Query 034542
Match_columns 92
No_of_seqs 105 out of 218
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 05:55:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034542.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034542hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3om0_A Glutamate receptor, ion 98.6 1.2E-07 4E-12 70.5 6.4 51 41-91 3-54 (393)
2 3o21_A Glutamate receptor 3; p 98.2 2.2E-06 7.5E-11 64.5 6.8 48 40-90 3-52 (389)
3 3qek_A NMDA glutamate receptor 98.1 3.4E-06 1.2E-10 62.4 6.0 48 39-91 2-49 (384)
4 3h6g_A Glutamate receptor, ion 98.1 4.5E-06 1.5E-10 61.8 5.8 50 40-89 2-53 (395)
5 4f11_A Gamma-aminobutyric acid 98.1 7.7E-06 2.6E-10 61.2 6.6 52 39-91 11-68 (433)
6 4gnr_A ABC transporter substra 98.0 7.3E-06 2.5E-10 59.5 5.3 52 40-91 5-59 (353)
7 4gpa_A Glutamate receptor 4; P 98.0 6.1E-06 2.1E-10 59.8 4.6 49 39-90 2-52 (389)
8 1jdp_A NPR-C, atrial natriuret 97.9 3.3E-05 1.1E-09 58.1 7.1 53 40-92 7-67 (441)
9 3saj_A Glutamate receptor 1; r 97.8 3.2E-05 1.1E-09 57.5 5.6 44 39-90 7-50 (384)
10 3hsy_A Glutamate receptor 2; l 97.7 6E-05 2.1E-09 55.9 5.3 42 42-90 2-43 (376)
11 1dp4_A Atrial natriuretic pept 97.6 0.00013 4.6E-09 54.2 6.9 49 42-90 2-55 (435)
12 3h5l_A Putative branched-chain 97.5 0.00019 6.5E-09 53.4 6.6 52 40-91 12-67 (419)
13 3lkb_A Probable branched-chain 97.5 0.00029 9.8E-09 51.7 7.0 52 40-91 5-59 (392)
14 3i45_A Twin-arginine transloca 97.5 0.00021 7.1E-09 52.5 6.1 52 40-91 3-57 (387)
15 3n0x_A Possible substrate bind 97.4 0.00018 6.3E-09 52.8 5.0 51 41-91 3-57 (374)
16 2e4u_A Metabotropic glutamate 97.4 0.00029 1E-08 55.5 6.0 52 40-91 12-77 (555)
17 3ipc_A ABC transporter, substr 97.3 0.00065 2.2E-08 48.9 6.3 50 42-91 2-54 (356)
18 3eaf_A ABC transporter, substr 97.2 0.00062 2.1E-08 50.2 6.0 51 41-91 3-60 (391)
19 3lop_A Substrate binding perip 97.2 0.00054 1.8E-08 49.7 5.3 52 40-91 3-57 (364)
20 3kg2_A Glutamate receptor 2; I 97.1 0.00069 2.4E-08 54.7 5.5 42 42-90 2-43 (823)
21 4f06_A Extracellular ligand-bi 97.1 0.00063 2.2E-08 50.2 4.7 49 40-90 3-54 (371)
22 3mq4_A Mglur7, metabotropic gl 97.1 0.0011 3.9E-08 51.3 6.3 52 40-91 14-79 (481)
23 3hut_A Putative branched-chain 97.0 0.0017 5.7E-08 46.8 6.3 51 41-91 3-56 (358)
24 1usg_A Leucine-specific bindin 96.9 0.0024 8.2E-08 45.4 6.3 50 42-91 2-54 (346)
25 3td9_A Branched chain amino ac 96.8 0.0015 5.3E-08 47.2 4.6 51 38-91 12-65 (366)
26 3i09_A Periplasmic branched-ch 96.7 0.0034 1.2E-07 45.7 6.3 50 40-91 2-55 (375)
27 4eyg_A Twin-arginine transloca 96.7 0.0025 8.6E-08 45.8 5.2 50 40-91 4-56 (368)
28 3n0w_A ABC branched chain amin 96.6 0.0027 9.3E-08 46.4 4.9 50 40-91 4-57 (379)
29 3sm9_A Mglur3, metabotropic gl 96.3 0.007 2.4E-07 47.2 6.0 53 39-91 10-76 (479)
30 1pea_A Amidase operon; gene re 96.3 0.0059 2E-07 44.8 5.1 52 40-91 5-59 (385)
31 4evq_A Putative ABC transporte 95.8 0.018 6.1E-07 41.5 5.6 50 40-91 14-66 (375)
32 3sg0_A Extracellular ligand-bi 94.5 0.016 5.6E-07 41.6 2.1 46 40-91 25-73 (386)
33 3ks9_A Mglur1, metabotropic gl 94.2 0.11 3.7E-06 40.6 6.4 53 39-91 14-84 (496)
34 3snr_A Extracellular ligand-bi 94.1 0.019 6.6E-07 40.7 1.8 46 40-91 5-53 (362)
35 3ckm_A YRAM (HI1655), LPOA; pe 92.1 0.055 1.9E-06 39.3 1.7 42 42-92 2-46 (327)
36 2h4a_A YRAM (HI1655); perplasm 76.1 1.4 4.7E-05 32.9 2.3 40 44-92 2-44 (325)
37 3qel_B Glutamate [NMDA] recept 57.9 15 0.00051 27.2 4.6 33 40-77 2-34 (364)
38 2qh8_A Uncharacterized protein 43.4 41 0.0014 23.5 4.8 50 39-91 5-54 (302)
39 3pvh_A UPF0603 protein AT1G547 25.9 1E+02 0.0036 20.5 4.4 40 47-89 17-56 (153)
40 3b0c_W CENP-W, centromere prot 25.4 37 0.0013 20.5 1.8 20 53-72 21-40 (76)
41 1b67_A Protein (histone HMFA); 25.0 48 0.0017 19.2 2.3 20 52-71 17-36 (68)
No 1
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=98.56 E-value=1.2e-07 Score=70.49 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=46.9
Q ss_pred ceEEEEEEEecCCcchHHHHHHHHHHHHHHhccCCCce-eEEEEEeecCCCC
Q 034542 41 DEVHVGVILDMRSWSGKISNSCISMAIADFYALNTHYK-TRLVLHSRDSQGI 91 (92)
Q Consensus 41 ~~V~IGaIlDl~S~iGK~a~~aIemAveDfna~~~~~~-TrL~L~~rDS~~~ 91 (92)
.+|+||+|+++++..|+..+.|+++|++++|++...++ .+|.++++|+.++
T Consensus 3 ~~ikIG~~~~~s~~~G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~ 54 (393)
T 3om0_A 3 SSLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRD 54 (393)
T ss_dssp CEEEEEEEECCCCSSCCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSS
T ss_pred cceeEEEEecCCCcccHHHHHHHHHHHHHHhcCcccccCcEEEEEEEecCCC
Confidence 47999999999999999999999999999999877664 8999999999886
No 2
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=98.24 E-value=2.2e-06 Score=64.51 Aligned_cols=48 Identities=10% Similarity=0.143 Sum_probs=43.2
Q ss_pred cceEEEEEEEecCCcchHHHHHHHHHHHHHHhccCCC-c-eeEEEEEeecCCC
Q 034542 40 ADEVHVGVILDMRSWSGKISNSCISMAIADFYALNTH-Y-KTRLVLHSRDSQG 90 (92)
Q Consensus 40 ~~~V~IGaIlDl~S~iGK~a~~aIemAveDfna~~~~-~-~TrL~L~~rDS~~ 90 (92)
|.+|+||+|++++.. ..+.|+++|++++|++... + +.+|.++++|++|
T Consensus 3 ~~~i~IG~i~~~sg~---~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~ 52 (389)
T 3o21_A 3 PNTISIGGLFMRNTV---QEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDS 52 (389)
T ss_dssp CSEEEEEEEECTTCH---HHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCT
T ss_pred CceeEEEEEeCCCCH---HHHHHHHHHHHHHhcCccccCCCcEEEEEEEecCC
Confidence 678999999999876 8899999999999998766 3 5899999999988
No 3
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=98.15 E-value=3.4e-06 Score=62.36 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=42.7
Q ss_pred CcceEEEEEEEecCCcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 39 TADEVHVGVILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 39 ~~~~V~IGaIlDl~S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
.|.+|+||+|++++ ..+.|+++|++++|+.....+.+|++...|+++|
T Consensus 2 ~~~~i~IG~i~~~s-----~~~~~~~lAv~~iN~~~~~~~~~l~~~~~d~~~d 49 (384)
T 3qek_A 2 DPKIVNIGAVLSTK-----KHEQIFREAVNQANKRHFTRKIQLQATSVTHRPN 49 (384)
T ss_dssp CCEEEEEEEEESSH-----HHHHHHHHHHHHHHHHSCCSSEEEEEEEEECCSS
T ss_pred CceEEEEeEEeeCc-----hHHHHHHHHHHHHhccccCCceEEEEEEecccCC
Confidence 47789999999998 7899999999999998766568999999999886
No 4
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=98.11 E-value=4.5e-06 Score=61.79 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=43.5
Q ss_pred cceEEEEEEEecC-CcchHHHHHHHHHHHHHHhccCCCce-eEEEEEeecCC
Q 034542 40 ADEVHVGVILDMR-SWSGKISNSCISMAIADFYALNTHYK-TRLVLHSRDSQ 89 (92)
Q Consensus 40 ~~~V~IGaIlDl~-S~iGK~a~~aIemAveDfna~~~~~~-TrL~L~~rDS~ 89 (92)
|..|+||+|++++ +..|+..+.|+++|++++|++...++ .+|.++++|..
T Consensus 2 ~~~i~IG~l~~~sg~~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~ 53 (395)
T 3h6g_A 2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKIN 53 (395)
T ss_dssp CEEEEEEEEEEESSSCSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEE
T ss_pred CcceEEEEEecCCCcccchHHHHHHHHHHHHHhcCccccCCceEEEEEeecC
Confidence 6789999999994 68899999999999999999877774 79999997654
No 5
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=98.07 E-value=7.7e-06 Score=61.22 Aligned_cols=52 Identities=12% Similarity=0.071 Sum_probs=45.5
Q ss_pred CcceEEEEEEEecCC-----cchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCC
Q 034542 39 TADEVHVGVILDMRS-----WSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQGI 91 (92)
Q Consensus 39 ~~~~V~IGaIlDl~S-----~iGK~a~~aIemAveDfna~~~~~-~TrL~L~~rDS~~~ 91 (92)
...+|+||++++++- ..|+..+.++++|++++|++ ..+ +.+|.++++|+.++
T Consensus 11 ~~~~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~-g~l~g~~l~l~~~D~~~~ 68 (433)
T 4f11_A 11 SSPPLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNE-SLLRPYFLDLRLYDTECD 68 (433)
T ss_dssp CCCEEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHT-TTTTTCEEEEEEEECTTC
T ss_pred CCCceEEEEEEEecCCCCCCccchhHHHHHHHHHHHHhcc-CCCCCCEEEEEEecCCCC
Confidence 456899999999986 57899999999999999998 555 37999999999986
No 6
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=98.01 E-value=7.3e-06 Score=59.45 Aligned_cols=52 Identities=10% Similarity=0.185 Sum_probs=45.8
Q ss_pred cceEEEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 40 ADEVHVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 40 ~~~V~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
..+|+||++++++ +..|+..+.++++|++++|+.....+.+|+|.++|++++
T Consensus 5 ~~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~Gr~ielv~~D~~~~ 59 (353)
T 4gnr_A 5 EKTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGIDGKQIEVVDKDNKSE 59 (353)
T ss_dssp -CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBEEEEEEEECTTC
T ss_pred CCeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCC
Confidence 4589999999995 567999999999999999998777678999999999986
No 7
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=97.99 E-value=6.1e-06 Score=59.75 Aligned_cols=49 Identities=14% Similarity=0.107 Sum_probs=39.7
Q ss_pred CcceEEEEEEEecCCcchHHHHHHHHHHHHHHhccCCCce--eEEEEEeecCCC
Q 034542 39 TADEVHVGVILDMRSWSGKISNSCISMAIADFYALNTHYK--TRLVLHSRDSQG 90 (92)
Q Consensus 39 ~~~~V~IGaIlDl~S~iGK~a~~aIemAveDfna~~~~~~--TrL~L~~rDS~~ 90 (92)
-|.+|+||+||+.+ |+....|+++|++++|++...++ .+|..++.|+++
T Consensus 2 ~P~~I~IG~lf~~~---~~~~~~a~~~Av~~iN~~~~ilg~~~~l~~~~~~~~~ 52 (389)
T 4gpa_A 2 FPSSVQIGGLFIRN---TDQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIET 52 (389)
T ss_dssp CCSEEEEEEEECTT---CHHHHHHHHHHHHHHHTCSCTTTCSSEEEEEEEECSS
T ss_pred CCCeEEEEEEEcCC---ChHHHHHHHHHHHHHHhCCCCCCCCEEEEEEEecCCC
Confidence 47899999999977 57788999999999999887773 667776666554
No 8
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=97.88 E-value=3.3e-05 Score=58.06 Aligned_cols=53 Identities=21% Similarity=0.144 Sum_probs=42.6
Q ss_pred cceEEEEEEEecCC---cchHHHHHHHHHHHHHHhccCC----Cc-eeEEEEEeecCCCCC
Q 034542 40 ADEVHVGVILDMRS---WSGKISNSCISMAIADFYALNT----HY-KTRLVLHSRDSQGIG 92 (92)
Q Consensus 40 ~~~V~IGaIlDl~S---~iGK~a~~aIemAveDfna~~~----~~-~TrL~L~~rDS~~~g 92 (92)
+..++||+++.++. ..|+..+.|+++|++++|++.. .+ +.+|.++++|+.|++
T Consensus 7 ~~~i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~ 67 (441)
T 1jdp_A 7 PQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGN 67 (441)
T ss_dssp CCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTST
T ss_pred CCceEEEEEcCCCCCcccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEecCCCch
Confidence 45799999999864 4567888999999999998765 45 489999999999874
No 9
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=97.80 E-value=3.2e-05 Score=57.46 Aligned_cols=44 Identities=7% Similarity=0.139 Sum_probs=39.4
Q ss_pred CcceEEEEEEEecCCcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCC
Q 034542 39 TADEVHVGVILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQG 90 (92)
Q Consensus 39 ~~~~V~IGaIlDl~S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~ 90 (92)
.+.+|+||+|++++.. ..+.|++||++|+|+.. +|+++++|+++
T Consensus 7 ~~~~ikIG~~~~~sg~---~~~~a~~lAv~~iN~~g-----~l~~~~~D~~~ 50 (384)
T 3saj_A 7 MPNNIQIGGLFPNQQS---QEHAAFRFALSQLTEPP-----KLLPQIDIVNI 50 (384)
T ss_dssp CCSEEEEEEEESCSSS---HHHHHHHHHHTTCCSSS-----EEEEEEEECCT
T ss_pred CCcceeEEEEecCCCH---HHHHHHHHHHHHHhcCC-----ccceeeEeccc
Confidence 3678999999999877 88999999999999864 89999999887
No 10
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=97.66 E-value=6e-05 Score=55.95 Aligned_cols=42 Identities=14% Similarity=0.250 Sum_probs=37.0
Q ss_pred eEEEEEEEecCCcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCC
Q 034542 42 EVHVGVILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQG 90 (92)
Q Consensus 42 ~V~IGaIlDl~S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~ 90 (92)
+++||+|++++. ..++.++++|++++|+. +.+|++.++|+++
T Consensus 2 ~i~IG~i~~~sg---~~~~~~~~lAv~~iN~~----g~~l~~~~~d~~~ 43 (376)
T 3hsy_A 2 SIQIGGLFPRGA---DQEYSAFRVGMVQFSTS----EFRLTPHIDNLEV 43 (376)
T ss_dssp EEEEEEEEETTC---HHHHHHHHHHHHHTCCS----SCEEEEEEEEECT
T ss_pred ceeEEEEeCCCC---HHHHHHHHHHHHHHhcC----CeEEEEEEeecCC
Confidence 689999999875 47899999999999987 4699999999876
No 11
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=97.63 E-value=0.00013 Score=54.19 Aligned_cols=49 Identities=14% Similarity=0.078 Sum_probs=41.1
Q ss_pred eEEEEEEEecC---CcchHHHHH-HHHHHHHHHhccCCCc-eeEEEEEeecCCC
Q 034542 42 EVHVGVILDMR---SWSGKISNS-CISMAIADFYALNTHY-KTRLVLHSRDSQG 90 (92)
Q Consensus 42 ~V~IGaIlDl~---S~iGK~a~~-aIemAveDfna~~~~~-~TrL~L~~rDS~~ 90 (92)
.++||+++.++ +..|..... |+++|++++|++...+ +.+|.++++|+++
T Consensus 2 ~i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~ 55 (435)
T 1dp4_A 2 DLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSEN 55 (435)
T ss_dssp EEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBC
T ss_pred ceEEEEEccCcCCCCceeHHHHHHHHHHHHHHHHhCCCCCCCceEEEEEecCcC
Confidence 68999999987 366766666 9999999999987666 5899999999944
No 12
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=97.54 E-value=0.00019 Score=53.41 Aligned_cols=52 Identities=21% Similarity=0.163 Sum_probs=44.4
Q ss_pred cceEEEEEEEecCCc---chHHHHHHHHHHHHHHhccCCCceeEEEEEeecCC-CC
Q 034542 40 ADEVHVGVILDMRSW---SGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQ-GI 91 (92)
Q Consensus 40 ~~~V~IGaIlDl~S~---iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~-~~ 91 (92)
..+++||+++.++.. .|+..+.++++|++++|+.....+.++.|.+.|+. ++
T Consensus 12 ~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~G~~i~l~~~D~~~~~ 67 (419)
T 3h5l_A 12 SDPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGILGRPIELVFADTQSKG 67 (419)
T ss_dssp -CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBTTBCEEEEEEECTTCC
T ss_pred CCCEEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcCceEEEEEEccCCCCC
Confidence 558999999999764 59999999999999999887666789999999986 44
No 13
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=97.51 E-value=0.00029 Score=51.70 Aligned_cols=52 Identities=10% Similarity=-0.169 Sum_probs=45.5
Q ss_pred cceEEEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 40 ADEVHVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 40 ~~~V~IGaIlDl~S---~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
..+++||+++.++- ..|+..+.++++|++++|+.....+.++.|.+.|++++
T Consensus 5 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~G~~i~l~~~D~~~~ 59 (392)
T 3lkb_A 5 QQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVPGVVFNCVVRDDQYN 59 (392)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSSTTEEEEEEEEECTTC
T ss_pred CCceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcCCeEeEEEEecCCCC
Confidence 56899999999864 57899999999999999998776678999999999876
No 14
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=97.49 E-value=0.00021 Score=52.53 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=45.5
Q ss_pred cceEEEEEEEecCC--cchHHHHHHHHHHHHHHhccCCCce-eEEEEEeecCCCC
Q 034542 40 ADEVHVGVILDMRS--WSGKISNSCISMAIADFYALNTHYK-TRLVLHSRDSQGI 91 (92)
Q Consensus 40 ~~~V~IGaIlDl~S--~iGK~a~~aIemAveDfna~~~~~~-TrL~L~~rDS~~~ 91 (92)
..+++||+++.++. ..|+..+.++++|++++|+....++ .++.|.+.|++++
T Consensus 3 ~~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~ 57 (387)
T 3i45_A 3 LEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGD 57 (387)
T ss_dssp CCCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTC
T ss_pred CCCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCC
Confidence 35799999999876 4688899999999999999877777 8999999999876
No 15
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=97.41 E-value=0.00018 Score=52.85 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=42.2
Q ss_pred ceEEEEEEEecCC---cchHHHHHHHHHHHHHHhcc-CCCceeEEEEEeecCCCC
Q 034542 41 DEVHVGVILDMRS---WSGKISNSCISMAIADFYAL-NTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 41 ~~V~IGaIlDl~S---~iGK~a~~aIemAveDfna~-~~~~~TrL~L~~rDS~~~ 91 (92)
.+++||++++++- ..|+..+.++++|++++|+. ....+.+++|.++|++++
T Consensus 3 ~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi~G~~i~l~~~D~~~~ 57 (374)
T 3n0x_A 3 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSK 57 (374)
T ss_dssp -CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEETTEEEEEEEEECTTC
T ss_pred CCEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCcCCEEEEEEEecCCCC
Confidence 4799999999974 56899999999999999873 233357999999999886
No 16
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=97.37 E-value=0.00029 Score=55.50 Aligned_cols=52 Identities=15% Similarity=0.152 Sum_probs=45.4
Q ss_pred cceEEEEEEEecC-------------CcchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCC
Q 034542 40 ADEVHVGVILDMR-------------SWSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQGI 91 (92)
Q Consensus 40 ~~~V~IGaIlDl~-------------S~iGK~a~~aIemAveDfna~~~~~-~TrL~L~~rDS~~~ 91 (92)
+..+.||+++.+. +..|.....||++|+|++|++...+ +.+|.+++.|+.++
T Consensus 12 ~g~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~~~~ 77 (555)
T 2e4u_A 12 EGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSR 77 (555)
T ss_dssp CCSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTC
T ss_pred CCCEEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEECCCC
Confidence 5679999999885 4578888999999999999988777 58999999999876
No 17
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=97.25 E-value=0.00065 Score=48.87 Aligned_cols=50 Identities=14% Similarity=0.021 Sum_probs=43.1
Q ss_pred eEEEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 42 EVHVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 42 ~V~IGaIlDl~S---~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
+++||+++.++. ..|.....++++|++++|+.....+.++.|.+.|++++
T Consensus 2 ~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi~G~~~~l~~~d~~~~ 54 (356)
T 3ipc_A 2 DVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGINGEQIKIVLGDDVSD 54 (356)
T ss_dssp CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBCEEEEEEECTTC
T ss_pred eEEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCC
Confidence 589999999864 48999999999999999987655567899999999876
No 18
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=97.22 E-value=0.00062 Score=50.17 Aligned_cols=51 Identities=18% Similarity=0.083 Sum_probs=43.3
Q ss_pred ceEEEEEEEecCC---cchHHHHHHHHHHHHHHhccCCC--cee--EEEEEeecCCCC
Q 034542 41 DEVHVGVILDMRS---WSGKISNSCISMAIADFYALNTH--YKT--RLVLHSRDSQGI 91 (92)
Q Consensus 41 ~~V~IGaIlDl~S---~iGK~a~~aIemAveDfna~~~~--~~T--rL~L~~rDS~~~ 91 (92)
.+++||+++.++. ..|+..+.++++|++++|+.... .+. ++.|.+.|++++
T Consensus 3 ~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~ 60 (391)
T 3eaf_A 3 LTINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYN 60 (391)
T ss_dssp EEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTC
T ss_pred ccEEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCC
Confidence 4799999999864 57899999999999999987654 445 899999999876
No 19
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=97.18 E-value=0.00054 Score=49.75 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=43.9
Q ss_pred cceEEEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 40 ADEVHVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 40 ~~~V~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
..+++||+|+.++ +..|.....++++|++++|+.....+.++.|.+.|++++
T Consensus 3 ~~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~G~~i~l~~~D~~~~ 57 (364)
T 3lop_A 3 LADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGINGETIRLVARDDEQK 57 (364)
T ss_dssp --CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTC
T ss_pred CCeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcCCeEEEEEEeCCCCC
Confidence 4579999999985 468999999999999999988666668899999999876
No 20
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=97.09 E-value=0.00069 Score=54.67 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=38.1
Q ss_pred eEEEEEEEecCCcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCC
Q 034542 42 EVHVGVILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQG 90 (92)
Q Consensus 42 ~V~IGaIlDl~S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~ 90 (92)
+|+||++++++.. ..+.|+++|+|++|++. .+|.+++.|+.+
T Consensus 2 ~ikIG~l~~~tg~---~~~~a~~lAveeiN~~~----~~l~~~~~D~~~ 43 (823)
T 3kg2_A 2 SIQIGGLFPRGAD---QEYSAFRVGMVQFSTSE----FRLTPHIDNLEV 43 (823)
T ss_dssp EEEEEEEEETTCH---HHHHHHHHHHHHTCCSS----CEEEEEEEEECT
T ss_pred cceEEEEeCCCCh---HHHHHHHHHHHHHhcCC----eEEEEEEEEcCC
Confidence 6899999999866 88999999999999876 699999999988
No 21
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=97.07 E-value=0.00063 Score=50.19 Aligned_cols=49 Identities=27% Similarity=0.224 Sum_probs=40.6
Q ss_pred cceEEEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCC
Q 034542 40 ADEVHVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQG 90 (92)
Q Consensus 40 ~~~V~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~ 90 (92)
+.+|+||++++++ +..|+..+.++++|++++|. ...+.+++|.++|+.+
T Consensus 3 Ad~IkIG~~~plSG~~a~~G~~~~~g~~la~~~~ng--gi~G~~ielv~~D~~~ 54 (371)
T 4f06_A 3 ADTIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHGN--KVAGHTVEFVYRDEVS 54 (371)
T ss_dssp -CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHCS--EETTEEEEEEEEECCS
T ss_pred CCcEEEEEEeCCcCchHHhHHHHHHHHHHHHHHhCC--CCCCEEEEEEEEcCCC
Confidence 5689999999996 46799999999999999983 2334789999999875
No 22
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=97.06 E-value=0.0011 Score=51.32 Aligned_cols=52 Identities=12% Similarity=0.090 Sum_probs=45.1
Q ss_pred cceEEEEEEEecCC-------------cchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCC
Q 034542 40 ADEVHVGVILDMRS-------------WSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQGI 91 (92)
Q Consensus 40 ~~~V~IGaIlDl~S-------------~iGK~a~~aIemAveDfna~~~~~-~TrL~L~~rDS~~~ 91 (92)
+..+.||+++.+.. ..|.....||.+|+|++|+++..+ +.+|.+++.|+.++
T Consensus 14 ~gdi~IG~lf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~~L~~~i~D~~~~ 79 (481)
T 3mq4_A 14 EGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSR 79 (481)
T ss_dssp CCSEEEEEEECSBCCC-----CCSBCTTTTHHHHHHHHHHHHHHTTCSSSSSSCCEEEEEEECTTC
T ss_pred CCCEEEEEEEEceeCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCcCCCceEEEEEEeCCCC
Confidence 56799999999864 357888999999999999988777 58999999999876
No 23
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=97.00 E-value=0.0017 Score=46.77 Aligned_cols=51 Identities=14% Similarity=0.107 Sum_probs=44.2
Q ss_pred ceEEEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 41 DEVHVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 41 ~~V~IGaIlDl~S---~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
.+++||+|+.+.. ..|.....++++|++++|+.....+.++.|.+.|++++
T Consensus 3 ~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~G~~~~l~~~d~~~~ 56 (358)
T 3hut_A 3 LALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVGGRPVDILYADSRDD 56 (358)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTC
T ss_pred ccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCCCC
Confidence 4799999999854 57999999999999999988776677899999999876
No 24
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=96.89 E-value=0.0024 Score=45.43 Aligned_cols=50 Identities=22% Similarity=0.120 Sum_probs=41.4
Q ss_pred eEEEEEEEecCCc---chHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 42 EVHVGVILDMRSW---SGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 42 ~V~IGaIlDl~S~---iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
+++||+++....+ .|.....++++|++++|+.....+.++.+.+.|++++
T Consensus 2 ~i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi~G~~l~l~~~d~~~~ 54 (346)
T 1usg_A 2 DIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACD 54 (346)
T ss_dssp CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTC
T ss_pred cEEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCC
Confidence 5899999988543 6889999999999999987654456788889998875
No 25
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=96.77 E-value=0.0015 Score=47.21 Aligned_cols=51 Identities=20% Similarity=0.153 Sum_probs=41.4
Q ss_pred CCcceEEEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 38 FTADEVHVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 38 ~~~~~V~IGaIlDl~S---~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
..+.+++||+++.++- ..|+..+.++++|++++|+ ..+.++.|.+.|++++
T Consensus 12 ~~~~~~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~---i~G~~i~l~~~D~~~~ 65 (366)
T 3td9_A 12 HMRKVVKIAVILPMTGGISAFGRMVWEGIQIAHEEKPT---VLGEEVELVLLDTRSE 65 (366)
T ss_dssp ----CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCE---ETTEEEEEEEEECTTC
T ss_pred hhcceEEEEEEECCcCcchhcCHHHHHHHHHHHHHhhh---cCCeEEEEEEecCCCC
Confidence 3466899999999975 5789999999999999998 3457999999999876
No 26
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=96.75 E-value=0.0034 Score=45.69 Aligned_cols=50 Identities=32% Similarity=0.369 Sum_probs=40.5
Q ss_pred cceEEEEEEEecCCc---c-hHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 40 ADEVHVGVILDMRSW---S-GKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 40 ~~~V~IGaIlDl~S~---i-GK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
+.+++||++++++.. . |+..+.++++|+++++. ...+.++.|.+.|++++
T Consensus 2 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~~g--gi~G~~i~l~~~D~~~~ 55 (375)
T 3i09_A 2 ADSVKIGFITDMSGLYADIDGQGGLEAIKMAVADFGG--KVNGKPIEVVYADHQNK 55 (375)
T ss_dssp CSSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHHTS--EETTEEEEEEEEECTTC
T ss_pred CCCeEEEEEeCCCcccccccCHHHHHHHHHHHHHhCC--CCCCeEEEEEEecCCCC
Confidence 347999999998654 4 89899999999999942 23357899999999876
No 27
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=96.69 E-value=0.0025 Score=45.84 Aligned_cols=50 Identities=22% Similarity=0.311 Sum_probs=41.0
Q ss_pred cceEEEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 40 ADEVHVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 40 ~~~V~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
..+++||+++.++ +..|.....++++|+++.|.. ..+.++.|.+.|++++
T Consensus 4 ~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~~--i~G~~i~l~~~D~~~~ 56 (368)
T 4eyg_A 4 EDTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGDT--VAGKKIEVILKDDAAI 56 (368)
T ss_dssp CCEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCSE--ETTEEEEEEEEECTTC
T ss_pred CCcEEEEEEeCCcCcchhccHHHHHHHHHHHHHcCCC--CCCeEEEEEEeCCCCC
Confidence 4589999999986 356999999999999998742 2246899999999876
No 28
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=96.60 E-value=0.0027 Score=46.39 Aligned_cols=50 Identities=34% Similarity=0.341 Sum_probs=39.7
Q ss_pred cceEEEEEEEecCCc---c-hHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 40 ADEVHVGVILDMRSW---S-GKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 40 ~~~V~IGaIlDl~S~---i-GK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
..+++||+++.++.. . |+..+.++++|+++++. ...+.++.|.+.|++++
T Consensus 4 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i~g--gi~G~~i~l~~~D~~~~ 57 (379)
T 3n0w_A 4 TGQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDVGG--KALGQPVKLVSADYQMK 57 (379)
T ss_dssp --CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHTTT--EETTEECEEEEEECTTC
T ss_pred CCcEEEEEEeCCccccccccCHHHHHHHHHHHHHhcC--CCCCeEEEEEEeCCCCC
Confidence 457999999998654 4 89999999999999942 23357899999999876
No 29
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=96.32 E-value=0.007 Score=47.18 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=45.1
Q ss_pred CcceEEEEEEEecC------------C-cchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCC
Q 034542 39 TADEVHVGVILDMR------------S-WSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQGI 91 (92)
Q Consensus 39 ~~~~V~IGaIlDl~------------S-~iGK~a~~aIemAveDfna~~~~~-~TrL~L~~rDS~~~ 91 (92)
.+..+.||.+|.+. . ..|.....||.+|+|++|+++..+ +.+|.+++.|+.++
T Consensus 10 ~~GDi~iGglf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~~~~ 76 (479)
T 3sm9_A 10 IEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSR 76 (479)
T ss_dssp ECCSEEEEEEECCEEECC-CCSEEEECTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTC
T ss_pred cCCCEEEEEEEEeEECCCCCCCCcccchhhhHHHHHHHHHHHHHHhCCCccCCCCeEeEEEEecCCC
Confidence 35679999999884 1 268888999999999999988777 58999999999876
No 30
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=96.29 E-value=0.0059 Score=44.78 Aligned_cols=52 Identities=10% Similarity=0.046 Sum_probs=40.3
Q ss_pred cceEEEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 40 ADEVHVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 40 ~~~V~IGaIlDl~S---~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
+..++||+++.... ..|.....++++|++++|+.....+.++.+.+.|++++
T Consensus 5 ~~~~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~G~~l~l~~~d~~~~ 59 (385)
T 1pea_A 5 QERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGD 59 (385)
T ss_dssp ---CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBTTBCCEEEEECCTTC
T ss_pred CCCeEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCCCeEEEEEEeCCCCC
Confidence 44689999998753 47899999999999999987654455788888998765
No 31
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=95.80 E-value=0.018 Score=41.45 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=40.0
Q ss_pred cceEEEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 40 ADEVHVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 40 ~~~V~IGaIlDl~S---~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
..+++||+++.+.. ..|.....++++|+++.|.- ..+.++.|.+.|++++
T Consensus 14 ~~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~ng~--~~g~~~~l~~~d~~~~ 66 (375)
T 4evq_A 14 AGALKVGLLLPYSGTYAPLGEAITRGLELYVQSQGGK--LGGRSISFVKVDDESA 66 (375)
T ss_dssp -CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTTTE--ETTEEEEEEEEECTTC
T ss_pred CCCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhCCC--cCCEEEEEEEecCCCC
Confidence 45799999998764 57899999999999999721 1136899999999876
No 32
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=94.47 E-value=0.016 Score=41.56 Aligned_cols=46 Identities=9% Similarity=0.197 Sum_probs=38.4
Q ss_pred cceEEEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 40 ADEVHVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 40 ~~~V~IGaIlDl~S---~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
+.+++||+++.++. ..|...+.++++|+++++ +.++.|.+.|++++
T Consensus 25 ~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~------G~~i~l~~~d~~~~ 73 (386)
T 3sg0_A 25 QAEIKIGITMSASGPGAALGQPQSKTVAALPKEIG------GEKVTYFALDDESD 73 (386)
T ss_dssp CCCEEEEEEECCSSTTHHHHHHHHHHGGGSCSEET------TEEEEEEEEECTTC
T ss_pred CCceEEEEEeccCCchhhhcHHHHHHHHHHHHHcC------CEEEEEEEecCCCC
Confidence 45799999999864 478899999999999884 25889999999876
No 33
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=94.24 E-value=0.11 Score=40.61 Aligned_cols=53 Identities=15% Similarity=0.090 Sum_probs=42.9
Q ss_pred CcceEEEEEEEecCC-----------------cchHHHHHHHHHHHHHHhccCCCc-eeEEEEEeecCCCC
Q 034542 39 TADEVHVGVILDMRS-----------------WSGKISNSCISMAIADFYALNTHY-KTRLVLHSRDSQGI 91 (92)
Q Consensus 39 ~~~~V~IGaIlDl~S-----------------~iGK~a~~aIemAveDfna~~~~~-~TrL~L~~rDS~~~ 91 (92)
.+.-+.||.+|.+.+ ..|-....||.+|+|++|+++..+ +.+|.+++.|+.++
T Consensus 14 ~~GDi~iGglf~vh~~~~~~~~~~~~c~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~tLg~~i~D~~~~ 84 (496)
T 3ks9_A 14 MDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWH 84 (496)
T ss_dssp ECCSEEEEEEECSBCCCCGGGTTTTCCCCBCTTTTHHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEECTTC
T ss_pred cCCCEEEEEEEEeEEcCccCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCCCCCceEeEEEEEcCCC
Confidence 355689999997643 245677889999999999988777 48999999999876
No 34
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=94.11 E-value=0.019 Score=40.70 Aligned_cols=46 Identities=13% Similarity=0.237 Sum_probs=38.1
Q ss_pred cceEEEEEEEecCC---cchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 40 ADEVHVGVILDMRS---WSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 40 ~~~V~IGaIlDl~S---~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
+.+++||+++.++. ..|.....++++|+++++ +.++.|.+.|++++
T Consensus 5 ~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~------g~~i~l~~~d~~~~ 53 (362)
T 3snr_A 5 TNEITVGISVTTTGPAAALGIPERNALEFVVKEIS------GHPIKIIVLDDGGD 53 (362)
T ss_dssp CCCEEEEEEECCSSTTHHHHHHHHHGGGGSCSEET------TEEEEEEEEECTTC
T ss_pred CCCeEEEEEecccCchhhcCHHHHHHHHHHHHHhC------CeEEEEEEecCCCC
Confidence 55799999999864 468888999999999983 25888999999876
No 35
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=92.14 E-value=0.055 Score=39.26 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=32.9
Q ss_pred eEEEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCCC
Q 034542 42 EVHVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGIG 92 (92)
Q Consensus 42 ~V~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~g 92 (92)
+++||+++.++ +..|+..+-++++|+++ .+++|.+.|+++++
T Consensus 2 V~kIG~l~PlSG~~a~~G~~~~~g~~lA~~g---------~~i~l~~~D~~~~~ 46 (327)
T 3ckm_A 2 VSQIGLLLPLSGDGQILGTTIQSGFNDAKGN---------STIPVQVFDTSMNS 46 (327)
T ss_dssp -CCEEEEECCSSTTHHHHHHHHHHHHHHHTT---------CCSCEEEEETTTSC
T ss_pred EEEEEEEECCCCchHHHHHHHHHHHHHhCCC---------CCceEEEEeCCCCH
Confidence 57899999985 36799999999999852 34667889998864
No 36
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=76.07 E-value=1.4 Score=32.93 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=32.3
Q ss_pred EEEEEEecC---CcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCCC
Q 034542 44 HVGVILDMR---SWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGIG 92 (92)
Q Consensus 44 ~IGaIlDl~---S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~g 92 (92)
+||+++.++ +..|+..+.++++|. .+.+++|.+.|+.+++
T Consensus 2 kIG~llplSG~~a~~G~~~~~G~~lA~---------~G~~i~l~~~D~~~~~ 44 (325)
T 2h4a_A 2 QIGLLLPLSGDGQILGTTIQSGFNDAK---------GNSTIPVQVFDTSMNS 44 (325)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHH---------TTCCSCEEEEETTTSC
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHhc---------cCCCceEEEEECCCCh
Confidence 699999996 467999999999997 1257788899998863
No 37
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=57.86 E-value=15 Score=27.23 Aligned_cols=33 Identities=18% Similarity=-0.036 Sum_probs=18.6
Q ss_pred cceEEEEEEEecCCcchHHHHHHHHHHHHHHhccCCCc
Q 034542 40 ADEVHVGVILDMRSWSGKISNSCISMAIADFYALNTHY 77 (92)
Q Consensus 40 ~~~V~IGaIlDl~S~iGK~a~~aIemAveDfna~~~~~ 77 (92)
|..++|||||.-++- ..+...|++..|.-+..+
T Consensus 2 ~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 34 (364)
T 3qel_B 2 PPSIGIAVILVGTSD-----EVAIKDAHEKDDFHHLSV 34 (364)
T ss_dssp CCEEEEEEEEESSCC-----HHHHTC---------CCS
T ss_pred CCceEEEEEEcccch-----hhhhccccCccccccCCc
Confidence 668999999977665 677888888888655544
No 38
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=43.41 E-value=41 Score=23.53 Aligned_cols=50 Identities=12% Similarity=-0.018 Sum_probs=29.1
Q ss_pred CcceEEEEEEEecCCcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCCCC
Q 034542 39 TADEVHVGVILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQGI 91 (92)
Q Consensus 39 ~~~~V~IGaIlDl~S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~~~ 91 (92)
....-.||+|.+++.+.=-....+|+-+++...- ..+..+.+.+.|++++
T Consensus 5 ~~~t~~IGvi~~~~~p~~~~~~~gi~~~l~~~Gy---~~g~~v~l~~~~~~~~ 54 (302)
T 2qh8_A 5 MAKTAKVAVSQIVEHPALDATRQGLLDGLKAKGY---EEGKNLEFDYKTAQGN 54 (302)
T ss_dssp --CCEEEEEEESSCCHHHHHHHHHHHHHHHHTTC---CBTTTEEEEEEECTTC
T ss_pred ccCCcEEEEEEeccChhHHHHHHHHHHHHHHcCC---CCCCceEEEEecCCCC
Confidence 3457889999887776655555556655554311 1123455666777664
No 39
>3pvh_A UPF0603 protein AT1G54780, chloroplastic; TAP domain, rossman fold, acid phosphatase, arabidopsis THAL thylakoid lumen, hydrolase; 1.60A {Arabidopsis thaliana} PDB: 3pw9_A 3ptj_A
Probab=25.92 E-value=1e+02 Score=20.51 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=32.6
Q ss_pred EEEecCCcchHHHHHHHHHHHHHHhccCCCceeEEEEEeecCC
Q 034542 47 VILDMRSWSGKISNSCISMAIADFYALNTHYKTRLVLHSRDSQ 89 (92)
Q Consensus 47 aIlDl~S~iGK~a~~aIemAveDfna~~~~~~TrL~L~~rDS~ 89 (92)
-|.|..-.....++..|+.+++++..... .++.+.+-++-
T Consensus 17 ~V~D~A~vLs~~~~~~l~~~l~~le~~t~---~qi~Vvtv~~~ 56 (153)
T 3pvh_A 17 YVVDDAGVLSRVTKSDLKKLLSDLEYRKK---LRLNFITVRKL 56 (153)
T ss_dssp SEEETTCCSCHHHHHHHHHHHHHHHHHHC---CEEEEEEESCC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHhhC---CEEEEEEEcCC
Confidence 47899999999999999999999987655 57766666653
No 40
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=25.35 E-value=37 Score=20.51 Aligned_cols=20 Identities=5% Similarity=0.009 Sum_probs=17.3
Q ss_pred CcchHHHHHHHHHHHHHHhc
Q 034542 53 SWSGKISNSCISMAIADFYA 72 (92)
Q Consensus 53 S~iGK~a~~aIemAveDfna 72 (92)
..+++.++.+|.-++++|-.
T Consensus 21 ~~is~~A~~~i~~~~~~Fi~ 40 (76)
T 3b0c_W 21 LRLAANTDLLVHLSFLLFLH 40 (76)
T ss_dssp CEECTTHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHH
Confidence 46889999999999999953
No 41
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=25.01 E-value=48 Score=19.22 Aligned_cols=20 Identities=0% Similarity=0.001 Sum_probs=17.8
Q ss_pred CCcchHHHHHHHHHHHHHHh
Q 034542 52 RSWSGKISNSCISMAIADFY 71 (92)
Q Consensus 52 ~S~iGK~a~~aIemAveDfn 71 (92)
+.++.+.+..++.-|.++|-
T Consensus 17 ~~ris~~A~~~l~~a~e~fi 36 (68)
T 1b67_A 17 AERVSDDARIALAKVLEEMG 36 (68)
T ss_dssp CSEECHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHH
Confidence 36789999999999999985
Done!