Query 034542
Match_columns 92
No_of_seqs 105 out of 218
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 03:56:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034542.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034542hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06394 PBP1_iGluR_Kainate_KA1 98.8 8.2E-09 1.8E-13 80.9 4.8 48 44-91 1-49 (333)
2 cd06391 PBP1_iGluR_delta_2 N-t 97.9 1.1E-05 2.4E-10 64.4 4.2 43 44-89 1-46 (400)
3 cd06382 PBP1_iGluR_Kainate N-t 97.8 2.9E-05 6.4E-10 57.9 4.8 46 44-91 1-48 (327)
4 cd06392 PBP1_iGluR_delta_1 N-t 97.6 9E-05 2E-09 60.0 4.3 46 44-92 1-48 (400)
5 cd06366 PBP1_GABAb_receptor Li 97.6 0.00018 3.9E-09 54.1 5.6 49 44-92 1-51 (350)
6 PRK15404 leucine ABC transport 97.5 0.00025 5.5E-09 55.1 6.3 53 40-92 23-78 (369)
7 cd06358 PBP1_NHase Type I peri 97.5 0.00023 5E-09 53.4 5.6 49 44-92 1-52 (333)
8 cd06346 PBP1_ABC_ligand_bindin 97.4 0.00022 4.8E-09 53.2 4.4 49 44-92 1-52 (312)
9 cd06368 PBP1_iGluR_non_NMDA_li 97.4 0.00029 6.3E-09 52.1 4.8 45 44-91 1-47 (324)
10 cd06380 PBP1_iGluR_AMPA N-term 97.4 0.00019 4.2E-09 55.0 3.9 44 44-90 1-45 (382)
11 cd06348 PBP1_ABC_ligand_bindin 97.4 0.00045 9.8E-09 51.8 5.4 49 44-92 1-52 (344)
12 cd06370 PBP1_Speract_GC_like L 97.3 0.00036 7.8E-09 54.5 4.9 50 43-92 1-55 (404)
13 cd06344 PBP1_ABC_ligand_bindin 97.3 0.00054 1.2E-08 51.4 5.6 49 44-92 1-51 (332)
14 cd06393 PBP1_iGluR_Kainate_Glu 97.3 0.00058 1.3E-08 53.0 5.8 49 42-90 2-55 (384)
15 cd06357 PBP1_AmiC Periplasmic 97.3 0.00064 1.4E-08 52.2 5.5 49 44-92 1-52 (360)
16 cd06356 PBP1_Amide_Urea_BP_lik 97.2 0.00066 1.4E-08 51.4 5.3 49 44-92 1-52 (334)
17 cd06331 PBP1_AmiC_like Type I 97.2 0.00092 2E-08 50.0 5.6 49 44-92 1-52 (333)
18 TIGR03407 urea_ABC_UrtA urea A 97.2 0.00083 1.8E-08 51.5 5.5 49 43-91 1-52 (359)
19 cd06345 PBP1_ABC_ligand_bindin 97.2 0.001 2.2E-08 50.1 5.6 49 44-92 1-52 (344)
20 cd06343 PBP1_ABC_ligand_bindin 97.2 0.0012 2.5E-08 49.9 5.9 52 40-91 4-58 (362)
21 cd06347 PBP1_ABC_ligand_bindin 97.1 0.0012 2.6E-08 48.5 5.3 49 44-92 1-52 (334)
22 cd06355 PBP1_FmdD_like Peripla 97.1 0.0012 2.6E-08 50.4 5.4 49 44-92 1-52 (348)
23 cd06385 PBP1_NPR_A Ligand-bind 97.1 0.0011 2.3E-08 51.5 5.2 48 44-91 1-53 (405)
24 cd06330 PBP1_Arsenic_SBP_like 97.0 0.0016 3.4E-08 48.8 5.5 48 44-91 1-51 (346)
25 cd04509 PBP1_ABC_transporter_G 97.0 0.0017 3.8E-08 45.5 5.4 48 44-91 1-51 (299)
26 cd06333 PBP1_ABC-type_HAAT_lik 97.0 0.0017 3.7E-08 47.9 5.4 47 44-91 1-50 (312)
27 cd06349 PBP1_ABC_ligand_bindin 97.0 0.0016 3.4E-08 48.8 5.0 49 44-92 1-52 (340)
28 PF13458 Peripla_BP_6: Peripla 97.0 0.0019 4.1E-08 47.6 5.3 50 42-91 1-53 (343)
29 cd06352 PBP1_NPR_GC_like Ligan 96.9 0.0019 4.2E-08 49.2 4.7 48 44-91 1-52 (389)
30 TIGR03669 urea_ABC_arch urea A 96.8 0.0028 6.1E-08 49.8 5.6 50 43-92 1-53 (374)
31 cd06268 PBP1_ABC_transporter_L 96.8 0.0032 6.9E-08 44.2 5.1 48 44-91 1-51 (298)
32 cd06338 PBP1_ABC_ligand_bindin 96.8 0.0034 7.3E-08 46.9 5.5 48 44-91 1-55 (345)
33 cd06342 PBP1_ABC_LIVBP_like Ty 96.8 0.003 6.4E-08 46.6 5.1 49 44-92 1-52 (334)
34 cd06329 PBP1_SBP_like_3 Peripl 96.7 0.0043 9.2E-08 46.9 5.3 49 44-92 1-52 (342)
35 COG0683 LivK ABC-type branched 96.6 0.0073 1.6E-07 47.0 6.2 52 41-92 9-63 (366)
36 cd06334 PBP1_ABC_ligand_bindin 96.6 0.0033 7.1E-08 48.6 4.2 49 44-92 1-52 (351)
37 cd06326 PBP1_STKc_like Type I 96.5 0.0065 1.4E-07 44.9 5.5 49 43-91 1-52 (336)
38 cd06335 PBP1_ABC_ligand_bindin 96.5 0.0056 1.2E-07 46.5 5.2 49 44-92 1-52 (347)
39 cd06340 PBP1_ABC_ligand_bindin 96.5 0.0053 1.1E-07 46.6 4.9 48 44-91 1-54 (347)
40 cd06328 PBP1_SBP_like_2 Peripl 96.5 0.0081 1.8E-07 45.4 5.7 49 44-92 1-53 (333)
41 cd06327 PBP1_SBP_like_1 Peripl 96.4 0.0051 1.1E-07 46.1 4.2 47 44-92 1-51 (334)
42 cd06374 PBP1_mGluR_groupI Liga 96.4 0.0095 2.1E-07 47.8 6.0 52 40-91 7-76 (472)
43 cd06341 PBP1_ABC_ligand_bindin 96.4 0.0092 2E-07 44.6 5.5 48 44-91 1-51 (341)
44 cd06336 PBP1_ABC_ligand_bindin 96.3 0.0062 1.3E-07 46.2 4.3 49 44-92 1-56 (347)
45 cd06350 PBP1_GPCR_family_C_lik 96.1 0.016 3.5E-07 43.2 5.6 48 45-92 2-63 (348)
46 cd06362 PBP1_mGluR Ligand bind 96.1 0.015 3.3E-07 45.7 5.7 38 54-91 27-65 (452)
47 cd06364 PBP1_CaSR Ligand-bindi 96.1 0.02 4.4E-07 47.1 6.5 54 38-91 8-84 (510)
48 cd06372 PBP1_GC_G_like Ligand- 95.9 0.018 3.8E-07 44.4 5.2 48 45-92 2-53 (391)
49 cd06383 PBP1_iGluR_AMPA_Like N 95.9 0.012 2.6E-07 46.5 4.4 35 51-88 6-40 (368)
50 cd06363 PBP1_Taste_receptor Li 95.9 0.026 5.7E-07 44.2 6.2 36 54-89 39-75 (410)
51 KOG1055 GABA-B ion channel rec 95.9 0.023 4.9E-07 51.1 6.4 51 42-92 41-97 (865)
52 cd06376 PBP1_mGluR_groupIII Li 95.8 0.025 5.4E-07 45.2 5.8 50 42-91 2-65 (463)
53 cd06371 PBP1_sensory_GC_DEF_li 95.6 0.023 5E-07 44.4 4.7 48 44-91 1-52 (382)
54 cd06365 PBP1_Pheromone_recepto 95.5 0.036 7.9E-07 44.8 5.9 38 54-91 36-74 (469)
55 cd06367 PBP1_iGluR_NMDA N-term 95.5 0.017 3.7E-07 44.0 3.6 46 42-91 2-47 (362)
56 cd06361 PBP1_GPC6A_like Ligand 95.4 0.04 8.6E-07 43.8 5.7 38 54-92 32-70 (403)
57 cd06375 PBP1_mGluR_groupII Lig 95.2 0.053 1.1E-06 43.8 5.7 38 54-91 27-65 (458)
58 cd06373 PBP1_NPR_like Ligand b 95.1 0.047 1E-06 42.2 5.1 47 44-90 1-52 (396)
59 cd06351 PBP1_iGluR_N_LIVBP_lik 95.0 0.05 1.1E-06 39.6 4.7 43 44-89 1-44 (328)
60 cd06359 PBP1_Nba_like Type I p 94.8 0.078 1.7E-06 39.8 5.4 46 44-91 1-49 (333)
61 cd06339 PBP1_YraM_LppC_lipopro 94.5 0.056 1.2E-06 41.2 4.1 41 44-90 1-44 (336)
62 cd06386 PBP1_NPR_C_like Ligand 94.4 0.072 1.6E-06 41.6 4.6 37 55-91 15-52 (387)
63 cd06269 PBP1_glutamate_recepto 94.1 0.13 2.9E-06 36.1 5.0 48 44-91 1-51 (298)
64 PF13433 Peripla_BP_5: Peripla 93.4 0.17 3.7E-06 41.5 5.1 49 43-91 1-52 (363)
65 cd06332 PBP1_aromatic_compound 93.2 0.27 5.8E-06 36.1 5.4 46 44-91 1-49 (333)
66 cd06360 PBP1_alkylbenzenes_lik 92.6 0.39 8.5E-06 35.5 5.6 46 44-91 1-49 (336)
67 cd06384 PBP1_NPR_B Ligand-bind 92.4 0.32 6.9E-06 37.9 5.2 34 58-91 19-53 (399)
68 cd06379 PBP1_iGluR_NMDA_NR1 N- 90.7 0.95 2.1E-05 34.8 6.1 29 40-73 17-45 (377)
69 cd06337 PBP1_ABC_ligand_bindin 90.5 0.43 9.4E-06 36.5 4.1 49 44-92 1-54 (357)
70 cd06381 PBP1_iGluR_delta_like 89.4 0.52 1.1E-05 37.2 3.8 45 44-91 1-47 (363)
71 PF01094 ANF_receptor: Recepto 85.6 1.5 3.2E-05 32.0 4.1 31 59-89 2-33 (348)
72 cd06377 PBP1_iGluR_NMDA_NR3 N- 80.3 4.7 0.0001 33.1 5.5 44 41-88 17-61 (382)
73 cd06387 PBP1_iGluR_AMPA_GluR3 76.7 4.7 0.0001 32.2 4.4 40 44-86 1-42 (372)
74 cd06388 PBP1_iGluR_AMPA_GluR4 73.3 5.7 0.00012 31.3 4.0 40 44-86 1-42 (371)
75 TIGR03863 PQQ_ABC_bind ABC tra 72.7 6.2 0.00013 31.0 4.1 36 53-88 7-42 (347)
76 cd01391 Periplasmic_Binding_Pr 70.4 11 0.00025 25.2 4.5 41 44-91 1-43 (269)
77 cd06390 PBP1_iGluR_AMPA_GluR1 64.1 7.9 0.00017 30.6 3.1 28 44-74 1-28 (364)
78 TIGR02848 spore_III_AC stage I 54.7 13 0.00028 24.0 2.3 17 4-20 26-42 (64)
79 PF15583 Imm41: Immunity prote 50.4 51 0.0011 24.6 5.2 55 14-77 78-133 (158)
80 cd06389 PBP1_iGluR_AMPA_GluR2 50.1 22 0.00049 27.8 3.5 36 44-86 1-36 (370)
81 PRK10936 TMAO reductase system 49.3 63 0.0014 24.7 5.8 49 19-70 26-75 (343)
82 PF07769 PsiF_repeat: psiF rep 40.6 15 0.00033 21.1 0.9 15 2-16 20-34 (35)
83 KOG1611 Predicted short chain- 39.5 67 0.0015 25.6 4.6 55 15-72 120-187 (249)
84 cd06325 PBP1_ABC_uncharacteriz 35.3 1.2E+02 0.0026 21.4 5.1 44 44-90 1-44 (281)
85 PF14967 FAM70: FAM70 protein 33.0 15 0.00032 30.3 0.1 23 38-60 50-77 (327)
86 TIGR03475 tap_IncFII_lead RepA 30.0 42 0.0009 18.2 1.5 14 6-19 3-16 (26)
87 cd01536 PBP1_ABC_sugar_binding 25.8 1.4E+02 0.003 20.6 4.0 26 44-69 1-27 (267)
88 PF06117 DUF957: Enterobacteri 25.4 1E+02 0.0022 20.0 3.0 28 45-72 25-54 (65)
89 PF15621 PROL5-SMR: Proline-ri 25.0 45 0.00099 23.6 1.4 19 7-25 2-20 (113)
90 cd01480 vWA_collagen_alpha_1-V 24.9 2.5E+02 0.0054 19.6 6.5 31 42-72 2-36 (186)
91 PF08048 RepA1_leader: Tap Rep 23.1 67 0.0015 17.2 1.5 14 6-19 3-16 (25)
92 PRK15395 methyl-galactoside AB 22.4 3.5E+02 0.0076 20.5 6.8 47 12-70 6-53 (330)
93 PF10749 DUF2534: Protein of u 20.9 89 0.0019 21.2 2.1 21 2-22 6-26 (85)
No 1
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=98.77 E-value=8.2e-09 Score=80.93 Aligned_cols=48 Identities=13% Similarity=0.075 Sum_probs=43.8
Q ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHhccCCCce-eEEEEEeecCCCC
Q 034542 44 HVGVILDMRSWSGKISNSCISMAIADFYALNTHYK-TRLVLHSRDSQGI 91 (92)
Q Consensus 44 ~IGaIlDl~S~iGK~a~~aIemAveDfna~~~~~~-TrL~L~~rDS~~~ 91 (92)
+||+|||.+|.+|+.++.|++||++|||++...++ ++|+++++|.+.+
T Consensus 1 ~iG~i~d~~s~~G~~~~~a~~lAv~~iN~~~~~~~~~~l~~~~~d~~~d 49 (333)
T cd06394 1 RIAAILDDPMECGRGERLALALARERINRAPERLGKARVEVDIFELLRD 49 (333)
T ss_pred CceeeecCCccccHHHHHHHHHHHHHhccCccccCCceeEEEEeecccc
Confidence 58999999999999999999999999998876664 7999999998875
No 2
>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a
Probab=97.92 E-value=1.1e-05 Score=64.42 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=35.5
Q ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHhccCCCce-e--EEEEEeecCC
Q 034542 44 HVGVILDMRSWSGKISNSCISMAIADFYALNTHYK-T--RLVLHSRDSQ 89 (92)
Q Consensus 44 ~IGaIlDl~S~iGK~a~~aIemAveDfna~~~~~~-T--rL~L~~rDS~ 89 (92)
+||+|||.+|..|++ |++||++|+|+++..+. + ++.++..|+.
T Consensus 1 ~IGaif~~~s~~~~~---Af~~Ai~~iN~~~~~l~~~~l~~~~~~~d~~ 46 (400)
T cd06391 1 HIGAIFDESAKKDDE---VFRMAVADLNQNNEILQTEKITVSVTFVDGN 46 (400)
T ss_pred CcceeeccCCchHHH---HHHHHHHHhcCCccccCCCcceEEEEEeeCC
Confidence 489999999988864 99999999998876663 6 5555888884
No 3
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=97.83 E-value=2.9e-05 Score=57.95 Aligned_cols=46 Identities=15% Similarity=0.097 Sum_probs=41.0
Q ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCC-CC
Q 034542 44 HVGVILDMRSWSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQ-GI 91 (92)
Q Consensus 44 ~IGaIlDl~S~iGK~a~~aIemAveDfna~~~~~-~TrL~L~~rDS~-~~ 91 (92)
+||+||++ ..|+..+.|+++|++++|++...+ +.+|.+.++|+. ++
T Consensus 1 ~iG~i~~~--~~g~~~~~a~~lAv~~iN~~ggil~g~~l~~~~~d~~~~~ 48 (327)
T cd06382 1 RIGAIFDD--DDDSGEELAFRYAIDRINREKELLANTTLEYDIKRVKPDD 48 (327)
T ss_pred CeEEEecC--CCchHHHHHHHHHHHHhcccccccCCceEEEEEEEecCCC
Confidence 59999999 889999999999999999988766 488999999987 44
No 4
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel
Probab=97.57 E-value=9e-05 Score=60.00 Aligned_cols=46 Identities=11% Similarity=0.211 Sum_probs=39.3
Q ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHhccCCCce-eEEEEEe-ecCCCCC
Q 034542 44 HVGVILDMRSWSGKISNSCISMAIADFYALNTHYK-TRLVLHS-RDSQGIG 92 (92)
Q Consensus 44 ~IGaIlDl~S~iGK~a~~aIemAveDfna~~~~~~-TrL~L~~-rDS~~~g 92 (92)
.||+|||-++. .+..|.++|++|||.+.+.+. |+|++++ +|+++|+
T Consensus 1 ~iG~if~~~~~---~~~~af~~Av~~~N~~~~~l~~~~L~~~~~~~~~~d~ 48 (400)
T cd06392 1 HIGAIFEENAA---KDDRVFQLAVSDLSLNDDILQSEKITYSIKSIEANNP 48 (400)
T ss_pred CeeeccCCCch---HHHHHHHHHHHHhccCccccCCceEEEEEEecCCCCh
Confidence 48999998773 367999999999998887774 9999999 9999874
No 5
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=97.57 E-value=0.00018 Score=54.09 Aligned_cols=49 Identities=43% Similarity=0.604 Sum_probs=43.2
Q ss_pred EEEEEEecC-CcchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCCC
Q 034542 44 HVGVILDMR-SWSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQGIG 92 (92)
Q Consensus 44 ~IGaIlDl~-S~iGK~a~~aIemAveDfna~~~~~-~TrL~L~~rDS~~~g 92 (92)
+||+|++++ +..|+..+.++++|++++|+....+ +.+|++.++|++|+.
T Consensus 1 ~IG~~~p~sGa~~G~~~~~~~~lAv~~iN~~gg~~~g~~i~~~~~D~~~~~ 51 (350)
T cd06366 1 RIGAIFDLSGSWIGKAALPAIEMALEDVNADNSILPGYRLVLHVRDSKCDP 51 (350)
T ss_pred CEEEEEecCCCcccHHHHHHHHHHHHHHhcCCCcCCCcEEEEEecCCCCCH
Confidence 599999999 9999999999999999999876333 478999999999863
No 6
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=97.54 E-value=0.00025 Score=55.06 Aligned_cols=53 Identities=19% Similarity=0.142 Sum_probs=46.7
Q ss_pred cceEEEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCCC
Q 034542 40 ADEVHVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGIG 92 (92)
Q Consensus 40 ~~~V~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~g 92 (92)
..+|+||++..++ +..|+..+.++++|++++|+.....+.+++|.++|+++++
T Consensus 23 ~~~I~IG~l~plSG~~a~~G~~~~~g~~~av~~iNa~GGi~G~~ielv~~D~~~~p 78 (369)
T PRK15404 23 ADDIKIAIVGPMSGPVAQYGDMEFTGARQAIEDINAKGGIKGDKLEGVEYDDACDP 78 (369)
T ss_pred CCceEEEEeecCCCcchhcCHhHHHHHHHHHHHHHhcCCCCCeEEEEEeecCCCCH
Confidence 4479999999998 5579999999999999999987777789999999998764
No 7
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=97.51 E-value=0.00023 Score=53.41 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=43.4
Q ss_pred EEEEEEecCCc---chHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCCC
Q 034542 44 HVGVILDMRSW---SGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGIG 92 (92)
Q Consensus 44 ~IGaIlDl~S~---iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~g 92 (92)
+||++++++.+ .|+..+.++++|++++|+.....+.++.+.++|+++++
T Consensus 1 kIG~~~plsG~~a~~g~~~~~g~~la~~~iN~~gGi~G~~i~l~~~D~~~~p 52 (333)
T cd06358 1 RIGLLVPLSGPAGIFGPSCEAAAELAVEEINAAGGILGREVELVIVDDGSPP 52 (333)
T ss_pred CeEEEecCcCchhhcchhHHHHHHHHHHHHHhcCCcCCcEEEEEEECCCCCh
Confidence 48999998755 89999999999999999877766789999999999874
No 8
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=97.41 E-value=0.00022 Score=53.18 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=42.7
Q ss_pred EEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCCC
Q 034542 44 HVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGIG 92 (92)
Q Consensus 44 ~IGaIlDl~S---~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~g 92 (92)
+||++++++. ..|+....++++|++++|+.....+.+|++.++|+.++.
T Consensus 1 kIG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~G~~iel~~~D~~~~p 52 (312)
T cd06346 1 KIGILLPLTGDLASYGPPMADAAELAVKEVNAAGGVLGEPVTLVTADTQTDP 52 (312)
T ss_pred CceeeccCCCchhhcChhHHHHHHHHHHHHHHhCCCCCceEEEEECCCCCCH
Confidence 5899999984 568889999999999999887666789999999999863
No 9
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=97.40 E-value=0.00029 Score=52.13 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=38.5
Q ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHhccCCCce-eEEEEEeecCC-CC
Q 034542 44 HVGVILDMRSWSGKISNSCISMAIADFYALNTHYK-TRLVLHSRDSQ-GI 91 (92)
Q Consensus 44 ~IGaIlDl~S~iGK~a~~aIemAveDfna~~~~~~-TrL~L~~rDS~-~~ 91 (92)
+||+||+.++ +..+.|+++|++++|++...++ .+|.+.+.|++ ++
T Consensus 1 ~iG~i~~~~~---~~~~~a~~lAv~~iN~~ggil~~~~l~~~~~d~~~~~ 47 (324)
T cd06368 1 RIGAIFDEDA---RQEELAFRFAIDRINTNEEILAKFTLVPDIDELNTND 47 (324)
T ss_pred CEEEEeCCCC---hHHHHHHHHHHHHhcccccccCCceeeeEEEEecCCC
Confidence 5999999999 9999999999999999877664 68888888863 44
No 10
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=97.39 E-value=0.00019 Score=54.95 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=37.6
Q ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCC
Q 034542 44 HVGVILDMRSWSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQG 90 (92)
Q Consensus 44 ~IGaIlDl~S~iGK~a~~aIemAveDfna~~~~~-~TrL~L~~rDS~~ 90 (92)
+||+|||.+ ++.++.|+++|++|+|.+...+ +++|.+++++.++
T Consensus 1 ~iG~if~~~---~~~~~~a~~~Av~~iN~~~~~~~~~~l~~~~~~~~~ 45 (382)
T cd06380 1 PIGGLFDVD---EDQEYSAFRFAISQHNTNPNSTAPFKLLPHVDNLDT 45 (382)
T ss_pred CceeEECCC---ChHHHHHHHHHHHHhcccccccCCeeeeeeeeEecc
Confidence 489999999 6899999999999999876554 4899888988874
No 11
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=97.35 E-value=0.00045 Score=51.80 Aligned_cols=49 Identities=20% Similarity=0.197 Sum_probs=43.5
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCCC
Q 034542 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGIG 92 (92)
Q Consensus 44 ~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~g 92 (92)
+||++++++ +..|+..+.++++|++++|+.....+.++++.++|++++.
T Consensus 1 ~IG~~~plsG~~a~~g~~~~~g~~~a~~~iNa~ggi~G~~v~lv~~D~~~~p 52 (344)
T cd06348 1 PLGVALALTGNAALYGQEQLAGLKLAEDRFNQAGGVNGRPIKLVIEDSGGDE 52 (344)
T ss_pred CeeEEEeccCchhhcCHhHHHHHHHHHHHHhhcCCcCCcEEEEEEecCCCCh
Confidence 589999998 5679999999999999999877776789999999998863
No 12
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.
Probab=97.34 E-value=0.00036 Score=54.46 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=43.2
Q ss_pred EEEEEEEecC----CcchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCCC
Q 034542 43 VHVGVILDMR----SWSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQGIG 92 (92)
Q Consensus 43 V~IGaIlDl~----S~iGK~a~~aIemAveDfna~~~~~-~TrL~L~~rDS~~~g 92 (92)
|+||++..++ +..|+..+.|+++|++++|++...+ +.+|.+.++|++|+.
T Consensus 1 i~iG~~~pltG~~~a~~G~~~~~a~~lAv~~IN~~ggil~g~~l~l~~~D~~~~~ 55 (404)
T cd06370 1 IKVGYLAEWTTDRTDRLGLPISGALTLAVEDVNADPNLLPGYKLQFEWVDTHGDE 55 (404)
T ss_pred CeeEecccccCCccccccccHHHHHHHHHHHHhCCCCCCCCCEEEEEEEecCCCh
Confidence 5799999874 4779999999999999999987665 589999999999863
No 13
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=97.33 E-value=0.00054 Score=51.42 Aligned_cols=49 Identities=6% Similarity=-0.053 Sum_probs=43.7
Q ss_pred EEEEEEecC--CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCCC
Q 034542 44 HVGVILDMR--SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGIG 92 (92)
Q Consensus 44 ~IGaIlDl~--S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~g 92 (92)
+||++.+++ ...|+....++++|++++|+.....+.+++|.++|+++++
T Consensus 1 ~iG~~~p~sG~a~~G~~~~~g~~lA~~~iNa~ggi~G~~ielv~~D~~~~p 51 (332)
T cd06344 1 TIAVVVPIGKNPNLAEEILRGVAQAQTEINLQGGINGKLLKVVIANDGNDP 51 (332)
T ss_pred CeEEEEecCCChhhHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEECCCCCh
Confidence 489999988 7899999999999999999877666789999999999864
No 14
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=97.31 E-value=0.00058 Score=52.99 Aligned_cols=49 Identities=10% Similarity=0.017 Sum_probs=41.2
Q ss_pred eEEEEEEEecC----CcchHHHHHHHHHHHHHHhccCCCce-eEEEEEeecCCC
Q 034542 42 EVHVGVILDMR----SWSGKISNSCISMAIADFYALNTHYK-TRLVLHSRDSQG 90 (92)
Q Consensus 42 ~V~IGaIlDl~----S~iGK~a~~aIemAveDfna~~~~~~-TrL~L~~rDS~~ 90 (92)
+++||+|++.. +..|+..+.||++|++++|++...+. ++|...+++..+
T Consensus 2 ~i~IG~i~~~~tg~~~~~g~~~~~a~~~Av~~IN~~~~il~~~~l~~~~~~~~~ 55 (384)
T cd06393 2 VIRIGGIFEYLDGPNNQVMSAEELAFRFSANIINRNRTLLPNTTLTYDIQRIHF 55 (384)
T ss_pred eeeEEEeecCCcccccccCcHHHHHHHHHHHHhcCCCccCCCceEEEEEEeccc
Confidence 58999999943 56789999999999999999887764 888888888554
No 15
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Probab=97.26 E-value=0.00064 Score=52.19 Aligned_cols=49 Identities=18% Similarity=0.140 Sum_probs=44.2
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCCC
Q 034542 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGIG 92 (92)
Q Consensus 44 ~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~g 92 (92)
+||++++++ +..|+..+.+++||++++|+.....+.+++|.++|+.+++
T Consensus 1 kIG~~~plSG~~a~~g~~~~~g~~la~~~iN~~GGi~G~~ielv~~D~~~~p 52 (360)
T cd06357 1 RVGVLFSRTGVTAAIERSQRNGALLAIEEINAAGGVLGRELEPVEYDPGGDP 52 (360)
T ss_pred CeEEEEcCCCCchhccHHHHHHHHHHHHHHhhcCCCCCeEEEEEEECCCCCH
Confidence 599999998 7899999999999999999887777789999999998863
No 16
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=97.24 E-value=0.00066 Score=51.38 Aligned_cols=49 Identities=18% Similarity=0.180 Sum_probs=43.8
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCCC
Q 034542 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGIG 92 (92)
Q Consensus 44 ~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~g 92 (92)
+||++.+++ +..|+..+.++++|++++|+.....+.+++|.++|+++++
T Consensus 1 ~IG~~~~lSG~~a~~G~~~~~g~~la~~~iNa~gGi~Gr~v~lv~~D~~~~p 52 (334)
T cd06356 1 KVGSLEDRSGNFALYGTPKVHATQLAVDEINASGGILGREVELVDYDTQSDN 52 (334)
T ss_pred CeEEEecCCCchhhccHHHHHHHHHHHHHHHhcCCCCCceEEEEEECCCCCH
Confidence 589999998 6779999999999999999877777789999999999864
No 17
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=97.20 E-value=0.00092 Score=50.05 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=42.9
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCCC
Q 034542 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGIG 92 (92)
Q Consensus 44 ~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~g 92 (92)
+||++++++ +..|+..+.++++|++++|+.....+.++.+.++|+++++
T Consensus 1 ~IG~l~p~sG~~a~~g~~~~~g~~~a~~~iN~~gGi~G~~i~l~~~D~~~~p 52 (333)
T cd06331 1 KIGLLFSLSGPAAISEPSLRNAALLAIEEINAAGGILGRPLELVVEDPASDP 52 (333)
T ss_pred CeEEEecCCCccccccHHHHHHHHHHHHHHHhcCCCCCeEEEEEEECCCCCH
Confidence 489999987 4689999999999999999877666789999999999863
No 18
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=97.20 E-value=0.00083 Score=51.54 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=43.7
Q ss_pred EEEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 43 VHVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 43 V~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
|+||++..++ +..|+..+.++++|++++|+.....+.+++|..+|++++
T Consensus 1 I~IG~l~plsG~~a~~g~~~~~g~~lav~~iN~~GGi~G~~i~l~~~Dd~~~ 52 (359)
T TIGR03407 1 IKVGILHSLSGTMAISETTLKDAELMAIEEINASGGVLGKKIEPVVEDGASD 52 (359)
T ss_pred CeEEEEeCCCCchhhcchhHHHHHHHHHHHHHhcCCCCCcEEEEEEeCCCCC
Confidence 5899999986 688899999999999999988776678999999999886
No 19
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=97.16 E-value=0.001 Score=50.06 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=42.8
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCCC
Q 034542 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGIG 92 (92)
Q Consensus 44 ~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~g 92 (92)
+||++++++ +..|+....++++|++++|++....+.++++.++|+++++
T Consensus 1 ~IG~~~~lsG~~a~~G~~~~~g~~~A~~~iN~~ggi~g~~v~l~~~D~~~~~ 52 (344)
T cd06345 1 KIGVLAPLSGGASTTGEAMWNGAELAAEEINAAGGILGRKVELVFEDTEGSP 52 (344)
T ss_pred CeeEEEecCCcccccCHHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCH
Confidence 489999997 6789999999999999999876555678999999999863
No 20
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=97.16 E-value=0.0012 Score=49.91 Aligned_cols=52 Identities=13% Similarity=0.066 Sum_probs=46.2
Q ss_pred cceEEEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 40 ADEVHVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 40 ~~~V~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
+.+|+||++++++ ...|+..+.++++|++++|+.....+.+|+|.++|++++
T Consensus 4 ~~~i~iG~~~~~sG~~a~~g~~~~~g~~~a~~~~Na~gGi~G~~i~l~~~D~~~~ 58 (362)
T cd06343 4 DTEIKIGNTMPLSGPASAYGVIGRTGAAYFFMINNDQGGINGRKIELIVEDDGYS 58 (362)
T ss_pred CceEEEeeccCCCCchhhhcHHHHHHHHHHHHHHHhcCCcCCeEEEEEEecCCCC
Confidence 5689999999997 568999999999999999987777678999999999876
No 21
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=97.10 E-value=0.0012 Score=48.53 Aligned_cols=49 Identities=16% Similarity=0.223 Sum_probs=41.9
Q ss_pred EEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCCC
Q 034542 44 HVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGIG 92 (92)
Q Consensus 44 ~IGaIlDl~S---~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~g 92 (92)
+||++++++. ..|+....++++|++++|++....+.+|.+.++|+++++
T Consensus 1 ~iG~~~~~sG~~~~~g~~~~~g~~~a~~~iN~~ggi~g~~l~~~~~D~~~~~ 52 (334)
T cd06347 1 KIGVNLPLTGDVAAYGQSEKNGAKLAVKEINAAGGVLGKKIELVVEDNKSDK 52 (334)
T ss_pred CeeEEecCCchhhhcCHhHHHHHHHHHHHHHhcCCCCCeeEEEEEecCCCCh
Confidence 5899999985 567888899999999999886655689999999998873
No 22
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=97.09 E-value=0.0012 Score=50.36 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=42.9
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCCC
Q 034542 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGIG 92 (92)
Q Consensus 44 ~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~g 92 (92)
+||++..++ +..|+..+.+++||++++|+.-...+.+++|..+|+++++
T Consensus 1 kIG~~~plsG~~a~~G~~~~~g~~la~~~iN~~GGi~G~~ielv~~D~~~~p 52 (348)
T cd06355 1 KVGILHSLSGTMAISETTLKDAELLAIEEINAAGGVLGRKIEAVVEDGASDW 52 (348)
T ss_pred CeEEEEcCCCcccccchhHHHHHHHHHHHHHhcCCCCCcEEEEEEeCCCCCH
Confidence 589999887 5679999999999999999887776789999999999863
No 23
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=97.08 E-value=0.0011 Score=51.47 Aligned_cols=48 Identities=17% Similarity=0.050 Sum_probs=40.0
Q ss_pred EEEEEEecCCc---ch-HHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCC
Q 034542 44 HVGVILDMRSW---SG-KISNSCISMAIADFYALNTHY-KTRLVLHSRDSQGI 91 (92)
Q Consensus 44 ~IGaIlDl~S~---iG-K~a~~aIemAveDfna~~~~~-~TrL~L~~rDS~~~ 91 (92)
+||+++.++.+ .| +....|+++|++|+|++...+ +.+|.+..+|++++
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~~a~~lAve~IN~~~gil~g~~l~~~~~D~~~~ 53 (405)
T cd06385 1 TLAVILPLTNTSYPWAWPRVGPALERAIDRVNADPDLLPGLHLQYVLGSSENK 53 (405)
T ss_pred CeeEECCCCCCcCccchhhhHHHHHHHHHHHhcCCCCCCCceEEEEEcccccc
Confidence 58999976654 65 888899999999999987776 58999999998653
No 24
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=97.04 E-value=0.0016 Score=48.80 Aligned_cols=48 Identities=21% Similarity=0.262 Sum_probs=41.5
Q ss_pred EEEEEEecCCc---chHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 44 HVGVILDMRSW---SGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 44 ~IGaIlDl~S~---iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
+||++++++.+ .|+....++++|++|+|......+.++.+.++|++++
T Consensus 1 ~iG~l~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~G~~v~~~~~D~~~~ 51 (346)
T cd06330 1 KIGVITFLSGRAAIFGEPARNGAELAVEEINAAGGIGGRKIELVVRDEAGK 51 (346)
T ss_pred CeeEEeecCCchhhhcHHHHHHHHHHHHHHhhcCCcCCeEEEEEEecCCCC
Confidence 58999999764 5888999999999999987766668999999999876
No 25
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=97.04 E-value=0.0017 Score=45.53 Aligned_cols=48 Identities=19% Similarity=0.199 Sum_probs=41.3
Q ss_pred EEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 44 HVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 44 ~IGaIlDl~S---~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
+||+|++++. ..|+....++++|++++|+.....+.++.+.+.|+.++
T Consensus 1 ~IG~i~p~~g~~~~~~~~~~~~~~~a~~~~n~~~g~~g~~~~~~~~d~~~~ 51 (299)
T cd04509 1 KIGVLFPLSGPYAEYGAFRLAGAQLAVEEINAKGGIPGRKLELVIYDDQSD 51 (299)
T ss_pred CeeEEEcCCCcchhcCHHHHHHHHHHHHHHHhcCCCCCcEEEEEEecCCCC
Confidence 5999999984 68899999999999999987644458999999999875
No 26
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=97.00 E-value=0.0017 Score=47.92 Aligned_cols=47 Identities=15% Similarity=0.144 Sum_probs=41.3
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 44 ~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
+||++++++ +..|+....++++|++++|+ ....+.++.+.+.|++++
T Consensus 1 ~IG~~~~lsG~~~~~g~~~~~g~~~a~~~iN~-ggi~g~~i~l~~~d~~~~ 50 (312)
T cd06333 1 KIGAILSLTGPAASLGIPEKKTLELLPDEINA-GGIGGEKVELIVLDDGSD 50 (312)
T ss_pred CeeEEeecCCcchhhCHHHHHHHHHHHHHHhc-CCcCCeEEEEEEecCCCC
Confidence 489999998 78889999999999999998 555568899999999876
No 27
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=96.97 E-value=0.0016 Score=48.83 Aligned_cols=49 Identities=16% Similarity=0.100 Sum_probs=43.5
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCCC
Q 034542 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGIG 92 (92)
Q Consensus 44 ~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~g 92 (92)
+||++.+++ +..|+....++++|++++|++....+.+|+++++|+++++
T Consensus 1 ~IG~~~plsG~~a~~G~~~~~g~~~a~~~iN~~ggi~G~~i~l~~~D~~~~~ 52 (340)
T cd06349 1 LIGVAGPLTGDNAQYGTQWKRAFDLALDEINAAGGVGGRPLNIVFEDSKSDP 52 (340)
T ss_pred CeeEEecCCCcchhcCccHHHHHHHHHHHHHhhCCcCCeEEEEEEeCCCCCh
Confidence 489999996 6789999999999999999887776789999999999863
No 28
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=96.96 E-value=0.0019 Score=47.62 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=40.5
Q ss_pred eEEEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 42 EVHVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 42 ~V~IGaIlDl~S---~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
+++||++++++. ..|+....++++|++++|+.-...+.++.|.++|++++
T Consensus 1 ~i~IG~~~~~sG~~a~~g~~~~~g~~~a~~~~N~~ggi~G~~i~l~~~D~~~~ 53 (343)
T PF13458_consen 1 PIKIGVLVPLSGPFAPYGQDFLRGAELAVDEINAAGGINGRKIELVVYDDGGD 53 (343)
T ss_dssp SEEEEEEE-SSSTTHHHHHHHHHHHHHHHHHHHHTTEETTEEEEEEEEE-TT-
T ss_pred CEEEEEEECCCChhhhhhHHHHHHHHHHHHHHHHhCCcCCccceeeeccCCCC
Confidence 479999999975 57888999999999999987555568999999998875
No 29
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=96.85 E-value=0.0019 Score=49.21 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=41.6
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCC
Q 034542 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQGI 91 (92)
Q Consensus 44 ~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~~~-~TrL~L~~rDS~~~ 91 (92)
+||++++++ +..|+..+.|+++|++++|+....+ +.+|++.++|++++
T Consensus 1 kvG~~~~~sG~~~~~g~~~~~a~~lAve~iN~~g~~i~g~~l~~~~~D~~~~ 52 (389)
T cd06352 1 TVGVLLPWNTDYPFSLARVGPAIQLAVERVNADPNLLPGYDFTFVYLDTECS 52 (389)
T ss_pred CeEEEcCCCCCCCchhhcchHHHHHHHHHHhcCCCCCCCceEEEEEecCCCc
Confidence 489999886 6799999999999999999877433 57899999999986
No 30
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=96.83 E-value=0.0028 Score=49.85 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=44.4
Q ss_pred EEEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCCC
Q 034542 43 VHVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGIG 92 (92)
Q Consensus 43 V~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~g 92 (92)
|+||++..++ +..|+..+.++++|++++|+.-...+.+++|..+|+++++
T Consensus 1 IkIG~~~plSG~~a~~G~~~~~G~~lAv~~iNa~GGi~Gr~ielv~~D~~~~p 53 (374)
T TIGR03669 1 IKLGVLEDRSGNFALVGTPKWHASQLAIEEINKSGGILGRQIELIDPDPQSDN 53 (374)
T ss_pred CEEEEEeCCCCCchhccHHHHHHHHHHHHHHHhcCCCCCceeEEEEeCCCCCH
Confidence 5899999997 6789999999999999999887777789999999998763
No 31
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=96.79 E-value=0.0032 Score=44.17 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=41.6
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 44 ~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
+||++++.+ +..|.....++++|++++|+.....+.++.+.++|++++
T Consensus 1 ~ig~~~p~sg~~~~~~~~~~~g~~~a~~~~n~~gg~~g~~v~~~~~d~~~~ 51 (298)
T cd06268 1 KIGVLLPLSGPLAALGEPVRNGAELAVEEINAAGGILGRKIELVVEDTQGD 51 (298)
T ss_pred CeeeeecCcCchhhcChhHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCC
Confidence 489999987 689999999999999999987654568999999999875
No 32
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=96.79 E-value=0.0034 Score=46.86 Aligned_cols=48 Identities=17% Similarity=0.182 Sum_probs=40.6
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCC----CceeEEEEEeecCCCC
Q 034542 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNT----HYKTRLVLHSRDSQGI 91 (92)
Q Consensus 44 ~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~----~~~TrL~L~~rDS~~~ 91 (92)
+||++++++ +..|+..+.++++|++++|+... ..+.++++..+|++++
T Consensus 1 ~IG~~~p~sG~~a~~g~~~~~g~~la~~~iN~~ggi~~g~~g~~i~l~~~D~~~~ 55 (345)
T cd06338 1 RIGASLSLTGPLAGGGQLTQRGYELWVEDVNAAGGIKGGGKGYPVELIYYDDQSN 55 (345)
T ss_pred CeeEEEeCCCccccccHHHHHHHHHHHHHHHhcCCcccCCCCceEEEEEecCCCC
Confidence 589999988 67899999999999999998542 2347899999999886
No 33
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=96.78 E-value=0.003 Score=46.57 Aligned_cols=49 Identities=22% Similarity=0.178 Sum_probs=42.2
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCCC
Q 034542 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGIG 92 (92)
Q Consensus 44 ~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~g 92 (92)
+||++..++ +..|+....++++|++++|+.....+.++.+.+.|+++++
T Consensus 1 ~iG~~~p~sG~~~~~g~~~~~g~~~a~~~iN~~ggi~g~~i~~~~~D~~~~~ 52 (334)
T cd06342 1 KIGVAGPLTGPNAALGKDIKNGAQLAVEDINAKGGGKGVKLELVVEDDQADP 52 (334)
T ss_pred CeeEeccCCCcchhhcHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCCh
Confidence 489999986 5788999999999999999886555689999999999863
No 34
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=96.66 E-value=0.0043 Score=46.88 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=42.3
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCCC
Q 034542 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGIG 92 (92)
Q Consensus 44 ~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~g 92 (92)
+||++++++ +..|+..+.++++|++|+|+.....+.+++|.++|+++++
T Consensus 1 ~IG~l~p~sG~~a~~G~~~~~g~~~a~~~iN~~GGi~G~~i~l~~~D~~~~p 52 (342)
T cd06329 1 KIGVIDPLSGPFASLGELVRRGLQLAADEINAKGGVDGRPIELVEEDNKGSP 52 (342)
T ss_pred CeeeeccCCCCcccccHHHHHHHHHHHHHHHhcCCcCCeEEEEEeccCCCCh
Confidence 489999886 4689999999999999999877666789999999998863
No 35
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=96.58 E-value=0.0073 Score=47.00 Aligned_cols=52 Identities=17% Similarity=0.265 Sum_probs=45.5
Q ss_pred ceEEEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCCC
Q 034542 41 DEVHVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGIG 92 (92)
Q Consensus 41 ~~V~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~g 92 (92)
..|+||++..++ ...|+..+.+.++|++|+|+.-...+.++++.+.|..+|+
T Consensus 9 ~~IkIGv~~plsG~~A~~G~~~~~ga~lAv~~iNa~Ggi~G~~velv~~D~~~dp 63 (366)
T COG0683 9 DTIKIGVVLPLSGPAAAYGQQIKNGAELAVEEINAAGGILGRKVELVVEDDASDP 63 (366)
T ss_pred CceEEEEEecCCchhhhhChHHHHHHHHHHHHHhhhCCcCCceEEEEEecCCCCh
Confidence 379999999984 5789999999999999999988877656999999988763
No 36
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=96.57 E-value=0.0033 Score=48.56 Aligned_cols=49 Identities=12% Similarity=0.015 Sum_probs=42.8
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCCC
Q 034542 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGIG 92 (92)
Q Consensus 44 ~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~g 92 (92)
+||++.+++ +..|+..+.++++|++++|+.-...+.+|+|.++|+++++
T Consensus 1 kIG~~~plsG~~a~~G~~~~~g~~la~~~iNa~GGI~Gr~ielv~~D~~~~p 52 (351)
T cd06334 1 KVGLLADRTGPTAFVGIPYAAGFADYFKYINEDGGINGVKLEWEECDTGYEV 52 (351)
T ss_pred CCCccccCCCcccccChhHHHHHHHHHHHHHHcCCcCCeEEEEEEecCCCCc
Confidence 488899887 6889999999999999999886666789999999998864
No 37
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=96.53 E-value=0.0065 Score=44.92 Aligned_cols=49 Identities=10% Similarity=0.012 Sum_probs=41.4
Q ss_pred EEEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 43 VHVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 43 V~IGaIlDl~S---~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
|+||++.+++- ..|+..+-++++|++++|+.....+-++.|..+|++++
T Consensus 1 i~IG~~~~lsG~~a~~g~~~~~~~~~a~~~iN~~ggi~G~~v~l~~~D~~~d 52 (336)
T cd06326 1 IVLGQSAPLSGPAAALGRAYRAGAQAYFDAVNAAGGVNGRKIELVTLDDGYE 52 (336)
T ss_pred CEEEEeccCCCcchhhHHHHHHHHHHHHHHHHhcCCcCCceEEEEEeCCCCC
Confidence 58999999874 56888999999999999987655557899999998765
No 38
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=96.53 E-value=0.0056 Score=46.47 Aligned_cols=49 Identities=27% Similarity=0.272 Sum_probs=42.6
Q ss_pred EEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCCC
Q 034542 44 HVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGIG 92 (92)
Q Consensus 44 ~IGaIlDl~S---~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~g 92 (92)
+||++++++- ..|+..+.++++|++++|....+.+.++++.++|..+++
T Consensus 1 ~IG~~~plsG~~a~~g~~~~~g~~la~~~iN~~gGi~G~~i~lv~~D~~~~p 52 (347)
T cd06335 1 KIGVDADFSGGSAPSGVSIRRGARLAIDEINAAGGVLGRKLELVERDDRGNP 52 (347)
T ss_pred CeeeecCccCccccccHHHHHHHHHHHHHHHhcCCcCCeEEEEEeccCCCCc
Confidence 5899998875 789999999999999999887666789999999998763
No 39
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=96.51 E-value=0.0053 Score=46.59 Aligned_cols=48 Identities=25% Similarity=0.313 Sum_probs=40.7
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCC---CceeEEEEEeecCCCC
Q 034542 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNT---HYKTRLVLHSRDSQGI 91 (92)
Q Consensus 44 ~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~---~~~TrL~L~~rDS~~~ 91 (92)
+||++.+++ +..|.....++++|++++|+... ..+.+|++.++|+.++
T Consensus 1 ~IG~~~p~sG~~a~~g~~~~~g~~lA~~~iN~~GGi~~i~G~~v~lv~~D~~~~ 54 (347)
T cd06340 1 KIGVLLPLSGGLAAIGQQCKAGAELAVEEINAAGGIKSLGGAKLELVFGDSQGN 54 (347)
T ss_pred CceeEecCCchhhhhCHHHHHHHHHHHHHHHhcCCccCCCCceEEEEEecCCCC
Confidence 489999997 47889999999999999998663 2358999999999876
No 40
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=96.46 E-value=0.0081 Score=45.43 Aligned_cols=49 Identities=14% Similarity=0.143 Sum_probs=40.8
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCC-CceeEEEEEeecCCCCC
Q 034542 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNT-HYKTRLVLHSRDSQGIG 92 (92)
Q Consensus 44 ~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~-~~~TrL~L~~rDS~~~g 92 (92)
+||++.+++ +..|+..+.++++|++++|+.+. ..+.+++|..+|+++++
T Consensus 1 ~IG~~~~lsG~~a~~G~~~~~g~~lav~~inn~~ggi~G~~i~lv~~D~~~~p 53 (333)
T cd06328 1 KIGLITDLSGPLAAYGKQTLTGFMLGLEYATGGTMQVDGRPIEVIVKDDAGNP 53 (333)
T ss_pred CeEEEEecCCchhhhhHHHHHHHHHHHHHHHhcCCCcCCEEEEEEEecCCCCh
Confidence 589999998 57899999999999999965443 33589999999999874
No 41
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=96.39 E-value=0.0051 Score=46.09 Aligned_cols=47 Identities=28% Similarity=0.319 Sum_probs=39.1
Q ss_pred EEEEEEecCC----cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCCC
Q 034542 44 HVGVILDMRS----WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGIG 92 (92)
Q Consensus 44 ~IGaIlDl~S----~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~g 92 (92)
+||++++++. ..|+....++++|++++| ....+.+++|.++|+.+++
T Consensus 1 ~IG~l~plsG~~~a~~g~~~~~g~~la~~~iN--ggi~G~~v~l~~~D~~~~p 51 (334)
T cd06327 1 KIGVLTDMSGVYADAEGKGSVEAAELAVEDFG--GGVLGRPIELVVADHQNKA 51 (334)
T ss_pred CcccccCCCCcCccccCHHHHHHHHHHHHHhc--CCccCeEEEEEEecCCCCc
Confidence 4788888874 458999999999999999 4455689999999998863
No 42
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=96.39 E-value=0.0095 Score=47.77 Aligned_cols=52 Identities=13% Similarity=0.083 Sum_probs=42.5
Q ss_pred cceEEEEEEEecCC-----------------cchHHHHHHHHHHHHHHhccCCCce-eEEEEEeecCCCC
Q 034542 40 ADEVHVGVILDMRS-----------------WSGKISNSCISMAIADFYALNTHYK-TRLVLHSRDSQGI 91 (92)
Q Consensus 40 ~~~V~IGaIlDl~S-----------------~iGK~a~~aIemAveDfna~~~~~~-TrL~L~~rDS~~~ 91 (92)
++.+-||.+|..-+ ..|-....||.+|+|++|+++..+. .+|.+.++|+.++
T Consensus 7 ~Gd~~igglfpvh~~~~~~~~~~~~c~~~~~~~g~~~~~Am~~Aie~IN~~~~lLp~~~Lg~~i~Dtc~~ 76 (472)
T cd06374 7 DGDIIIGALFSVHHQPAAEKVPERKCGEIREQYGIQRVEAMFHTLDRINADPVLLPNITLGCEIRDSCWH 76 (472)
T ss_pred cCCEEEEEEEecccccccCCCCCCCccccCcchhHHHHHHHHHHHHHHhCCcccCCCceeccEEEEcCCC
Confidence 45667777776553 4677888999999999999988886 9999999999875
No 43
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=96.38 E-value=0.0092 Score=44.59 Aligned_cols=48 Identities=15% Similarity=-0.036 Sum_probs=41.4
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 44 ~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
+||+++++. +..|+....++++|++++|+.....+.+++|.++|++++
T Consensus 1 ~IGv~~p~sG~~a~~g~~~~~g~~~a~~~~N~~Ggi~G~~i~lv~~D~~~~ 51 (341)
T cd06341 1 KIGLLYPDTGVAAVSFPGARAGADAAAGYANAAGGIAGRPIEYVWCDDQGD 51 (341)
T ss_pred CeEEEecCCCchhhccHHHHHHHHHHHHHHHhcCCcCCceEEEEEecCCCC
Confidence 589999875 589999999999999999987665567899999999876
No 44
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=96.30 E-value=0.0062 Score=46.20 Aligned_cols=49 Identities=12% Similarity=0.014 Sum_probs=40.6
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCc--e--eEEEEEeecCCCCC
Q 034542 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHY--K--TRLVLHSRDSQGIG 92 (92)
Q Consensus 44 ~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~~~--~--TrL~L~~rDS~~~g 92 (92)
+||++.+++ +..|+..+.++++|++++|+..... + .++++.++|+++++
T Consensus 1 ~IG~l~plsG~~a~~g~~~~~g~~lA~~~iN~~GGi~~~G~~~~iel~~~D~~~~p 56 (347)
T cd06336 1 KIGFSGPLSGPAAAWGLPGLRGVQLAAEEINAAGGIKVGGKKYKVEIVSYDDKYDP 56 (347)
T ss_pred CcceeccCcCcccccChhhHHHHHHHHHHHHhcCCcccCCceeeEEEEEecCCCCH
Confidence 489999887 4578999999999999999876544 2 48999999998863
No 45
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=96.12 E-value=0.016 Score=43.18 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=38.4
Q ss_pred EEEEEecCC-------------cchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCCC
Q 034542 45 VGVILDMRS-------------WSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQGIG 92 (92)
Q Consensus 45 IGaIlDl~S-------------~iGK~a~~aIemAveDfna~~~~~-~TrL~L~~rDS~~~g 92 (92)
||++|++.+ ..|.....++.+|+++.|++...+ +.+|.+.++|+.|++
T Consensus 2 ig~lf~~~~~~~~~~~~c~~~~~~~~~~~~~~~~Av~~iN~~~~~l~g~~l~l~~~D~~~~~ 63 (348)
T cd06350 2 IGGLFPLHSGSESVSLKCGRFGKKGLQAAEAMLFAVEEINNDPDLLPNITLGYHIYDSCCSP 63 (348)
T ss_pred eEEEEeCcccccCCCcccceechHHHHHHHHHHHHHHHHcCCCccCCCCceeEEEEecCCcc
Confidence 677777766 457777788999999999876555 489999999999863
No 46
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=96.11 E-value=0.015 Score=45.75 Aligned_cols=38 Identities=16% Similarity=0.031 Sum_probs=33.6
Q ss_pred cchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCC
Q 034542 54 WSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQGI 91 (92)
Q Consensus 54 ~iGK~a~~aIemAveDfna~~~~~-~TrL~L~~rDS~~~ 91 (92)
..|...+.||++|+|++|++...+ +.+|.+.++|+.++
T Consensus 27 ~~G~~~~~a~~~Aie~IN~~~~iLpg~~L~~~i~D~~~~ 65 (452)
T cd06362 27 QRGIQRLEAMLFALDEINNDPTLLPGITLGAHILDTCSR 65 (452)
T ss_pred cchHHHHHHHHHHHHHhhCCCCCCCCCeeCcEEEEeCCC
Confidence 578888999999999999988776 58999999999775
No 47
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=96.09 E-value=0.02 Score=47.09 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=44.9
Q ss_pred CCcceEEEEEEEecCC----------------------cchHHHHHHHHHHHHHHhccCCCce-eEEEEEeecCCCC
Q 034542 38 FTADEVHVGVILDMRS----------------------WSGKISNSCISMAIADFYALNTHYK-TRLVLHSRDSQGI 91 (92)
Q Consensus 38 ~~~~~V~IGaIlDl~S----------------------~iGK~a~~aIemAveDfna~~~~~~-TrL~L~~rDS~~~ 91 (92)
..++.+-||.+|..-+ ..|.....||.+|++++|++...++ .+|.+.++|+.++
T Consensus 8 ~~~Gd~~igglFpvh~~~~~~~~~~~~~~~~~~c~~~~~~g~~~~~am~~AieeIN~~~~lLp~i~Lg~~i~Dtc~~ 84 (510)
T cd06364 8 QKKGDIILGGLFPIHFGVAAKDQDLKSRPESVECIRYNFRGFRWLQAMIFAIEEINNSPTLLPNITLGYRIFDTCNT 84 (510)
T ss_pred eecCCEEEEEEEECcccccccccccccCCCCCcccccChhhHHHHHHHHHHHHHHhCCCccCCCCEEeEEEEccCCc
Confidence 3466788888888764 5688889999999999999887775 7999999999665
No 48
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G. This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.
Probab=95.93 E-value=0.018 Score=44.44 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=35.7
Q ss_pred EEEEE--ecCCc-chHHHHHHHHHHHHHHhccCCCce-eEEEEEeecCCCCC
Q 034542 45 VGVIL--DMRSW-SGKISNSCISMAIADFYALNTHYK-TRLVLHSRDSQGIG 92 (92)
Q Consensus 45 IGaIl--Dl~S~-iGK~a~~aIemAveDfna~~~~~~-TrL~L~~rDS~~~g 92 (92)
||+.. +.+.. -|.....|+++|++++|++...++ .+|.+.++|+.|+.
T Consensus 2 vg~~~p~~~~~~~~~~~~~~a~~lAi~~IN~~~~~l~~~~l~~~~~D~~~~~ 53 (391)
T cd06372 2 VGFQAPWNISHPFSAQRLGAALQIAMDKVNSDPVYLGNYSMEFTYTNSTCSA 53 (391)
T ss_pred ceeeccccccCchhhhhHHHHHHHHHHHHhcCCCCCCCceEEEEEecCCCCc
Confidence 55555 33333 344555899999999999876665 89999999999863
No 49
>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current.
Probab=95.92 E-value=0.012 Score=46.48 Aligned_cols=35 Identities=14% Similarity=0.042 Sum_probs=30.4
Q ss_pred cCCcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecC
Q 034542 51 MRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDS 88 (92)
Q Consensus 51 l~S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS 88 (92)
.+...|+++++|+++|++|||.+. +++|.++++++
T Consensus 6 ~~~~~~~~~~~A~~~Av~~~N~~~---~~~l~~~~~~~ 40 (368)
T cd06383 6 MTEDDNDVYKQIIDDALSYINRNI---GTGLSVVHQQV 40 (368)
T ss_pred ecccchHHHHHHHHHHHHHHhcCC---CCceEEEEecc
Confidence 344589999999999999999876 48999999998
No 50
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=95.90 E-value=0.026 Score=44.18 Aligned_cols=36 Identities=14% Similarity=0.052 Sum_probs=32.2
Q ss_pred cchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCC
Q 034542 54 WSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQ 89 (92)
Q Consensus 54 ~iGK~a~~aIemAveDfna~~~~~-~TrL~L~~rDS~ 89 (92)
..|...+.|+++|++++|++...+ +.+|.+.++|+.
T Consensus 39 ~~g~~~~~a~~lAv~~IN~~ggil~g~~l~~~~~D~~ 75 (410)
T cd06363 39 LSGYRLFQAMRFAVEEINNSTSLLPGVTLGYEIFDHC 75 (410)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCCCCeeceEEEecC
Confidence 578889999999999999988877 689999999973
No 51
>KOG1055 consensus GABA-B ion channel receptor subunit GABABR1 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=95.90 E-value=0.023 Score=51.09 Aligned_cols=51 Identities=18% Similarity=0.087 Sum_probs=41.8
Q ss_pred eEEEEEEEec-----CCcchHHHHHHHHHHHHHHhccCCCce-eEEEEEeecCCCCC
Q 034542 42 EVHVGVILDM-----RSWSGKISNSCISMAIADFYALNTHYK-TRLVLHSRDSQGIG 92 (92)
Q Consensus 42 ~V~IGaIlDl-----~S~iGK~a~~aIemAveDfna~~~~~~-TrL~L~~rDS~~~g 92 (92)
+..++.++-+ +...|+..+.|++||++|+|+.+..+. =+|.++..||+|+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~g~~~~Pav~~Al~~vn~~~~ilp~y~L~~~~~ds~C~~ 97 (865)
T KOG1055|consen 41 PRRIVGIGPLGPGSGGWPGGQACLPAVELALEDVNSRSDILPGYRLKLIHHDSECDP 97 (865)
T ss_pred CceeeeeecCccccCCCcCcccccHHHHHHHHHhhccccccCCcEEEEEeccccCCc
Confidence 3555555544 467899999999999999999887775 89999999999973
No 52
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=95.82 E-value=0.025 Score=45.17 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=40.1
Q ss_pred eEEEEEEEecCC-------------cchHHHHHHHHHHHHHHhccCCCce-eEEEEEeecCCCC
Q 034542 42 EVHVGVILDMRS-------------WSGKISNSCISMAIADFYALNTHYK-TRLVLHSRDSQGI 91 (92)
Q Consensus 42 ~V~IGaIlDl~S-------------~iGK~a~~aIemAveDfna~~~~~~-TrL~L~~rDS~~~ 91 (92)
.+.||.+|.... ..|.....||.+|++++|++...++ .+|.+.++|+.++
T Consensus 2 di~igglfp~h~~~~~~~~c~~~~~~~g~~~~~a~~~Aie~IN~~~~iLpg~~L~~~i~D~~~~ 65 (463)
T cd06376 2 DITLGGLFPVHARGPAGVPCGDIKKENGIHRLEAMLYALDQINSDPDLLPNVTLGARILDTCSR 65 (463)
T ss_pred CeEEEEEEeeeeCCCCCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCCceEccEEEeccCC
Confidence 366777776551 3677789999999999999887774 8999999998654
No 53
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=95.58 E-value=0.023 Score=44.38 Aligned_cols=48 Identities=10% Similarity=0.007 Sum_probs=38.4
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCC
Q 034542 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQGI 91 (92)
Q Consensus 44 ~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~~~-~TrL~L~~rDS~~~ 91 (92)
+||++..++ .-.|...+.++++|++++|++...+ +.++.+.+.|++|+
T Consensus 1 ~ig~~~p~sg~~~~~g~~~~~a~~lAie~iN~~g~il~g~~l~~~~~d~~~~ 52 (382)
T cd06371 1 KVGVLGPWSCDPIFSKALPDVAARLAVSRINRDPSLSLGYWFDYVLLPEPCE 52 (382)
T ss_pred CceEecCcccCchhhhhhHHHHHHHHHHHHhCCCCCCCCceEEEEEecCCCC
Confidence 366666542 3557788999999999999988763 58999999999986
No 54
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=95.55 E-value=0.036 Score=44.79 Aligned_cols=38 Identities=11% Similarity=-0.029 Sum_probs=33.7
Q ss_pred cchHHHHHHHHHHHHHHhccCCCce-eEEEEEeecCCCC
Q 034542 54 WSGKISNSCISMAIADFYALNTHYK-TRLVLHSRDSQGI 91 (92)
Q Consensus 54 ~iGK~a~~aIemAveDfna~~~~~~-TrL~L~~rDS~~~ 91 (92)
..|-....||.+|++++|+++..+. .+|..+++|+.|+
T Consensus 36 ~~~~~~~~Am~~Ai~~IN~~~~lLp~~~Lg~~i~dtc~~ 74 (469)
T cd06365 36 LKNYQHVLALLFAIEEINKNPHLLPNISLGFHIYNVLHS 74 (469)
T ss_pred chhhHHHHHHHHHHHHHhCCCCCCCCceEEEEEECCCCc
Confidence 5778888899999999999887775 9999999999886
No 55
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=95.51 E-value=0.017 Score=43.98 Aligned_cols=46 Identities=20% Similarity=0.166 Sum_probs=38.0
Q ss_pred eEEEEEEEecCCcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 42 EVHVGVILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 42 ~V~IGaIlDl~S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
.++||+|+|.++.. +..+.|+.+|..|++ .+ ++.++.+.+.|+++|
T Consensus 2 ~~~ig~~~~~~~~~-~~~~~a~~~~~~~~~-~~--~~~~~~l~~~d~~~d 47 (362)
T cd06367 2 TVNIGVVLSGSSSE-PAFRDAVTAANFRHN-LP--YNLSLEAVAVSNDTD 47 (362)
T ss_pred ceEEEEEecCCcch-hhHHHHhhhcccccc-CC--cccceEEEEEecCCC
Confidence 58999999999766 888888888888888 22 457899999988876
No 56
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=95.44 E-value=0.04 Score=43.82 Aligned_cols=38 Identities=13% Similarity=-0.028 Sum_probs=32.4
Q ss_pred cchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCCC
Q 034542 54 WSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQGIG 92 (92)
Q Consensus 54 ~iGK~a~~aIemAveDfna~~~~~-~TrL~L~~rDS~~~g 92 (92)
..|=....||++|+|++|++. .+ +.+|.+.++|+.++.
T Consensus 32 ~~g~~~~~am~~AieeIN~~~-~Lpg~~L~~~i~Dt~~~~ 70 (403)
T cd06361 32 IKGFLQTLAMIHAIEMINNST-LLLGVTLGYEIYDTCSEV 70 (403)
T ss_pred hhHHHHHHHHHHHHHHHhCCC-CCCCCEEceEEEeCCCCh
Confidence 478888889999999999887 44 589999999998863
No 57
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=95.20 E-value=0.053 Score=43.82 Aligned_cols=38 Identities=16% Similarity=0.018 Sum_probs=33.6
Q ss_pred cchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCC
Q 034542 54 WSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQGI 91 (92)
Q Consensus 54 ~iGK~a~~aIemAveDfna~~~~~-~TrL~L~~rDS~~~ 91 (92)
..|-....||.+|++++|+++..+ +.+|.++++|+.++
T Consensus 27 ~~g~~~~~Am~~AIe~IN~~~~lLp~~~Lg~~i~Dtc~~ 65 (458)
T cd06375 27 DRGIQRLEAMLFAIDRINNDPRILPGIKLGVHILDTCSR 65 (458)
T ss_pred cchHHHHHHHHHHHHHHhCCCCCCCCceeccEEEecCCC
Confidence 568889999999999999988776 49999999999775
No 58
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=95.15 E-value=0.047 Score=42.17 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=38.1
Q ss_pred EEEEEEecC----CcchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCC
Q 034542 44 HVGVILDMR----SWSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQG 90 (92)
Q Consensus 44 ~IGaIlDl~----S~iGK~a~~aIemAveDfna~~~~~-~TrL~L~~rDS~~ 90 (92)
+||+++=.+ +..|+..+.|+++|++++|++...+ +.+|.+.++|+.+
T Consensus 1 ~~g~l~p~~~~~~~~~~~~~~~a~~lAve~IN~~gg~l~G~~l~~~~~D~~~ 52 (396)
T cd06373 1 TLAVLLPKNNTSYPWSLPRVGPAIDIAVERVNADPGLLPGHNITLVFEDSEC 52 (396)
T ss_pred CeEEEcCCCCCCcccchhhhhhHHHHHHHHHhcCCCcCCCeEEEEEEecCcc
Confidence 478887433 4577888999999999999877554 5889999999987
No 59
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=95.01 E-value=0.05 Score=39.61 Aligned_cols=43 Identities=19% Similarity=0.280 Sum_probs=34.5
Q ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCC
Q 034542 44 HVGVILDMRSWSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQ 89 (92)
Q Consensus 44 ~IGaIlDl~S~iGK~a~~aIemAveDfna~~~~~-~TrL~L~~rDS~ 89 (92)
+||+|+|.++ +....|+++|++++|.....+ ++++.+++.+..
T Consensus 1 ~iG~i~~~~~---~~~~~a~~~Ai~~iN~~~~~~~~~~l~~~~~~~~ 44 (328)
T cd06351 1 NIGAIFDRDA---RKEELAFRAAIDALNTENLNALPTKLSVEVVEVN 44 (328)
T ss_pred CeeeecCCCc---HHHHHHHHHHHHHhccCccccCCeeEEEEEEEeC
Confidence 5899999988 999999999999999887654 356666665543
No 60
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=94.83 E-value=0.078 Score=39.79 Aligned_cols=46 Identities=11% Similarity=0.060 Sum_probs=37.4
Q ss_pred EEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 44 HVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 44 ~IGaIlDl~S---~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
+||+++.++. ..|+..+.++++|++++|. ...+.+++|.++|++++
T Consensus 1 ~IG~~~plsG~~a~~g~~~~~g~~lAv~~ing--gi~G~~i~l~~~D~~~~ 49 (333)
T cd06359 1 KIGFITTLSGPAAALGQDMRDGFQLALKQLGG--KLGGLPVEVVVEDDGLK 49 (333)
T ss_pred CeEEEEecccchhhhhHHHHHHHHHHHHHhCC--ccCCEEEEEEecCCCCC
Confidence 4899998874 5688899999999999973 23357899999999876
No 61
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=94.53 E-value=0.056 Score=41.23 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=35.2
Q ss_pred EEEEEEecCCc---chHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCC
Q 034542 44 HVGVILDMRSW---SGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQG 90 (92)
Q Consensus 44 ~IGaIlDl~S~---iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~ 90 (92)
+||+++.++.. .|+..+.++++|++++| +.+++|.++|+.+
T Consensus 1 kIG~l~plsG~~a~~g~~~~~g~~lA~~~in------G~~i~l~~~D~~~ 44 (336)
T cd06339 1 RIALLLPLSGPLASVGQAIRNGFLAALYDLN------GASIELRVYDTAG 44 (336)
T ss_pred CeEEEEcCCCcchHHHHHHHHHHHHHHHhcc------CCCceEEEEeCCC
Confidence 48999998775 79999999999999999 3578888899875
No 62
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=94.43 E-value=0.072 Score=41.59 Aligned_cols=37 Identities=22% Similarity=0.117 Sum_probs=31.4
Q ss_pred chHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCC
Q 034542 55 SGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQGI 91 (92)
Q Consensus 55 iGK~a~~aIemAveDfna~~~~~-~TrL~L~~rDS~~~ 91 (92)
.+...+.|+++|++|+|++...+ +.+|.++++|++|+
T Consensus 15 ~~~~~~~a~~lAie~IN~~~~ll~g~~l~~~~~d~~~~ 52 (387)
T cd06386 15 SSARVAPAIEYAQRRLEANRLLFPGFRFNVHYEDSDCG 52 (387)
T ss_pred ehhhhHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCcCC
Confidence 44667899999999999977654 58999999999996
No 63
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=94.12 E-value=0.13 Score=36.09 Aligned_cols=48 Identities=19% Similarity=0.110 Sum_probs=34.9
Q ss_pred EEEEEEecCC--cchHHHHHHHHHHHHHHhccCC-CceeEEEEEeecCCCC
Q 034542 44 HVGVILDMRS--WSGKISNSCISMAIADFYALNT-HYKTRLVLHSRDSQGI 91 (92)
Q Consensus 44 ~IGaIlDl~S--~iGK~a~~aIemAveDfna~~~-~~~TrL~L~~rDS~~~ 91 (92)
+||++++..+ ..+.....++.++..+++..+. ..+.+|.+.++|+.++
T Consensus 1 ~iG~~f~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~l~~~~~d~~~~ 51 (298)
T cd06269 1 RIGGLFPLHSGGRFGEEGAFRAAAALFAVEEINNDLPNTTLGYEIYDSCCS 51 (298)
T ss_pred CEEEEeecccccccCHHHHHHHHHHHHHHHHHhccCCCCeeeeEEEecCCC
Confidence 4899999998 5666666666666666654432 2248999999999875
No 64
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=93.43 E-value=0.17 Score=41.52 Aligned_cols=49 Identities=16% Similarity=0.114 Sum_probs=34.4
Q ss_pred EEEEEEEecCCc---chHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 43 VHVGVILDMRSW---SGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 43 V~IGaIlDl~S~---iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
++||+++.++.+ .++..+-+..||++++|++...++-+|+..+.|..+|
T Consensus 1 ikVGiL~S~tG~~a~~e~~~~~~~~lAI~eINa~GGvlG~~le~v~~Dp~Sd 52 (363)
T PF13433_consen 1 IKVGILHSLTGTMAISERSLLDGALLAIEEINAAGGVLGRQLEPVIYDPASD 52 (363)
T ss_dssp --EEEE--SSSTTHHHHHHHHHHHHHHHHHHHCTTTBTTB--EEEEE--TT-
T ss_pred CeEEEEEeCCCchHhhhHHHHHHHHHHHHHHHhcCCcCCeEEEEEEECCCCC
Confidence 589999999865 4566677889999999999888889999999998775
No 65
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=93.19 E-value=0.27 Score=36.11 Aligned_cols=46 Identities=9% Similarity=0.063 Sum_probs=37.0
Q ss_pred EEEEEEecCCc---chHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 44 HVGVILDMRSW---SGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 44 ~IGaIlDl~S~---iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
+||+++.++.+ .|+....++++|++++|.- ..+.++.|.+.|++++
T Consensus 1 ~IG~~~~~sg~~~~~g~~~~~g~~~a~~~~~~~--i~G~~i~l~~~d~~~~ 49 (333)
T cd06332 1 KIGLLTTLSGPYAALGQDIRDGFELALKQLGGK--LGGRPVEVVVEDDELK 49 (333)
T ss_pred CeEEEeeccCchHhhhHHHHHHHHHHHHHhCCC--cCCeEEEEEEecCCCC
Confidence 48999999855 6778999999999999732 2247899999998875
No 66
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=92.57 E-value=0.39 Score=35.47 Aligned_cols=46 Identities=13% Similarity=0.110 Sum_probs=36.5
Q ss_pred EEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 44 HVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 44 ~IGaIlDl~S---~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
+||+++.++. ..|.....++++|+++.+.- .-+.+++|.++|++++
T Consensus 1 ~IG~l~p~sG~~a~~g~~~~~g~~~a~~~~~~~--i~G~~i~l~~~D~~~~ 49 (336)
T cd06360 1 KVGLLLPYSGTYAALGEDITRGFELALQEAGGK--LGGREVEFVVEDDEAK 49 (336)
T ss_pred CeEEEEecccchHhhcHhHHHHHHHHHHHhCCC--cCCEEEEEEEcCCCCC
Confidence 4899999875 45588899999999998532 2247999999999876
No 67
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=92.45 E-value=0.32 Score=37.90 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCC
Q 034542 58 ISNSCISMAIADFYALNTHY-KTRLVLHSRDSQGI 91 (92)
Q Consensus 58 ~a~~aIemAveDfna~~~~~-~TrL~L~~rDS~~~ 91 (92)
....|+++|+|++|+....+ +.+|.+.++|++++
T Consensus 19 ~~~~a~~lAieeiN~~g~il~g~~l~~~~~D~~~~ 53 (399)
T cd06384 19 RVGPAIRMAVERIQNKGKLLRGYTITLLNKSSELN 53 (399)
T ss_pred hhHHHHHHHHHHHhccCCcCCCceEEEEEeccCCc
Confidence 34479999999999987553 57999999998664
No 68
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=90.68 E-value=0.95 Score=34.81 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=20.7
Q ss_pred cceEEEEEEEecCCcchHHHHHHHHHHHHHHhcc
Q 034542 40 ADEVHVGVILDMRSWSGKISNSCISMAIADFYAL 73 (92)
Q Consensus 40 ~~~V~IGaIlDl~S~iGK~a~~aIemAveDfna~ 73 (92)
+..|+||+|++ ++ ....+.++|+++.|++
T Consensus 17 ~~~i~IG~i~~-~~----~~~~~~~~Ai~~~N~~ 45 (377)
T cd06379 17 PKTVNIGAVLS-NK----KHEQEFKEAVNAANVE 45 (377)
T ss_pred CcEEEEeEEec-ch----hHHHHHHHHHHHHhhh
Confidence 67899999997 33 4456666777777763
No 69
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=90.48 E-value=0.43 Score=36.50 Aligned_cols=49 Identities=12% Similarity=0.004 Sum_probs=38.0
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCc--eeEEEEEeecCCCCC
Q 034542 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHY--KTRLVLHSRDSQGIG 92 (92)
Q Consensus 44 ~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~~~--~TrL~L~~rDS~~~g 92 (92)
+||++.+++ ...|...+.+.++|++++|.--..- +.+++|..+|+++++
T Consensus 1 kIG~~~~lSG~~a~~G~~~~~~~~~~~~~in~g~~i~G~~~~i~lv~~D~~~~p 54 (357)
T cd06337 1 KIGYVSPRTGPLAAFGEADPWVLETMRSALADGLVVGGSTYEVEIIVRDSQSNP 54 (357)
T ss_pred CcceeccCcCcccccccchHHHHHHHHHHhcCCeeECCceeEEEEEEecCCCCH
Confidence 489999997 5779888899999999998432111 247999999998763
No 70
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=89.44 E-value=0.52 Score=37.24 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=28.3
Q ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHhccCCC-ceeE-EEEEeecCCCC
Q 034542 44 HVGVILDMRSWSGKISNSCISMAIADFYALNTH-YKTR-LVLHSRDSQGI 91 (92)
Q Consensus 44 ~IGaIlDl~S~iGK~a~~aIemAveDfna~~~~-~~Tr-L~L~~rDS~~~ 91 (92)
+||+|||.++..+++ |..+|+.+.|.+... .+.+ +.+...|..+|
T Consensus 1 ~IG~if~~~~~~~~~---af~~ala~~~iN~~gg~~~~~i~~v~~dd~~d 47 (363)
T cd06381 1 HIGAIFSESALEDDE---VFAVAVIDLNINEQILQTEKITLSISFIDLNN 47 (363)
T ss_pred CeeeeccCCcchHHH---HHHHHHHHhhccccccCCccceeeeEeecCCC
Confidence 599999999876544 666666666544322 2234 55555776665
No 71
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=85.64 E-value=1.5 Score=32.01 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhccCCCc-eeEEEEEeecCC
Q 034542 59 SNSCISMAIADFYALNTHY-KTRLVLHSRDSQ 89 (92)
Q Consensus 59 a~~aIemAveDfna~~~~~-~TrL~L~~rDS~ 89 (92)
.+.|+++|++++|+++..+ +.+|.+++.|++
T Consensus 2 ~~~a~~~Ai~~iN~~~~~~~~~~l~~~~~d~~ 33 (348)
T PF01094_consen 2 VLAAVQLAIDEINNNPDLLPNITLEVQVFDTC 33 (348)
T ss_dssp HHHHHHHHHHHHHHSSTSSTTSEEEEEEEEET
T ss_pred HHHHHHHHHHHHHcCCCCCCCeEEEEEEEeec
Confidence 4678999999999987734 488999998886
No 72
>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=80.34 E-value=4.7 Score=33.07 Aligned_cols=44 Identities=14% Similarity=0.073 Sum_probs=34.1
Q ss_pred ceEEEEEEEecCCcchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecC
Q 034542 41 DEVHVGVILDMRSWSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDS 88 (92)
Q Consensus 41 ~~V~IGaIlDl~S~iGK~a~~aIemAveDfna~~~~~-~TrL~L~~rDS 88 (92)
..++||+|||-. ..+..|...|++=+|.+.... +++|+.++..-
T Consensus 17 ~~i~iG~if~~~----~~~~~af~~Av~~~N~~~~l~~~~~L~~~~~~~ 61 (382)
T cd06377 17 HTVRLGALLVRA----PAPRDRVLAALARANRAPLLPYNLSLEVVAAAA 61 (382)
T ss_pred CceeeeEEecCC----chHHHHHHHHHHHhccccccccCceeEEeEEEc
Confidence 369999999966 457999999999999876433 37887777654
No 73
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=76.68 E-value=4.7 Score=32.24 Aligned_cols=40 Identities=13% Similarity=0.158 Sum_probs=29.8
Q ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHhccCCCce--eEEEEEee
Q 034542 44 HVGVILDMRSWSGKISNSCISMAIADFYALNTHYK--TRLVLHSR 86 (92)
Q Consensus 44 ~IGaIlDl~S~iGK~a~~aIemAveDfna~~~~~~--TrL~L~~r 86 (92)
+||+|||-++ .....|...|++.+|.+...+. ++|+-++.
T Consensus 1 ~iG~iF~~~~---~~~~~aF~~Av~~~N~~~~~~~~~~~l~~~i~ 42 (372)
T cd06387 1 SIGGLFMRNT---VQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVD 42 (372)
T ss_pred CcceeecCCc---HHHHHHHHHHHHHhcccccccccCeEEEEeeE
Confidence 5899999655 3467899999999998764443 57776554
No 74
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=73.26 E-value=5.7 Score=31.34 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=29.0
Q ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHhccCCCc--eeEEEEEee
Q 034542 44 HVGVILDMRSWSGKISNSCISMAIADFYALNTHY--KTRLVLHSR 86 (92)
Q Consensus 44 ~IGaIlDl~S~iGK~a~~aIemAveDfna~~~~~--~TrL~L~~r 86 (92)
+||+|||-++ ..+..|.+.|++.+|.+.... .++|+-+++
T Consensus 1 ~iG~if~~~~---~~~~~af~~a~~~~n~~~~~~~~~~~l~~~~~ 42 (371)
T cd06388 1 QIGGLFIRNT---DQEYTAFRLAIFLHNTSPNASEAPFNLVPHVD 42 (371)
T ss_pred CCceeecCCc---hHHHHHHHHHHHHhhccccccccceEEeeeee
Confidence 5899999665 346799999999999765332 267766554
No 75
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.
Probab=72.66 E-value=6.2 Score=31.04 Aligned_cols=36 Identities=11% Similarity=-0.008 Sum_probs=29.4
Q ss_pred CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecC
Q 034542 53 SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDS 88 (92)
Q Consensus 53 S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS 88 (92)
+.-+...+.+++||++|+|+.-..++-+++|...|.
T Consensus 7 ~~~~~~~~~ga~lAveeiNaaGGv~G~~ielv~~D~ 42 (347)
T TIGR03863 7 PPPEDRGLDGARLAIEDNNTTGRFLGQTFTLDEVAV 42 (347)
T ss_pred CCCcchHHHHHHHHHHHHHhhCCcCCceEEEEEccC
Confidence 445667788999999999987777777888888875
No 76
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=70.45 E-value=11 Score=25.19 Aligned_cols=41 Identities=24% Similarity=0.237 Sum_probs=29.7
Q ss_pred EEEEEEecC--CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 44 HVGVILDMR--SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 44 ~IGaIlDl~--S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
+||+|+... +..+.....+++.|+++. . ..+.+.+.|+.++
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~~~~~~~~~~-----g--~~~~~~~~~~~~~ 43 (269)
T cd01391 1 KIGVLLPLSGSAPFGAQLLAGIELAAEEI-----G--RGLEVILADSQSD 43 (269)
T ss_pred CceEEeecCCCcHHHHHHHHHHHHHHHHh-----C--CceEEEEecCCCC
Confidence 489999776 778888888999999987 1 2445556666554
No 77
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=64.07 E-value=7.9 Score=30.57 Aligned_cols=28 Identities=7% Similarity=0.227 Sum_probs=23.3
Q ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHhccC
Q 034542 44 HVGVILDMRSWSGKISNSCISMAIADFYALN 74 (92)
Q Consensus 44 ~IGaIlDl~S~iGK~a~~aIemAveDfna~~ 74 (92)
+||+||+-++ .....|...|++.+|.+.
T Consensus 1 ~iG~if~~~~---~~~~~af~~av~~~N~~~ 28 (364)
T cd06390 1 QIGGLFPNQQ---SQEHAAFRFALSQLTEPP 28 (364)
T ss_pred CCceeeCCCC---hHHHHHHHHHHHHhccCc
Confidence 5899998865 356789999999999875
No 78
>TIGR02848 spore_III_AC stage III sporulation protein AC. Members of this protein family are designated SpoIIIAC, part of the spoIIIA operon of sporulation genes whose mutant phenotype is linked to sporulation stage III. Members of this family are encoded by the genome of a species if and only if that species is capable of endospore formation, as in Bacillus subtilis. The molecular function of this small, probable integral membrane protein is unknown.
Probab=54.67 E-value=13 Score=24.01 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=14.7
Q ss_pred CccchhhHHHHHHHHHH
Q 034542 4 KGKKEQAFFSSLILLII 20 (92)
Q Consensus 4 ~~~~~~~~~~s~~~l~~ 20 (92)
.||+|||++.+|.=+++
T Consensus 26 sGkee~A~~~tLaG~ii 42 (64)
T TIGR02848 26 SGKEEQAQMVTLAGIVV 42 (64)
T ss_pred cCcHHHHHHHHHHHHHH
Confidence 59999999999986664
No 79
>PF15583 Imm41: Immunity protein 41
Probab=50.36 E-value=51 Score=24.62 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=32.6
Q ss_pred HHHHHHH-HHcccchhhhhhhcCCCCCcceEEEEEEEecCCcchHHHHHHHHHHHHHHhccCCCc
Q 034542 14 SLILLII-HLCPSCSELEKVKNNTSFTADEVHVGVILDMRSWSGKISNSCISMAIADFYALNTHY 77 (92)
Q Consensus 14 s~~~l~~-~~~~~~~~~~~~~n~~~~~~~~V~IGaIlDl~S~iGK~a~~aIemAveDfna~~~~~ 77 (92)
-|.+|++ |..--++-|+.+.. .......++| ..-++++.+|..|++||..++..|
T Consensus 78 DLaallLEc~~~G~vnL~~l~~-~~~~~r~IrI--------~at~EE~~~~~~aL~dF~~~p~~Y 133 (158)
T PF15583_consen 78 DLAALLLECKKNGSVNLHDLDE-NDEKDRNIRI--------TATSEENTAINKALKDFARNPLEY 133 (158)
T ss_pred HHHHHHHHHHhcCCEeHHHhhc-CCCcCceEEE--------ecCHHHHHHHHHHHHHHHhCHHhh
Confidence 3444444 33222344444422 2233445666 346889999999999999876554
No 80
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=50.14 E-value=22 Score=27.80 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=27.5
Q ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHhccCCCceeEEEEEee
Q 034542 44 HVGVILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSR 86 (92)
Q Consensus 44 ~IGaIlDl~S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~r 86 (92)
+||.|||-++ ..+..|...|++-+|... ++|+-++.
T Consensus 1 ~ig~if~~~~---~~~~~af~~a~~~~n~~~----~~l~~~~~ 36 (370)
T cd06389 1 QIGGLFPRGA---DQEYSAFRVGMVQFSTSE----FRLTPHID 36 (370)
T ss_pred CCceeecCCc---hHHHHHHHHHHHHhcccC----ceeeeeeE
Confidence 4899999877 346799999999998752 56665543
No 81
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=49.26 E-value=63 Score=24.70 Aligned_cols=49 Identities=8% Similarity=-0.033 Sum_probs=30.7
Q ss_pred HHHHcccchhhhhhhcCCCCCcceEEEEEEE-ecCCcchHHHHHHHHHHHHHH
Q 034542 19 IIHLCPSCSELEKVKNNTSFTADEVHVGVIL-DMRSWSGKISNSCISMAIADF 70 (92)
Q Consensus 19 ~~~~~~~~~~~~~~~n~~~~~~~~V~IGaIl-Dl~S~iGK~a~~aIemAveDf 70 (92)
-||+.- ..+|+-.+|..+. ..-.||+|+ +.++..=......|+.+.++.
T Consensus 26 ~~~~~~-~~~LgY~Pn~~Ar--~t~~Igvv~p~~~~~f~~~~~~gi~~aa~~~ 75 (343)
T PRK10936 26 TWHLAQ-RTSLQYSPLLKAK--KAWKLCALYPHLKDSYWLSVNYGMVEEAKRL 75 (343)
T ss_pred HHHHHh-hcccccccccccC--CCeEEEEEecCCCchHHHHHHHHHHHHHHHh
Confidence 355533 3445555555432 367899999 555666566666788888775
No 82
>PF07769 PsiF_repeat: psiF repeat; InterPro: IPR011690 This region is approximately 35 residues long. It is found repeated in a number of putative phosphate starvation-inducible proteins expressed by various bacterial species. PsiF (Q7AH28 from SWISSPROT) is known to be an example of such phosphate starvation-inducible proteins [].
Probab=40.62 E-value=15 Score=21.13 Aligned_cols=15 Identities=47% Similarity=0.762 Sum_probs=12.9
Q ss_pred CcCccchhhHHHHHH
Q 034542 2 ELKGKKEQAFFSSLI 16 (92)
Q Consensus 2 ~~~~~~~~~~~~s~~ 16 (92)
.|||...++|+.+|+
T Consensus 20 ~LkGdeRK~FMs~CL 34 (35)
T PF07769_consen 20 SLKGDERKAFMSSCL 34 (35)
T ss_pred ccccHHHHHHHHHHc
Confidence 379999999999874
No 83
>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]
Probab=39.51 E-value=67 Score=25.62 Aligned_cols=55 Identities=24% Similarity=0.304 Sum_probs=37.0
Q ss_pred HHHHHHHHcccchhhhhhhcCCCCCcceEEEEEEEecCCcch-------------HHHHHHHHHHHHHHhc
Q 034542 15 LILLIIHLCPSCSELEKVKNNTSFTADEVHVGVILDMRSWSG-------------KISNSCISMAIADFYA 72 (92)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~n~~~~~~~~V~IGaIlDl~S~iG-------------K~a~~aIemAveDfna 72 (92)
-+++.=+|-| +|.++...++...-.++-.+|+...|..| |++|.||+++..-.-.
T Consensus 120 ~il~~Q~~lP---LLkkaas~~~gd~~s~~raaIinisS~~~s~~~~~~~~~~AYrmSKaAlN~f~ksls~ 187 (249)
T KOG1611|consen 120 PILLTQAFLP---LLKKAASKVSGDGLSVSRAAIINISSSAGSIGGFRPGGLSAYRMSKAALNMFAKSLSV 187 (249)
T ss_pred HHHHHHHHHH---HHHHHhhcccCCcccccceeEEEeeccccccCCCCCcchhhhHhhHHHHHHHHHHhhh
Confidence 3444457777 46667777666666677777776655443 8899999998875543
No 84
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=35.27 E-value=1.2e+02 Score=21.43 Aligned_cols=44 Identities=9% Similarity=0.069 Sum_probs=25.1
Q ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCC
Q 034542 44 HVGVILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQG 90 (92)
Q Consensus 44 ~IGaIlDl~S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~ 90 (92)
+||++++.+...-.....+|+..++...-. .+.++++.+.|+..
T Consensus 1 ~igv~~~~~~~~~~~~~~gi~~~~~~~g~~---~g~~v~l~~~~~~~ 44 (281)
T cd06325 1 KVGILQLVEHPALDAARKGFKDGLKEAGYK---EGKNVKIDYQNAQG 44 (281)
T ss_pred CeEEecCCCCcchHHHHHHHHHHHHHhCcc---CCceEEEEEecCCC
Confidence 478888766655555555555555544221 12456666666654
No 85
>PF14967 FAM70: FAM70 protein
Probab=32.97 E-value=15 Score=30.28 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=17.5
Q ss_pred CCcceEEE-----EEEEecCCcchHHHH
Q 034542 38 FTADEVHV-----GVILDMRSWSGKISN 60 (92)
Q Consensus 38 ~~~~~V~I-----GaIlDl~S~iGK~a~ 60 (92)
.|..+|.| |+||.++|..|=+..
T Consensus 50 TRTeNVtVgGYyPGIILgFGSFLGIiGi 77 (327)
T PF14967_consen 50 TRTENVTVGGYYPGIILGFGSFLGIIGI 77 (327)
T ss_pred eeecceEecccccceEEeehhHHHHhhh
Confidence 36778888 589999998886543
No 86
>TIGR03475 tap_IncFII_lead RepA leader peptide Tap. This protein is a translated leader peptide that actis in the regulation of the expression of the plasmid replication protein RepA in incF2 group plasmids.
Probab=29.96 E-value=42 Score=18.19 Aligned_cols=14 Identities=36% Similarity=0.425 Sum_probs=10.9
Q ss_pred cchhhHHHHHHHHH
Q 034542 6 KKEQAFFSSLILLI 19 (92)
Q Consensus 6 ~~~~~~~~s~~~l~ 19 (92)
.|-|.||+-.|+|.
T Consensus 3 rKvQ~~FLc~~LL~ 16 (26)
T TIGR03475 3 RKVQYLFLCHLLLP 16 (26)
T ss_pred hhHHHHHHHHHHhh
Confidence 47899998887765
No 87
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=25.81 E-value=1.4e+02 Score=20.58 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=19.8
Q ss_pred EEEEEE-ecCCcchHHHHHHHHHHHHH
Q 034542 44 HVGVIL-DMRSWSGKISNSCISMAIAD 69 (92)
Q Consensus 44 ~IGaIl-Dl~S~iGK~a~~aIemAveD 69 (92)
+||+|+ +..+.....-..+|+.|.+.
T Consensus 1 ~ig~i~p~~~~~~~~~~~~~~~~~a~~ 27 (267)
T cd01536 1 KIGLVVPSLNNPFWQAMNKGAEAAAKE 27 (267)
T ss_pred CEEEEeccccCHHHHHHHHHHHHHHHh
Confidence 478888 45677778888888888777
No 88
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=25.36 E-value=1e+02 Score=19.97 Aligned_cols=28 Identities=21% Similarity=0.138 Sum_probs=22.0
Q ss_pred EEEEEecC--CcchHHHHHHHHHHHHHHhc
Q 034542 45 VGVILDMR--SWSGKISNSCISMAIADFYA 72 (92)
Q Consensus 45 IGaIlDl~--S~iGK~a~~aIemAveDfna 72 (92)
-|+|||=+ .+-.-+-..|+|+|.+|+-.
T Consensus 25 s~iiFDNded~tdSa~llp~ie~a~~~~r~ 54 (65)
T PF06117_consen 25 SDIIFDNDEDKTDSAALLPAIEQARADVRP 54 (65)
T ss_pred CCeeecCCCcccchHHHHHHHHHHHHHHHH
Confidence 47889764 46677788999999999963
No 89
>PF15621 PROL5-SMR: Proline-rich submaxillary gland androgen-regulated family
Probab=25.00 E-value=45 Score=23.61 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=15.9
Q ss_pred chhhHHHHHHHHHHHHccc
Q 034542 7 KEQAFFSSLILLIIHLCPS 25 (92)
Q Consensus 7 ~~~~~~~s~~~l~~~~~~~ 25 (92)
|.--|.+.||+|+-||.+.
T Consensus 2 K~L~li~GLw~Li~CF~~~ 20 (113)
T PF15621_consen 2 KSLYLIFGLWALIGCFTPG 20 (113)
T ss_pred cceehHHHHHHHHHHcccc
Confidence 5556889999999999883
No 90
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=24.86 E-value=2.5e+02 Score=19.62 Aligned_cols=31 Identities=19% Similarity=0.346 Sum_probs=24.6
Q ss_pred eEEEEEEEecCCcch----HHHHHHHHHHHHHHhc
Q 034542 42 EVHVGVILDMRSWSG----KISNSCISMAIADFYA 72 (92)
Q Consensus 42 ~V~IGaIlDl~S~iG----K~a~~aIemAveDfna 72 (92)
++.|..++|.+..++ ..++.+++.+++.|..
T Consensus 2 ~~dvv~vlD~S~Sm~~~~~~~~k~~~~~~~~~l~~ 36 (186)
T cd01480 2 PVDITFVLDSSESVGLQNFDITKNFVKRVAERFLK 36 (186)
T ss_pred CeeEEEEEeCCCccchhhHHHHHHHHHHHHHHHhh
Confidence 357889999999888 5667778888888854
No 91
>PF08048 RepA1_leader: Tap RepA1 leader peptide; InterPro: IPR012605 This entry represents of the RepA1 leader peptide known as Tap found in IncFII plasmids. The frequency of replication of IncFII plasmid NR1 during the cell division cycle is regulated by the control of the synthesis of the plasmid-specific replication initiation protein (RepA1). When RepA1 is synthesised, it binds to the plasmid replication origin (ori) and effects the assembly of a replication complex composed of host proteins that mediate the replication of the plasmid [, ]. The tap gene encodes a 24-amino acid peptide whose translation is required for the translation of repA.
Probab=23.09 E-value=67 Score=17.24 Aligned_cols=14 Identities=36% Similarity=0.425 Sum_probs=10.6
Q ss_pred cchhhHHHHHHHHH
Q 034542 6 KKEQAFFSSLILLI 19 (92)
Q Consensus 6 ~~~~~~~~s~~~l~ 19 (92)
.|-|.||+-.|+|-
T Consensus 3 rK~Q~~FLc~lLL~ 16 (25)
T PF08048_consen 3 RKVQYLFLCHLLLP 16 (25)
T ss_pred hhHHHHHHHHHHhh
Confidence 47789998877764
No 92
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=22.35 E-value=3.5e+02 Score=20.47 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcccchhhhhhhcCCCCCcceEEEEEEE-ecCCcchHHHHHHHHHHHHHH
Q 034542 12 FSSLILLIIHLCPSCSELEKVKNNTSFTADEVHVGVIL-DMRSWSGKISNSCISMAIADF 70 (92)
Q Consensus 12 ~~s~~~l~~~~~~~~~~~~~~~n~~~~~~~~V~IGaIl-Dl~S~iGK~a~~aIemAveDf 70 (92)
-.+++++.+++.++ .+.....||+|+ ++....=.....+|+.+.++.
T Consensus 6 ~~~~~~~~~~~~~~------------~~~~~~~Igvv~~~~~~~f~~~~~~gi~~~a~~~ 53 (330)
T PRK15395 6 TLSALMASMLFGAA------------AAAADTRIGVTIYKYDDNFMSVVRKAIEKDAKAA 53 (330)
T ss_pred HHHHHHHHHhhcch------------hhcCCceEEEEEecCcchHHHHHHHHHHHHHHhc
Confidence 34455555566553 223457899888 555545555556677777765
No 93
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=20.92 E-value=89 Score=21.22 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=17.5
Q ss_pred CcCccchhhHHHHHHHHHHHH
Q 034542 2 ELKGKKEQAFFSSLILLIIHL 22 (92)
Q Consensus 2 ~~~~~~~~~~~~s~~~l~~~~ 22 (92)
.+|-|+-+.|+.++.+++++-
T Consensus 6 ~lk~~~~kkFl~~l~~vfiia 26 (85)
T PF10749_consen 6 KLKTKEGKKFLLALAIVFIIA 26 (85)
T ss_pred HhcChhhhHHHHHHHHHHHHH
Confidence 368889999999999998743
Done!