BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034542
(92 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LGN1|GLR14_ARATH Glutamate receptor 1.4 OS=Arabidopsis thaliana GN=GLR1.4 PE=2
SV=2
Length = 861
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 11 FFSSLILLIIHLCPSCSELEKVKN--NTSFTADEVHVGVILDMRSWSGKISNSCISMAIA 68
F + L I +CS + N ++V +G+++DM S GK+ + ISMA++
Sbjct: 12 FLTIFFLAFISFAVTCSGTNQKDNVDRLPVVYEDVRIGLVVDMGSMEGKLVTTSISMALS 71
Query: 69 DFYALNTHYKTRLVLHSRDSQG 90
DFY +N Y+TR+ + SRDS G
Sbjct: 72 DFYHVNNGYRTRVSVLSRDSHG 93
>sp|Q9M8W7|GLR11_ARATH Glutamate receptor 1.1 OS=Arabidopsis thaliana GN=GLR1.1 PE=2
SV=1
Length = 808
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 36/50 (72%)
Query: 41 DEVHVGVILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQG 90
+EV VG+++D+ S GKI + ++A++DFY +N Y+TR+ + RDSQG
Sbjct: 28 EEVRVGLVVDLSSIQGKILETSFNLALSDFYGINNGYRTRVSVLVRDSQG 77
>sp|Q9LV72|GLR12_ARATH Glutamate receptor 1.2 OS=Arabidopsis thaliana GN=GLR1.2 PE=2
SV=1
Length = 867
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 36/58 (62%)
Query: 33 KNNTSFTADEVHVGVILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQG 90
+NN V VG++LD+ S GKI S +SMA++DFY + YKTRL L RDS G
Sbjct: 30 QNNDDDKRIRVRVGLVLDLGSVEGKIVRSSVSMALSDFYDNHNDYKTRLSLLVRDSHG 87
>sp|O81078|GLR29_ARATH Glutamate receptor 2.9 OS=Arabidopsis thaliana GN=GLR2.9 PE=2
SV=1
Length = 940
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Query: 33 KNNTSFTADEVHVGVILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDS 88
+N TS E+ VGV+LD+ + KI + I MA++DFYA + +Y TRL LH RDS
Sbjct: 24 QNQTS----EIKVGVVLDLNTTFSKICLTSIKMAVSDFYADHPNYLTRLTLHVRDS 75
>sp|Q9C5V5|GLR28_ARATH Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=GLR2.8 PE=2
SV=2
Length = 947
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 34/47 (72%)
Query: 42 EVHVGVILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDS 88
E+ VGV+LD+ + KI + I++A++DFY + +Y+TRL LH RDS
Sbjct: 32 EIKVGVVLDLNTTFSKICLTSINLALSDFYKDHPNYRTRLALHVRDS 78
>sp|Q9FH75|GLR13_ARATH Glutamate receptor 1.3 OS=Arabidopsis thaliana GN=GLR1.3 PE=2
SV=1
Length = 860
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 35/49 (71%)
Query: 42 EVHVGVILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQG 90
++ VG++LD+ S GKI + +SMA++ FYA++ YKTR+ + R+S G
Sbjct: 41 QIRVGLVLDLGSLKGKIVKNSVSMALSYFYAIHNDYKTRVSVSLRNSHG 89
>sp|Q8LGN0|GLR27_ARATH Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2
SV=3
Length = 952
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 33/47 (70%)
Query: 42 EVHVGVILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDS 88
E+ VGV+LD+ + K+ + I+++++DFY ++ Y TRL +H RDS
Sbjct: 38 EIKVGVVLDLHTSFSKLCLTSINISLSDFYKYHSDYTTRLAIHIRDS 84
>sp|Q9LFN8|GLR26_ARATH Glutamate receptor 2.6 OS=Arabidopsis thaliana GN=GLR2.6 PE=2
SV=2
Length = 967
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 42 EVHVGVILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQ 89
+V VG++LD + +S I+M++++FY + +KTR+VL+ RDS+
Sbjct: 35 QVQVGIVLDTNATLAALSLRAINMSLSEFYNTHNGFKTRIVLNIRDSK 82
>sp|Q9SHV1|GLR22_ARATH Glutamate receptor 2.2 OS=Arabidopsis thaliana GN=GLR2.2 PE=2
SV=1
Length = 920
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 34/48 (70%)
Query: 42 EVHVGVILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQ 89
+V++GV+ D+ + ++ CI+M++ADFY+ ++TRLV++ DS+
Sbjct: 31 QVNIGVVSDVGTSYPDVAMLCINMSLADFYSSRPQFQTRLVVNVGDSK 78
>sp|Q9SHV2|GLR23_ARATH Glutamate receptor 2.3 OS=Arabidopsis thaliana GN=GLR2.3 PE=2
SV=1
Length = 895
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 6 KKEQAFFSSLILLIIHLCPSCSELEKVKNNTSFTADEVHVGVILDMRSWSGKISNSCISM 65
+ E+ FF L++ C E + +NN D V + S K+ CI+M
Sbjct: 2 RTEKLFFCILLVFFF-----CLEFNRGQNNGKTLVDVGVVTDVDTSHS---KVVMLCINM 53
Query: 66 AIADFYALNTHYKTRLVLHSRDSQ 89
+I+DFY+ N ++TRLV++ DS+
Sbjct: 54 SISDFYSSNPQFETRLVVNVGDSK 77
>sp|O04660|GLR21_ARATH Glutamate receptor 2.1 OS=Arabidopsis thaliana GN=GLR2.1 PE=2
SV=2
Length = 901
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 6 KKEQAFFSSLILLIIHLCPSCSELEKVKNNTSFTADEVHVGVILDMRSWSGKISNSCISM 65
K+E SL+ +I E + N V+VG++ D+ + ++ CI+M
Sbjct: 2 KRENNLVLSLLFFVIVFLMQVGEAQNRITN-------VNVGIVNDIGTAYSNMTLLCINM 54
Query: 66 AIADFYALNTHYKTRLVLHSRDSQ 89
+++DFY+ + +TRLV DS+
Sbjct: 55 SLSDFYSSHPETQTRLVTTVVDSK 78
>sp|Q9LFN5|GLR25_ARATH Glutamate receptor 2.5 OS=Arabidopsis thaliana GN=GLR2.5 PE=1
SV=2
Length = 918
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 40 ADEVHVGVILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQ 89
A +V VG++L +S I+M++++FY + +KTR+VL+ RDS+
Sbjct: 34 ALQVKVGIVLGSNVTLADLSLRAINMSLSEFYNTHNGFKTRIVLNVRDSK 83
>sp|O81776|GLR24_ARATH Glutamate receptor 2.4 OS=Arabidopsis thaliana GN=GLR2.4 PE=2
SV=2
Length = 896
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 36/59 (61%)
Query: 31 KVKNNTSFTADEVHVGVILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQ 89
K+ + T ++VGV+ D+ + + +S I+M+++DFY+ +TRL+L+ DS+
Sbjct: 20 KLGKGQNTTIQVINVGVVTDVGTTASNLSLLAINMSLSDFYSSRPESRTRLLLNFADSR 78
>sp|Q11U19|CH60_CYTH3 60 kDa chaperonin OS=Cytophaga hutchinsonii (strain ATCC 33406 /
NCIMB 9469) GN=groL PE=3 SV=1
Length = 542
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 41 DEVHVGVILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQG 90
D+ +I D++ S KISNS +A A N H +++ H+ D G
Sbjct: 120 DKAVSAIIADLKVQSKKISNSNEIAQVATISANNDHEIGKMIAHAMDKVG 169
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,685,868
Number of Sequences: 539616
Number of extensions: 1013838
Number of successful extensions: 1835
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1821
Number of HSP's gapped (non-prelim): 15
length of query: 92
length of database: 191,569,459
effective HSP length: 62
effective length of query: 30
effective length of database: 158,113,267
effective search space: 4743398010
effective search space used: 4743398010
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)