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=56.26 E-value=12 Score=22.88 Aligned_cols=38 Identities=16% Similarity=0.341 Sum_probs=26.2
Q ss_pred CCCCccc---cCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEee
Q 034538 17 DKLDTVF---SCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTT 59 (92)
Q Consensus 17 ~kl~~~F---~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~ 59 (92)
+...+.| .||-|++ +.+.+.+.. ..+.|.+||..-..+
T Consensus 7 ~~PnS~Fm~VkCp~C~~---~q~VFSha~--t~V~C~~Cgt~L~~P 47 (63)
T 3j20_W 7 PMPRSRFLRVKCIDCGN---EQIVFSHPA--TKVRCLICGATLVEP 47 (63)
T ss_dssp CCCSCCEEEEECSSSCC---EEEEESSCS--SCEECSSSCCEEEEC
T ss_pred cCCCCcEEEEECCCCCC---eeEEEecCC--eEEEccCcCCEEecC
Confidence 3334555 7999998 455576554 568999999876543
No 137
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.15 E-value=4 Score=20.60 Aligned_cols=11 Identities=27% Similarity=0.981 Sum_probs=9.0
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2eoq_A 10 EKPFKCDICGK 20 (46)
T ss_dssp SCSCCCSSSCC
T ss_pred CCCcCCCcCCc
Confidence 46799999986
No 138
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.12 E-value=4.1 Score=20.55 Aligned_cols=11 Identities=27% Similarity=0.821 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2emg_A 10 ENPFICSECGK 20 (46)
T ss_dssp CCSCBCTTTCC
T ss_pred CCCEECCccCc
Confidence 45799999985
No 139
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.96 E-value=3.1 Score=20.77 Aligned_cols=11 Identities=18% Similarity=0.718 Sum_probs=8.5
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (44)
T 2eoj_A 10 ENPYECCECGK 20 (44)
T ss_dssp CCSCEETTTTE
T ss_pred CcCeeCCCCCC
Confidence 45789999984
No 140
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.78 E-value=4 Score=20.51 Aligned_cols=11 Identities=18% Similarity=0.794 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ep1_A 10 EKPYECSDCGK 20 (46)
T ss_dssp CCSSCCSSSCC
T ss_pred CCCcCCCCCCc
Confidence 45799999986
No 141
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.75 E-value=3.8 Score=20.69 Aligned_cols=11 Identities=18% Similarity=0.917 Sum_probs=8.7
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2em3_A 10 EKPYECKVCSK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CcCeECCCCCc
Confidence 45699999985
No 142
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.63 E-value=4.1 Score=20.68 Aligned_cols=11 Identities=18% Similarity=0.912 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eon_A 10 EKPYKCQVCGK 20 (46)
T ss_dssp CCSCBCSSSCC
T ss_pred CcccCCCCCCc
Confidence 45799999985
No 143
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.48 E-value=3.1 Score=21.10 Aligned_cols=11 Identities=27% Similarity=0.954 Sum_probs=8.3
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eoz_A 10 EKPYSCNVCGK 20 (46)
T ss_dssp CCSEEETTTTE
T ss_pred CCCeECcccCh
Confidence 45688998884
No 144
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.42 E-value=3.9 Score=20.65 Aligned_cols=11 Identities=18% Similarity=0.748 Sum_probs=8.7
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ytj_A 10 EKPYICAECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CcCeECCCCCh
Confidence 45799999985
No 145
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.39 E-value=4.3 Score=20.39 Aligned_cols=11 Identities=18% Similarity=0.616 Sum_probs=9.0
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2eop_A 10 EKPHECRECGK 20 (46)
T ss_dssp CCSCBCTTTCC
T ss_pred CCCeeCCCCCc
Confidence 45799999985
No 146
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.39 E-value=4.1 Score=20.55 Aligned_cols=12 Identities=17% Similarity=0.650 Sum_probs=9.4
Q ss_pred CccccCCCCCCC
Q 034538 20 DTVFSCPFCNHG 31 (92)
Q Consensus 20 ~~~F~CPfC~~~ 31 (92)
++.|.|+.|+..
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2eq2_A 10 GKPYQCNECGKA 21 (46)
T ss_dssp SCSSSCCSSCCC
T ss_pred CCCeECCCCCcc
Confidence 457999999863
No 147
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.30 E-value=3.9 Score=20.71 Aligned_cols=11 Identities=18% Similarity=0.791 Sum_probs=8.5
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2yto_A 10 EKPYKCSDCGK 20 (46)
T ss_dssp CCCEECSSSCC
T ss_pred CCCEECcccCC
Confidence 45689999885
No 148
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=55.10 E-value=4.4 Score=20.83 Aligned_cols=10 Identities=10% Similarity=0.135 Sum_probs=6.6
Q ss_pred CccccCCCCC
Q 034538 20 DTVFSCPFCN 29 (92)
Q Consensus 20 ~~~F~CPfC~ 29 (92)
++.|.|+.|+
T Consensus 38 ~k~~~C~~C~ 47 (48)
T 2epr_A 38 EKPYSSGPSS 47 (48)
T ss_dssp CCCCCSCCCC
T ss_pred CCCccCCCCC
Confidence 3457777776
No 149
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.99 E-value=4 Score=20.57 Aligned_cols=11 Identities=18% Similarity=0.854 Sum_probs=8.7
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2emh_A 10 ERPYICTVCGK 20 (46)
T ss_dssp CCSEECTTTCC
T ss_pred CCCcCCCCCCc
Confidence 46799999985
No 150
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=54.93 E-value=4.2 Score=20.48 Aligned_cols=11 Identities=18% Similarity=0.776 Sum_probs=9.0
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2em0_A 10 EKTWKCRECDM 20 (46)
T ss_dssp CCCCCCSSSCC
T ss_pred CcCeECCCCCc
Confidence 46799999986
No 151
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.88 E-value=4.3 Score=20.54 Aligned_cols=11 Identities=18% Similarity=0.712 Sum_probs=9.0
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eoh_A 10 KKPYECKECRK 20 (46)
T ss_dssp SCSCCCSSSCC
T ss_pred CCCcCCCCcCc
Confidence 45799999986
No 152
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.87 E-value=4.4 Score=20.41 Aligned_cols=11 Identities=18% Similarity=0.703 Sum_probs=9.1
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ytn_A 10 KKPYKCNECGK 20 (46)
T ss_dssp CSSCBCTTTCC
T ss_pred CcCeECCCCCC
Confidence 46799999986
No 153
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.82 E-value=4.1 Score=20.47 Aligned_cols=11 Identities=18% Similarity=0.911 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eq4_A 10 EKLYNCKECGK 20 (46)
T ss_dssp CCCCCBTTTTB
T ss_pred CCCeECCCCCC
Confidence 45799999985
No 154
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.79 E-value=4.5 Score=20.46 Aligned_cols=11 Identities=18% Similarity=0.896 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2enh_A 10 EKPYECDVCRK 20 (46)
T ss_dssp SSSCBCTTTCC
T ss_pred CCCcCCCCcCc
Confidence 45799999985
No 155
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.73 E-value=4 Score=20.49 Aligned_cols=11 Identities=18% Similarity=0.739 Sum_probs=8.5
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2yrj_A 10 EKPYRCGECGK 20 (46)
T ss_dssp CCCEECSSSCC
T ss_pred CCCeECCCCCC
Confidence 45689999885
No 156
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.68 E-value=4 Score=20.50 Aligned_cols=11 Identities=18% Similarity=0.622 Sum_probs=8.7
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2epw_A 10 EKPCKCTECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCeeCCCCCC
Confidence 45699999985
No 157
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.67 E-value=4.1 Score=20.63 Aligned_cols=11 Identities=18% Similarity=0.658 Sum_probs=8.5
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2em4_A 10 QRPYECIECGK 20 (46)
T ss_dssp SSSEECSSSCC
T ss_pred CcCcCCCCCCC
Confidence 45689999885
No 158
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=54.65 E-value=16 Score=27.16 Aligned_cols=38 Identities=21% Similarity=0.439 Sum_probs=23.8
Q ss_pred cccCCCCCCCCeEEEEeec----------------CC---ceEEEEcCccCCeeEeecC
Q 034538 22 VFSCPFCNHGTSVECRIDM----------------KN---LIGEAICNICQESFSTTIT 61 (92)
Q Consensus 22 ~F~CPfC~~~~sV~vkidk----------------~~---~~g~l~C~~Cg~~~~~~i~ 61 (92)
...||.||+. +..-++. .. ......|..||..+.....
T Consensus 12 ~~~C~~Cg~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~C~~Cg~v~~~~~~ 68 (416)
T 4e2x_A 12 PTACRVCGGG--VQEFLDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDSCEMVQLTEEV 68 (416)
T ss_dssp CEECTTTSCE--EEEEEEEEEEECTTCCBCTTSCSCCCEEEEEEEEETTTCCEEESSCC
T ss_pred CCcCCCCCCe--eeeeeECCCCCccccCCChhhcCccceecceEEECCCCCceeecCcC
Confidence 4689999986 3322222 11 1345779999998875443
No 159
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=54.59 E-value=6.2 Score=28.37 Aligned_cols=28 Identities=21% Similarity=0.634 Sum_probs=17.5
Q ss_pred cCCCCCCCCeEEEEeecCCceEEEEcCccCCeeE
Q 034538 24 SCPFCNHGTSVECRIDMKNLIGEAICNICQESFS 57 (92)
Q Consensus 24 ~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~ 57 (92)
.||.|+.. ++--.. .. ..+|+.||++|.
T Consensus 115 ~Cp~Cg~g-~fma~h--~d---R~~CGkC~~t~~ 142 (189)
T 2xzm_9 115 GCPKCGPG-IFMAKH--YD---RHYCGKCHLTLK 142 (189)
T ss_dssp ECSTTCSS-CEEEEC--SS---CEEETTTCCCBC
T ss_pred cCCccCCC-ccccCc--cC---CCccCCceeEEE
Confidence 49999963 222211 11 349999999874
No 160
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.58 E-value=4.3 Score=20.53 Aligned_cols=11 Identities=27% Similarity=0.818 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2emz_A 10 ERPFKCNECGK 20 (46)
T ss_dssp CCSCCCSSSCC
T ss_pred CCCeECCCCCc
Confidence 46799999985
No 161
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=54.51 E-value=4.6 Score=20.43 Aligned_cols=11 Identities=27% Similarity=0.800 Sum_probs=9.0
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ely_A 10 EKPFKCVECGK 20 (46)
T ss_dssp CCSBCCSSSCC
T ss_pred CCCcccCccCc
Confidence 45799999986
No 162
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.35 E-value=4.1 Score=20.46 Aligned_cols=11 Identities=18% Similarity=1.014 Sum_probs=8.7
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eme_A 10 EKPYVCDYCGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCeECCCCCh
Confidence 45699999985
No 163
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=54.31 E-value=4.1 Score=20.46 Aligned_cols=11 Identities=18% Similarity=0.803 Sum_probs=8.7
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2em9_A 10 EKPYNCKECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CcCeECCcccc
Confidence 46799999985
No 164
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.19 E-value=4.2 Score=20.59 Aligned_cols=11 Identities=18% Similarity=0.797 Sum_probs=8.6
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ytp_A 10 ERHYECSECGK 20 (46)
T ss_dssp CCCEECSSSCC
T ss_pred CCCeECCcCCc
Confidence 45689999985
No 165
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=54.02 E-value=17 Score=29.00 Aligned_cols=37 Identities=19% Similarity=0.379 Sum_probs=24.9
Q ss_pred ccccCCCCCCCCeEEEEe-----ecCCceEEEEcCccCCeeE
Q 034538 21 TVFSCPFCNHGTSVECRI-----DMKNLIGEAICNICQESFS 57 (92)
Q Consensus 21 ~~F~CPfC~~~~sV~vki-----dk~~~~g~l~C~~Cg~~~~ 57 (92)
-.-.||.|++.......+ .+.--+-...|..||-+..
T Consensus 219 ~~s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr~n 260 (404)
T 2qkd_A 219 FNTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTN 260 (404)
T ss_dssp EEECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCEEE
T ss_pred ecccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCccc
Confidence 455799999865544333 2234667889999998753
No 166
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.96 E-value=4.3 Score=20.48 Aligned_cols=11 Identities=18% Similarity=0.770 Sum_probs=8.7
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ene_A 10 EKPYKCNECGK 20 (46)
T ss_dssp SSSEECSSSCC
T ss_pred CCCeECCCCCc
Confidence 45699999985
No 167
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=53.93 E-value=7.3 Score=26.13 Aligned_cols=27 Identities=30% Similarity=0.600 Sum_probs=13.9
Q ss_pred CCCCCCCCeEEEEeecCCceEEEEcCccC
Q 034538 25 CPFCNHGTSVECRIDMKNLIGEAICNICQ 53 (92)
Q Consensus 25 CPfC~~~~sV~vkidk~~~~g~l~C~~Cg 53 (92)
||.||+. +.+.+-.....-.-.|..||
T Consensus 6 C~~CG~~--~~~~~~~G~~~~~~~~~~~~ 32 (189)
T 3cng_A 6 CSQCGGE--VILRIPEGDTLPRYICPKCH 32 (189)
T ss_dssp CTTTCCB--CEEECCTTCSSCEEEETTTT
T ss_pred CchhCCc--cccccccCCCCcceECCCCC
Confidence 7778774 34444222222234577777
No 168
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.93 E-value=3.5 Score=20.77 Aligned_cols=11 Identities=18% Similarity=0.812 Sum_probs=8.7
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eq3_A 10 EKPYECNQCGK 20 (46)
T ss_dssp CCSSEETTTTE
T ss_pred CCCeECCCCCh
Confidence 46799999984
No 169
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=53.90 E-value=4.7 Score=20.39 Aligned_cols=11 Identities=18% Similarity=0.782 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2emk_A 10 EKPYECKECGK 20 (46)
T ss_dssp SCSCBCSSSCC
T ss_pred CCceECCCCCc
Confidence 45699999985
No 170
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.73 E-value=3.5 Score=20.81 Aligned_cols=11 Identities=27% Similarity=0.921 Sum_probs=8.4
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (45)
T 2epu_A 10 QKPFECTHCGK 20 (45)
T ss_dssp CCSEEETTTTE
T ss_pred CcCccCCCCCC
Confidence 45689999984
No 171
>1y07_A Desulfoferrodoxin (RBO); beta-sheet, iron binding, oxidoreductase; 1.55A {Treponema pallidum subsp}
Probab=53.73 E-value=7 Score=26.21 Aligned_cols=32 Identities=9% Similarity=-0.023 Sum_probs=18.5
Q ss_pred CccccCCC-CCCCCeEEEEeecCCceEEEEcCccCCeeEe
Q 034538 20 DTVFSCPF-CNHGTSVECRIDMKNLIGEAICNICQESFST 58 (92)
Q Consensus 20 ~~~F~CPf-C~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 58 (92)
...|.|+. ||+ -|++ + ..+-+.++| ||+..+.
T Consensus 5 ~~fYkC~~~CGn--ivev-~--~~g~~~l~C--CG~~m~~ 37 (128)
T 1y07_A 5 LSFFLQKESAGF--FLGM-D--APAGSSVAC--GSEVLRA 37 (128)
T ss_dssp EEEECC-----C--EEEE-S--CCTTCEEEE--TTEEEEC
T ss_pred CcEEECCCCCCC--EEEE-E--cCCCcceee--cCccccc
Confidence 35899999 986 3433 3 356688888 8876654
No 172
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.72 E-value=4.8 Score=20.33 Aligned_cols=11 Identities=27% Similarity=0.881 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2en9_A 10 KKLFKCNECKK 20 (46)
T ss_dssp SCCCBCTTTCC
T ss_pred CCCEECCccCc
Confidence 46799999985
No 173
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.66 E-value=4.3 Score=20.54 Aligned_cols=11 Identities=27% Similarity=0.836 Sum_probs=8.6
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2em2_A 10 EKPFKCKECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCEECCcCCc
Confidence 45799999985
No 174
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.66 E-value=4.9 Score=20.23 Aligned_cols=11 Identities=27% Similarity=0.770 Sum_probs=9.0
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2epz_A 10 EKPFDCIDCGK 20 (46)
T ss_dssp CCSBCCTTTCC
T ss_pred CCCeECCCCCc
Confidence 45799999986
No 175
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.60 E-value=4.3 Score=20.46 Aligned_cols=11 Identities=18% Similarity=0.933 Sum_probs=8.6
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eml_A 10 EKPYECSVCGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCeeCCCcCC
Confidence 45699999985
No 176
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.38 E-value=4.4 Score=20.44 Aligned_cols=11 Identities=18% Similarity=0.960 Sum_probs=8.8
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ep2_A 10 EKPYECSICGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CcCcCCCCCCc
Confidence 46799999985
No 177
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=53.13 E-value=12 Score=24.82 Aligned_cols=29 Identities=31% Similarity=0.678 Sum_probs=20.3
Q ss_pred ccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEee
Q 034538 23 FSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTT 59 (92)
Q Consensus 23 F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~ 59 (92)
-.||-|+++ ++ ...+ ...|..|+..|...
T Consensus 33 ~~CP~Cq~e--L~----~~g~--~~hC~~C~~~f~~~ 61 (101)
T 2jne_A 33 LHCPQCQHV--LD----QDNG--HARCRSCGEFIEMK 61 (101)
T ss_dssp CBCSSSCSB--EE----EETT--EEEETTTCCEEEEE
T ss_pred ccCccCCCc--ce----ecCC--EEECccccchhhcc
Confidence 689999985 22 2333 55799999988753
No 178
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.65 E-value=5.1 Score=20.11 Aligned_cols=11 Identities=18% Similarity=0.655 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (47)
T 2epx_A 10 KKPYECIECGK 20 (47)
T ss_dssp CCSBCCSSSCC
T ss_pred CCCEECCccCc
Confidence 45799999986
No 179
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=52.65 E-value=15 Score=22.89 Aligned_cols=15 Identities=13% Similarity=0.286 Sum_probs=11.1
Q ss_pred CCCCccccCCC--CCCC
Q 034538 17 DKLDTVFSCPF--CNHG 31 (92)
Q Consensus 17 ~kl~~~F~CPf--C~~~ 31 (92)
..=++.|.|++ |+..
T Consensus 22 ~sGEKPYkC~~~~CgKa 38 (73)
T 1x3c_A 22 YSPYRPYRCVHQGCFAA 38 (73)
T ss_dssp SCSSCSCBCCSTTCCCB
T ss_pred ccCCCCeECCCCCcChh
Confidence 34478999976 9963
No 180
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.62 E-value=4.6 Score=20.32 Aligned_cols=11 Identities=27% Similarity=0.806 Sum_probs=8.7
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2ytg_A 10 EKPFKCGECGK 20 (46)
T ss_dssp CCSEECTTTCC
T ss_pred CCCeECCCCCc
Confidence 45699999985
No 181
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.62 E-value=4.7 Score=20.32 Aligned_cols=11 Identities=18% Similarity=0.764 Sum_probs=8.8
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eq0_A 10 EKPYKCHECGK 20 (46)
T ss_dssp CCCEECTTTCC
T ss_pred CCCeECCCCCc
Confidence 45699999985
No 182
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.56 E-value=5 Score=20.27 Aligned_cols=11 Identities=18% Similarity=0.951 Sum_probs=8.8
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2em6_A 10 EKCYKCDVCGK 20 (46)
T ss_dssp CCCCBCSSSCC
T ss_pred CCCeECCCCCc
Confidence 45799999985
No 183
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=52.51 E-value=4.9 Score=29.34 Aligned_cols=52 Identities=13% Similarity=0.292 Sum_probs=35.5
Q ss_pred CCCCeEEEEeecCCceEEEEcCc-cCCeeE-eecCCCCc-chhhhhhHHHHHHhhc
Q 034538 29 NHGTSVECRIDMKNLIGEAICNI-CQESFS-TTITALTE-PIDIYSEWIDECERVN 81 (92)
Q Consensus 29 ~~~~sV~vkidk~~~~g~l~C~~-Cg~~~~-~~i~~L~e-pVDVYs~WiD~~~~~n 81 (92)
|..+.+...+++ .|+....|.. ||..+. |.+.-... +-+-|..|+.......
T Consensus 78 Gr~n~l~~~~~~-pG~y~g~CsE~CG~~Hs~M~~~v~vv~~~~~F~~Wl~~~~~~~ 132 (205)
T 1cyx_A 78 GMQTRLHLIANE-PGTYDGICAEICGPGHSGMKFKAIATPDRAAFDQWVAKAKQSP 132 (205)
T ss_dssp TCCEEEEECCSS-SEEEEEEECSCCSTTSTTCCEEEEEESSHHHHHHHHHHHHTCS
T ss_pred CceEEEEEEeCC-CeEEEEEcccccccchhhceEEEEEECCHHHHHHHHHHhhhcc
Confidence 344556665543 5788899986 999875 45554445 5688999998766543
No 184
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.47 E-value=5.1 Score=20.08 Aligned_cols=11 Identities=18% Similarity=0.770 Sum_probs=9.0
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ytr_A 10 EKPYKCNECGK 20 (46)
T ss_dssp CCTTCCTTTCC
T ss_pred CcCcCCCCCCC
Confidence 46799999986
No 185
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.36 E-value=4.6 Score=20.33 Aligned_cols=11 Identities=18% Similarity=0.782 Sum_probs=8.6
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2em7_A 10 EKPYKCEECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CcCccCCCccc
Confidence 45699999985
No 186
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=52.22 E-value=4.7 Score=17.54 Aligned_cols=7 Identities=29% Similarity=1.402 Sum_probs=3.4
Q ss_pred ccCCCCC
Q 034538 23 FSCPFCN 29 (92)
Q Consensus 23 F~CPfC~ 29 (92)
|.|+.|+
T Consensus 2 ~~C~~C~ 8 (27)
T 1znf_A 2 YKCGLCE 8 (27)
T ss_dssp CBCSSSC
T ss_pred ccCCCCC
Confidence 4455554
No 187
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.12 E-value=4.7 Score=20.37 Aligned_cols=11 Identities=18% Similarity=0.770 Sum_probs=8.6
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eoo_A 10 ERPYGCNECGK 20 (46)
T ss_dssp CCCEECSSSCC
T ss_pred CCCEEccccCc
Confidence 45789999885
No 188
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=52.03 E-value=4.6 Score=21.10 Aligned_cols=39 Identities=10% Similarity=0.317 Sum_probs=20.7
Q ss_pred CccccCCCCCCCCeEEEEeec----CCceEEEEcCccCCeeEe
Q 034538 20 DTVFSCPFCNHGTSVECRIDM----KNLIGEAICNICQESFST 58 (92)
Q Consensus 20 ~~~F~CPfC~~~~sV~vkidk----~~~~g~l~C~~Cg~~~~~ 58 (92)
++.|.|+.|+..-+-.-.+.. -.+.-...|..|+..|..
T Consensus 2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 2 SSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQ 44 (57)
T ss_dssp ---CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESS
T ss_pred CCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCC
Confidence 357999999963111111100 112234789999998864
No 189
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.01 E-value=4.8 Score=20.26 Aligned_cols=11 Identities=18% Similarity=0.779 Sum_probs=8.6
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2emy_A 10 ENPYECHECGK 20 (46)
T ss_dssp SCCEECSSSCC
T ss_pred CcCcCCCCCCc
Confidence 45799999985
No 190
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=51.89 E-value=4.6 Score=20.26 Aligned_cols=11 Identities=18% Similarity=0.667 Sum_probs=8.6
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2el4_A 10 VKPYGCSQCAK 20 (46)
T ss_dssp CCSEECSSSSC
T ss_pred CCceECCCCCc
Confidence 45699999985
No 191
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.86 E-value=4.9 Score=20.17 Aligned_cols=11 Identities=18% Similarity=0.685 Sum_probs=8.7
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2en8_A 10 EKSHTCDECGK 20 (46)
T ss_dssp CSSEECTTTCC
T ss_pred CCCeECCCcCc
Confidence 45799999985
No 192
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.70 E-value=5.3 Score=19.95 Aligned_cols=11 Identities=27% Similarity=0.616 Sum_probs=8.8
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (44)
T 2eou_A 10 KTTSECQECGK 20 (44)
T ss_dssp SCCCCCTTTCC
T ss_pred CcCeECCCCCc
Confidence 45799999986
No 193
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=51.36 E-value=5 Score=20.19 Aligned_cols=11 Identities=18% Similarity=0.764 Sum_probs=8.7
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ema_A 10 EKRYKCNECGK 20 (46)
T ss_dssp SCCEECSSSCC
T ss_pred CcCcCCCCCcc
Confidence 45799999985
No 194
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.25 E-value=5 Score=20.26 Aligned_cols=11 Identities=27% Similarity=0.776 Sum_probs=8.5
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2emf_A 10 GKHFECTECGK 20 (46)
T ss_dssp SCCEECSSSCC
T ss_pred CCCeECCCCCc
Confidence 45699999985
No 195
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.18 E-value=5.4 Score=20.13 Aligned_cols=11 Identities=18% Similarity=0.818 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ytq_A 10 EKPYGCSECGK 20 (46)
T ss_dssp CCSCBCSSSCC
T ss_pred CCCcCCCccCh
Confidence 45799999985
No 196
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=51.11 E-value=6 Score=27.35 Aligned_cols=24 Identities=33% Similarity=0.728 Sum_probs=16.5
Q ss_pred ccCCCCCCCCeEEEEeecCCceEEEEcCccCC
Q 034538 23 FSCPFCNHGTSVECRIDMKNLIGEAICNICQE 54 (92)
Q Consensus 23 F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~ 54 (92)
|.||.|+..... . ...+.|..|+.
T Consensus 3 ~~Cp~C~~~~~~------~--~~~~~C~~~~~ 26 (269)
T 1p91_A 3 FSCPLCHQPLSR------E--KNSYICPQRHQ 26 (269)
T ss_dssp BBCTTTCCBCEE------E--TTEEECTTCCE
T ss_pred ccCCCCCcccee------C--CCEEECCCCCc
Confidence 899999874322 1 13688999874
No 197
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.10 E-value=5 Score=20.20 Aligned_cols=11 Identities=18% Similarity=0.770 Sum_probs=8.8
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2yu8_A 10 EKPYKCNECGK 20 (46)
T ss_dssp CSSEECSSSCC
T ss_pred CCCeECCcCCc
Confidence 46799999985
No 198
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.05 E-value=5.8 Score=20.09 Aligned_cols=11 Identities=18% Similarity=0.570 Sum_probs=8.9
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2eom_A 10 ERGHRCSDCGK 20 (46)
T ss_dssp CSSCCCSSSCC
T ss_pred CCCcCCCCCCC
Confidence 45799999986
No 199
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.04 E-value=5.1 Score=20.08 Aligned_cols=11 Identities=18% Similarity=0.806 Sum_probs=8.4
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2eor_A 10 EKPYNCEECGK 20 (46)
T ss_dssp CCSEECTTTCC
T ss_pred CcCccCCCCCC
Confidence 45688988885
No 200
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=51.00 E-value=5.1 Score=21.17 Aligned_cols=11 Identities=27% Similarity=0.893 Sum_probs=8.8
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 22 ~k~~~C~~C~k 32 (54)
T 1yui_A 22 EQPATCPICYA 32 (54)
T ss_dssp SCCEECTTTCC
T ss_pred CCCccCCCCCc
Confidence 46799999985
No 201
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=50.97 E-value=5 Score=21.69 Aligned_cols=11 Identities=45% Similarity=1.247 Sum_probs=8.3
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 38 ~~~~~C~~C~k 48 (66)
T 2drp_A 38 VKVYPCPFCFK 48 (66)
T ss_dssp CCCEECTTTCC
T ss_pred CcCeECCCCCC
Confidence 45688888885
No 202
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.83 E-value=5.1 Score=20.22 Aligned_cols=11 Identities=18% Similarity=0.552 Sum_probs=8.7
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2em5_A 10 TKSHQCHECGR 20 (46)
T ss_dssp SCSEECSSSCC
T ss_pred CCCeECCcCCC
Confidence 45799999985
No 203
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.58 E-value=5.1 Score=20.15 Aligned_cols=11 Identities=27% Similarity=0.839 Sum_probs=8.6
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2enc_A 10 EKPFKCEECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCcCCCCCCC
Confidence 45799999985
No 204
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.54 E-value=5.6 Score=20.07 Aligned_cols=11 Identities=18% Similarity=0.812 Sum_probs=9.0
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ytt_A 10 EKPYQCSECGK 20 (46)
T ss_dssp CCTTCCSSSCC
T ss_pred CCCeeCCCCCc
Confidence 45799999986
No 205
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.46 E-value=4.2 Score=20.28 Aligned_cols=11 Identities=18% Similarity=0.751 Sum_probs=8.2
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (44)
T 2eox_A 10 SKSYNCNECGK 20 (44)
T ss_dssp CCCEEETTTTE
T ss_pred CCCeECcccCc
Confidence 45688888874
No 206
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.38 E-value=5.2 Score=20.20 Aligned_cols=11 Identities=18% Similarity=0.742 Sum_probs=8.7
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2em8_A 10 EKPYKCVECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCeECcccCc
Confidence 45799999985
No 207
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.37 E-value=5.6 Score=20.05 Aligned_cols=11 Identities=18% Similarity=0.763 Sum_probs=9.0
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2elz_A 10 EKPYKCEDCGK 20 (46)
T ss_dssp CSSCBCSSSCC
T ss_pred CCCeeCcccCc
Confidence 45799999986
No 208
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.15 E-value=5.3 Score=20.10 Aligned_cols=11 Identities=18% Similarity=0.555 Sum_probs=8.6
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2emp_A 10 VKPYMCNECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CcCeECCCCCc
Confidence 45699999985
No 209
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=49.97 E-value=19 Score=22.79 Aligned_cols=28 Identities=32% Similarity=0.840 Sum_probs=13.7
Q ss_pred ccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEe
Q 034538 23 FSCPFCNHGTSVECRIDMKNLIGEAICNICQESFST 58 (92)
Q Consensus 23 F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 58 (92)
..||-|+++- ....+ ...|..|+..|..
T Consensus 3 ~~CP~C~~~l------~~~~~--~~~C~~C~~~~~~ 30 (81)
T 2jrp_A 3 ITCPVCHHAL------ERNGD--TAHCETCAKDFSL 30 (81)
T ss_dssp CCCSSSCSCC------EECSS--EEECTTTCCEEEE
T ss_pred CCCCCCCCcc------ccCCC--ceECccccccCCC
Confidence 3567776642 11222 3346666665543
No 210
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.75 E-value=6.2 Score=19.73 Aligned_cols=11 Identities=27% Similarity=0.742 Sum_probs=8.7
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 8 ~k~~~C~~C~k 18 (43)
T 2yrm_A 8 NGAFFCNECDC 18 (43)
T ss_dssp SCCBCCSSSCC
T ss_pred CCCEECCCCCC
Confidence 45699999986
No 211
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.71 E-value=5.3 Score=19.89 Aligned_cols=11 Identities=27% Similarity=0.984 Sum_probs=8.1
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 8 ~k~~~C~~C~k 18 (44)
T 2emx_A 8 EKPFGCSCCEK 18 (44)
T ss_dssp CCCEECSSSSC
T ss_pred CcCccCCCCCc
Confidence 45688888885
No 212
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.62 E-value=5.5 Score=20.16 Aligned_cols=11 Identities=18% Similarity=0.724 Sum_probs=8.8
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ytm_A 10 EKPYKCMECGK 20 (46)
T ss_dssp CCSSSBTTTTB
T ss_pred CCCcCCCCCCc
Confidence 45699999985
No 213
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.49 E-value=5.5 Score=20.01 Aligned_cols=11 Identities=18% Similarity=0.770 Sum_probs=8.6
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2ytk_A 10 EKPYKCNECGK 20 (46)
T ss_dssp SCSEECSSSCC
T ss_pred CCCEeCCcCCC
Confidence 45789999885
No 214
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=49.47 E-value=5.3 Score=20.16 Aligned_cols=11 Identities=18% Similarity=0.706 Sum_probs=8.8
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2el6_A 10 VNPYKCSQCEK 20 (46)
T ss_dssp CCSEECSSSSC
T ss_pred CCCeECCCCCc
Confidence 45699999985
No 215
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=49.45 E-value=2.2 Score=24.98 Aligned_cols=38 Identities=13% Similarity=0.312 Sum_probs=22.8
Q ss_pred ccccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEeecCC
Q 034538 21 TVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITA 62 (92)
Q Consensus 21 ~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~ 62 (92)
+.|.|..||++-| -+.-+..-.+.|-.||.+--+++.+
T Consensus 2 ~iY~C~rCg~~fs----~~el~~lP~IrCpyCGyrii~KvR~ 39 (48)
T 4ayb_P 2 AVYRCGKCWKTFT----DEQLKVLPGVRCPYCGYKIIFMVRK 39 (48)
T ss_dssp ---CCCCTTTTCC----CCCSCCCSSSCCTTTCCSCEECCCC
T ss_pred cEEEeeccCCCcc----HHHHhhCCCcccCccCcEEEEEecC
Confidence 3688999998532 1222344668899999876665543
No 216
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.32 E-value=5.5 Score=19.94 Aligned_cols=11 Identities=18% Similarity=0.603 Sum_probs=8.5
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2emm_A 10 ERPHKCNECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCeeCCCCCh
Confidence 45688999885
No 217
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=49.08 E-value=5.5 Score=22.71 Aligned_cols=37 Identities=19% Similarity=0.431 Sum_probs=23.6
Q ss_pred CccccCCCCCCCCeEEEEeecC------CceEEEEcCccCCeeEe
Q 034538 20 DTVFSCPFCNHGTSVECRIDMK------NLIGEAICNICQESFST 58 (92)
Q Consensus 20 ~~~F~CPfC~~~~sV~vkidk~------~~~g~l~C~~Cg~~~~~ 58 (92)
++.|.|+.||. +..-.-... .+.-.-.|..||..|..
T Consensus 2 EKpy~C~~C~k--~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 2 ERPFFCNFCGK--TYRDASGLSRHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp CCCEECTTTCC--EESSHHHHHHHHHHHHTCCCEECTTTCCEESS
T ss_pred CCCccCCCCCC--EeCCHHHHHHHHHHhCCCcCeECCCCCCCcCC
Confidence 57899999996 222111111 23345789999999864
No 218
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.76 E-value=5.7 Score=19.96 Aligned_cols=11 Identities=18% Similarity=0.809 Sum_probs=8.6
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ytd_A 10 EKPYKCSECGK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CcCeECCCCCC
Confidence 45699999985
No 219
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=48.46 E-value=4.8 Score=21.65 Aligned_cols=8 Identities=50% Similarity=1.153 Sum_probs=6.5
Q ss_pred cccCCCCC
Q 034538 22 VFSCPFCN 29 (92)
Q Consensus 22 ~F~CPfC~ 29 (92)
-|.||.|-
T Consensus 5 GFiCP~C~ 12 (34)
T 3mjh_B 5 GFICPQCM 12 (34)
T ss_dssp EEECTTTC
T ss_pred ccCCcHHH
Confidence 38999995
No 220
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.09 E-value=4.8 Score=20.26 Aligned_cols=11 Identities=18% Similarity=0.800 Sum_probs=8.4
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~k~~~C~~C~k 20 (46)
T 2ysp_A 10 EKPYKCEKCGK 20 (46)
T ss_dssp CCSEEETTTTE
T ss_pred CCCeECCCCCC
Confidence 45688999884
No 221
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=47.93 E-value=6.1 Score=20.60 Aligned_cols=10 Identities=20% Similarity=0.959 Sum_probs=6.6
Q ss_pred ccccCCCCCC
Q 034538 21 TVFSCPFCNH 30 (92)
Q Consensus 21 ~~F~CPfC~~ 30 (92)
+.|.|+.|+.
T Consensus 6 kp~~C~~C~k 15 (48)
T 3iuf_A 6 KPYACDICGK 15 (48)
T ss_dssp SCEECTTTCC
T ss_pred cCEECCCcCc
Confidence 4577777764
No 222
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.98 E-value=6.3 Score=19.78 Aligned_cols=11 Identities=18% Similarity=0.921 Sum_probs=8.7
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2ep0_A 10 EKPYKCDVCHK 20 (46)
T ss_dssp CCSEECSSSCC
T ss_pred CCCeeCcccCc
Confidence 45799999985
No 223
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=46.87 E-value=10 Score=29.16 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=35.9
Q ss_pred CCCCeEEEEeecCCceEEEEcCc-cCCeeE-eecCCCCc-chhhhhhHHHHHHhhcC
Q 034538 29 NHGTSVECRIDMKNLIGEAICNI-CQESFS-TTITALTE-PIDIYSEWIDECERVNN 82 (92)
Q Consensus 29 ~~~~sV~vkidk~~~~g~l~C~~-Cg~~~~-~~i~~L~e-pVDVYs~WiD~~~~~n~ 82 (92)
|..+.+....++ .|+....|.. ||..+. |.+.-... +-+-|..|++...+...
T Consensus 188 Gr~n~~~~~~~~-~G~y~g~CsE~CG~~Hs~M~~~v~vv~~~~~F~~Wl~~~~~~~~ 243 (315)
T 1fft_B 188 GMQTRLHLIANE-PGTYDGISASYSGPGFSGMKFKAIATPDRAAFDQWVAKAKQSPN 243 (315)
T ss_dssp TSCEEEEEECCS-CBCCEEBCCSCCSTTTTTCCEECCBCSSTHHHHHHHHHHHHCSC
T ss_pred CcceeeEEecCC-CeEEEEeccccchhhHHhccceEEEecCHHHHHHHHHHHHhcCC
Confidence 344556665543 4677889986 999875 45554444 56889999988776543
No 224
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=46.45 E-value=7.6 Score=22.40 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=12.5
Q ss_pred CCCCccccCCCCCCCC
Q 034538 17 DKLDTVFSCPFCNHGT 32 (92)
Q Consensus 17 ~kl~~~F~CPfC~~~~ 32 (92)
..++..|.||.|...-
T Consensus 3 ~~~~~~~~C~IC~~~~ 18 (78)
T 1t1h_A 3 PEFPEYFRCPISLELM 18 (78)
T ss_dssp CCCSSSSSCTTTSCCC
T ss_pred cCCcccCCCCCccccc
Confidence 3578899999998743
No 225
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=46.40 E-value=6.7 Score=24.88 Aligned_cols=34 Identities=21% Similarity=0.496 Sum_probs=24.1
Q ss_pred cccCCCCCCCCeEEEEeec-CCceEEEEcCccCCeeEe
Q 034538 22 VFSCPFCNHGTSVECRIDM-KNLIGEAICNICQESFST 58 (92)
Q Consensus 22 ~F~CPfC~~~~sV~vkidk-~~~~g~l~C~~Cg~~~~~ 58 (92)
.+.|| || +...+..+- ..+--.+.|..|.+.-.-
T Consensus 23 ~ypCr-CG--d~F~it~edL~~ge~iv~C~sCSL~I~V 57 (83)
T 1yop_A 23 TYPCP-CG--DRFQIYLDDMFEGEKVAVCPSCSLMIDV 57 (83)
T ss_dssp EEEET-TT--EEEEEEHHHHHTTCCEEECSSSCCEEEC
T ss_pred EEeCC-CC--CeEEECHHHHhCCCEEEECCCCccEEEE
Confidence 46899 99 567777643 345568999999985443
No 226
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.27 E-value=6.7 Score=19.66 Aligned_cols=11 Identities=18% Similarity=0.634 Sum_probs=8.4
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2yso_A 10 EKSHQCRECGE 20 (46)
T ss_dssp CCCEECTTTCC
T ss_pred CCCEEccccCh
Confidence 45689999885
No 227
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=46.15 E-value=28 Score=22.84 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=27.9
Q ss_pred ccccCCCCCCC----CeEEEEeecCC-ceEEEEcCccCCeeEeecC
Q 034538 21 TVFSCPFCNHG----TSVECRIDMKN-LIGEAICNICQESFSTTIT 61 (92)
Q Consensus 21 ~~F~CPfC~~~----~sV~vkidk~~-~~g~l~C~~Cg~~~~~~i~ 61 (92)
+.+-|..|+.- .+..|.|.... ..-.+.|..||-...+++.
T Consensus 64 KR~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~p~~ 109 (120)
T 1x0t_A 64 KRRYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRYPYL 109 (120)
T ss_dssp TTSBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEEECC
T ss_pred HHHhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEccC
Confidence 56689999862 23556665432 2578899999987766654
No 228
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=46.11 E-value=6.4 Score=20.50 Aligned_cols=10 Identities=30% Similarity=1.158 Sum_probs=7.3
Q ss_pred ccccCCCCCC
Q 034538 21 TVFSCPFCNH 30 (92)
Q Consensus 21 ~~F~CPfC~~ 30 (92)
+.|.|+.|+.
T Consensus 28 ~~~~C~~C~~ 37 (57)
T 1bbo_A 28 RPYHCTYCNF 37 (57)
T ss_dssp CCEECSSSSC
T ss_pred CCccCCCCCc
Confidence 4588888874
No 229
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.50 E-value=5.7 Score=19.96 Aligned_cols=11 Identities=18% Similarity=0.779 Sum_probs=8.4
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2en6_A 10 EKPYGCNECGK 20 (46)
T ss_dssp SCCEEETTTTE
T ss_pred CcCeECCCCCc
Confidence 45688998884
No 230
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=45.25 E-value=6.4 Score=24.85 Aligned_cols=8 Identities=38% Similarity=1.290 Sum_probs=5.9
Q ss_pred cCCCCCCC
Q 034538 24 SCPFCNHG 31 (92)
Q Consensus 24 ~CPfC~~~ 31 (92)
.||.||.+
T Consensus 49 ~CPvCgs~ 56 (112)
T 1l8d_A 49 KCPVCGRE 56 (112)
T ss_dssp ECTTTCCE
T ss_pred CCCCCCCc
Confidence 48888863
No 231
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.02 E-value=5.8 Score=19.86 Aligned_cols=11 Identities=18% Similarity=0.770 Sum_probs=8.6
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2eoe_A 10 EKPYKCNECGK 20 (46)
T ss_dssp CCSSEETTTTE
T ss_pred CCCeECCCcCh
Confidence 45699999985
No 232
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.00 E-value=5.8 Score=19.94 Aligned_cols=11 Identities=27% Similarity=0.839 Sum_probs=8.4
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 10 ~~~~~C~~C~k 20 (46)
T 2en1_A 10 EKPFKCEECGK 20 (46)
T ss_dssp CCSEEETTTTE
T ss_pred CCCeeCCCCCc
Confidence 45688998884
No 233
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=44.69 E-value=14 Score=21.12 Aligned_cols=44 Identities=14% Similarity=0.229 Sum_probs=28.1
Q ss_pred ccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEeecCCCCc-chhhhhhHH
Q 034538 23 FSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTE-PIDIYSEWI 74 (92)
Q Consensus 23 F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~e-pVDVYs~Wi 74 (92)
-.||+|+... .....-|.|..|..-|...--.|++ +++...+|+
T Consensus 7 ~~C~~C~~~~--------~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~ 51 (64)
T 1we9_A 7 GQCGACGESY--------AADEFWICCDLCEMWFHGKCVKITPARAEHIKQYK 51 (64)
T ss_dssp CCCSSSCCCC--------CSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCC
T ss_pred CCCCCCCCcc--------CCCCCEEEccCCCCCCCccccCcChhHhcCCCcEE
Confidence 4599998742 1233468899999999987555544 344344554
No 234
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=43.57 E-value=8.2 Score=20.39 Aligned_cols=11 Identities=9% Similarity=0.265 Sum_probs=8.1
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 39 ~k~~~C~~C~k 49 (54)
T 2eps_A 39 ERPHKCQVWVS 49 (54)
T ss_dssp CCCCCSSSSCC
T ss_pred CCCccCCCCCC
Confidence 45688888875
No 235
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=42.89 E-value=10 Score=25.28 Aligned_cols=34 Identities=18% Similarity=0.379 Sum_probs=20.7
Q ss_pred cccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEe
Q 034538 22 VFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFST 58 (92)
Q Consensus 22 ~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 58 (92)
.+.|| ||.. ..+..+--...-.+.|..|.+.|.-
T Consensus 112 ~~~Cr-CG~~--f~i~~~~l~~~~~v~C~sCSl~~~v 145 (155)
T 2l6l_A 112 YLSCR-CGGK--YSVSKDEAEEVSLISCDTCSLIIEL 145 (155)
T ss_dssp EEECS-SSCE--EEEETTHHHHCCEEECSSSSCEEEE
T ss_pred EEcCC-CCCe--EEecHHHhCCCCEEECCCCceEEEE
Confidence 36798 9953 4433322111147899999998764
No 236
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=42.33 E-value=8.1 Score=21.61 Aligned_cols=39 Identities=13% Similarity=0.425 Sum_probs=22.3
Q ss_pred CccccCCCCCCCCeEEEEeec------CCceEEEEcCccCCeeEe
Q 034538 20 DTVFSCPFCNHGTSVECRIDM------KNLIGEAICNICQESFST 58 (92)
Q Consensus 20 ~~~F~CPfC~~~~sV~vkidk------~~~~g~l~C~~Cg~~~~~ 58 (92)
++.|.|+.|+..=+-.-.+.. ........|..|+..|..
T Consensus 13 ~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~ 57 (77)
T 2ct1_A 13 EKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIAR 57 (77)
T ss_dssp CCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESS
T ss_pred CCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCC
Confidence 567999999962110000100 111234789999998864
No 237
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=42.24 E-value=2.5 Score=25.32 Aligned_cols=26 Identities=23% Similarity=0.557 Sum_probs=18.2
Q ss_pred CCCccccCCCCCCCCeEEEEeecCCceEEEEcCccCC
Q 034538 18 KLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQE 54 (92)
Q Consensus 18 kl~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~ 54 (92)
..|..-.||.||.. ++ .+-.|..||.
T Consensus 26 ~~p~l~~c~~cGe~-----~~------~H~vc~~CG~ 51 (60)
T 3v2d_5 26 TPPTLVPCPECKAM-----KP------PHTVCPECGY 51 (60)
T ss_dssp CCCCCEECTTTCCE-----EC------TTSCCTTTCE
T ss_pred cCCceeECCCCCCe-----ec------ceEEcCCCCc
Confidence 46889999999961 22 2335888883
No 238
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=42.05 E-value=10 Score=24.51 Aligned_cols=28 Identities=18% Similarity=0.462 Sum_probs=21.1
Q ss_pred cCCCCCCCCeEEEEeecCCceEEEEcCccCCee
Q 034538 24 SCPFCNHGTSVECRIDMKNLIGEAICNICQESF 56 (92)
Q Consensus 24 ~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~ 56 (92)
.||-|++ +.+.+.... ..+.|.+||..-
T Consensus 38 kCp~C~~---~~~VFShA~--t~V~C~~CgtvL 65 (86)
T 3iz6_X 38 KCQGCFN---ITTVFSHSQ--TVVVCPGCQTVL 65 (86)
T ss_dssp ECTTTCC---EEEEETTCS--SCCCCSSSCCCC
T ss_pred ECCCCCC---eeEEEecCC--cEEEccCCCCEe
Confidence 7999998 566675554 568999999753
No 239
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=41.99 E-value=8.3 Score=21.17 Aligned_cols=9 Identities=44% Similarity=1.209 Sum_probs=4.1
Q ss_pred EcCccCCee
Q 034538 48 ICNICQESF 56 (92)
Q Consensus 48 ~C~~Cg~~~ 56 (92)
.|..||..|
T Consensus 51 ~C~~C~~~f 59 (73)
T 1f2i_G 51 QCRICMRNF 59 (73)
T ss_dssp ECTTTCCEE
T ss_pred ECCCCCchh
Confidence 344444444
No 240
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=41.88 E-value=8.6 Score=26.93 Aligned_cols=9 Identities=22% Similarity=0.700 Sum_probs=5.2
Q ss_pred cccCCCCCC
Q 034538 22 VFSCPFCNH 30 (92)
Q Consensus 22 ~F~CPfC~~ 30 (92)
.+.|+.||+
T Consensus 155 ~~~C~~CG~ 163 (191)
T 1lko_A 155 KWRCRNCGY 163 (191)
T ss_dssp EEEETTTCC
T ss_pred eEEECCCCC
Confidence 455666655
No 241
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=41.79 E-value=8.3 Score=21.35 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=23.1
Q ss_pred CCccccCCCCCCCCeEEEEee----cCCceEEEEcCccCCeeEe
Q 034538 19 LDTVFSCPFCNHGTSVECRID----MKNLIGEAICNICQESFST 58 (92)
Q Consensus 19 l~~~F~CPfC~~~~sV~vkid----k~~~~g~l~C~~Cg~~~~~ 58 (92)
-++.|.|+.|+..-+-.-.+. .-.+.-...|..|+..|..
T Consensus 11 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~ 54 (72)
T 1x6e_A 11 GEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQ 54 (72)
T ss_dssp TCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESS
T ss_pred CCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCC
Confidence 356899999996211000010 0122334789999998864
No 242
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=41.15 E-value=18 Score=22.89 Aligned_cols=31 Identities=19% Similarity=0.412 Sum_probs=23.0
Q ss_pred cccCCCCCCCCeEEEEeecC---------CceEEEEcCccCCeeEe
Q 034538 22 VFSCPFCNHGTSVECRIDMK---------NLIGEAICNICQESFST 58 (92)
Q Consensus 22 ~F~CPfC~~~~sV~vkidk~---------~~~g~l~C~~Cg~~~~~ 58 (92)
.|+|-.||. .|.+. .+-..++|--|+..|.-
T Consensus 10 ~F~C~~Cgd------~lKK~kv~~H~~~Cr~~~~~SCIDC~~~F~~ 49 (79)
T 1wjv_A 10 FFTCNACGE------SVKKIQVEKHVSNCRNCECLSCIDCGKDFWG 49 (79)
T ss_dssp EEEESSSCC------EEETTHHHHHHHHCTTCCEEEETTTTEEEEG
T ss_pred EEEcCCCCC------eeecccchhHHhhCCCCCcEEecccCCeeCC
Confidence 699999995 23331 34468999999999974
No 243
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=40.74 E-value=9.1 Score=28.09 Aligned_cols=33 Identities=18% Similarity=0.440 Sum_probs=20.7
Q ss_pred ccccCCCCCCCCeEEEEeecCCceEEEEcCccCCe
Q 034538 21 TVFSCPFCNHGTSVECRIDMKNLIGEAICNICQES 55 (92)
Q Consensus 21 ~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~ 55 (92)
..|.|+.||+. +.+..+...-.--..|..|+..
T Consensus 133 ~~f~C~~C~~~--~~v~~~~~~~~~P~~Cp~C~~~ 165 (279)
T 1ltl_A 133 AVFECRGCMRH--HAVTQSTNMITEPSLCSECGGR 165 (279)
T ss_dssp EEEEETTTCCE--EEEECSSSSCCCCSCCTTTCCC
T ss_pred EEEEcCCCCCE--EEEEecCCcccCCCcCCCCCCC
Confidence 57999999985 4444432211112479999975
No 244
>3hpw_C Protein CCDA; alpha+beta, SH3 domain, intrinsically disordered, toxin/toxin repressor complex; 1.45A {Escherichia coli} PDB: 3g7z_C 3tcj_T
Probab=39.33 E-value=9 Score=20.74 Aligned_cols=12 Identities=17% Similarity=0.285 Sum_probs=10.2
Q ss_pred cchhhhhhHHHH
Q 034538 65 EPIDIYSEWIDE 76 (92)
Q Consensus 65 epVDVYs~WiD~ 76 (92)
++|+.|++||+.
T Consensus 14 ~ai~~~N~~ve~ 25 (36)
T 3hpw_C 14 EGMAEVARFIEM 25 (36)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 578999999975
No 245
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=38.83 E-value=17 Score=23.38 Aligned_cols=35 Identities=26% Similarity=0.592 Sum_probs=26.5
Q ss_pred CccccC-----CCCCCCCeEEEEeecCCceEEEEcCccCCeeEee
Q 034538 20 DTVFSC-----PFCNHGTSVECRIDMKNLIGEAICNICQESFSTT 59 (92)
Q Consensus 20 ~~~F~C-----PfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~ 59 (92)
.+.+.| |+ +|.. |-+.|++. |.+.|.=||..|...
T Consensus 22 ~~~v~CdG~~~pl-gHPr-VyL~i~~~---g~~~CpYCg~~y~~~ 61 (87)
T 2jz8_A 22 VKEFMCVGATQPF-DHPH-IFIDMGST---DEKICPYCSTLYRYD 61 (87)
T ss_dssp CSEEECCCSSCSS-SSSS-CEEECTTC---CEECCTTTCCEEECC
T ss_pred CcEEEcCCCCCCC-CCCE-EEEEcCCC---CeEECCCCCCEeEcC
Confidence 345666 34 7876 88888663 889999999999764
No 246
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.74 E-value=9.8 Score=21.22 Aligned_cols=37 Identities=14% Similarity=0.451 Sum_probs=22.4
Q ss_pred CccccCCCCCCCCeEEEE--eec----CC---ceEEEEcCccCCeeEe
Q 034538 20 DTVFSCPFCNHGTSVECR--IDM----KN---LIGEAICNICQESFST 58 (92)
Q Consensus 20 ~~~F~CPfC~~~~sV~vk--idk----~~---~~g~l~C~~Cg~~~~~ 58 (92)
++.|.|+.|+.. ..-. +.+ -. +.-...|..|+..|..
T Consensus 5 ~k~~~C~~C~k~--f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~ 50 (78)
T 2d9h_A 5 SSGLQCEICGFT--CRQKASLNWHQRKHAETVAALRFPCEFCGKRFEK 50 (78)
T ss_dssp CCCEECSSSCCE--ESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESS
T ss_pred CcCeECCCCCCe--eCCHHHHHHHHHHhhccCCCcccCCCCCCchhCC
Confidence 467999999962 2111 100 01 1235789999998864
No 247
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=38.64 E-value=12 Score=16.89 Aligned_cols=10 Identities=30% Similarity=0.840 Sum_probs=6.5
Q ss_pred ccccCC--CCCC
Q 034538 21 TVFSCP--FCNH 30 (92)
Q Consensus 21 ~~F~CP--fC~~ 30 (92)
+.|.|+ .|+.
T Consensus 2 k~~~C~~~~C~k 13 (32)
T 1zfd_A 2 RPYSCDHPGCDK 13 (32)
T ss_dssp CSBCCCCTTCCC
T ss_pred CCCcCcCCCCCC
Confidence 457777 6764
No 248
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A
Probab=38.40 E-value=16 Score=25.38 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=12.0
Q ss_pred CceEEEEcCccCCe
Q 034538 42 NLIGEAICNICQES 55 (92)
Q Consensus 42 ~~~g~l~C~~Cg~~ 55 (92)
...|.|.|+.||+.
T Consensus 65 ~~~g~I~C~~Cgq~ 78 (145)
T 3eqt_A 65 KPGGVISCRNCGEV 78 (145)
T ss_dssp EEEEEEEETTTCCE
T ss_pred cCCcEEEchhhChh
Confidence 35699999999986
No 249
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=38.03 E-value=3.5 Score=26.63 Aligned_cols=9 Identities=56% Similarity=1.409 Sum_probs=7.5
Q ss_pred cccCCCCCC
Q 034538 22 VFSCPFCNH 30 (92)
Q Consensus 22 ~F~CPfC~~ 30 (92)
-|+||+|.+
T Consensus 30 dy~Cp~C~~ 38 (184)
T 4dvc_A 30 SFYCPHCNT 38 (184)
T ss_dssp CTTCHHHHH
T ss_pred CCCCHhHHH
Confidence 489999975
No 250
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=37.00 E-value=16 Score=24.08 Aligned_cols=26 Identities=19% Similarity=0.461 Sum_probs=19.1
Q ss_pred CccccCCCCCCCCeEEEEeecCCceEEEEcCccCC
Q 034538 20 DTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQE 54 (92)
Q Consensus 20 ~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~ 54 (92)
.+...||.||. .+. -+++. .|+.||.
T Consensus 14 KtH~lCrRCG~-~sf--H~qK~------~CgkCGY 39 (97)
T 2zkr_2 14 KTHTLCRRCGS-KAY--HLQKS------TCGKCGY 39 (97)
T ss_dssp CCEECCTTTCS-SCE--ETTSC------CBTTTCT
T ss_pred CCCCcCCCCCC-ccC--cCccc------cCcccCC
Confidence 46788999997 455 33433 8999995
No 251
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=36.73 E-value=11 Score=21.56 Aligned_cols=38 Identities=18% Similarity=0.456 Sum_probs=22.7
Q ss_pred CccccCCCCCCCCeEEEE--eec----CCceEEEEcCccCCeeEee
Q 034538 20 DTVFSCPFCNHGTSVECR--IDM----KNLIGEAICNICQESFSTT 59 (92)
Q Consensus 20 ~~~F~CPfC~~~~sV~vk--idk----~~~~g~l~C~~Cg~~~~~~ 59 (92)
++.|.|+.|+.. ..-. +.. -.+.....|..||..|...
T Consensus 1 ek~~~C~~C~k~--f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~ 44 (88)
T 1llm_C 1 MKPFQCRICMRN--FSRSDHLTTHIRTHTGEKPFACDICGRKFARS 44 (88)
T ss_dssp CCCEECTTTCCE--ESCHHHHHHHHHHHHCCCCEECTTTCCEESSH
T ss_pred CCCCcCCCCCCc--cCCHHHHHHHHHHcCCCCCccCCCCCCccCCH
Confidence 357999999962 2111 100 0122347899999988653
No 252
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=36.70 E-value=13 Score=23.17 Aligned_cols=13 Identities=31% Similarity=0.848 Sum_probs=8.1
Q ss_pred EEEcCc--cCCeeEe
Q 034538 46 EAICNI--CQESFST 58 (92)
Q Consensus 46 ~l~C~~--Cg~~~~~ 58 (92)
...|.. |+..|..
T Consensus 67 ~~~C~~~~C~~~f~~ 81 (155)
T 2gli_A 67 PHKCTFEGCRKSYSR 81 (155)
T ss_dssp CCCCCSTTCCCCCSS
T ss_pred CccCCCCCCCCcccC
Confidence 356764 7776654
No 253
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=36.69 E-value=18 Score=22.09 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=20.5
Q ss_pred CCCCeEEEEeecCCceEEEEcCccCCeeEee
Q 034538 29 NHGTSVECRIDMKNLIGEAICNICQESFSTT 59 (92)
Q Consensus 29 ~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~ 59 (92)
+|+. |-+.||.+ .+.+.|.-||+.|..+
T Consensus 26 gHPr-Vyl~ld~~--~g~~~CpYCg~~f~l~ 53 (67)
T 2jrr_A 26 GHPR-VWLQIPED--TGWVECPYCDCKYVLK 53 (67)
T ss_dssp EEEE-EEEECCTT--TSEEEETTTTEEEEET
T ss_pred CCCE-EEEEccCC--CCeEECCCCCCEEEEC
Confidence 5643 66777543 4778999999999875
No 254
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.55 E-value=12 Score=19.42 Aligned_cols=11 Identities=27% Similarity=0.963 Sum_probs=8.3
Q ss_pred CccccCCC--CCC
Q 034538 20 DTVFSCPF--CNH 30 (92)
Q Consensus 20 ~~~F~CPf--C~~ 30 (92)
++.|.|++ |+.
T Consensus 7 ekp~~C~~~~C~k 19 (38)
T 2eln_A 7 GILLKCPTDGCDY 19 (38)
T ss_dssp CCCEECSSSSCCC
T ss_pred CCCCCCCCCCCCC
Confidence 45799986 985
No 255
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.23 E-value=13 Score=21.77 Aligned_cols=11 Identities=36% Similarity=0.643 Sum_probs=9.3
Q ss_pred ccccCCCCCCC
Q 034538 21 TVFSCPFCNHG 31 (92)
Q Consensus 21 ~~F~CPfC~~~ 31 (92)
+.|.||.||..
T Consensus 11 ~~~~CPrCn~~ 21 (49)
T 2e72_A 11 GRKICPRCNAQ 21 (49)
T ss_dssp SCCCCTTTCCC
T ss_pred CceeCCccccc
Confidence 78999999964
No 256
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=36.15 E-value=5.9 Score=28.75 Aligned_cols=36 Identities=25% Similarity=0.504 Sum_probs=20.8
Q ss_pred CccccCCCCCCCCeEEEEeecCC----ceEEEEcCccCCee
Q 034538 20 DTVFSCPFCNHGTSVECRIDMKN----LIGEAICNICQESF 56 (92)
Q Consensus 20 ~~~F~CPfC~~~~sV~vkidk~~----~~g~l~C~~Cg~~~ 56 (92)
+=.|.||.|+++.... -+.... ...-+.|..|+..+
T Consensus 20 ~l~l~Cp~C~~~~~F~-gv~~~~~~~~~~sg~~C~~C~~~~ 59 (206)
T 3flo_B 20 TLELSCPSCDKRFPFG-GIVSSNYYRVSYNGLQCKHCEQLF 59 (206)
T ss_dssp CEEEECTTTCCEEEEC-SSSCCSSEEEETTEEEETTTCCBC
T ss_pred eeEEECCCCCCccCCC-CcccCCCcccccccccCCCCCCcC
Confidence 3479999999854211 111111 11247899999864
No 257
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=36.00 E-value=11 Score=20.57 Aligned_cols=39 Identities=15% Similarity=0.243 Sum_probs=22.6
Q ss_pred CccccCCCCCCCCeEEEEee----cCCceEEEEcCccCCeeEe
Q 034538 20 DTVFSCPFCNHGTSVECRID----MKNLIGEAICNICQESFST 58 (92)
Q Consensus 20 ~~~F~CPfC~~~~sV~vkid----k~~~~g~l~C~~Cg~~~~~ 58 (92)
++.|.|+.|+..-+-.-.+. .-.+.....|..|+..|..
T Consensus 7 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~ 49 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQ 49 (70)
T ss_dssp CCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESS
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCC
Confidence 46799999996211000010 0122234799999998864
No 258
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=35.57 E-value=11 Score=26.88 Aligned_cols=11 Identities=27% Similarity=0.736 Sum_probs=7.2
Q ss_pred ccCCCCCCCCe
Q 034538 23 FSCPFCNHGTS 33 (92)
Q Consensus 23 F~CPfC~~~~s 33 (92)
..||.|++.++
T Consensus 187 ~~CP~C~~~k~ 197 (202)
T 1yuz_A 187 EKCPICFRPKD 197 (202)
T ss_dssp SBCTTTCCBGG
T ss_pred CCCCCCCCChH
Confidence 56777777543
No 259
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=35.45 E-value=29 Score=27.63 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=20.5
Q ss_pred ccCCCCCCCCeEEEEe------ecCCceEEEEcCccCCeeE
Q 034538 23 FSCPFCNHGTSVECRI------DMKNLIGEAICNICQESFS 57 (92)
Q Consensus 23 F~CPfC~~~~sV~vki------dk~~~~g~l~C~~Cg~~~~ 57 (92)
-.||.|+. +.++.-+ .+.--+-+..|..||.++.
T Consensus 13 s~Cp~C~~-~g~t~~~~~~IP~F~eVii~Sf~C~~CGyrn~ 52 (404)
T 2qkd_A 13 SLCMNCYR-NGTTRLLLTKIPFFREIIVSSFSCEHCGWNNT 52 (404)
T ss_dssp EECTTTSS-EEEEEEEEEEETTTEEEEEEEEECTTTCCEEE
T ss_pred ccCCCCCC-CceEEEEEEcCCCCceEEEEEEECCCCCCchh
Confidence 35999995 3333222 1223456788999997753
No 260
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=34.95 E-value=14 Score=16.62 Aligned_cols=9 Identities=33% Similarity=1.220 Sum_probs=5.3
Q ss_pred cccCC--CCCC
Q 034538 22 VFSCP--FCNH 30 (92)
Q Consensus 22 ~F~CP--fC~~ 30 (92)
.|.|+ .|+.
T Consensus 2 p~~C~~~~C~k 12 (31)
T 1sp2_A 2 PFMCTWSYCGK 12 (31)
T ss_dssp CCBCCSTTCCC
T ss_pred CcCCcCCCCCc
Confidence 46665 6664
No 261
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=34.78 E-value=96 Score=20.34 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=27.6
Q ss_pred ccccCCCCCCC----CeEEEEeecCC-ceEEEEcCccCCeeEeecC
Q 034538 21 TVFSCPFCNHG----TSVECRIDMKN-LIGEAICNICQESFSTTIT 61 (92)
Q Consensus 21 ~~F~CPfC~~~----~sV~vkidk~~-~~g~l~C~~Cg~~~~~~i~ 61 (92)
+..-|..|+.- .+..|.|.... ..-.+.|..||-...+++.
T Consensus 59 KR~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR~p~~ 104 (123)
T 2k3r_A 59 KRRYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMRYPYI 104 (123)
T ss_dssp TTSBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEEEECC
T ss_pred HHHhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEecC
Confidence 45679999862 23566665432 2578899999977666553
No 262
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=34.08 E-value=13 Score=20.48 Aligned_cols=8 Identities=25% Similarity=0.895 Sum_probs=4.6
Q ss_pred cccCCCCC
Q 034538 22 VFSCPFCN 29 (92)
Q Consensus 22 ~F~CPfC~ 29 (92)
.|.|+.|+
T Consensus 57 ~~~C~~C~ 64 (82)
T 2kmk_A 57 PHKCQVCG 64 (82)
T ss_dssp CEECTTTS
T ss_pred CCcCCCcc
Confidence 45666665
No 263
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=34.06 E-value=19 Score=25.23 Aligned_cols=62 Identities=10% Similarity=0.081 Sum_probs=37.8
Q ss_pred CccccCCCCCCCCeEEEEeecC------------CceEEEEcCccCCe-eE-------eec-CCCCcchhhhh-hHHHHH
Q 034538 20 DTVFSCPFCNHGTSVECRIDMK------------NLIGEAICNICQES-FS-------TTI-TALTEPIDIYS-EWIDEC 77 (92)
Q Consensus 20 ~~~F~CPfC~~~~sV~vkidk~------------~~~g~l~C~~Cg~~-~~-------~~i-~~L~epVDVYs-~WiD~~ 77 (92)
.=++.|.+|+.+.|+++.-... ..+...-||-+... |. ..+ ....+-||.=- +|.|=-
T Consensus 68 Nfv~KCk~C~re~Si~i~~~~~~~~y~~~d~~k~~~i~~FDCRGlEp~eF~p~~~w~a~~~esG~f~dvDLse~eW~DYD 147 (164)
T 1zso_A 68 NFMIKWTEYPKYSTINFVNTKNSCSYEEVNNNEWRDFASFECRGIELIDFFPSNNFIVEDTKGKLYYDVNLSDQNWCDYN 147 (164)
T ss_dssp SEEECCSSSSCCEEEEEECCTTTTEEEGGGTTSCEEEEEEEEESEEEEEECCCSCEEEEETTSCEEEEECCTTSCEEEEE
T ss_pred eEEEeccccCCcceEEEEeCCCCcccccccCCCceEEEEEECCCeeeEEEecCCcEEEEECCCCcEEeeecCCCceeccc
Confidence 5589999999999998855432 14678889988531 21 122 22334555543 577655
Q ss_pred Hhhc
Q 034538 78 ERVN 81 (92)
Q Consensus 78 ~~~n 81 (92)
|.++
T Consensus 148 Ek~~ 151 (164)
T 1zso_A 148 EEHE 151 (164)
T ss_dssp TTTT
T ss_pred cCCC
Confidence 5544
No 264
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=34.00 E-value=14 Score=20.38 Aligned_cols=41 Identities=20% Similarity=0.397 Sum_probs=24.1
Q ss_pred CCCccccCCCCCCCCeEEEEeec----CCceEEEEcCccCCeeEe
Q 034538 18 KLDTVFSCPFCNHGTSVECRIDM----KNLIGEAICNICQESFST 58 (92)
Q Consensus 18 kl~~~F~CPfC~~~~sV~vkidk----~~~~g~l~C~~Cg~~~~~ 58 (92)
.-.+.|.|+.|+..-+-.-.+.+ -.+.-...|..|+..|..
T Consensus 13 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 13 HSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCC
Confidence 34578999999963211111111 122234789999998865
No 265
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=33.90 E-value=25 Score=23.76 Aligned_cols=16 Identities=19% Similarity=0.576 Sum_probs=13.6
Q ss_pred eEEEEcCccCCeeEee
Q 034538 44 IGEAICNICQESFSTT 59 (92)
Q Consensus 44 ~g~l~C~~Cg~~~~~~ 59 (92)
-|.+.|..||-.|-.+
T Consensus 97 EG~L~Cp~cgr~ypI~ 112 (125)
T 3q87_A 97 EGSLRCDMCGLIYPIK 112 (125)
T ss_dssp EEEEEETTTCCEEEEE
T ss_pred EEEEECCCCCCEeecc
Confidence 4899999999999763
No 266
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=33.75 E-value=13 Score=22.59 Aligned_cols=9 Identities=33% Similarity=1.065 Sum_probs=4.5
Q ss_pred ccccCCCCC
Q 034538 21 TVFSCPFCN 29 (92)
Q Consensus 21 ~~F~CPfC~ 29 (92)
+.|.|+.||
T Consensus 27 ~~h~C~~Cg 35 (85)
T 2lv2_A 27 ECHLCPVCG 35 (85)
T ss_dssp TTEECTTSC
T ss_pred CCEECCCCC
Confidence 445555553
No 267
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=33.27 E-value=9 Score=32.10 Aligned_cols=28 Identities=21% Similarity=0.478 Sum_probs=0.0
Q ss_pred ccCCCCCCCCeEEEEeec-CCceEEEEcCc---cCCee
Q 034538 23 FSCPFCNHGTSVECRIDM-KNLIGEAICNI---CQESF 56 (92)
Q Consensus 23 F~CPfC~~~~sV~vkidk-~~~~g~l~C~~---Cg~~~ 56 (92)
=.||.||++ + -+ ..+-+.+.|.+ |-...
T Consensus 416 ~~CP~Cgs~--l----~~~~~~~~~~rC~n~~~CpaQ~ 447 (615)
T 3sgi_A 416 TTCPECGSP--L----APEKEGDADIRCPNARGCPGQL 447 (615)
T ss_dssp --------------------------------------
T ss_pred CCCCCCCCe--e----eecCCCCEEEEcCCCCCCHHHH
Confidence 369999985 2 12 34556799976 87653
No 268
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=33.01 E-value=4.1 Score=25.40 Aligned_cols=36 Identities=22% Similarity=0.471 Sum_probs=18.0
Q ss_pred ccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEe
Q 034538 23 FSCPFCNHGTSVECRIDMKNLIGEAICNICQESFST 58 (92)
Q Consensus 23 F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 58 (92)
..||.|...-...--.........+.|.+|...|+.
T Consensus 49 ~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~~~~ 84 (133)
T 4ap4_A 49 NTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSE 84 (133)
T ss_dssp SBCTTTCCBCTTTCEEECBCSSSSCBCTTTCCBHHH
T ss_pred CCCCCCCCcCccccccccccCCCCCCCCCCCCcccc
Confidence 378888864221111001112235678888776643
No 269
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=32.73 E-value=15 Score=17.52 Aligned_cols=11 Identities=18% Similarity=0.640 Sum_probs=7.5
Q ss_pred CccccCCC--CCC
Q 034538 20 DTVFSCPF--CNH 30 (92)
Q Consensus 20 ~~~F~CPf--C~~ 30 (92)
++.|.|++ |+.
T Consensus 6 ~k~~~C~~~~C~k 18 (37)
T 1va1_A 6 KKQHICHIQGCGK 18 (37)
T ss_dssp CCCEECCSTTCCC
T ss_pred CCCCCCCCCCCCC
Confidence 45688875 874
No 270
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=32.58 E-value=14 Score=20.57 Aligned_cols=11 Identities=27% Similarity=0.821 Sum_probs=8.6
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 45 ~~~~~C~~C~~ 55 (86)
T 1x6h_A 45 PAAFVCSKCGK 55 (86)
T ss_dssp CCCEECSSSCC
T ss_pred CcceECCCCCC
Confidence 35799999985
No 271
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=32.33 E-value=41 Score=18.49 Aligned_cols=40 Identities=15% Similarity=0.307 Sum_probs=23.6
Q ss_pred CCccccCCCCCCCCeEEEEeec----CCceEEEEcCccCCeeEe
Q 034538 19 LDTVFSCPFCNHGTSVECRIDM----KNLIGEAICNICQESFST 58 (92)
Q Consensus 19 l~~~F~CPfC~~~~sV~vkidk----~~~~g~l~C~~Cg~~~~~ 58 (92)
-++.|.|+.|+..-.-.-.+.+ -.+.....|..|+..|..
T Consensus 15 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 58 (77)
T 2cot_A 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQ 58 (77)
T ss_dssp CSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESS
T ss_pred CCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCC
Confidence 3568999999963211111110 122234789999998865
No 272
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=32.16 E-value=19 Score=24.98 Aligned_cols=16 Identities=0% Similarity=-0.143 Sum_probs=13.0
Q ss_pred CCCCCccccCCCCCCC
Q 034538 16 VDKLDTVFSCPFCNHG 31 (92)
Q Consensus 16 ~~kl~~~F~CPfC~~~ 31 (92)
...+|..|.||.|..-
T Consensus 202 ~~~~~~~~~c~i~~~~ 217 (281)
T 2c2l_A 202 KRDIPDYLCGKISFEL 217 (281)
T ss_dssp CCCCCSTTBCTTTCSB
T ss_pred CCCCCcccCCcCcCCH
Confidence 4577899999999864
No 273
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=32.00 E-value=15 Score=26.63 Aligned_cols=12 Identities=25% Similarity=0.717 Sum_probs=8.6
Q ss_pred CCccccCCCCCC
Q 034538 19 LDTVFSCPFCNH 30 (92)
Q Consensus 19 l~~~F~CPfC~~ 30 (92)
+-+-|.||||+-
T Consensus 151 ~~~~f~Cp~C~~ 162 (192)
T 2avu_E 151 PVGSFACSLCQP 162 (192)
T ss_dssp CSSCCCCTTC--
T ss_pred CCCCCcCCCCCC
Confidence 457899999994
No 274
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=31.81 E-value=16 Score=20.98 Aligned_cols=10 Identities=40% Similarity=1.045 Sum_probs=7.1
Q ss_pred ccccCCCCCC
Q 034538 21 TVFSCPFCNH 30 (92)
Q Consensus 21 ~~F~CPfC~~ 30 (92)
+.|.|+.|+.
T Consensus 74 ~~~~C~~C~~ 83 (100)
T 2ebt_A 74 KPFQCGVCNR 83 (100)
T ss_dssp CSCBCSSSCC
T ss_pred CCeECCCCcC
Confidence 4578888874
No 275
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=31.46 E-value=17 Score=18.67 Aligned_cols=10 Identities=40% Similarity=1.049 Sum_probs=6.4
Q ss_pred ccccCCCCCC
Q 034538 21 TVFSCPFCNH 30 (92)
Q Consensus 21 ~~F~CPfC~~ 30 (92)
..|.||.|..
T Consensus 2 ~k~~CpvCk~ 11 (28)
T 2jvx_A 2 SDFCCPKCQY 11 (28)
T ss_dssp CCEECTTSSC
T ss_pred CcccCccccc
Confidence 3567777764
No 276
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=31.27 E-value=16 Score=20.14 Aligned_cols=10 Identities=20% Similarity=0.587 Sum_probs=6.3
Q ss_pred ccccCCCCCC
Q 034538 21 TVFSCPFCNH 30 (92)
Q Consensus 21 ~~F~CPfC~~ 30 (92)
+.|.|+.|+.
T Consensus 67 ~~~~C~~C~k 76 (79)
T 2dlk_A 67 RDYICEFSGP 76 (79)
T ss_dssp CCCSCCSSSC
T ss_pred CCeeCCCCCC
Confidence 4567777763
No 277
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=30.82 E-value=21 Score=27.18 Aligned_cols=51 Identities=12% Similarity=0.222 Sum_probs=36.7
Q ss_pred CCCCeEEEEeecCCceEEEEcCc-cCCeeE-eecCCCCcchhhhhhHHHHHHhh
Q 034538 29 NHGTSVECRIDMKNLIGEAICNI-CQESFS-TTITALTEPIDIYSEWIDECERV 80 (92)
Q Consensus 29 ~~~~sV~vkidk~~~~g~l~C~~-Cg~~~~-~~i~~L~epVDVYs~WiD~~~~~ 80 (92)
|..+.+....++ .|.....|.. ||..+. |++.-...+-+-|..|+..-.+.
T Consensus 226 G~~n~~~~~~~~-~G~y~g~CsE~CG~~Hs~M~~~v~vvs~~~F~~Wl~~~~~~ 278 (298)
T 3hb3_B 226 GRIAQLWFSVDQ-EGVYFGQCSELCGINHAYMPIVVKAVSQEKYEAWLAGAKEE 278 (298)
T ss_dssp TCCEEEEEECSS-SEEEEECCCSCCSTTTTSCCEEEEEECHHHHHHHHHHHHHH
T ss_pred CceEEEEEEeCC-CEEEEEEcccccCcCccCCeeEEEEEcHHHHHHHHHHhHhh
Confidence 444556666654 5788899996 999775 46665566778999999876554
No 278
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=30.52 E-value=18 Score=20.63 Aligned_cols=10 Identities=20% Similarity=0.753 Sum_probs=7.2
Q ss_pred ccccCCCCCC
Q 034538 21 TVFSCPFCNH 30 (92)
Q Consensus 21 ~~F~CPfC~~ 30 (92)
+.|.|+.|+.
T Consensus 64 ~~~~C~~C~~ 73 (95)
T 2yt9_A 64 KPYICQSCGK 73 (95)
T ss_dssp SSBCCSSSCC
T ss_pred CceECCCccc
Confidence 5677888874
No 279
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=30.46 E-value=17 Score=21.23 Aligned_cols=12 Identities=17% Similarity=0.700 Sum_probs=9.8
Q ss_pred CccccCCCCCCC
Q 034538 20 DTVFSCPFCNHG 31 (92)
Q Consensus 20 ~~~F~CPfC~~~ 31 (92)
++.|.|+.|+..
T Consensus 11 ekpy~C~~CgK~ 22 (66)
T 2epp_A 11 AGILPCGLCGKV 22 (66)
T ss_dssp CCCCCCTTTCCC
T ss_pred ccCcCCCCCCCc
Confidence 567999999963
No 280
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=29.68 E-value=18 Score=17.01 Aligned_cols=10 Identities=30% Similarity=0.853 Sum_probs=6.2
Q ss_pred ccccCCC--CCC
Q 034538 21 TVFSCPF--CNH 30 (92)
Q Consensus 21 ~~F~CPf--C~~ 30 (92)
+.|.|++ |+.
T Consensus 5 k~~~C~~~~C~k 16 (38)
T 1bhi_A 5 KPFLCTAPGCGQ 16 (38)
T ss_dssp CCEECCCTTTCC
T ss_pred cceECCCCCCCc
Confidence 4577774 764
No 281
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=29.08 E-value=18 Score=20.31 Aligned_cols=8 Identities=38% Similarity=1.248 Sum_probs=4.3
Q ss_pred cccCCCCC
Q 034538 22 VFSCPFCN 29 (92)
Q Consensus 22 ~F~CPfC~ 29 (92)
.|.|+.|+
T Consensus 62 ~~~C~~C~ 69 (90)
T 1a1h_A 62 PFACDICG 69 (90)
T ss_dssp CEECTTTC
T ss_pred CccCCCCC
Confidence 35555555
No 282
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=29.07 E-value=24 Score=22.22 Aligned_cols=33 Identities=21% Similarity=0.493 Sum_probs=21.3
Q ss_pred cccCCCCCCCCeEEEEeec-CCceEEEEcCccCCeeE
Q 034538 22 VFSCPFCNHGTSVECRIDM-KNLIGEAICNICQESFS 57 (92)
Q Consensus 22 ~F~CPfC~~~~sV~vkidk-~~~~g~l~C~~Cg~~~~ 57 (92)
.+.|| ||-. ..+..+- ..+.-.+.|..|.+.-.
T Consensus 30 ~y~Cr-CGd~--F~it~edL~~ge~iv~C~sCSL~I~ 63 (83)
T 1wge_A 30 FYPCP-CGDN--FAITKEDLENGEDVATCPSCSLIIK 63 (83)
T ss_dssp EECCS-SSSC--EEEEHHHHHTTCCEEECTTTCCEEE
T ss_pred EEeCC-CCCE--EEECHHHHhCCCEEEECCCCceEEE
Confidence 46798 9853 5555532 24455788999988543
No 283
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=28.14 E-value=24 Score=23.20 Aligned_cols=13 Identities=15% Similarity=0.506 Sum_probs=10.8
Q ss_pred CCCccccCCCCCC
Q 034538 18 KLDTVFSCPFCNH 30 (92)
Q Consensus 18 kl~~~F~CPfC~~ 30 (92)
.-...|+||.|+.
T Consensus 66 ~~s~~~~C~nC~R 78 (99)
T 3mhs_C 66 ESSQYIHCENCGR 78 (99)
T ss_dssp TTSCEEECTTTCC
T ss_pred cCCCeEECCCCCC
Confidence 4567899999996
No 284
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=28.05 E-value=33 Score=19.86 Aligned_cols=41 Identities=22% Similarity=0.514 Sum_probs=22.5
Q ss_pred CCCccccCCCCCCCCeEEEEeec----CCceEEEEcCccCCeeEe
Q 034538 18 KLDTVFSCPFCNHGTSVECRIDM----KNLIGEAICNICQESFST 58 (92)
Q Consensus 18 kl~~~F~CPfC~~~~sV~vkidk----~~~~g~l~C~~Cg~~~~~ 58 (92)
.-++.|.|+.|+..-.-.-.+.. -.+.....|..|+..|..
T Consensus 13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 57 (106)
T 2ee8_A 13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRR 57 (106)
T ss_dssp CCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSC
T ss_pred CCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCC
Confidence 34567999999863110000100 112234689999988754
No 285
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=27.47 E-value=16 Score=26.55 Aligned_cols=46 Identities=13% Similarity=0.242 Sum_probs=30.8
Q ss_pred CCCeEEEEeecCCceEEEEcCc-cCCeeE-eecCCCCcchhhhhhHHHH
Q 034538 30 HGTSVECRIDMKNLIGEAICNI-CQESFS-TTITALTEPIDIYSEWIDE 76 (92)
Q Consensus 30 ~~~sV~vkidk~~~~g~l~C~~-Cg~~~~-~~i~~L~epVDVYs~WiD~ 76 (92)
..+.+...++ +.|+....|.. ||..+. |++.-...+-+-|.+|++.
T Consensus 178 r~n~~~~~~~-~~G~y~g~Cse~CG~~Hs~M~~~v~vv~~~~f~~W~~~ 225 (227)
T 1v54_B 178 RLNQTTLMSS-RPGLYYGQCSEICGSNHSFMPIVLELVPLKYFEKWSAS 225 (227)
T ss_dssp CCEEEEECCS-SCEEEEECCCSCCSTTGGGCCEEEEEECHHHHHHHHHH
T ss_pred ceEEEEEecC-CcEEEEEEehhhcccccccCeEEEEEEcHHHHHHHHHh
Confidence 3344555443 35778899986 999765 4555445566889999964
No 286
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.25 E-value=20 Score=19.17 Aligned_cols=38 Identities=16% Similarity=0.292 Sum_probs=23.1
Q ss_pred CCccccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEee
Q 034538 19 LDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTT 59 (92)
Q Consensus 19 l~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~ 59 (92)
-++.|.|+.|+.. ..-.-.... .....|..||..|...
T Consensus 15 ~~~~~~C~~C~k~--f~~~~~l~~-~~~~~C~~C~~~f~~~ 52 (73)
T 2ctu_A 15 GDRSQKCSKCGII--FIRRSTLSR-RKTPMCEKCRKDSCQE 52 (73)
T ss_dssp CCSEEECSSSCCE--EECCCCCCC-SSSCCCHHHHHTCSCC
T ss_pred CCCCeeCCcccch--hCCHHHhCc-CCCCCCCCCChhhcCH
Confidence 3578999999962 222111111 2346899999888653
No 287
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.19 E-value=19 Score=20.23 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=13.6
Q ss_pred CCCCCCccccCCCCCCC
Q 034538 15 RVDKLDTVFSCPFCNHG 31 (92)
Q Consensus 15 ~~~kl~~~F~CPfC~~~ 31 (92)
....++..|.||.|...
T Consensus 13 ~~~~~~~~~~C~IC~~~ 29 (73)
T 2ysl_A 13 FVNKLQEEVICPICLDI 29 (73)
T ss_dssp CCCCCCCCCBCTTTCSB
T ss_pred HHHhCccCCEeccCCcc
Confidence 35678889999999864
No 288
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.17 E-value=21 Score=21.09 Aligned_cols=40 Identities=20% Similarity=0.376 Sum_probs=23.1
Q ss_pred CCccccCCCCCCCCe-EEEEeecC----Cc-eEEEEcCccCCeeEe
Q 034538 19 LDTVFSCPFCNHGTS-VECRIDMK----NL-IGEAICNICQESFST 58 (92)
Q Consensus 19 l~~~F~CPfC~~~~s-V~vkidk~----~~-~g~l~C~~Cg~~~~~ 58 (92)
-++.|.|+.|+..-. -.-.|.+- .+ .-...|..|+..|..
T Consensus 21 ~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~ 66 (98)
T 2gqj_A 21 ERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKS 66 (98)
T ss_dssp TTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSC
T ss_pred cCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCC
Confidence 357899999997422 11111110 11 224689999998864
No 289
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.89 E-value=21 Score=21.17 Aligned_cols=11 Identities=36% Similarity=1.168 Sum_probs=9.3
Q ss_pred CccccCCCCCC
Q 034538 20 DTVFSCPFCNH 30 (92)
Q Consensus 20 ~~~F~CPfC~~ 30 (92)
++.|.|+.|+.
T Consensus 78 ~~~~~C~~C~k 88 (115)
T 2dmi_A 78 QKVLKCMYCGH 88 (115)
T ss_dssp CSSCBCSSSCC
T ss_pred CcceECCCCCC
Confidence 57899999985
No 290
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=26.54 E-value=52 Score=25.46 Aligned_cols=54 Identities=19% Similarity=0.267 Sum_probs=35.2
Q ss_pred CCCCccccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeE----eecCCCCcchhhhhhHHHHHHhh
Q 034538 17 DKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFS----TTITALTEPIDIYSEWIDECERV 80 (92)
Q Consensus 17 ~kl~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~----~~i~~L~epVDVYs~WiD~~~~~ 80 (92)
.++--++.|+-|++- ...... ....-.|..||..+. +++.+|.++ +|++.+.+.
T Consensus 239 ~~~g~v~~C~~C~~~---~~~~~~--~~~~~~C~~cg~~~~~~GPlW~g~l~d~-----~fv~~~l~~ 296 (392)
T 3axs_A 239 EQFGYIQYCFNCMNR---EVVTDL--YKFKEKCPHCGSKFHIGGPLWIGKLWDE-----EFTNFLYEE 296 (392)
T ss_dssp TTEEEEEECTTTCCE---EEECCG--GGCCSBCTTTCSBCEEEEEEECSCSCCH-----HHHHHHHHH
T ss_pred HhcceEEECCCCCCe---EeecCC--CCCCCcCCCCCCccceecccccCcCCCH-----HHHHHHHHH
Confidence 356678999999973 222211 112357999998876 578999876 566665544
No 291
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=26.50 E-value=17 Score=15.65 Aligned_cols=6 Identities=50% Similarity=0.960 Sum_probs=2.8
Q ss_pred ccCCee
Q 034538 51 ICQESF 56 (92)
Q Consensus 51 ~Cg~~~ 56 (92)
.||..|
T Consensus 9 ~C~k~f 14 (29)
T 2ab3_A 9 NCGRSF 14 (29)
T ss_dssp TTCEEE
T ss_pred cCcCcc
Confidence 444444
No 292
>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A
Probab=25.80 E-value=35 Score=23.35 Aligned_cols=21 Identities=29% Similarity=0.694 Sum_probs=14.1
Q ss_pred CceEEEEcCccCCee--EeecCCC
Q 034538 42 NLIGEAICNICQESF--STTITAL 63 (92)
Q Consensus 42 ~~~g~l~C~~Cg~~~--~~~i~~L 63 (92)
...|.|.|+ ||+.. ++....+
T Consensus 63 ~~~g~I~C~-Cgq~WG~~m~yk~~ 85 (133)
T 3ga3_A 63 QINGEIICK-CGQAWGTMMVHKGL 85 (133)
T ss_dssp EEEEEEEET-TSCEEEEEEEETTE
T ss_pred cCCceEEEe-cCChhhhhEEeccc
Confidence 456899999 99863 4444433
No 293
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=25.13 E-value=24 Score=26.12 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=32.1
Q ss_pred CCCeEEEEeecCCceEEEEcCc-cCCeeE-eecCCCCcchhhhhhHHHH
Q 034538 30 HGTSVECRIDMKNLIGEAICNI-CQESFS-TTITALTEPIDIYSEWIDE 76 (92)
Q Consensus 30 ~~~sV~vkidk~~~~g~l~C~~-Cg~~~~-~~i~~L~epVDVYs~WiD~ 76 (92)
..+.+...+++ .|.....|.. ||..+. |.+.-...+-+-|.+|+++
T Consensus 209 ~~n~~~~~~~~-~G~y~g~Cse~CG~~H~~M~~~v~vv~~~~f~~W~~~ 256 (262)
T 2gsm_B 209 RLAQLWFRAER-EGIFFGQCSELCGISHAYMPITVKVVSEEAYAAWLEQ 256 (262)
T ss_dssp CCEEEEEECCS-CEEEEECCCSCCSTTGGGCCEEEEEECHHHHHHHHHH
T ss_pred ceeEEEEecCC-cEEEEEEChHhcccCcccCeEEEEEEcHHHHHHHHHH
Confidence 34455555543 5778899986 999764 4555555667899999975
No 294
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.11 E-value=24 Score=17.41 Aligned_cols=9 Identities=0% Similarity=-0.533 Sum_probs=5.3
Q ss_pred CccccCCCC
Q 034538 20 DTVFSCPFC 28 (92)
Q Consensus 20 ~~~F~CPfC 28 (92)
++.|.|+.|
T Consensus 40 ~k~~~C~~C 48 (48)
T 2ent_A 40 VKPSGPSSG 48 (48)
T ss_dssp CCSCSSCCC
T ss_pred CCCCCCCCC
Confidence 345666665
No 295
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=24.89 E-value=18 Score=21.27 Aligned_cols=32 Identities=19% Similarity=0.430 Sum_probs=23.7
Q ss_pred CCccccCCCCCCCCeEEEEeecCCceEEEEcCccCCeeEee
Q 034538 19 LDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTT 59 (92)
Q Consensus 19 l~~~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~~ 59 (92)
-+....|+.|+... .+...|.|-.|...|.+.
T Consensus 15 ~~~~~~C~~C~~~~---------~~~~mi~CD~C~~wfH~~ 46 (75)
T 2k16_A 15 GNQIWICPGCNKPD---------DGSPMIGCDDCDDWYHWP 46 (75)
T ss_dssp SCEEECBTTTTBCC---------SSCCEEECSSSSSEEEHH
T ss_pred CCCCcCCCCCCCCC---------CCCCEEEcCCCCcccccc
Confidence 34566799999742 234578999999999875
No 296
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=24.86 E-value=27 Score=24.71 Aligned_cols=19 Identities=21% Similarity=0.492 Sum_probs=12.4
Q ss_pred cCCceEEEEcCccCCeeEe
Q 034538 40 MKNLIGEAICNICQESFST 58 (92)
Q Consensus 40 k~~~~g~l~C~~Cg~~~~~ 58 (92)
.+....++.|..||+.+-.
T Consensus 157 ~~~~~~~~~C~~CGE~~~~ 175 (191)
T 3d00_A 157 KKHKGKIVLCPQCREAYPA 175 (191)
T ss_dssp CCCCCCEEECTTTCCEEEG
T ss_pred CcCCcCCEECCcCCCChhh
Confidence 3344577788888876653
No 297
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=24.74 E-value=25 Score=20.82 Aligned_cols=9 Identities=33% Similarity=1.006 Sum_probs=4.7
Q ss_pred cccCCCCCC
Q 034538 22 VFSCPFCNH 30 (92)
Q Consensus 22 ~F~CPfC~~ 30 (92)
.|.|+.|+.
T Consensus 7 ~~~C~~C~~ 15 (124)
T 2dlq_A 7 GVECPTCHK 15 (124)
T ss_dssp SCCCTTTCC
T ss_pred CCCCCCCCC
Confidence 455555553
No 298
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.54 E-value=23 Score=20.79 Aligned_cols=8 Identities=25% Similarity=1.094 Sum_probs=3.8
Q ss_pred cccCCCCC
Q 034538 22 VFSCPFCN 29 (92)
Q Consensus 22 ~F~CPfC~ 29 (92)
.|.|+.|+
T Consensus 65 ~~~C~~C~ 72 (110)
T 2csh_A 65 PYECNICA 72 (110)
T ss_dssp CEECSSSC
T ss_pred CeeCCCCc
Confidence 34455444
No 299
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}
Probab=24.52 E-value=8.4 Score=26.28 Aligned_cols=14 Identities=0% Similarity=-0.073 Sum_probs=10.8
Q ss_pred hhhhhHHHHHHhhc
Q 034538 68 DIYSEWIDECERVN 81 (92)
Q Consensus 68 DVYs~WiD~~~~~n 81 (92)
+-|-++.|++.+..
T Consensus 81 ~~f~~~~~aLf~~q 94 (182)
T 3gn3_A 81 ESAKAVMTAVASHR 94 (182)
T ss_dssp HHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHhcC
Confidence 57888888887764
No 300
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=24.24 E-value=32 Score=20.60 Aligned_cols=15 Identities=13% Similarity=0.157 Sum_probs=12.4
Q ss_pred CCCCccccCCCCCCC
Q 034538 17 DKLDTVFSCPFCNHG 31 (92)
Q Consensus 17 ~kl~~~F~CPfC~~~ 31 (92)
..+|..|.||.|+.-
T Consensus 9 ~~~p~~~~CpI~~~~ 23 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTL 23 (85)
T ss_dssp TTCCTTTBCTTTCSB
T ss_pred hcCchheECcccCch
Confidence 467899999999863
No 301
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=24.16 E-value=29 Score=23.12 Aligned_cols=16 Identities=19% Similarity=0.536 Sum_probs=11.9
Q ss_pred CCCCccccCCCCCCCC
Q 034538 17 DKLDTVFSCPFCNHGT 32 (92)
Q Consensus 17 ~kl~~~F~CPfC~~~~ 32 (92)
=++-..|.||.||+..
T Consensus 66 CPvLR~Y~CpiCGATG 81 (106)
T 3alr_A 66 CPYLRQYKCPLCGATG 81 (106)
T ss_dssp CTTGGGCCCTTTCCCG
T ss_pred CCCcccccCCCCCCcC
Confidence 3555779999999753
No 302
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=24.09 E-value=25 Score=29.56 Aligned_cols=15 Identities=33% Similarity=0.935 Sum_probs=12.3
Q ss_pred ccccCCCCCCCCeEE
Q 034538 21 TVFSCPFCNHGTSVE 35 (92)
Q Consensus 21 ~~F~CPfC~~~~sV~ 35 (92)
+.|.|+||++.+.+-
T Consensus 76 ~~W~C~~C~~~N~~P 90 (768)
T 1m2o_A 76 SSWSCPICNSRNHLP 90 (768)
T ss_dssp TEECCTTTCCCCBCC
T ss_pred CEEEcccCCCCCCCC
Confidence 589999999987644
No 303
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=24.02 E-value=29 Score=22.80 Aligned_cols=19 Identities=11% Similarity=0.373 Sum_probs=14.9
Q ss_pred eEEEEcCccCCeeEeecCC
Q 034538 44 IGEAICNICQESFSTTITA 62 (92)
Q Consensus 44 ~g~l~C~~Cg~~~~~~i~~ 62 (92)
-.++.|..||..++.....
T Consensus 88 H~HliC~~Cg~v~~~~~~~ 106 (145)
T 3eyy_A 88 HIHLVCRDCTNVIEADLSV 106 (145)
T ss_dssp SEEEEESSSSCEEEECGGG
T ss_pred ceEEEECCCCCEEEecCcc
Confidence 3789999999988775443
No 304
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=23.97 E-value=37 Score=22.64 Aligned_cols=8 Identities=38% Similarity=1.007 Sum_probs=5.4
Q ss_pred cCCCCCCC
Q 034538 24 SCPFCNHG 31 (92)
Q Consensus 24 ~CPfC~~~ 31 (92)
.||.||++
T Consensus 150 ~Cp~CG~~ 157 (165)
T 2lcq_A 150 VCPDCGSK 157 (165)
T ss_dssp BCTTTCCB
T ss_pred cCCCCCCc
Confidence 57777763
No 305
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=23.79 E-value=86 Score=22.81 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=19.0
Q ss_pred cCCCCCCCCeEEEEeecCCceEEEEcCccC
Q 034538 24 SCPFCNHGTSVECRIDMKNLIGEAICNICQ 53 (92)
Q Consensus 24 ~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg 53 (92)
.||.||.. -..+++ .+.++-.|..|.
T Consensus 236 pC~~CG~~-I~~~~~---~gR~t~~CP~CQ 261 (262)
T 1k3x_A 236 PCERCGSI-IEKTTL---SSRPFYWCPGCQ 261 (262)
T ss_dssp BCTTTCCB-CEEEEE---TTEEEEECTTTC
T ss_pred CCCCCCCE-eEEEEE---CCCCeEECCCCC
Confidence 49999974 233333 578899999996
No 306
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=23.71 E-value=86 Score=22.93 Aligned_cols=26 Identities=23% Similarity=0.512 Sum_probs=19.2
Q ss_pred cCCCCCCCCeEEEEeecCCceEEEEcCccC
Q 034538 24 SCPFCNHGTSVECRIDMKNLIGEAICNICQ 53 (92)
Q Consensus 24 ~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg 53 (92)
.||.||.. -..+++ .+.++-.|..|.
T Consensus 242 pC~~CG~~-I~~~~~---~gR~t~~CP~CQ 267 (268)
T 1k82_A 242 PCRVCGTP-IVATKH---AQRATFYCRQCQ 267 (268)
T ss_dssp BCTTTCCB-CEEEEE---TTEEEEECTTTC
T ss_pred CCCCCCCE-eeEEEE---CCCceEECCCCC
Confidence 49999974 233333 578899999996
No 307
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=23.64 E-value=29 Score=24.32 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=16.9
Q ss_pred cccCCCCCCCCeEEEEeecCCceEEEEcCccCCe
Q 034538 22 VFSCPFCNHGTSVECRIDMKNLIGEAICNICQES 55 (92)
Q Consensus 22 ~F~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~~ 55 (92)
...||.||. + |. . ..-|.-.|..|+..
T Consensus 42 Y~ACp~CnK-K-V~-~----~~~g~~~CekC~~~ 68 (172)
T 3u50_C 42 YYRCTCQGK-S-VL-K----YHGDSFFCESCQQF 68 (172)
T ss_dssp EEECTTSCC-C-EE-E----ETTTEEEETTTTEE
T ss_pred ehhchhhCC-E-ee-e----CCCCeEECCCCCCC
Confidence 557888886 2 32 1 12356788888875
No 308
>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae}
Probab=23.50 E-value=39 Score=23.27 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=16.1
Q ss_pred ceEEEEcCccCCeeEee--cCCC
Q 034538 43 LIGEAICNICQESFSTT--ITAL 63 (92)
Q Consensus 43 ~~g~l~C~~Cg~~~~~~--i~~L 63 (92)
.-|.+.|..||..|-.. |+-+
T Consensus 106 ~eg~L~C~~cg~~YPI~dGIP~m 128 (141)
T 2j6a_A 106 AEGEMKCRNCGHIYYIKNGIPNL 128 (141)
T ss_dssp EEEEEECTTTCCEEEEETTEESS
T ss_pred cCCEEECCCCCCcccccCCccCc
Confidence 34889999999999763 5543
No 309
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=23.43 E-value=89 Score=22.86 Aligned_cols=27 Identities=22% Similarity=0.629 Sum_probs=19.7
Q ss_pred cCCCCCCCCeEEEEeecCCceEEEEcCccCC
Q 034538 24 SCPFCNHGTSVECRIDMKNLIGEAICNICQE 54 (92)
Q Consensus 24 ~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~ 54 (92)
.||.||.. -..+++ .+.++-.|..|..
T Consensus 244 pC~~CG~~-I~~~~~---~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 244 KCSRCGAE-IQKIKV---AGRGTHFCPVCQQ 270 (271)
T ss_dssp BCTTTCCB-CEEEEE---TTEEEEECTTTSC
T ss_pred CCCCCCCE-eeEEEE---CCCceEECCCCCC
Confidence 49999974 233333 5788999999974
No 310
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=23.02 E-value=24 Score=22.06 Aligned_cols=17 Identities=24% Similarity=0.632 Sum_probs=13.9
Q ss_pred CCCCCCccccCCCCCCC
Q 034538 15 RVDKLDTVFSCPFCNHG 31 (92)
Q Consensus 15 ~~~kl~~~F~CPfC~~~ 31 (92)
-...++..|.||.|...
T Consensus 11 ~~~~~~~~~~C~IC~~~ 27 (118)
T 3hct_A 11 FDPPLESKYECPICLMA 27 (118)
T ss_dssp BSSCCCGGGBCTTTCSB
T ss_pred hccCCCCCCCCCcCChh
Confidence 35688999999999864
No 311
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=23.00 E-value=34 Score=21.24 Aligned_cols=15 Identities=13% Similarity=0.064 Sum_probs=12.6
Q ss_pred CCCCCccccCCCCCC
Q 034538 16 VDKLDTVFSCPFCNH 30 (92)
Q Consensus 16 ~~kl~~~F~CPfC~~ 30 (92)
...+|..|.||.|..
T Consensus 16 ~~~~p~~~~CpI~~~ 30 (98)
T 1wgm_A 16 YADACDEFLDPIMST 30 (98)
T ss_dssp CCSCCTTTBCTTTCS
T ss_pred hhcCcHhcCCcCccc
Confidence 456889999999986
No 312
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=22.65 E-value=51 Score=24.19 Aligned_cols=27 Identities=26% Similarity=0.587 Sum_probs=19.4
Q ss_pred cCCCCCCCCeEEEEeecCCceEEEEcCccCC
Q 034538 24 SCPFCNHGTSVECRIDMKNLIGEAICNICQE 54 (92)
Q Consensus 24 ~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg~ 54 (92)
.||.||.. -..+++ .+.++-.|..|..
T Consensus 237 pC~~CG~~-I~~~~~---~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 237 PCPACGRP-VERRVV---AGRGTHFCPTCQG 263 (266)
T ss_dssp BCTTTCCB-CEEEES---SSCEEEECTTTTT
T ss_pred CCCCCCCE-eeEEEE---CCCceEECCCCCC
Confidence 59999974 223333 5778999999974
No 313
>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus}
Probab=22.64 E-value=34 Score=21.63 Aligned_cols=12 Identities=25% Similarity=0.769 Sum_probs=9.6
Q ss_pred EEEcCccCCeeEe
Q 034538 46 EAICNICQESFST 58 (92)
Q Consensus 46 ~l~C~~Cg~~~~~ 58 (92)
.-+|+ ||.+|..
T Consensus 98 ~~~Cg-CG~SF~~ 109 (112)
T 1x0g_A 98 SQTCG-CGMAFRV 109 (112)
T ss_dssp SEECS-SSSEEEC
T ss_pred CcCCC-CCCcccc
Confidence 45788 9999975
No 314
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=22.52 E-value=93 Score=22.84 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=19.0
Q ss_pred cCCCCCCCCeEEEEeecCCceEEEEcCccC
Q 034538 24 SCPFCNHGTSVECRIDMKNLIGEAICNICQ 53 (92)
Q Consensus 24 ~CPfC~~~~sV~vkidk~~~~g~l~C~~Cg 53 (92)
.||.||.. -..+++ .+-++-.|..|.
T Consensus 247 pC~~CG~~-I~~~~~---~gR~t~~CP~CQ 272 (273)
T 3u6p_A 247 PCKRCGTP-IEKTVV---AGRGTHYCPRCQ 272 (273)
T ss_dssp BCTTTCCB-CEEEEE---TTEEEEECTTTC
T ss_pred CCCCCCCe-EEEEEE---CCCCeEECCCCC
Confidence 69999974 233333 578899999996
No 315
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=22.37 E-value=36 Score=21.18 Aligned_cols=16 Identities=13% Similarity=0.125 Sum_probs=13.1
Q ss_pred CCCCCccccCCCCCCC
Q 034538 16 VDKLDTVFSCPFCNHG 31 (92)
Q Consensus 16 ~~kl~~~F~CPfC~~~ 31 (92)
...+|..|.||.|..-
T Consensus 23 ~~~~p~~~~CpI~~~~ 38 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTL 38 (100)
T ss_dssp CSSCSTTTBCTTTCSB
T ss_pred hccCcHhhCCcCccCc
Confidence 4578999999999863
No 316
>2lkl_A Erythrocyte membrane protein 1 (pfemp1); helical protein, cell adhesion; NMR {Plasmodium falciparum}
Probab=22.23 E-value=38 Score=21.44 Aligned_cols=23 Identities=22% Similarity=0.749 Sum_probs=17.0
Q ss_pred cCCCCcchhhhhhHHHH----HHhhcC
Q 034538 60 ITALTEPIDIYSEWIDE----CERVNN 82 (92)
Q Consensus 60 i~~L~epVDVYs~WiD~----~~~~n~ 82 (92)
-.|+..-+|.|++|+|. ||.-+.
T Consensus 40 ~DPI~NQLnLfHkWLDRHRdMCEkw~n 66 (81)
T 2lkl_A 40 SDPIMNQLDLLHKWLDRHRDMCEKWKS 66 (81)
T ss_dssp SCSSCTTHHHHHHHHHHTGGGGGGTCC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 35677888999999985 555544
No 317
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=21.61 E-value=45 Score=21.21 Aligned_cols=21 Identities=14% Similarity=0.597 Sum_probs=17.2
Q ss_pred hhhhHHHHHHhhcCccccchh
Q 034538 69 IYSEWIDECERVNNLEDDGAY 89 (92)
Q Consensus 69 VYs~WiD~~~~~n~~~~~~~~ 89 (92)
|-.+|+++|.+.++..+|.-|
T Consensus 73 V~~~Wv~~C~~~~~~vdE~~Y 93 (107)
T 3pa6_A 73 VSVLWVEKCRTAGAHIDESLF 93 (107)
T ss_dssp ECHHHHHHHHHHTSCCCGGGS
T ss_pred ECHHHHHHHHHhCccCChhcc
Confidence 677999999999987776554
No 318
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=21.43 E-value=50 Score=20.74 Aligned_cols=29 Identities=31% Similarity=0.807 Sum_probs=19.7
Q ss_pred CCccccCCC--CCCCCeEEEEeecCCceEEEEcCccCCeeEe
Q 034538 19 LDTVFSCPF--CNHGTSVECRIDMKNLIGEAICNICQESFST 58 (92)
Q Consensus 19 l~~~F~CPf--C~~~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 58 (92)
..+.+.|.+ |+.. . + --..|..|+..|-.
T Consensus 22 ~~~~~~C~~~~Ck~~---~--~------l~f~C~~C~~~FC~ 52 (86)
T 1wfe_A 22 EHKSYSCSFKGCTDV---E--L------VAVICPYCEKNFCL 52 (86)
T ss_dssp CSCCEECCSTTCCCE---E--S------SCEECTTTCCEECG
T ss_pred CCCCCCCCCcCCCCC---C--c------cceECCCCCccccc
Confidence 345688999 9862 1 1 13489999998864
No 319
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}
Probab=21.39 E-value=32 Score=24.44 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=31.8
Q ss_pred CCCCCeEEEEeecC-CceEEEEcCccCCeeEeecCCCCcchhhhhhHHHHHHhhcCc
Q 034538 28 CNHGTSVECRIDMK-NLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNNL 83 (92)
Q Consensus 28 C~~~~sV~vkidk~-~~~g~l~C~~Cg~~~~~~i~~L~epVDVYs~WiD~~~~~n~~ 83 (92)
|..-..+.+..+.. .-+|+++-+.|+.. ..+.++.-|--|.+||+.-.+...+
T Consensus 227 gDSGgPlv~~~~~~~~l~GIvS~g~c~~~---~~p~vyt~V~~y~~WI~~~~~~~~~ 280 (283)
T 3f1s_B 227 WMDGSVVTREHRGSWFLTGVLGSQPVGGQ---AHMVLVTKVSRYSLWFKQIMNAHHH 280 (283)
T ss_dssp BCTTCEEEEECSSCEEEEEEECCCSGGGC---SSEEEEEEGGGGHHHHHHHHTC---
T ss_pred CCCCCcEEEEECCEEEEEEEEEeCCCCCC---CcceEEEEhHHhHHHHHHHhhcchh
Confidence 56655666652211 15788887777642 1344667778899999987766554
No 320
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=21.29 E-value=80 Score=20.02 Aligned_cols=27 Identities=22% Similarity=0.635 Sum_probs=18.3
Q ss_pred cccCCCCCCCCeEEEEeecCCceE-EEEcCccCCeeEee
Q 034538 22 VFSCPFCNHGTSVECRIDMKNLIG-EAICNICQESFSTT 59 (92)
Q Consensus 22 ~F~CPfC~~~~sV~vkidk~~~~g-~l~C~~Cg~~~~~~ 59 (92)
.-.|..|+. +.++. -..|+ ||..|-..
T Consensus 25 ~~rC~~C~k----------kvgl~~~f~Cr-Cg~~FC~~ 52 (85)
T 1wff_A 25 MKHCFLCGK----------KTGLATSFECR-CGNNFCAS 52 (85)
T ss_dssp CCBCSSSCC----------BCSSSSCEECT-TCCEECTT
T ss_pred CccchhhCC----------eecccCCeEcC-CCCEeccc
Confidence 357999986 23332 47897 99988664
No 321
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=21.12 E-value=30 Score=18.88 Aligned_cols=10 Identities=20% Similarity=0.614 Sum_probs=6.2
Q ss_pred ccccCCCCCC
Q 034538 21 TVFSCPFCNH 30 (92)
Q Consensus 21 ~~F~CPfC~~ 30 (92)
..|.||.||.
T Consensus 8 ~~~~C~~C~~ 17 (39)
T 2i5o_A 8 DQVPCEKCGS 17 (39)
T ss_dssp CEEECTTTCC
T ss_pred CCcccccccC
Confidence 3466777764
No 322
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.80 E-value=31 Score=19.83 Aligned_cols=46 Identities=13% Similarity=0.297 Sum_probs=27.9
Q ss_pred CCCCccccCCCCCCCCeEEEEeecC-----CceEEEEcCccCCeeEeecCCCCcch
Q 034538 17 DKLDTVFSCPFCNHGTSVECRIDMK-----NLIGEAICNICQESFSTTITALTEPI 67 (92)
Q Consensus 17 ~kl~~~F~CPfC~~~~sV~vkidk~-----~~~g~l~C~~Cg~~~~~~i~~L~epV 67 (92)
.-..+.+.|++|+. ++. ..+.. -+...+.|..||..|. ...|.+-.
T Consensus 12 ~c~~r~~~C~~C~~--~~~-~~~L~~H~~~c~~~~~~C~~C~~~~~--~~~l~~H~ 62 (75)
T 2d9k_A 12 ECPLRLAVCQHCDL--ELS-ILKLKEHEDYCGARTELCGNCGRNVL--VKDLKTHP 62 (75)
T ss_dssp CCCCCCEECSSSCC--EEC-HHHHHHHHHHHHHCEEECSSSCCEEE--TTGGGTHH
T ss_pred cCCCcccCCcccCh--Hhh-HHHHHHHHhHcCCCceEcccCCCcCc--HHHHHHHH
Confidence 34457899999986 342 11111 2445699999999654 34454433
No 323
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=20.69 E-value=29 Score=22.57 Aligned_cols=16 Identities=25% Similarity=0.721 Sum_probs=14.4
Q ss_pred eeEeecCCCCcchhhh
Q 034538 55 SFSTTITALTEPIDIY 70 (92)
Q Consensus 55 ~~~~~i~~L~epVDVY 70 (92)
.|+..+.+=..|||||
T Consensus 86 ~yqi~LkS~~GPIdV~ 101 (106)
T 2aze_B 86 NFQISLKSKQGPIDVF 101 (106)
T ss_dssp CEEEEEECSSSCCEEE
T ss_pred ceEEEEECCCCCEEEE
Confidence 6999888888999998
No 324
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=20.68 E-value=23 Score=29.81 Aligned_cols=14 Identities=21% Similarity=0.840 Sum_probs=11.2
Q ss_pred ccccCCCCCCCCeE
Q 034538 21 TVFSCPFCNHGTSV 34 (92)
Q Consensus 21 ~~F~CPfC~~~~sV 34 (92)
+.|.|+||++.+.|
T Consensus 85 ~~W~C~~C~~~N~~ 98 (769)
T 2nut_A 85 KLWACNFCYQRNQF 98 (769)
T ss_dssp TEEECSSSCCEEEC
T ss_pred CEEEccCCCCCCCC
Confidence 57999999987654
No 325
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=20.51 E-value=34 Score=20.72 Aligned_cols=10 Identities=30% Similarity=0.916 Sum_probs=5.6
Q ss_pred ccccCCCCCC
Q 034538 21 TVFSCPFCNH 30 (92)
Q Consensus 21 ~~F~CPfC~~ 30 (92)
+.|.|+.|+.
T Consensus 99 ~~~~C~~C~k 108 (129)
T 2wbt_A 99 HTKVCPVCKK 108 (129)
T ss_dssp CCCBCTTTCC
T ss_pred CCCCCCCCCc
Confidence 3466666653
No 326
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=20.48 E-value=35 Score=20.03 Aligned_cols=40 Identities=23% Similarity=0.408 Sum_probs=21.0
Q ss_pred CCccccCCCCCCCCeEEEEeecC--CceEEEEcCccCCeeEe
Q 034538 19 LDTVFSCPFCNHGTSVECRIDMK--NLIGEAICNICQESFST 58 (92)
Q Consensus 19 l~~~F~CPfC~~~~sV~vkidk~--~~~g~l~C~~Cg~~~~~ 58 (92)
-++.|.|+.|+..-.-.-.+..- .-.....|..|+..|..
T Consensus 13 ~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~C~~C~~~f~~ 54 (107)
T 1wjp_A 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFS 54 (107)
T ss_dssp CCCCCBCTTTCCBCSSHHHHHHHHHHHHHSBCCTTTCCCBSS
T ss_pred CCcCeECCCCCCccCCHHHHHHHHHHCCCCccCCCCCCccCC
Confidence 35679999999631100000000 00123579999988754
No 327
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=20.34 E-value=59 Score=21.06 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=20.5
Q ss_pred EEEEcCccCCeeEeecCCCCcchhhh
Q 034538 45 GEAICNICQESFSTTITALTEPIDIY 70 (92)
Q Consensus 45 g~l~C~~Cg~~~~~~i~~L~epVDVY 70 (92)
-.-.|..||+.|.-+--+-.|+=-||
T Consensus 50 F~FkCP~CgEEFyG~~Lp~~EaeKVF 75 (95)
T 2k5c_A 50 FVFKCPVCGEEFYGKTLPRREAEKVF 75 (95)
T ss_dssp SEEECTTTCCEEETTSSCTTTHHHHH
T ss_pred HhhcCCCccHHHhcccCChHHHHHHH
Confidence 35799999999998777777776555
No 328
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.17 E-value=35 Score=17.23 Aligned_cols=11 Identities=36% Similarity=0.866 Sum_probs=7.9
Q ss_pred CccccCC--CCCC
Q 034538 20 DTVFSCP--FCNH 30 (92)
Q Consensus 20 ~~~F~CP--fC~~ 30 (92)
++.|.|+ .|+.
T Consensus 16 ~k~~~C~~~~C~k 28 (47)
T 1ncs_A 16 DKTFECLFPGCTK 28 (47)
T ss_dssp TTEEECCCTTCCC
T ss_pred CCCeECCCCCCCC
Confidence 4678995 5885
No 329
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=20.16 E-value=32 Score=22.05 Aligned_cols=30 Identities=17% Similarity=0.447 Sum_probs=18.3
Q ss_pred CCCccccCCCCCCCCeEEEEeecCCceEEE-EcCccCCe
Q 034538 18 KLDTVFSCPFCNHGTSVECRIDMKNLIGEA-ICNICQES 55 (92)
Q Consensus 18 kl~~~F~CPfC~~~~sV~vkidk~~~~g~l-~C~~Cg~~ 55 (92)
..|-.|.|+.||+.-.+ +. ... .|..||..
T Consensus 69 ~~p~~~~C~~CG~~~e~----~~----~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 69 DEKVELECKDCSHVFKP----NA----LDYGVCEKCHSK 99 (119)
T ss_dssp EECCEEECSSSSCEECS----CC----STTCCCSSSSSC
T ss_pred eccceEEcCCCCCEEeC----CC----CCCCcCccccCC
Confidence 34667888888874222 11 234 68888864
No 330
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=20.16 E-value=12 Score=26.08 Aligned_cols=14 Identities=7% Similarity=-0.021 Sum_probs=9.5
Q ss_pred hhhhhHHHHHHhhc
Q 034538 68 DIYSEWIDECERVN 81 (92)
Q Consensus 68 DVYs~WiD~~~~~n 81 (92)
+-|-++.|++.+..
T Consensus 77 ~~f~~~~~~Lf~~q 90 (205)
T 3gmf_A 77 SRFFTLHTAFMRSQ 90 (205)
T ss_dssp HHHHHHHHHHHHTH
T ss_pred hHHHHHHHHHHHcC
Confidence 56777777777644
Done!