Query 034546
Match_columns 91
No_of_seqs 136 out of 1016
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 05:59:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034546.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034546hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 99.9 1.5E-27 5.2E-32 155.0 6.9 72 1-77 34-105 (105)
2 2k9n_A MYB24; R2R3 domain, DNA 99.9 1.4E-27 4.8E-32 156.3 6.6 71 1-76 31-101 (107)
3 3zqc_A MYB3; transcription-DNA 99.9 3.4E-27 1.1E-31 159.2 5.6 73 1-78 32-104 (131)
4 1h8a_C AMV V-MYB, MYB transfor 99.9 1.4E-26 4.9E-31 155.2 6.3 71 1-76 57-127 (128)
5 3osg_A MYB21; transcription-DN 99.9 4.1E-26 1.4E-30 153.1 7.1 71 1-76 40-110 (126)
6 1h89_C C-MYB, MYB proto-oncoge 99.9 1.5E-25 5.2E-30 154.7 6.0 72 1-77 88-159 (159)
7 1h8a_C AMV V-MYB, MYB transfor 99.9 2.2E-23 7.5E-28 139.7 6.2 70 1-75 5-75 (128)
8 1h89_C C-MYB, MYB proto-oncoge 99.9 8.8E-23 3E-27 140.8 6.3 71 1-76 36-107 (159)
9 2cu7_A KIAA1915 protein; nucle 99.8 2E-21 6.9E-26 119.6 7.0 58 21-78 2-59 (72)
10 2llk_A Cyclin-D-binding MYB-li 99.8 1.2E-21 4.3E-26 122.1 5.2 57 11-73 11-67 (73)
11 2d9a_A B-MYB, MYB-related prot 99.8 1.4E-20 4.8E-25 111.9 6.3 55 22-76 2-57 (60)
12 2din_A Cell division cycle 5-l 99.8 2.6E-20 8.9E-25 112.7 6.5 57 22-79 3-59 (66)
13 1guu_A C-MYB, MYB proto-oncoge 99.8 5.6E-20 1.9E-24 106.4 6.2 50 26-75 1-51 (52)
14 1gvd_A MYB proto-oncogene prot 99.8 1E-19 3.4E-24 105.4 6.0 50 26-75 1-51 (52)
15 1x41_A Transcriptional adaptor 99.8 1.9E-19 6.4E-24 107.4 6.3 53 22-74 2-55 (60)
16 2ltp_A Nuclear receptor corepr 99.6 1.6E-20 5.6E-25 120.1 0.0 58 19-76 7-64 (89)
17 2dim_A Cell division cycle 5-l 99.8 5.5E-19 1.9E-23 107.9 6.5 56 22-77 3-59 (70)
18 1w0t_A Telomeric repeat bindin 99.8 6.4E-19 2.2E-23 102.6 6.3 49 27-75 1-52 (53)
19 1ity_A TRF1; helix-turn-helix, 99.7 3E-18 1E-22 104.5 7.1 55 23-77 5-62 (69)
20 2yum_A ZZZ3 protein, zinc fing 99.7 1.6E-18 5.3E-23 107.0 5.7 55 22-76 2-62 (75)
21 2elk_A SPCC24B10.08C protein; 99.7 1.8E-17 6E-22 98.4 6.4 51 23-73 4-56 (58)
22 3sjm_A Telomeric repeat-bindin 99.7 1.3E-17 4.3E-22 101.2 5.7 54 23-76 6-62 (64)
23 2cqr_A RSGI RUH-043, DNAJ homo 99.7 1.5E-16 5.1E-21 99.0 7.0 57 19-75 9-69 (73)
24 1ign_A Protein (RAP1); RAP1,ye 99.7 3.7E-17 1.3E-21 121.2 4.6 56 22-77 2-63 (246)
25 1gv2_A C-MYB, MYB proto-oncoge 99.6 7.3E-16 2.5E-20 99.6 6.7 51 25-75 1-52 (105)
26 3osg_A MYB21; transcription-DN 99.6 2.4E-15 8.2E-20 100.5 6.9 54 22-75 5-58 (126)
27 2ckx_A NGTRF1, telomere bindin 99.6 3.5E-15 1.2E-19 94.8 6.9 49 29-77 1-54 (83)
28 2yus_A SWI/SNF-related matrix- 99.6 2.2E-15 7.6E-20 94.7 5.0 49 24-72 14-62 (79)
29 1x58_A Hypothetical protein 49 99.6 6.7E-15 2.3E-19 89.2 6.8 49 27-75 7-58 (62)
30 2juh_A Telomere binding protei 99.5 8.8E-15 3E-19 98.7 6.7 54 22-75 11-69 (121)
31 2cjj_A Radialis; plant develop 99.5 1.5E-14 5E-19 93.6 6.5 49 28-76 8-60 (93)
32 2aje_A Telomere repeat-binding 99.5 1.8E-14 6.2E-19 95.1 6.9 52 24-75 9-65 (105)
33 2k9n_A MYB24; R2R3 domain, DNA 99.5 1.3E-14 4.6E-19 94.4 5.9 48 28-75 1-49 (107)
34 3zqc_A MYB3; transcription-DNA 99.5 2.2E-14 7.6E-19 96.2 5.2 48 28-75 2-50 (131)
35 2roh_A RTBP1, telomere binding 99.5 1.1E-13 3.7E-18 93.5 6.4 53 24-76 27-84 (122)
36 2eqr_A N-COR1, N-COR, nuclear 99.4 1E-12 3.5E-17 78.4 6.1 46 28-73 12-57 (61)
37 3hm5_A DNA methyltransferase 1 99.4 1.1E-12 3.9E-17 84.9 6.5 64 8-80 19-87 (93)
38 1ign_A Protein (RAP1); RAP1,ye 99.3 4E-12 1.4E-16 94.2 6.9 76 1-76 43-200 (246)
39 2cqq_A RSGI RUH-037, DNAJ homo 99.2 4.2E-11 1.5E-15 74.0 6.2 48 27-75 7-58 (72)
40 2iw5_B Protein corest, REST co 99.2 3.3E-11 1.1E-15 88.8 6.6 67 7-75 114-180 (235)
41 2dim_A Cell division cycle 5-l 99.0 4.7E-11 1.6E-15 72.4 -0.7 31 1-36 39-69 (70)
42 1fex_A TRF2-interacting telome 98.9 3.2E-09 1.1E-13 63.2 5.6 47 28-74 2-58 (59)
43 2juh_A Telomere binding protei 98.8 6.1E-10 2.1E-14 75.0 0.5 52 1-52 51-103 (121)
44 1wgx_A KIAA1903 protein; MYB D 98.8 1.5E-08 5E-13 62.9 5.5 46 29-74 9-58 (73)
45 1ug2_A 2610100B20RIK gene prod 98.6 7.7E-08 2.6E-12 62.2 6.6 45 30-74 35-82 (95)
46 2lr8_A CAsp8-associated protei 98.0 5E-09 1.7E-13 64.5 0.0 44 30-74 16-62 (70)
47 2roh_A RTBP1, telomere binding 98.6 9.1E-09 3.1E-13 69.3 1.0 49 1-49 65-114 (122)
48 2yqk_A Arginine-glutamic acid 98.5 7.4E-07 2.5E-11 53.2 7.0 50 22-71 3-53 (63)
49 4iej_A DNA methyltransferase 1 98.3 2.4E-06 8.2E-11 55.1 7.4 53 28-80 30-87 (93)
50 4eef_G F-HB80.4, designed hema 98.2 2.4E-07 8.3E-12 57.6 0.8 42 29-70 21-66 (74)
51 4a69_C Nuclear receptor corepr 98.2 4.3E-06 1.5E-10 53.5 6.1 44 29-72 44-87 (94)
52 2crg_A Metastasis associated p 98.1 1.1E-05 3.8E-10 49.0 6.2 43 29-71 9-52 (70)
53 2xag_B REST corepressor 1; ami 97.9 1.7E-05 5.7E-10 63.5 5.3 47 28-74 380-426 (482)
54 2d9a_A B-MYB, MYB-related prot 97.8 3.5E-06 1.2E-10 49.1 0.5 22 1-22 38-59 (60)
55 1gvd_A MYB proto-oncogene prot 97.8 3.3E-06 1.1E-10 47.9 0.3 20 1-20 33-52 (52)
56 1guu_A C-MYB, MYB proto-oncoge 97.6 6.4E-06 2.2E-10 46.6 -0.6 20 1-20 33-52 (52)
57 2ckx_A NGTRF1, telomere bindin 97.5 3.5E-05 1.2E-09 48.4 1.7 45 1-45 34-79 (83)
58 2ebi_A DNA binding protein GT- 97.4 0.00016 5.4E-09 44.7 4.0 47 29-75 5-65 (86)
59 1x41_A Transcriptional adaptor 97.2 4.1E-05 1.4E-09 44.8 -0.6 21 1-21 38-58 (60)
60 1ity_A TRF1; helix-turn-helix, 97.1 5.2E-05 1.8E-09 45.3 -0.5 23 1-23 40-64 (69)
61 2din_A Cell division cycle 5-l 96.7 5.5E-05 1.9E-09 44.8 -2.9 23 1-23 37-59 (66)
62 2aje_A Telomere repeat-binding 96.7 0.00032 1.1E-08 45.8 0.5 47 2-48 48-95 (105)
63 3sjm_A Telomeric repeat-bindin 96.6 0.00021 7.3E-09 42.5 -0.8 21 1-21 43-63 (64)
64 2yum_A ZZZ3 protein, zinc fing 96.6 0.0002 6.9E-09 43.2 -1.0 23 1-23 43-65 (75)
65 1w0t_A Telomeric repeat bindin 95.9 0.00081 2.8E-08 38.0 -0.8 17 1-17 32-50 (53)
66 2yus_A SWI/SNF-related matrix- 95.7 0.0031 1.1E-07 38.9 1.2 26 1-26 47-72 (79)
67 1ofc_X ISWI protein; nuclear p 95.4 0.042 1.4E-06 41.6 6.7 47 27-73 109-156 (304)
68 1ofc_X ISWI protein; nuclear p 95.3 0.036 1.2E-06 41.9 5.9 49 27-75 211-275 (304)
69 1irz_A ARR10-B; helix-turn-hel 94.5 0.17 5.7E-06 30.2 6.3 44 28-71 7-55 (64)
70 2ltp_A Nuclear receptor corepr 93.5 0.0068 2.3E-07 37.9 0.0 19 1-19 45-63 (89)
71 2cu7_A KIAA1915 protein; nucle 94.5 0.0025 8.6E-08 38.1 -1.9 23 1-23 38-60 (72)
72 4b4c_A Chromodomain-helicase-D 94.4 0.081 2.8E-06 36.7 5.5 48 27-74 6-58 (211)
73 2xag_B REST corepressor 1; ami 94.4 0.0073 2.5E-07 48.3 0.0 42 30-71 191-232 (482)
74 4b4c_A Chromodomain-helicase-D 93.7 0.09 3.1E-06 36.5 4.6 47 28-74 134-195 (211)
75 2y9y_A Imitation switch protei 92.9 0.17 5.7E-06 39.4 5.3 49 27-75 227-291 (374)
76 2xb0_X Chromo domain-containin 91.3 0.2 6.7E-06 37.2 3.9 27 29-55 169-196 (270)
77 2xb0_X Chromo domain-containin 86.4 2.5 8.6E-05 31.2 6.9 48 28-75 3-55 (270)
78 2o8x_A Probable RNA polymerase 86.1 1.6 5.3E-05 24.1 4.5 42 30-73 15-56 (70)
79 1ku3_A Sigma factor SIGA; heli 84.5 2 6.9E-05 24.4 4.6 45 30-75 10-57 (73)
80 2cjj_A Radialis; plant develop 84.1 0.22 7.7E-06 31.4 0.2 17 1-17 41-57 (93)
81 2p7v_B Sigma-70, RNA polymeras 81.1 2.2 7.6E-05 23.9 3.8 43 31-74 6-51 (68)
82 2yqf_A Ankyrin-1; death domain 80.5 7 0.00024 24.5 6.4 39 30-69 12-50 (111)
83 3hug_A RNA polymerase sigma fa 78.6 4 0.00014 24.2 4.5 38 36-74 42-79 (92)
84 3ulq_B Transcriptional regulat 78.4 6.4 0.00022 23.7 5.5 44 29-75 28-71 (90)
85 1x3u_A Transcriptional regulat 74.0 9.2 0.00031 21.4 5.1 43 30-75 16-58 (79)
86 1or7_A Sigma-24, RNA polymeras 73.7 7.9 0.00027 25.0 5.3 36 38-74 147-182 (194)
87 1tty_A Sigma-A, RNA polymerase 67.9 11 0.00037 22.1 4.6 42 31-74 19-64 (87)
88 2of5_H Leucine-rich repeat and 67.3 8.4 0.00029 24.5 4.2 31 37-68 14-44 (118)
89 1xsv_A Hypothetical UPF0122 pr 66.8 15 0.0005 22.9 5.3 42 31-74 26-67 (113)
90 1je8_A Nitrate/nitrite respons 66.8 14 0.00048 21.4 4.9 43 30-75 21-63 (82)
91 2q1z_A RPOE, ECF SIGE; ECF sig 66.7 4.5 0.00015 26.0 2.9 35 39-74 143-177 (184)
92 1wxp_A THO complex subunit 1; 65.9 11 0.00037 23.6 4.5 31 37-68 19-49 (110)
93 1rp3_A RNA polymerase sigma fa 65.6 14 0.00047 24.4 5.2 34 39-73 195-228 (239)
94 3c57_A Two component transcrip 64.6 20 0.00068 21.4 5.5 44 29-75 26-69 (95)
95 3mzy_A RNA polymerase sigma-H 64.0 12 0.00041 23.1 4.5 40 31-73 110-149 (164)
96 1fse_A GERE; helix-turn-helix 63.7 16 0.00055 20.0 5.2 44 29-75 10-53 (74)
97 2o71_A Death domain-containing 63.4 13 0.00044 23.8 4.5 30 39-69 27-56 (115)
98 2of5_A Death domain-containing 62.8 12 0.0004 23.9 4.3 30 39-69 27-56 (114)
99 1tc3_C Protein (TC3 transposas 62.0 13 0.00043 18.2 5.0 38 30-69 5-42 (51)
100 1p4w_A RCSB; solution structur 61.3 25 0.00085 21.5 5.5 44 29-75 33-76 (99)
101 2y9y_A Imitation switch protei 60.7 24 0.00083 27.2 6.4 43 28-70 123-167 (374)
102 1s7o_A Hypothetical UPF0122 pr 57.7 23 0.00079 22.1 5.0 43 30-74 22-64 (113)
103 1fad_A Protein (FADD protein); 56.4 12 0.00041 22.7 3.3 36 33-69 11-46 (99)
104 2rnj_A Response regulator prot 53.9 21 0.00072 20.9 4.1 43 30-75 29-71 (91)
105 2lm1_A Lysine-specific demethy 53.6 33 0.0011 21.1 5.1 37 39-75 49-97 (107)
106 2li6_A SWI/SNF chromatin-remod 53.1 15 0.00053 23.2 3.6 38 38-75 53-98 (116)
107 2jpc_A SSRB; DNA binding prote 51.7 25 0.00087 18.5 4.5 37 37-75 4-40 (61)
108 2jrz_A Histone demethylase jar 50.4 32 0.0011 21.7 4.8 38 38-75 44-93 (117)
109 1u78_A TC3 transposase, transp 44.9 50 0.0017 20.0 5.0 40 29-70 5-44 (141)
110 2bl8_A Enterocine A immunity p 44.8 15 0.0005 23.7 2.4 19 27-45 65-83 (103)
111 1k78_A Paired box protein PAX5 44.4 55 0.0019 20.3 5.3 40 29-70 31-70 (149)
112 2ib1_A Death domain containing 44.0 7.8 0.00027 23.8 1.0 34 33-68 5-38 (91)
113 3clo_A Transcriptional regulat 41.4 45 0.0015 23.0 4.8 44 29-75 196-239 (258)
114 1pdn_C Protein (PRD paired); p 40.2 55 0.0019 19.1 5.3 39 29-69 16-54 (128)
115 2lfw_A PHYR sigma-like domain; 39.9 16 0.00054 23.3 2.0 37 35-72 97-133 (157)
116 2v79_A DNA replication protein 39.6 54 0.0019 21.1 4.7 49 30-79 29-82 (135)
117 2cxy_A BAF250B subunit, HBAF25 39.4 63 0.0022 20.5 4.9 28 48-75 73-104 (125)
118 1c20_A DEAD ringer protein; DN 38.6 68 0.0023 20.4 5.0 38 38-75 56-106 (128)
119 3t72_q RNA polymerase sigma fa 38.2 67 0.0023 19.6 4.9 44 31-75 20-66 (99)
120 2eqy_A RBP2 like, jumonji, at 38.1 67 0.0023 20.4 4.9 38 38-75 46-95 (122)
121 1kkx_A Transcription regulator 38.0 19 0.00065 23.2 2.2 27 49-75 71-97 (123)
122 3szt_A QCSR, quorum-sensing co 36.4 80 0.0027 21.5 5.4 44 29-75 174-217 (237)
123 2q0o_A Probable transcriptiona 35.7 86 0.003 21.1 5.5 44 29-75 174-217 (236)
124 1l0o_C Sigma factor; bergerat 35.1 8 0.00027 25.5 0.0 33 39-72 206-238 (243)
125 1ngr_A P75 low affinity neurot 34.9 29 0.00099 20.8 2.6 30 33-68 12-41 (85)
126 3ezq_B Protein FADD; apoptosis 34.9 58 0.002 20.8 4.2 29 41-70 11-39 (122)
127 2kk0_A AT-rich interactive dom 32.1 91 0.0031 20.3 4.9 38 38-75 68-118 (145)
128 3cz6_A DNA-binding protein RAP 31.9 26 0.0009 24.3 2.2 18 23-40 109-126 (168)
129 2gf5_A FADD protein; death dom 31.5 61 0.0021 21.9 4.1 35 34-69 96-130 (191)
130 2rq5_A Protein jumonji; develo 31.0 89 0.003 20.0 4.6 38 38-75 46-96 (121)
131 1l3l_A Transcriptional activat 30.6 1.1E+02 0.0037 20.6 5.3 44 29-75 172-215 (234)
132 2k27_A Paired box protein PAX- 29.7 80 0.0027 19.9 4.2 38 30-69 25-62 (159)
133 3qp6_A CVIR transcriptional re 28.5 1.2E+02 0.0042 21.1 5.4 44 29-75 196-239 (265)
134 3l46_A Protein ECT2; alternati 26.6 57 0.0019 20.5 3.0 41 11-51 12-52 (112)
135 1ig6_A MRF-2, modulator recogn 25.9 59 0.002 19.9 3.0 38 38-75 37-87 (107)
136 3h8k_B Autocrine motility fact 25.8 43 0.0015 16.5 1.8 10 31-40 1-10 (28)
137 3eyi_A Z-DNA-binding protein 1 24.8 81 0.0028 18.9 3.2 44 30-73 6-50 (72)
138 4d8o_A Ankyrin-2; ZU5, UPA, de 24.6 65 0.0022 26.2 3.6 33 36-69 498-530 (581)
139 2jxj_A Histone demethylase jar 24.5 36 0.0012 20.4 1.7 27 48-74 58-88 (96)
140 2e1c_A Putative HTH-type trans 24.4 1.5E+02 0.005 19.3 4.9 44 30-75 24-68 (171)
141 1dw9_A Cyanate lyase; cyanate 24.0 96 0.0033 21.0 3.9 35 37-72 16-50 (156)
142 3i4p_A Transcriptional regulat 23.7 92 0.0031 20.0 3.7 41 34-75 3-44 (162)
143 1jko_C HIN recombinase, DNA-in 22.6 79 0.0027 15.4 4.6 38 30-69 5-42 (52)
144 1ich_A TNF-1, tumor necrosis f 21.3 89 0.003 20.0 3.2 34 35-69 12-46 (112)
145 3e7l_A Transcriptional regulat 21.0 1.1E+02 0.0038 16.5 4.5 33 33-66 18-50 (63)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.94 E-value=1.5e-27 Score=154.96 Aligned_cols=72 Identities=29% Similarity=0.506 Sum_probs=65.7
Q ss_pred CCccchhhhhccccccCCccccCCCcccCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhhHHH
Q 034546 1 MDKRRRKQAKTTTTTFYSEEVSSIEWEFINMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHGQAF 77 (91)
Q Consensus 1 ~~~~~~~q~~~~~~~~~s~~v~s~~lkkg~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~k~~ 77 (91)
|++|+.+||++||.++++|.+ ++|+||+|||++|+.++..+|++|+.||.+|||||+++|+|||+.++++++
T Consensus 34 l~~Rt~~qcr~Rw~~~l~p~~-----~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 34 LKGRIGKQCRERWHNHLNPEV-----KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp STTCCHHHHHHHHHHTTCCCC-----CCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred hcCCCHHHHHHHHHhccCCcc-----cccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 789999999999999998765 559999999999999999999999999999999999999999999988753
No 2
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.94 E-value=1.4e-27 Score=156.28 Aligned_cols=71 Identities=20% Similarity=0.341 Sum_probs=66.7
Q ss_pred CCccchhhhhccccccCCccccCCCcccCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhhHH
Q 034546 1 MDKRRRKQAKTTTTTFYSEEVSSIEWEFINMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHGQA 76 (91)
Q Consensus 1 ~~~~~~~q~~~~~~~~~s~~v~s~~lkkg~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~k~ 76 (91)
|++|+.+||++||.+||+|.+. +|+||+|||++|+.++..+|++|+.||.+|||||+++|+|||+.++++.
T Consensus 31 ~~~Rt~~qcr~Rw~~~L~p~i~-----~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 31 MITRNPRQCRERWNNYINPALR-----TDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp TTTSCHHHHHHHHHHHSSSCCT-----TCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHccccc-----ccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHHHhhH
Confidence 7899999999999999987664 5999999999999999999999999999999999999999999988764
No 3
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.94 E-value=3.4e-27 Score=159.20 Aligned_cols=73 Identities=25% Similarity=0.457 Sum_probs=68.4
Q ss_pred CCccchhhhhccccccCCccccCCCcccCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhhHHHH
Q 034546 1 MDKRRRKQAKTTTTTFYSEEVSSIEWEFINMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHGQAFA 78 (91)
Q Consensus 1 ~~~~~~~q~~~~~~~~~s~~v~s~~lkkg~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~k~~~ 78 (91)
|++|+.+||++||.+||+|.+. +|+||+|||++|+.+|..+|++|+.||.+|||||+++|+|||+.++++.+.
T Consensus 32 ~~~Rt~~qcr~Rw~~~l~p~~~-----~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~ 104 (131)
T 3zqc_A 32 LPNRSPKQCRERWFNHLDPAVV-----KHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRIS 104 (131)
T ss_dssp CTTSCHHHHHHHHHHHTSTTCC-----CSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHTTGGGCC
T ss_pred HCCCCHHHHHHHHhhccCcccc-----CCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 7899999999999999987655 599999999999999999999999999999999999999999999988654
No 4
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.93 E-value=1.4e-26 Score=155.22 Aligned_cols=71 Identities=28% Similarity=0.509 Sum_probs=66.4
Q ss_pred CCccchhhhhccccccCCccccCCCcccCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhhHH
Q 034546 1 MDKRRRKQAKTTTTTFYSEEVSSIEWEFINMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHGQA 76 (91)
Q Consensus 1 ~~~~~~~q~~~~~~~~~s~~v~s~~lkkg~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~k~ 76 (91)
|++|+.+||++||.++++|.+ ++|+||+|||++|+.++..+|++|+.||.+|||||+++|+|||+.+++++
T Consensus 57 l~~Rt~~qcr~Rw~~~l~p~~-----~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 57 LKGRIGKQCRERWHNHLNPEV-----KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp SSSCCHHHHHHHHHHTTCSSS-----CCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred hcCCcHHHHHHHHHHhccccc-----ccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 789999999999999998765 56999999999999999999999999999999999999999999998875
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.93 E-value=4.1e-26 Score=153.14 Aligned_cols=71 Identities=20% Similarity=0.442 Sum_probs=66.3
Q ss_pred CCccchhhhhccccccCCccccCCCcccCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhhHH
Q 034546 1 MDKRRRKQAKTTTTTFYSEEVSSIEWEFINMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHGQA 76 (91)
Q Consensus 1 ~~~~~~~q~~~~~~~~~s~~v~s~~lkkg~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~k~ 76 (91)
|++|+.+||++||.++|+|.+ ++|+||+|||++|+.++.++|++|+.||.+|||||+++|+|||+.++++.
T Consensus 40 ~~~Rt~~qcr~Rw~~~l~p~~-----~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 40 FPNRNARQCRDRWKNYLAPSI-----SHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CTTCCHHHHHHHHHHHTSTTS-----CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHhhhccccc-----ccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 789999999999999998665 55999999999999999999999999999999999999999999988763
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.92 E-value=1.5e-25 Score=154.75 Aligned_cols=72 Identities=29% Similarity=0.506 Sum_probs=66.4
Q ss_pred CCccchhhhhccccccCCccccCCCcccCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhhHHH
Q 034546 1 MDKRRRKQAKTTTTTFYSEEVSSIEWEFINMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHGQAF 77 (91)
Q Consensus 1 ~~~~~~~q~~~~~~~~~s~~v~s~~lkkg~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~k~~ 77 (91)
|++|+.+|||+||.++++|.+ ++++||+|||.+|+.++..+|++|+.||++|||||+++|+|||+.++++++
T Consensus 88 l~~Rt~~qcr~Rw~~~l~p~~-----~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 88 LKGRIGKQCRERWHNHLNPEV-----KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp STTCCHHHHHHHHHHTTCTTS-----CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred cCCCCHHHHHHHHHHHhCccc-----cccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 789999999999999998765 559999999999999999999999999999999999999999999988753
No 7
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.88 E-value=2.2e-23 Score=139.67 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=48.7
Q ss_pred CCccchhhhhccccccCCccccCCCcccCCCCHHHHHHHHHHHHHhCC-cHHHHhhhCCCCCHHHHHHHHHHHhhH
Q 034546 1 MDKRRRKQAKTTTTTFYSEEVSSIEWEFINMSEQEEDLIYRMYKLVGD-RWALIAGRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 1 ~~~~~~~q~~~~~~~~~s~~v~s~~lkkg~wT~eED~lLi~l~~~~G~-kW~~Ia~~lpGRt~n~vKnrw~~~l~k 75 (91)
|++|+.+||++||.++|+|.+ ++|+||+|||++|+.++..+|+ .|..||.+|||||+.+|++||+.++.+
T Consensus 5 ~~~Rt~~qC~~Rw~~~l~p~~-----~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p 75 (128)
T 1h8a_C 5 IKNRTDVQCQHRWQKVLNPEL-----NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNP 75 (128)
T ss_dssp -----------------CTTC-----CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCS
T ss_pred cCCCCHHHHHHHHHHhhCCCC-----CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccc
Confidence 789999999999999998765 4599999999999999999996 699999999999999999999998865
No 8
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.87 E-value=8.8e-23 Score=140.85 Aligned_cols=71 Identities=17% Similarity=0.320 Sum_probs=59.1
Q ss_pred CCccchhhhhccccccCCccccCCCcccCCCCHHHHHHHHHHHHHhCC-cHHHHhhhCCCCCHHHHHHHHHHHhhHH
Q 034546 1 MDKRRRKQAKTTTTTFYSEEVSSIEWEFINMSEQEEDLIYRMYKLVGD-RWALIAGRIPGRKAEEIERFWIMRHGQA 76 (91)
Q Consensus 1 ~~~~~~~q~~~~~~~~~s~~v~s~~lkkg~wT~eED~lLi~l~~~~G~-kW~~Ia~~lpGRt~n~vKnrw~~~l~k~ 76 (91)
|++|+.+||++||.++|+|.+ ++|+||+|||++|+.++..+|+ .|+.||.+|||||+++|++||+.++.+.
T Consensus 36 l~~Rt~~qcr~Rw~~~l~p~~-----~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~ 107 (159)
T 1h89_C 36 LPNRTDVQCQHRWQKVLNPEL-----IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 107 (159)
T ss_dssp -------CHHHHHHTTTCTTC-----CCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTT
T ss_pred cCCCCHHHHHHHHHHccCCCc-----CCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 689999999999999998754 5699999999999999999996 6999999999999999999999988653
No 9
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.85 E-value=2e-21 Score=119.60 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=54.2
Q ss_pred ccCCCcccCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhhHHHH
Q 034546 21 VSSIEWEFINMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHGQAFA 78 (91)
Q Consensus 21 v~s~~lkkg~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~k~~~ 78 (91)
.++|.+++++||+|||++|++++..+|++|..||.+|||||+++|+|||+.++++...
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~ 59 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVK 59 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999999999999999999999987654
No 10
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.84 E-value=1.2e-21 Score=122.09 Aligned_cols=57 Identities=16% Similarity=0.253 Sum_probs=45.7
Q ss_pred ccccccCCccccCCCcccCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHh
Q 034546 11 TTTTTFYSEEVSSIEWEFINMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRH 73 (91)
Q Consensus 11 ~~~~~~~s~~v~s~~lkkg~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l 73 (91)
.||.++|+|.+.. |+||+|||++|++++.++|++|+.||+.| |||+++|||||+.+.
T Consensus 11 ~~~~~~ldP~i~k-----~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 11 RENLYFQGDRNHV-----GKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp --------CCCCC-----CSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred cceeeecCCCCCC-----CCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 4678888877665 99999999999999999999999999999 999999999998653
No 11
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=1.4e-20 Score=111.89 Aligned_cols=55 Identities=16% Similarity=0.381 Sum_probs=51.6
Q ss_pred cCCCcccCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCCCCCHHHHHHHHHHHhhHH
Q 034546 22 SSIEWEFINMSEQEEDLIYRMYKLVG-DRWALIAGRIPGRKAEEIERFWIMRHGQA 76 (91)
Q Consensus 22 ~s~~lkkg~wT~eED~lLi~l~~~~G-~kW~~Ia~~lpGRt~n~vKnrw~~~l~k~ 76 (91)
++|.+++++||+|||++|++++..+| ++|+.||.+|||||+.+|++||+.+|.+.
T Consensus 2 s~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~ 57 (60)
T 2d9a_A 2 SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGP 57 (60)
T ss_dssp CSCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCc
Confidence 57889999999999999999999999 69999999999999999999999988754
No 12
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.6e-20 Score=112.70 Aligned_cols=57 Identities=25% Similarity=0.291 Sum_probs=52.0
Q ss_pred cCCCcccCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhhHHHHH
Q 034546 22 SSIEWEFINMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHGQAFAD 79 (91)
Q Consensus 22 ~s~~lkkg~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~k~~~~ 79 (91)
.+|.+++++||+|||++|+.++..+|++|+.||. |||||+++|++||+.++.+.+..
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~ 59 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQR 59 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcC
Confidence 3466677999999999999999999999999999 99999999999999999887653
No 13
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.81 E-value=5.6e-20 Score=106.37 Aligned_cols=50 Identities=16% Similarity=0.362 Sum_probs=46.0
Q ss_pred cccCCCCHHHHHHHHHHHHHhCC-cHHHHhhhCCCCCHHHHHHHHHHHhhH
Q 034546 26 WEFINMSEQEEDLIYRMYKLVGD-RWALIAGRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 26 lkkg~wT~eED~lLi~l~~~~G~-kW~~Ia~~lpGRt~n~vKnrw~~~l~k 75 (91)
+++|+||+|||++|++++..+|+ +|+.||.+|||||+.+|++||+.+|.+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999998 899999999999999999999998864
No 14
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.80 E-value=1e-19 Score=105.43 Aligned_cols=50 Identities=18% Similarity=0.366 Sum_probs=46.9
Q ss_pred cccCCCCHHHHHHHHHHHHHhCC-cHHHHhhhCCCCCHHHHHHHHHHHhhH
Q 034546 26 WEFINMSEQEEDLIYRMYKLVGD-RWALIAGRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 26 lkkg~wT~eED~lLi~l~~~~G~-kW~~Ia~~lpGRt~n~vKnrw~~~l~k 75 (91)
|++|+||+|||++|++++..+|+ .|+.||..|||||+.+|++||+.+|.+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999997 599999999999999999999998753
No 15
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=1.9e-19 Score=107.45 Aligned_cols=53 Identities=21% Similarity=0.210 Sum_probs=50.0
Q ss_pred cCCCcccCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCCCCCHHHHHHHHHHHhh
Q 034546 22 SSIEWEFINMSEQEEDLIYRMYKLVG-DRWALIAGRIPGRKAEEIERFWIMRHG 74 (91)
Q Consensus 22 ~s~~lkkg~wT~eED~lLi~l~~~~G-~kW~~Ia~~lpGRt~n~vKnrw~~~l~ 74 (91)
+|+.+.+++||+|||++|++++..+| ++|..||.+|||||+.+|++||+.++.
T Consensus 2 ss~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 2 SSGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 46788999999999999999999999 799999999999999999999998875
No 16
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.64 E-value=1.6e-20 Score=120.14 Aligned_cols=58 Identities=14% Similarity=0.209 Sum_probs=53.5
Q ss_pred ccccCCCcccCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhhHH
Q 034546 19 EEVSSIEWEFINMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHGQA 76 (91)
Q Consensus 19 ~~v~s~~lkkg~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~k~ 76 (91)
....+|.+++|+||+|||++|++++..+|++|+.||.+|||||+++|+|||+.++++.
T Consensus 7 ~~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 7 HSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 3456778888999999999999999999999999999999999999999999998874
No 17
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=5.5e-19 Score=107.91 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=52.2
Q ss_pred cCCCcccCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCCCCCHHHHHHHHHHHhhHHH
Q 034546 22 SSIEWEFINMSEQEEDLIYRMYKLVG-DRWALIAGRIPGRKAEEIERFWIMRHGQAF 77 (91)
Q Consensus 22 ~s~~lkkg~wT~eED~lLi~l~~~~G-~kW~~Ia~~lpGRt~n~vKnrw~~~l~k~~ 77 (91)
+.|.+++|+||+|||++|+.++..+| ++|..||.+|||||+.+|++||+.+|.+.+
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i 59 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSI 59 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcc
Confidence 56889999999999999999999999 799999999999999999999999987643
No 18
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.77 E-value=6.4e-19 Score=102.60 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=46.1
Q ss_pred ccCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCC--CCCHHHHHHHHHHHhhH
Q 034546 27 EFINMSEQEEDLIYRMYKLVG-DRWALIAGRIP--GRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 27 kkg~wT~eED~lLi~l~~~~G-~kW~~Ia~~lp--GRt~n~vKnrw~~~l~k 75 (91)
++++||+|||++|+.++..+| ++|+.||..|| |||+.+|++||..+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 479999999999999999999 69999999999 99999999999998764
No 19
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.75 E-value=3e-18 Score=104.48 Aligned_cols=55 Identities=11% Similarity=0.094 Sum_probs=50.3
Q ss_pred CCCcccCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCC--CCCHHHHHHHHHHHhhHHH
Q 034546 23 SIEWEFINMSEQEEDLIYRMYKLVG-DRWALIAGRIP--GRKAEEIERFWIMRHGQAF 77 (91)
Q Consensus 23 s~~lkkg~wT~eED~lLi~l~~~~G-~kW~~Ia~~lp--GRt~n~vKnrw~~~l~k~~ 77 (91)
++..++++||+|||++|+.++..+| ++|+.||..|| |||+++|++||+.++++.+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i 62 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL 62 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCC
Confidence 3556789999999999999999999 69999999999 9999999999999987654
No 20
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-18 Score=107.00 Aligned_cols=55 Identities=16% Similarity=0.079 Sum_probs=51.4
Q ss_pred cCCCcccCCCCHHHHHHHHHHHHHhC------CcHHHHhhhCCCCCHHHHHHHHHHHhhHH
Q 034546 22 SSIEWEFINMSEQEEDLIYRMYKLVG------DRWALIAGRIPGRKAEEIERFWIMRHGQA 76 (91)
Q Consensus 22 ~s~~lkkg~wT~eED~lLi~l~~~~G------~kW~~Ia~~lpGRt~n~vKnrw~~~l~k~ 76 (91)
++|.+++++||+|||++|++++..+| ++|..||.+|||||+++|++||+.++.+.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999 78999999999999999999999888764
No 21
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.71 E-value=1.8e-17 Score=98.41 Aligned_cols=51 Identities=24% Similarity=0.245 Sum_probs=46.6
Q ss_pred CCCcccCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCC-CCCHHHHHHHHHHHh
Q 034546 23 SIEWEFINMSEQEEDLIYRMYKLVG-DRWALIAGRIP-GRKAEEIERFWIMRH 73 (91)
Q Consensus 23 s~~lkkg~wT~eED~lLi~l~~~~G-~kW~~Ia~~lp-GRt~n~vKnrw~~~l 73 (91)
+..+.+++||+|||++|++++..+| ++|..||.+|| |||+.+|++||+.+.
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3456679999999999999999999 89999999999 999999999998754
No 22
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.71 E-value=1.3e-17 Score=101.18 Aligned_cols=54 Identities=19% Similarity=0.227 Sum_probs=45.9
Q ss_pred CCCcccCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCC--CCCHHHHHHHHHHHhhHH
Q 034546 23 SIEWEFINMSEQEEDLIYRMYKLVG-DRWALIAGRIP--GRKAEEIERFWIMRHGQA 76 (91)
Q Consensus 23 s~~lkkg~wT~eED~lLi~l~~~~G-~kW~~Ia~~lp--GRt~n~vKnrw~~~l~k~ 76 (91)
+...++++||+|||++|++++..+| ++|+.||..+| |||+.+|++||..+++..
T Consensus 6 ~~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 6 TNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 3445789999999999999999999 58999999966 999999999999887653
No 23
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.67 E-value=1.5e-16 Score=98.99 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=50.5
Q ss_pred ccccCCCcccCCCCHHHHHHHHHHHHHhC----CcHHHHhhhCCCCCHHHHHHHHHHHhhH
Q 034546 19 EEVSSIEWEFINMSEQEEDLIYRMYKLVG----DRWALIAGRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 19 ~~v~s~~lkkg~wT~eED~lLi~l~~~~G----~kW~~Ia~~lpGRt~n~vKnrw~~~l~k 75 (91)
+.+.-+...+++||++||.+|+.++..|| ++|..||.+|||||+++|++||+.++..
T Consensus 9 ~~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 9 LRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp CCCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred ccccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 34455677889999999999999999999 7899999999999999999999987653
No 24
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.66 E-value=3.7e-17 Score=121.17 Aligned_cols=56 Identities=11% Similarity=0.229 Sum_probs=47.7
Q ss_pred cCCCcccCCCCHHHHHHHHHHHHHhCCc------HHHHhhhCCCCCHHHHHHHHHHHhhHHH
Q 034546 22 SSIEWEFINMSEQEEDLIYRMYKLVGDR------WALIAGRIPGRKAEEIERFWIMRHGQAF 77 (91)
Q Consensus 22 ~s~~lkkg~wT~eED~lLi~l~~~~G~k------W~~Ia~~lpGRt~n~vKnrw~~~l~k~~ 77 (91)
+.+.+++++||+|||++|+++|.++|++ |+.||++|||||+|+|||||+.+|++.+
T Consensus 2 ~~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~l 63 (246)
T 1ign_A 2 ALPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 63 (246)
T ss_dssp ------CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGC
T ss_pred CcCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhc
Confidence 3567788999999999999999999986 9999999999999999999999998854
No 25
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.62 E-value=7.3e-16 Score=99.60 Aligned_cols=51 Identities=20% Similarity=0.384 Sum_probs=47.8
Q ss_pred CcccCCCCHHHHHHHHHHHHHhCC-cHHHHhhhCCCCCHHHHHHHHHHHhhH
Q 034546 25 EWEFINMSEQEEDLIYRMYKLVGD-RWALIAGRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 25 ~lkkg~wT~eED~lLi~l~~~~G~-kW~~Ia~~lpGRt~n~vKnrw~~~l~k 75 (91)
++++|+||+|||++|+.++..+|. .|..||..|||||+.+|+.||..++.+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p 52 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 52 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCC
Confidence 578999999999999999999997 699999999999999999999988764
No 26
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.59 E-value=2.4e-15 Score=100.53 Aligned_cols=54 Identities=19% Similarity=0.353 Sum_probs=49.8
Q ss_pred cCCCcccCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhhH
Q 034546 22 SSIEWEFINMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 22 ~s~~lkkg~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~k 75 (91)
+.+..++|+||+|||++|+.++..+|.+|..||..|||||+.+|+.||..++..
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p 58 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAP 58 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTST
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhccc
Confidence 456778999999999999999999999999999999999999999999998864
No 27
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.58 E-value=3.5e-15 Score=94.76 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHHHHHhCC-cHHHHhhh----CCCCCHHHHHHHHHHHhhHHH
Q 034546 29 INMSEQEEDLIYRMYKLVGD-RWALIAGR----IPGRKAEEIERFWIMRHGQAF 77 (91)
Q Consensus 29 g~wT~eED~lLi~l~~~~G~-kW~~Ia~~----lpGRt~n~vKnrw~~~l~k~~ 77 (91)
++||+|||+.|+.++.++|+ +|+.|+.. |+|||+++||++|.++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 48999999999999999997 99999996 899999999999999987543
No 28
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.57 E-value=2.2e-15 Score=94.68 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=45.3
Q ss_pred CCcccCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHH
Q 034546 24 IEWEFINMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMR 72 (91)
Q Consensus 24 ~~lkkg~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~ 72 (91)
....+++||+|||++|++++..||++|..||.+|+|||+.+|++||..+
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred ccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 3445689999999999999999999999999999999999999999865
No 29
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=6.7e-15 Score=89.25 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=45.6
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCcHHHHh---hhCCCCCHHHHHHHHHHHhhH
Q 034546 27 EFINMSEQEEDLIYRMYKLVGDRWALIA---GRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 27 kkg~wT~eED~lLi~l~~~~G~kW~~Ia---~~lpGRt~n~vKnrw~~~l~k 75 (91)
++.+||+|||+.|+++|.+||.+|+.|+ .+|+|||+.+||++|..+++.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 6789999999999999999999999999 678999999999999988764
No 30
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.55 E-value=8.8e-15 Score=98.73 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=49.7
Q ss_pred cCCCcccCCCCHHHHHHHHHHHHHhCC-cHHHHhhh----CCCCCHHHHHHHHHHHhhH
Q 034546 22 SSIEWEFINMSEQEEDLIYRMYKLVGD-RWALIAGR----IPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 22 ~s~~lkkg~wT~eED~lLi~l~~~~G~-kW~~Ia~~----lpGRt~n~vKnrw~~~l~k 75 (91)
.++..++++||+|||+.|+.++..||+ +|+.|+.. |+|||+++||++|..+++.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 456778899999999999999999997 99999998 5999999999999999974
No 31
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.53 E-value=1.5e-14 Score=93.63 Aligned_cols=49 Identities=24% Similarity=0.375 Sum_probs=45.4
Q ss_pred cCCCCHHHHHHHHHHHHHhC----CcHHHHhhhCCCCCHHHHHHHHHHHhhHH
Q 034546 28 FINMSEQEEDLIYRMYKLVG----DRWALIAGRIPGRKAEEIERFWIMRHGQA 76 (91)
Q Consensus 28 kg~wT~eED~lLi~l~~~~G----~kW~~Ia~~lpGRt~n~vKnrw~~~l~k~ 76 (91)
.++||+|||++|+.++..|| ++|..||.+|||||+++|++||+.++...
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 47999999999999999996 78999999999999999999999987664
No 32
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.53 E-value=1.8e-14 Score=95.09 Aligned_cols=52 Identities=13% Similarity=0.122 Sum_probs=47.6
Q ss_pred CCcccCCCCHHHHHHHHHHHHHhCC-cHHHHhhhC----CCCCHHHHHHHHHHHhhH
Q 034546 24 IEWEFINMSEQEEDLIYRMYKLVGD-RWALIAGRI----PGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 24 ~~lkkg~wT~eED~lLi~l~~~~G~-kW~~Ia~~l----pGRt~n~vKnrw~~~l~k 75 (91)
...++++||+|||++|+.++..+|. +|+.|+..+ +|||+++||++|..+++.
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 4567899999999999999999997 999999975 899999999999998864
No 33
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.52 E-value=1.3e-14 Score=94.38 Aligned_cols=48 Identities=15% Similarity=0.255 Sum_probs=45.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCC-cHHHHhhhCCCCCHHHHHHHHHHHhhH
Q 034546 28 FINMSEQEEDLIYRMYKLVGD-RWALIAGRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 28 kg~wT~eED~lLi~l~~~~G~-kW~~Ia~~lpGRt~n~vKnrw~~~l~k 75 (91)
+|+||+|||++|+.++..+|. .|..||..|||||+.+|+.||..+|.+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p 49 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINP 49 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcc
Confidence 589999999999999999996 799999999999999999999998765
No 34
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.49 E-value=2.2e-14 Score=96.25 Aligned_cols=48 Identities=25% Similarity=0.425 Sum_probs=45.5
Q ss_pred cCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCCCCCHHHHHHHHHHHhhH
Q 034546 28 FINMSEQEEDLIYRMYKLVG-DRWALIAGRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 28 kg~wT~eED~lLi~l~~~~G-~kW~~Ia~~lpGRt~n~vKnrw~~~l~k 75 (91)
+|+||+|||++|+.++..+| +.|..||..|||||+.+|+.||..+|..
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p 50 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDP 50 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTST
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCc
Confidence 79999999999999999999 6799999999999999999999988865
No 35
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.46 E-value=1.1e-13 Score=93.50 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=47.5
Q ss_pred CCcccCCCCHHHHHHHHHHHHHhCC-cHHHHhhh----CCCCCHHHHHHHHHHHhhHH
Q 034546 24 IEWEFINMSEQEEDLIYRMYKLVGD-RWALIAGR----IPGRKAEEIERFWIMRHGQA 76 (91)
Q Consensus 24 ~~lkkg~wT~eED~lLi~l~~~~G~-kW~~Ia~~----lpGRt~n~vKnrw~~~l~k~ 76 (91)
..-++++||+|||+.|++++.+||. +|+.|+.. |+|||+.+||++|..+++..
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 3456789999999999999999996 99999997 49999999999999998653
No 36
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1e-12 Score=78.45 Aligned_cols=46 Identities=9% Similarity=0.242 Sum_probs=43.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHh
Q 034546 28 FINMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRH 73 (91)
Q Consensus 28 kg~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l 73 (91)
.++||+||++++++++..+|..|..||.+|||||..+|.++|+...
T Consensus 12 ~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 3799999999999999999999999999999999999999998654
No 37
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.37 E-value=1.1e-12 Score=84.93 Aligned_cols=64 Identities=13% Similarity=0.212 Sum_probs=57.9
Q ss_pred hhhccccccCCccccCCCcccCCCCHHHHHHHHHHHHHhCCcHHHHhhhC-----CCCCHHHHHHHHHHHhhHHHHHH
Q 034546 8 QAKTTTTTFYSEEVSSIEWEFINMSEQEEDLIYRMYKLVGDRWALIAGRI-----PGRKAEEIERFWIMRHGQAFADR 80 (91)
Q Consensus 8 q~~~~~~~~~s~~v~s~~lkkg~wT~eED~lLi~l~~~~G~kW~~Ia~~l-----pGRt~n~vKnrw~~~l~k~~~~~ 80 (91)
=+.|+|..||.+ ++||.||++.|+.|+..+|.+|..|+..+ ++||..+||+||++..++-+..+
T Consensus 19 yt~eeY~~~L~~---------~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 19 YSEQEYQLYLHD---------DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCHHHHHHHTCB---------TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHcCC---------CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 467888888865 79999999999999999999999999999 58999999999999998877655
No 38
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.30 E-value=4e-12 Score=94.24 Aligned_cols=76 Identities=7% Similarity=-0.060 Sum_probs=63.5
Q ss_pred CCccchhhhhccccccCCcccc------------------------CCCcccCCCCHHHHHHHHHHHHH-----------
Q 034546 1 MDKRRRKQAKTTTTTFYSEEVS------------------------SIEWEFINMSEQEEDLIYRMYKL----------- 45 (91)
Q Consensus 1 ~~~~~~~q~~~~~~~~~s~~v~------------------------s~~lkkg~wT~eED~lLi~l~~~----------- 45 (91)
|+|||..|||+||..||++.++ -|.--+..||.+||-+|+..+..
T Consensus 43 LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~ 122 (246)
T 1ign_A 43 VPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDP 122 (246)
T ss_dssp STTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCS
T ss_pred cCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCc
Confidence 8999999999999999999886 11112568999999999998876
Q ss_pred ----------------------hCC-------------------------cHHHHhhhCCCCCHHHHHHHHHHHhhHH
Q 034546 46 ----------------------VGD-------------------------RWALIAGRIPGRKAEEIERFWIMRHGQA 76 (91)
Q Consensus 46 ----------------------~G~-------------------------kW~~Ia~~lpGRt~n~vKnrw~~~l~k~ 76 (91)
+|+ .|..||..+|+||++++++||...++..
T Consensus 123 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 123 DTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp SSCCBCC-------------------------------CCCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccccccccchhhhhhhhcccCccccccCCcchhhhccccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 222 7999999999999999999999888764
No 39
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.19 E-value=4.2e-11 Score=73.98 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=43.3
Q ss_pred ccCCCCHHHHHHHHHHHHHhC----CcHHHHhhhCCCCCHHHHHHHHHHHhhH
Q 034546 27 EFINMSEQEEDLIYRMYKLVG----DRWALIAGRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 27 kkg~wT~eED~lLi~l~~~~G----~kW~~Ia~~lpGRt~n~vKnrw~~~l~k 75 (91)
+.++||.|||++|..++..|+ ++|..||.+| |||..+|+++|..+...
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 458999999999999999997 6799999998 99999999999877544
No 40
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.18 E-value=3.3e-11 Score=88.76 Aligned_cols=67 Identities=12% Similarity=0.164 Sum_probs=54.1
Q ss_pred hhhhccccccCCccccCCCcccCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhhH
Q 034546 7 KQAKTTTTTFYSEEVSSIEWEFINMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 7 ~q~~~~~~~~~s~~v~s~~lkkg~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~k 75 (91)
.+|-+-...+..+++.. -..++||+||+.++++++..||..|..||..|+|||+++|+++|+.+.++
T Consensus 114 ~~~~~~Ie~~R~pe~~~--k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 114 EKLDGGIEPYRLPEVIQ--KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp HHSTTTTGGGCCCCCCC--CCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred HHHHhhcccccCCCCCC--ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 34544444455554444 23479999999999999999999999999999999999999999987766
No 41
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=4.7e-11 Score=72.40 Aligned_cols=31 Identities=13% Similarity=0.184 Sum_probs=28.0
Q ss_pred CCccchhhhhccccccCCccccCCCcccCCCCHHHH
Q 034546 1 MDKRRRKQAKTTTTTFYSEEVSSIEWEFINMSEQEE 36 (91)
Q Consensus 1 ~~~~~~~q~~~~~~~~~s~~v~s~~lkkg~wT~eED 36 (91)
|++|+.+|||+||.+||+|.|. +|+||+|||
T Consensus 39 l~~Rt~~qcr~Rw~~~L~p~i~-----~~~wt~eEd 69 (70)
T 2dim_A 39 LHRKSAKQCKARWYEWLDPSIK-----KTEWSGPSS 69 (70)
T ss_dssp STTCCHHHHHHHHHHTSCSSSC-----CCCSCCSCC
T ss_pred hcCCCHHHHHHHHHHHcCCccc-----CCCCChHhc
Confidence 7899999999999999987765 599999998
No 42
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.89 E-value=3.2e-09 Score=63.19 Aligned_cols=47 Identities=11% Similarity=0.248 Sum_probs=42.8
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCc-HHHHhh-hCCCCCHHHHHHHHHHHhh
Q 034546 28 FINMSEQEEDLIYRMYKLV--------GDR-WALIAG-RIPGRKAEEIERFWIMRHG 74 (91)
Q Consensus 28 kg~wT~eED~lLi~l~~~~--------G~k-W~~Ia~-~lpGRt~n~vKnrw~~~l~ 74 (91)
+.+||+|||.+|+..+..+ |++ |..||. .+|++|-.++++||..+|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 4699999999999999999 766 999999 7999999999999987764
No 43
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.81 E-value=6.1e-10 Score=74.99 Aligned_cols=52 Identities=10% Similarity=-0.052 Sum_probs=48.1
Q ss_pred CCccchhhhhccccccCCccccCCCcccC-CCCHHHHHHHHHHHHHhCCcHHH
Q 034546 1 MDKRRRKQAKTTTTTFYSEEVSSIEWEFI-NMSEQEEDLIYRMYKLVGDRWAL 52 (91)
Q Consensus 1 ~~~~~~~q~~~~~~~~~s~~v~s~~lkkg-~wT~eED~lLi~l~~~~G~kW~~ 52 (91)
+++|+..|||+||.+++.....+|++++| +|+++|+++|+.+|..+||+|+.
T Consensus 51 f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~~~h~~~gn~~~~ 103 (121)
T 2juh_A 51 ADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAYWSQQQGK 103 (121)
T ss_dssp CSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHccchhc
Confidence 47999999999999999877778889999 99999999999999999999976
No 44
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.76 E-value=1.5e-08 Score=62.94 Aligned_cols=46 Identities=17% Similarity=0.275 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHHhC----CcHHHHhhhCCCCCHHHHHHHHHHHhh
Q 034546 29 INMSEQEEDLIYRMYKLVG----DRWALIAGRIPGRKAEEIERFWIMRHG 74 (91)
Q Consensus 29 g~wT~eED~lLi~l~~~~G----~kW~~Ia~~lpGRt~n~vKnrw~~~l~ 74 (91)
.+||.+|+.+|..+...|+ ++|..||..+||||..+|+.+|..+++
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 5899999999999998887 469999999999999999999987643
No 45
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.65 E-value=7.7e-08 Score=62.15 Aligned_cols=45 Identities=11% Similarity=0.214 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHHHHHhCC---cHHHHhhhCCCCCHHHHHHHHHHHhh
Q 034546 30 NMSEQEEDLIYRMYKLVGD---RWALIAGRIPGRKAEEIERFWIMRHG 74 (91)
Q Consensus 30 ~wT~eED~lLi~l~~~~G~---kW~~Ia~~lpGRt~n~vKnrw~~~l~ 74 (91)
-||.|||..||....+.|. .|+.||..|.+|+.++|+|||+.+++
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 7999999999999999997 79999999999999999999998764
No 46
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=98.03 E-value=5e-09 Score=64.46 Aligned_cols=44 Identities=9% Similarity=0.215 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHhCC---cHHHHhhhCCCCCHHHHHHHHHHHhh
Q 034546 30 NMSEQEEDLIYRMYKLVGD---RWALIAGRIPGRKAEEIERFWIMRHG 74 (91)
Q Consensus 30 ~wT~eED~lLi~l~~~~G~---kW~~Ia~~lpGRt~n~vKnrw~~~l~ 74 (91)
-||.|||.+|+....+.|. .|+.||..| +||+++|+|||..+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 6999999999999999998 799999999 9999999999987653
No 47
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.59 E-value=9.1e-09 Score=69.31 Aligned_cols=49 Identities=12% Similarity=-0.067 Sum_probs=43.6
Q ss_pred CCccchhhhhccccccCCccccCCCcccCCCCHHH-HHHHHHHHHHhCCc
Q 034546 1 MDKRRRKQAKTTTTTFYSEEVSSIEWEFINMSEQE-EDLIYRMYKLVGDR 49 (91)
Q Consensus 1 ~~~~~~~q~~~~~~~~~s~~v~s~~lkkg~wT~eE-D~lLi~l~~~~G~k 49 (91)
+++|+..|||+||.+++-..-.+|++++|.|+++| +++|+.+|..+||+
T Consensus 65 ~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~~~h~~~g~~ 114 (122)
T 2roh_A 65 VHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLAAQAYWSVD 114 (122)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHHHHHHHHHSS
T ss_pred cCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhhH
Confidence 36899999999999999666667778889999999 89999999999986
No 48
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=7.4e-07 Score=53.20 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=45.2
Q ss_pred cCCCcccCCCCHHHHHHHHHHHHHhCCcHHHHhh-hCCCCCHHHHHHHHHH
Q 034546 22 SSIEWEFINMSEQEEDLIYRMYKLVGDRWALIAG-RIPGRKAEEIERFWIM 71 (91)
Q Consensus 22 ~s~~lkkg~wT~eED~lLi~l~~~~G~kW~~Ia~-~lpGRt~n~vKnrw~~ 71 (91)
+-|.+...+||+||-.+-.+.+..+|..|..|++ .||+||..+|..+|+.
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 3466777899999999999999999999999999 5999999999998874
No 49
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=98.33 E-value=2.4e-06 Score=55.13 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=47.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCcHHHHhhhCC-----CCCHHHHHHHHHHHhhHHHHHH
Q 034546 28 FINMSEQEEDLIYRMYKLVGDRWALIAGRIP-----GRKAEEIERFWIMRHGQAFADR 80 (91)
Q Consensus 28 kg~wT~eED~lLi~l~~~~G~kW~~Ia~~lp-----GRt~n~vKnrw~~~l~k~~~~~ 80 (91)
...||.||-+.|+.|...++-+|..|+..+. .||..++|.||++..++-+..+
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 3689999999999999999999999999974 7999999999999988766544
No 50
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.21 E-value=2.4e-07 Score=57.60 Aligned_cols=42 Identities=19% Similarity=0.308 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHHhCC----cHHHHhhhCCCCCHHHHHHHHH
Q 034546 29 INMSEQEEDLIYRMYKLVGD----RWALIAGRIPGRKAEEIERFWI 70 (91)
Q Consensus 29 g~wT~eED~lLi~l~~~~G~----kW~~Ia~~lpGRt~n~vKnrw~ 70 (91)
++||.+|++++..+...|+. +|..||..+||||..+|+.+|.
T Consensus 21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 68999999999999888874 7999999999999999999874
No 51
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.18 E-value=4.3e-06 Score=53.53 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHH
Q 034546 29 INMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMR 72 (91)
Q Consensus 29 g~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~ 72 (91)
..||+||.++..+.+..+|..|..||..||+||..+|-.+|+..
T Consensus 44 ~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 44 NMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp CCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 58999999999999999999999999999999999999988753
No 52
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.07 E-value=1.1e-05 Score=49.02 Aligned_cols=43 Identities=19% Similarity=0.218 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHhh-hCCCCCHHHHHHHHHH
Q 034546 29 INMSEQEEDLIYRMYKLVGDRWALIAG-RIPGRKAEEIERFWIM 71 (91)
Q Consensus 29 g~wT~eED~lLi~l~~~~G~kW~~Ia~-~lpGRt~n~vKnrw~~ 71 (91)
.+||+||-.+..+.+..+|..|..|++ .||++|..+|..+|+.
T Consensus 9 ~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 9 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 589999999999999999999999999 5999999999999874
No 53
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.86 E-value=1.7e-05 Score=63.53 Aligned_cols=47 Identities=13% Similarity=0.231 Sum_probs=43.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhh
Q 034546 28 FINMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHG 74 (91)
Q Consensus 28 kg~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~ 74 (91)
...||++|-.++++.+.+||-.|..||..++.||..+|+++|..+-+
T Consensus 380 ~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 36999999999999999999999999999999999999999976443
No 54
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=97.81 E-value=3.5e-06 Score=49.14 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=20.6
Q ss_pred CCccchhhhhccccccCCcccc
Q 034546 1 MDKRRRKQAKTTTTTFYSEEVS 22 (91)
Q Consensus 1 ~~~~~~~q~~~~~~~~~s~~v~ 22 (91)
|++|+.+|||+||.+||+|.|+
T Consensus 38 ~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 38 FPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp CSSSCHHHHHHHHHHTSCSSSC
T ss_pred ccCCCHHHHHHHHHHHcCCccC
Confidence 7899999999999999999875
No 55
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=97.80 E-value=3.3e-06 Score=47.91 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=18.7
Q ss_pred CCccchhhhhccccccCCcc
Q 034546 1 MDKRRRKQAKTTTTTFYSEE 20 (91)
Q Consensus 1 ~~~~~~~q~~~~~~~~~s~~ 20 (91)
|++|+.+|||+||.+||+|+
T Consensus 33 ~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 33 LKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp STTCCHHHHHHHHHHTTSCC
T ss_pred cCCCCHHHHHHHHHHHcCcC
Confidence 78999999999999999985
No 56
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.60 E-value=6.4e-06 Score=46.64 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=18.6
Q ss_pred CCccchhhhhccccccCCcc
Q 034546 1 MDKRRRKQAKTTTTTFYSEE 20 (91)
Q Consensus 1 ~~~~~~~q~~~~~~~~~s~~ 20 (91)
|++|+.+|||+||.++|+|+
T Consensus 33 ~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 33 LPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp STTCCHHHHHHHHHHHHSCC
T ss_pred cCCCCHHHHHHHHHHHcCcC
Confidence 78999999999999999985
No 57
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=97.49 E-value=3.5e-05 Score=48.40 Aligned_cols=45 Identities=11% Similarity=-0.031 Sum_probs=36.3
Q ss_pred CCccchhhhhccccccCCccccCCCcccC-CCCHHHHHHHHHHHHH
Q 034546 1 MDKRRRKQAKTTTTTFYSEEVSSIEWEFI-NMSEQEEDLIYRMYKL 45 (91)
Q Consensus 1 ~~~~~~~q~~~~~~~~~s~~v~s~~lkkg-~wT~eED~lLi~l~~~ 45 (91)
+++|+..|||+||.+++-..-.+|.+++| |+.+++.+.|+.+|+.
T Consensus 34 ~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 34 ADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999998655556665555 7888888889999875
No 58
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.41 E-value=0.00016 Score=44.73 Aligned_cols=47 Identities=11% Similarity=0.195 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHHHHhCC----------cHHHHhhhCC----CCCHHHHHHHHHHHhhH
Q 034546 29 INMSEQEEDLIYRMYKLVGD----------RWALIAGRIP----GRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 29 g~wT~eED~lLi~l~~~~G~----------kW~~Ia~~lp----GRt~n~vKnrw~~~l~k 75 (91)
..||++|-.+||.++..+.. .|..||..|. .||+.+|++.|.++.+.
T Consensus 5 ~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 5 ETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999987432 5999999963 79999999999876554
No 59
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.18 E-value=4.1e-05 Score=44.75 Aligned_cols=21 Identities=10% Similarity=0.295 Sum_probs=18.8
Q ss_pred CCccchhhhhccccccCCccc
Q 034546 1 MDKRRRKQAKTTTTTFYSEEV 21 (91)
Q Consensus 1 ~~~~~~~q~~~~~~~~~s~~v 21 (91)
|++|+.+|||+||.+||.+..
T Consensus 38 ~~~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 38 MCTKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp HTTSCHHHHHHHHHHHTTCSS
T ss_pred hCCCCHHHHHHHHHHHccCCC
Confidence 689999999999999998754
No 60
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.13 E-value=5.2e-05 Score=45.30 Aligned_cols=23 Identities=17% Similarity=0.053 Sum_probs=20.9
Q ss_pred CC--ccchhhhhccccccCCccccC
Q 034546 1 MD--KRRRKQAKTTTTTFYSEEVSS 23 (91)
Q Consensus 1 ~~--~~~~~q~~~~~~~~~s~~v~s 23 (91)
|+ +|+.+|||+||.+++.|.|..
T Consensus 40 ~~~~~Rt~~qcr~Rw~~~l~p~i~k 64 (69)
T 1ity_A 40 YKFNNRTSVMLKDRWRTMKKLKLIS 64 (69)
T ss_dssp SCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred cCcCCCCHHHHHHHHHHHcCCCCCC
Confidence 56 899999999999999998876
No 61
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.72 E-value=5.5e-05 Score=44.77 Aligned_cols=23 Identities=9% Similarity=0.023 Sum_probs=20.4
Q ss_pred CCccchhhhhccccccCCccccC
Q 034546 1 MDKRRRKQAKTTTTTFYSEEVSS 23 (91)
Q Consensus 1 ~~~~~~~q~~~~~~~~~s~~v~s 23 (91)
|++|+.+|||+||..++++.+..
T Consensus 37 ~~gRt~~qcr~Rw~~~l~~~~~~ 59 (66)
T 2din_A 37 IIGRTAAQCLEHYEFLLDKAAQR 59 (66)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHS
T ss_pred ccCcCHHHHHHHHHHHhChHhcC
Confidence 46899999999999999988765
No 62
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.70 E-value=0.00032 Score=45.82 Aligned_cols=47 Identities=15% Similarity=-0.090 Sum_probs=40.6
Q ss_pred CccchhhhhccccccCCccccCCCcccCCCCHHHHHH-HHHHHHHhCC
Q 034546 2 DKRRRKQAKTTTTTFYSEEVSSIEWEFINMSEQEEDL-IYRMYKLVGD 48 (91)
Q Consensus 2 ~~~~~~q~~~~~~~~~s~~v~s~~lkkg~wT~eED~l-Li~l~~~~G~ 48 (91)
++||..|||++|.+.+-....+|.+++|.-+++|-.. |+++|..+|+
T Consensus 48 ~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~~~~~~~~~ 95 (105)
T 2aje_A 48 DHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVLNAHGYWTQ 95 (105)
T ss_dssp TCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 6899999999999999777778888999888888777 8888887664
No 63
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=96.61 E-value=0.00021 Score=42.49 Aligned_cols=21 Identities=14% Similarity=-0.013 Sum_probs=17.7
Q ss_pred CCccchhhhhccccccCCccc
Q 034546 1 MDKRRRKQAKTTTTTFYSEEV 21 (91)
Q Consensus 1 ~~~~~~~q~~~~~~~~~s~~v 21 (91)
|.+|+.+|||+||.+++.+.+
T Consensus 43 ~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 43 FVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp CSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHhccCC
Confidence 458999999999998876654
No 64
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.59 E-value=0.0002 Score=43.20 Aligned_cols=23 Identities=13% Similarity=0.332 Sum_probs=20.3
Q ss_pred CCccchhhhhccccccCCccccC
Q 034546 1 MDKRRRKQAKTTTTTFYSEEVSS 23 (91)
Q Consensus 1 ~~~~~~~q~~~~~~~~~s~~v~s 23 (91)
|++|+.+|||+||..|+.+.+..
T Consensus 43 ~~~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 43 LGNRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp HSSSCHHHHHHHHHHHHGGGSTT
T ss_pred hCCCCHHHHHHHHHHHHHHHHhc
Confidence 67999999999999999887655
No 65
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=95.93 E-value=0.00081 Score=38.03 Aligned_cols=17 Identities=18% Similarity=0.057 Sum_probs=14.9
Q ss_pred CC--ccchhhhhccccccC
Q 034546 1 MD--KRRRKQAKTTTTTFY 17 (91)
Q Consensus 1 ~~--~~~~~q~~~~~~~~~ 17 (91)
|+ +|+.+|||+||.+++
T Consensus 32 ~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 32 YKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp SCCSSCCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 56 899999999998765
No 66
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=95.73 E-value=0.0031 Score=38.88 Aligned_cols=26 Identities=8% Similarity=-0.054 Sum_probs=20.3
Q ss_pred CCccchhhhhccccccCCccccCCCc
Q 034546 1 MDKRRRKQAKTTTTTFYSEEVSSIEW 26 (91)
Q Consensus 1 ~~~~~~~q~~~~~~~~~s~~v~s~~l 26 (91)
|++|+.+||++||..++-+++...+-
T Consensus 47 v~~RT~~qcr~r~~~~~i~d~~~~~~ 72 (79)
T 2yus_A 47 VGSRTQDECILHFLRLPIEDPYLENS 72 (79)
T ss_dssp HSSCCHHHHHHHHTTSCCCCSSCCCC
T ss_pred cCCCCHHHHHHHHHHhcccccccccC
Confidence 57899999999999996665555443
No 67
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.43 E-value=0.042 Score=41.59 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=41.0
Q ss_pred ccCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCCCCCHHHHHHHHHHHh
Q 034546 27 EFINMSEQEEDLIYRMYKLVG-DRWALIAGRIPGRKAEEIERFWIMRH 73 (91)
Q Consensus 27 kkg~wT~eED~lLi~l~~~~G-~kW~~Ia~~lpGRt~n~vKnrw~~~l 73 (91)
-++.||..+....+.+...+| +.|..||..++|.|...|+.+.....
T Consensus 109 GF~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw 156 (304)
T 1ofc_X 109 GFTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFW 156 (304)
T ss_dssp SCTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHH
T ss_pred hhcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 357899999999999999999 57999999999999999988765433
No 68
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.29 E-value=0.036 Score=41.94 Aligned_cols=49 Identities=20% Similarity=0.108 Sum_probs=41.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC----cHHHHh------------hhCCCCCHHHHHHHHHHHhhH
Q 034546 27 EFINMSEQEEDLIYRMYKLVGD----RWALIA------------GRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 27 kkg~wT~eED~lLi~l~~~~G~----kW~~Ia------------~~lpGRt~n~vKnrw~~~l~k 75 (91)
+..+||++||..||.+...+|- .|..|. =+|..||+.+|..|.+++++-
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~ 275 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITL 275 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 5569999999999999999994 599986 246789999999999988864
No 69
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.55 E-value=0.17 Score=30.19 Aligned_cols=44 Identities=7% Similarity=-0.037 Sum_probs=37.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCc---HHHHhhhC--CCCCHHHHHHHHHH
Q 034546 28 FINMSEQEEDLIYRMYKLVGDR---WALIAGRI--PGRKAEEIERFWIM 71 (91)
Q Consensus 28 kg~wT~eED~lLi~l~~~~G~k---W~~Ia~~l--pGRt~n~vKnrw~~ 71 (91)
+-.||+|+-+..++++..+|.. +..|-..| +|-|-.+|+.+.+.
T Consensus 7 r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4589999999999999999955 67887774 79999999987653
No 70
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=93.49 E-value=0.0068 Score=37.86 Aligned_cols=19 Identities=11% Similarity=0.125 Sum_probs=16.9
Q ss_pred CCccchhhhhccccccCCc
Q 034546 1 MDKRRRKQAKTTTTTFYSE 19 (91)
Q Consensus 1 ~~~~~~~q~~~~~~~~~s~ 19 (91)
|++|+..|||.||.+|+-.
T Consensus 45 l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 45 VGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 6899999999999988754
No 71
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=94.45 E-value=0.0025 Score=38.14 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=20.0
Q ss_pred CCccchhhhhccccccCCccccC
Q 034546 1 MDKRRRKQAKTTTTTFYSEEVSS 23 (91)
Q Consensus 1 ~~~~~~~q~~~~~~~~~s~~v~s 23 (91)
|++|+..|||.||..|+.+.+..
T Consensus 38 ~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 38 IGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp HSSSCHHHHHHHHHHHHHHHSCS
T ss_pred cCCCCHHHHHHHHHHHHHHHHhc
Confidence 68999999999999998876654
No 72
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.43 E-value=0.081 Score=36.71 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=40.2
Q ss_pred ccCCCCHHHHHHHHHHHHHhC---CcHHHHhhh--CCCCCHHHHHHHHHHHhh
Q 034546 27 EFINMSEQEEDLIYRMYKLVG---DRWALIAGR--IPGRKAEEIERFWIMRHG 74 (91)
Q Consensus 27 kkg~wT~eED~lLi~l~~~~G---~kW~~Ia~~--lpGRt~n~vKnrw~~~l~ 74 (91)
+..+||+.|-..++..+..|| .+|..|+.. |+++|...|+.++...+.
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~ 58 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHN 58 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 346999999999999999999 579999864 899999999987765543
No 73
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=94.37 E-value=0.0073 Score=48.34 Aligned_cols=42 Identities=12% Similarity=0.354 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHH
Q 034546 30 NMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIM 71 (91)
Q Consensus 30 ~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~ 71 (91)
.||++|..+..+.+..+|..|..|+.+||+|+-.+|-.+|+.
T Consensus 191 ~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yYY~ 232 (482)
T 2xag_B 191 EWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYS 232 (482)
T ss_dssp ------------------------------------------
T ss_pred ccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHhcc
Confidence 799999999999999999999999999999999999888764
No 74
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.70 E-value=0.09 Score=36.48 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=35.5
Q ss_pred cCCCCHHHHHHHHHHHHHhC-CcHHHHhhh--C----------CCC--CHHHHHHHHHHHhh
Q 034546 28 FINMSEQEEDLIYRMYKLVG-DRWALIAGR--I----------PGR--KAEEIERFWIMRHG 74 (91)
Q Consensus 28 kg~wT~eED~lLi~l~~~~G-~kW~~Ia~~--l----------pGR--t~n~vKnrw~~~l~ 74 (91)
...||.+||..||..+..+| +.|..|..- | +.+ ++..+..|-..+|+
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 35799999999999999999 899998762 1 133 45568888765443
No 75
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=92.87 E-value=0.17 Score=39.35 Aligned_cols=49 Identities=22% Similarity=0.190 Sum_probs=40.8
Q ss_pred ccCCCCHHHHHHHHHHHHHhC----CcHHHHhhh------------CCCCCHHHHHHHHHHHhhH
Q 034546 27 EFINMSEQEEDLIYRMYKLVG----DRWALIAGR------------IPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 27 kkg~wT~eED~lLi~l~~~~G----~kW~~Ia~~------------lpGRt~n~vKnrw~~~l~k 75 (91)
+...||++||..||.+...+| +.|..|-.. |..||+..|..|.+.+++-
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~ 291 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQC 291 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 345899999999999999998 459888443 5789999999999988864
No 76
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=91.31 E-value=0.2 Score=37.24 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHHHhC-CcHHHHhh
Q 034546 29 INMSEQEEDLIYRMYKLVG-DRWALIAG 55 (91)
Q Consensus 29 g~wT~eED~lLi~l~~~~G-~kW~~Ia~ 55 (91)
+.|+.+||..||..+-.|| +.|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 5799999999999999999 88999864
No 77
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=86.40 E-value=2.5 Score=31.23 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=42.0
Q ss_pred cCCCCHHHHHHHHHHHHHhC---CcHHHHhhh--CCCCCHHHHHHHHHHHhhH
Q 034546 28 FINMSEQEEDLIYRMYKLVG---DRWALIAGR--IPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 28 kg~wT~eED~lLi~l~~~~G---~kW~~Ia~~--lpGRt~n~vKnrw~~~l~k 75 (91)
+++||+-|-..|+..+..|| .+|..|+.- |+.++...|+..++..+..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 58999999999999999999 579998765 8999999999998865544
No 78
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=86.13 E-value=1.6 Score=24.15 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHh
Q 034546 30 NMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRH 73 (91)
Q Consensus 30 ~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l 73 (91)
..++.+-+ ++.++-..|-.+..||..| |-+...|+++.+..+
T Consensus 15 ~L~~~~r~-il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 15 DLTTDQRE-ALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARAR 56 (70)
T ss_dssp SSCHHHHH-HHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred hCCHHHHH-HHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 35555554 4555556788999999999 899999999766543
No 79
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=84.51 E-value=2 Score=24.42 Aligned_cols=45 Identities=16% Similarity=0.099 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHH---hCCcHHHHhhhCCCCCHHHHHHHHHHHhhH
Q 034546 30 NMSEQEEDLIYRMYKL---VGDRWALIAGRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 30 ~wT~eED~lLi~l~~~---~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~k 75 (91)
..++.|-++|...|.. -|-.+..||..| |-+...|+.+....+++
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRK 57 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3556666655544421 477899999999 89999999977655433
No 80
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=84.11 E-value=0.22 Score=31.38 Aligned_cols=17 Identities=12% Similarity=0.220 Sum_probs=14.9
Q ss_pred CCccchhhhhccccccC
Q 034546 1 MDKRRRKQAKTTTTTFY 17 (91)
Q Consensus 1 ~~~~~~~q~~~~~~~~~ 17 (91)
|++|+.+||+.||...+
T Consensus 41 vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 41 VEGRTPEEVKKHYEILV 57 (93)
T ss_dssp STTCCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 68999999999998763
No 81
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=81.08 E-value=2.2 Score=23.89 Aligned_cols=43 Identities=7% Similarity=0.060 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHH---HhCCcHHHHhhhCCCCCHHHHHHHHHHHhh
Q 034546 31 MSEQEEDLIYRMYK---LVGDRWALIAGRIPGRKAEEIERFWIMRHG 74 (91)
Q Consensus 31 wT~eED~lLi~l~~---~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~ 74 (91)
.++.|-++|...|. .-|-.+..||..| |-+...|+.+....++
T Consensus 6 L~~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALR 51 (68)
T ss_dssp CCHHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 45666665554442 2477899999999 9999999998765443
No 82
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=80.51 E-value=7 Score=24.48 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHH
Q 034546 30 NMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFW 69 (91)
Q Consensus 30 ~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw 69 (91)
.=++.-+..|..+...+|..|..+|..| |=++.+|.+.=
T Consensus 12 ~~~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~I~ 50 (111)
T 2yqf_A 12 SGTEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINRIR 50 (111)
T ss_dssp SCSHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHHHH
T ss_pred chHhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHHHH
Confidence 4477778888888899999999999999 89998887743
No 83
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=78.64 E-value=4 Score=24.18 Aligned_cols=38 Identities=13% Similarity=-0.010 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhh
Q 034546 36 EDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHG 74 (91)
Q Consensus 36 D~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~ 74 (91)
+..++.++-..|-.-..||..| |-+...|+.+.+..++
T Consensus 42 ~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~ 79 (92)
T 3hug_A 42 HRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVR 79 (92)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 3444556556688899999999 8999999998765443
No 84
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=78.41 E-value=6.4 Score=23.70 Aligned_cols=44 Identities=14% Similarity=-0.014 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhhH
Q 034546 29 INMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 29 g~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~k 75 (91)
..+|+.|-++|..+. -|-.-..||..| |-+...|+++....+++
T Consensus 28 ~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 28 DVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp -CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 478998888776554 688899999999 89999999998876655
No 85
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=74.02 E-value=9.2 Score=21.44 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhhH
Q 034546 30 NMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 30 ~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~k 75 (91)
.+|+.|-++|. ++ ..|-.-..||..| |-+...|+.+....+++
T Consensus 16 ~L~~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 16 TLSERERQVLS-AV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HHCHHHHHHHH-HH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 35666666654 45 5688899999999 88999999987655544
No 86
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=73.72 E-value=7.9 Score=24.97 Aligned_cols=36 Identities=11% Similarity=0.080 Sum_probs=26.6
Q ss_pred HHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhh
Q 034546 38 LIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHG 74 (91)
Q Consensus 38 lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~ 74 (91)
.++.++-..|-....||..| |-+...|+++.+..++
T Consensus 147 ~vl~l~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~ 182 (194)
T 1or7_A 147 MAITLRELDGLSYEEIAAIM-DCPVGTVRSRIFRARE 182 (194)
T ss_dssp HHHHHHHTTCCCHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred HHhHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 34455555677889999999 8999999998765443
No 87
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=67.86 E-value=11 Score=22.09 Aligned_cols=42 Identities=12% Similarity=0.029 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHH----hCCcHHHHhhhCCCCCHHHHHHHHHHHhh
Q 034546 31 MSEQEEDLIYRMYKL----VGDRWALIAGRIPGRKAEEIERFWIMRHG 74 (91)
Q Consensus 31 wT~eED~lLi~l~~~----~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~ 74 (91)
-++.|-++|. ++-. -|-.+..||..| |-+...|+.+-...++
T Consensus 19 L~~~er~vl~-l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 19 LSPREAMVLR-MRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALR 64 (87)
T ss_dssp SCHHHHHHHH-HHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 4555555554 4433 467899999999 8999999997655443
No 88
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=67.27 E-value=8.4 Score=24.50 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=25.1
Q ss_pred HHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHH
Q 034546 37 DLIYRMYKLVGDRWALIAGRIPGRKAEEIERF 68 (91)
Q Consensus 37 ~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnr 68 (91)
..|..+...+|..|..+|..| |=++.+|.+.
T Consensus 14 ~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~I 44 (118)
T 2of5_H 14 SNLLSVAGRLGLDWPAVALHL-GVSYREVQRI 44 (118)
T ss_dssp HHHHHHHHTCCTTHHHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHc-CCCHHHHHHH
Confidence 345556688999999999999 8888887764
No 89
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=66.83 E-value=15 Score=22.90 Aligned_cols=42 Identities=7% Similarity=0.080 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhh
Q 034546 31 MSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHG 74 (91)
Q Consensus 31 wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~ 74 (91)
.++.+-+ ++.++-..|-....||..| |-+...|+.+.+...+
T Consensus 26 L~~~~r~-vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~ 67 (113)
T 1xsv_A 26 LTNKQRN-YLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGD 67 (113)
T ss_dssp SCHHHHH-HHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 4555544 4456556788999999999 8999999998765443
No 90
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=66.75 E-value=14 Score=21.45 Aligned_cols=43 Identities=14% Similarity=0.133 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhhH
Q 034546 30 NMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 30 ~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~k 75 (91)
.+|+.|-++|.. + ..|-.-..||..| |-+...|+++-...+++
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 578888777665 4 5688899999999 89999999987655444
No 91
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=66.68 E-value=4.5 Score=26.04 Aligned_cols=35 Identities=9% Similarity=-0.084 Sum_probs=26.5
Q ss_pred HHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhh
Q 034546 39 IYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHG 74 (91)
Q Consensus 39 Li~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~ 74 (91)
++.++-..|-....||..| |-+...|+++.+..++
T Consensus 143 vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~ 177 (184)
T 2q1z_A 143 LIERAFFGDLTHRELAAET-GLPLGTIKSRIRLALD 177 (184)
T ss_dssp HHHHHHHSCCSSCCSTTTC-CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 4445555677888999999 8999999998765443
No 92
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=65.88 E-value=11 Score=23.55 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHH
Q 034546 37 DLIYRMYKLVGDRWALIAGRIPGRKAEEIERF 68 (91)
Q Consensus 37 ~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnr 68 (91)
..|-.+...+|..|..+|..| |=++..|.+.
T Consensus 19 ~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~i 49 (110)
T 1wxp_A 19 EQIEVFANKLGEQWKILAPYL-EMKDSEIRQI 49 (110)
T ss_dssp HHHHHHHHHHTTTHHHHTTTT-TCCHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHh-CCCHHHHHHH
Confidence 344456688899999999999 8999988773
No 93
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=65.61 E-value=14 Score=24.41 Aligned_cols=34 Identities=3% Similarity=-0.081 Sum_probs=25.1
Q ss_pred HHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHh
Q 034546 39 IYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRH 73 (91)
Q Consensus 39 Li~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l 73 (91)
|+.++-..|-....||..| |-+...|+.+.+..+
T Consensus 195 vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~ 228 (239)
T 1rp3_A 195 VIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKAL 228 (239)
T ss_dssp HHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 3444444577889999999 899999988765443
No 94
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=64.62 E-value=20 Score=21.35 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhhH
Q 034546 29 INMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 29 g~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~k 75 (91)
...|+.|-++|.. + ..|-.-..||..| |-+...|+++-...+++
T Consensus 26 ~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 26 SGLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp -CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3578888777665 4 6788899999999 89999999987655543
No 95
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=64.03 E-value=12 Score=23.10 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHh
Q 034546 31 MSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRH 73 (91)
Q Consensus 31 wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l 73 (91)
.++.+-.+|. +-..|-....||..| |-+...|+++.+..+
T Consensus 110 L~~~~r~v~~--~~~~g~s~~EIA~~l-gis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 110 FSKFEKEVLT--YLIRGYSYREIATIL-SKNLKSIDNTIQRIR 149 (164)
T ss_dssp SCHHHHHHHH--HHTTTCCHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHH--HHHcCCCHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 3344444444 334567788899988 889999988776543
No 96
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=63.75 E-value=16 Score=19.97 Aligned_cols=44 Identities=7% Similarity=0.003 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhhH
Q 034546 29 INMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 29 g~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~k 75 (91)
..+|+.|-++|.. + ..|-.-..||..| |-+...|+.+......+
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4678888777655 4 5677899999999 88999999887665443
No 97
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=63.42 E-value=13 Score=23.78 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=24.2
Q ss_pred HHHHHHHhCCcHHHHhhhCCCCCHHHHHHHH
Q 034546 39 IYRMYKLVGDRWALIAGRIPGRKAEEIERFW 69 (91)
Q Consensus 39 Li~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw 69 (91)
|-.+...+|..|..+|..| |=++.+|...=
T Consensus 27 l~~Ia~~LG~~Wk~LAR~L-Glse~dId~I~ 56 (115)
T 2o71_A 27 INQLAQRLGPEWEPMVLSL-GLSQTDIYRCK 56 (115)
T ss_dssp HHHHHHHCCTTHHHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHc-CCCHHHHHHHH
Confidence 4445688999999999999 88888877643
No 98
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=62.81 E-value=12 Score=23.90 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=24.3
Q ss_pred HHHHHHHhCCcHHHHhhhCCCCCHHHHHHHH
Q 034546 39 IYRMYKLVGDRWALIAGRIPGRKAEEIERFW 69 (91)
Q Consensus 39 Li~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw 69 (91)
|-.+...+|..|..+|..| |=++++|...=
T Consensus 27 l~~Ia~~lG~~Wk~LAR~L-Glse~dId~I~ 56 (114)
T 2of5_A 27 INQLAQRLGPEWEPMVLSL-GLSQTDIYRCK 56 (114)
T ss_dssp HHHHHHTCCSTHHHHHHTT-TCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHc-CCCHHHHHHHH
Confidence 4445688999999999999 88998887643
No 99
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=61.95 E-value=13 Score=18.23 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHH
Q 034546 30 NMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFW 69 (91)
Q Consensus 30 ~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw 69 (91)
..++++-..|+.++. -|-....||..| |-+...|.++.
T Consensus 5 ~l~~~~~~~i~~~~~-~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMKL-LNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHHH-TTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCHHHHHHHH-CcCHHHHHHHH
Confidence 467777777777764 577889999998 78888887754
No 100
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=61.33 E-value=25 Score=21.46 Aligned_cols=44 Identities=16% Similarity=0.097 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhhH
Q 034546 29 INMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 29 g~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~k 75 (91)
...|+.|-++|..+ . -|-.-.+||..| |-+...|+++-...+++
T Consensus 33 ~~Lt~re~~Vl~l~-~-~G~s~~EIA~~L-~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 33 KRLSPKESEVLRLF-A-EGFLVTEIAKKL-NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSCCHHHHHHHHHH-H-HTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH-H-cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 57899998887553 3 588899999999 88999999987766554
No 101
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=60.66 E-value=24 Score=27.23 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=35.1
Q ss_pred cCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCC-CCCHHHHHHHHH
Q 034546 28 FINMSEQEEDLIYRMYKLVG-DRWALIAGRIP-GRKAEEIERFWI 70 (91)
Q Consensus 28 kg~wT~eED~lLi~l~~~~G-~kW~~Ia~~lp-GRt~n~vKnrw~ 70 (91)
++.||.-+=...|.+...|| +.-..||..|. |.|...|+.+..
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~ 167 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAK 167 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHH
Confidence 45777777778888888888 45899999997 999999997644
No 102
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=57.73 E-value=23 Score=22.09 Aligned_cols=43 Identities=14% Similarity=0.129 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhh
Q 034546 30 NMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHG 74 (91)
Q Consensus 30 ~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~ 74 (91)
.+++.+-+++ .++-..|-.-..||..| |-+...|+.+.+....
T Consensus 22 ~L~~~~r~vl-~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~ 64 (113)
T 1s7o_A 22 LLTDKQMNYI-ELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEK 64 (113)
T ss_dssp GSCHHHHHHH-HHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHH-HHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 4566665554 45555788999999999 9999999998775443
No 103
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=56.42 E-value=12 Score=22.66 Aligned_cols=36 Identities=11% Similarity=0.141 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHH
Q 034546 33 EQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFW 69 (91)
Q Consensus 33 ~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw 69 (91)
..-+..+..+...+|..|..+|..| |=++++|...=
T Consensus 11 ~~l~~~~~~ia~~lg~~Wk~Lar~L-g~~~~~I~~I~ 46 (99)
T 1fad_A 11 AYLQVAFDIVCDNVGRDWKRLAREL-KVSEAKMDGIE 46 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHHHH
Confidence 3344556677788999999999999 88888887743
No 104
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=53.89 E-value=21 Score=20.85 Aligned_cols=43 Identities=12% Similarity=0.036 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhhH
Q 034546 30 NMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 30 ~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~k 75 (91)
..|+.|-++|.. + ..|-.-..||..| |-+...|+++-...+++
T Consensus 29 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEILLL-I-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHHHH-H-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 578888777654 4 5688889999999 89999999987655544
No 105
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=53.65 E-value=33 Score=21.07 Aligned_cols=37 Identities=16% Similarity=0.295 Sum_probs=24.5
Q ss_pred HHHHHHHhC--------CcHHHHhhhCCCCC----HHHHHHHHHHHhhH
Q 034546 39 IYRMYKLVG--------DRWALIAGRIPGRK----AEEIERFWIMRHGQ 75 (91)
Q Consensus 39 Li~l~~~~G--------~kW~~Ia~~lpGRt----~n~vKnrw~~~l~k 75 (91)
|...+...| +.|..||..|.--. +..++..|..+|-.
T Consensus 49 Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 49 LHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 444555555 46999999983322 45788888777644
No 106
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=53.09 E-value=15 Score=23.17 Aligned_cols=38 Identities=16% Similarity=0.420 Sum_probs=27.0
Q ss_pred HHHHHHHHhC--------CcHHHHhhhCCCCCHHHHHHHHHHHhhH
Q 034546 38 LIYRMYKLVG--------DRWALIAGRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 38 lLi~l~~~~G--------~kW~~Ia~~lpGRt~n~vKnrw~~~l~k 75 (91)
.|..++...| +.|..||..|.--.+..++..|..+|-.
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 3445555555 4699999997444478999999887755
No 107
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=51.66 E-value=25 Score=18.53 Aligned_cols=37 Identities=8% Similarity=0.038 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhhH
Q 034546 37 DLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 37 ~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~k 75 (91)
..++.++ ..|-.-..||..| |-+...|+++.....++
T Consensus 4 ~~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 4 RQVLKLI-DEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3444554 4577789999999 89999999987765544
No 108
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=50.42 E-value=32 Score=21.71 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=25.8
Q ss_pred HHHHHHHHhC--------CcHHHHhhhCCCC--C--HHHHHHHHHHHhhH
Q 034546 38 LIYRMYKLVG--------DRWALIAGRIPGR--K--AEEIERFWIMRHGQ 75 (91)
Q Consensus 38 lLi~l~~~~G--------~kW~~Ia~~lpGR--t--~n~vKnrw~~~l~k 75 (91)
.|..++...| +.|..||..|.-- + +..++..|..+|-.
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 3455555555 4699999998322 2 45799998887755
No 109
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=44.95 E-value=50 Score=19.96 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHH
Q 034546 29 INMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWI 70 (91)
Q Consensus 29 g~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~ 70 (91)
..+|.++-..|+.++. -|..-..||..| |.+...|.+...
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~s~~~ia~~l-gis~~Tv~r~~~ 44 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNVSLHEMSRKI-SRSRHCIRVYLK 44 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTCCHHHHHHHH-TCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHH-cCCCHHHHHHHH-CcCHHHHHHHHH
Confidence 3688888888888884 587889999998 888888876543
No 110
>2bl8_A Enterocine A immunity protein; enterocin A, ORF2 protein, bacterial protein; HET: FLC; 1.6A {Enterococcus faecium} SCOP: a.29.8.2 PDB: 2bl7_A
Probab=44.77 E-value=15 Score=23.66 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=15.9
Q ss_pred ccCCCCHHHHHHHHHHHHH
Q 034546 27 EFINMSEQEEDLIYRMYKL 45 (91)
Q Consensus 27 kkg~wT~eED~lLi~l~~~ 45 (91)
++-+||.+||++|+.|-..
T Consensus 65 ~~l~ft~~qe~li~~L~~i 83 (103)
T 2bl8_A 65 NKIRFTEYQEELIRNLSEI 83 (103)
T ss_dssp TTCCCCHHHHHHHHHHHHH
T ss_pred ccCCCChHHHHHHHHHHHH
Confidence 5669999999999988653
No 111
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=44.37 E-value=55 Score=20.34 Aligned_cols=40 Identities=10% Similarity=0.035 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHH
Q 034546 29 INMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWI 70 (91)
Q Consensus 29 g~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~ 70 (91)
..+|.++-..|+.++. -|..-..||..| |.+...|.+...
T Consensus 31 ~~~s~e~r~~iv~~~~-~G~s~~~iA~~l-gis~~TV~rw~~ 70 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QGVRPCDISRQL-RVSHGCVSKILG 70 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TTCCHHHHHHHH-TCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCCCHHHHHHHH-CcCHHHHHHHHH
Confidence 4789999999999985 587889999998 788888876543
No 112
>2ib1_A Death domain containing membrane protein nradd; apoptosis, NOGO, FADD; NMR {Mus musculus}
Probab=44.02 E-value=7.8 Score=23.82 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHH
Q 034546 33 EQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERF 68 (91)
Q Consensus 33 ~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnr 68 (91)
.+|-+.|+.. ...|..|...|..| |=++..|..+
T Consensus 5 r~~v~~ll~~-~~~G~dW~~LA~~L-g~~~~~I~~i 38 (91)
T 2ib1_A 5 QEEVQRLLMM-GEPAKGWQELAGHL-GYQAEAVETM 38 (91)
T ss_dssp HHTTHHHHTT-TCCSSTHHHHHHHH-TCCHHHHHHH
T ss_pred HHHHHHHhcC-CCCCccHHHHHHHc-CCCHHHHHHH
Confidence 4555666663 55689999999999 8888888775
No 113
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=41.40 E-value=45 Score=23.03 Aligned_cols=44 Identities=16% Similarity=0.065 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhhH
Q 034546 29 INMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 29 g~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~k 75 (91)
...++.|-++|.- + .-|-.-.+||..| |-+.+.|+.+-+..+++
T Consensus 196 ~~L~~~erevl~L-~-~~G~s~~EIA~~L-~iS~~TVk~~l~ra~~k 239 (258)
T 3clo_A 196 NILSEREKEILRC-I-RKGLSSKEIAATL-YISVNTVNRHRQNILEK 239 (258)
T ss_dssp TSSCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4677777776654 5 4788899999999 99999999987655443
No 114
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=40.22 E-value=55 Score=19.14 Aligned_cols=39 Identities=13% Similarity=0.064 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHH
Q 034546 29 INMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFW 69 (91)
Q Consensus 29 g~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw 69 (91)
..+|.++-..|+.++. -|..-..||..| |.+...|....
T Consensus 16 ~~~s~~~r~~i~~~~~-~g~s~~~ia~~l-gis~~Tv~~w~ 54 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAA-DGIRPCVISRQL-RVSHGCVSKIL 54 (128)
T ss_dssp SCCCHHHHHHHHHHHH-TTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHH-cCCCHHHHHHHH-CcCHHHHHHHH
Confidence 3789999999999885 677888999998 78887776644
No 115
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=39.85 E-value=16 Score=23.33 Aligned_cols=37 Identities=14% Similarity=-0.078 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHH
Q 034546 35 EEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMR 72 (91)
Q Consensus 35 ED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~ 72 (91)
++..++.++-..|-.-.+||..| |-+.+.|+++-...
T Consensus 97 ~~r~vl~L~~~~g~s~~EIA~~l-gis~~tV~~~l~ra 133 (157)
T 2lfw_A 97 LSRQALLLTAMEGFSPEDAAYLI-EVDTSEVETLVTEA 133 (157)
T ss_dssp THHHHHTTTSSSCCCHHHHHHTT-TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHH
Confidence 34445556666688899999999 89999999986543
No 116
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=39.61 E-value=54 Score=21.09 Aligned_cols=49 Identities=14% Similarity=0.000 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHH-----HhCCcHHHHhhhCCCCCHHHHHHHHHHHhhHHHHH
Q 034546 30 NMSEQEEDLIYRMYK-----LVGDRWALIAGRIPGRKAEEIERFWIMRHGQAFAD 79 (91)
Q Consensus 30 ~wT~eED~lLi~l~~-----~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~k~~~~ 79 (91)
.-|+.|=-+|+.++. ..++.-..||..| |-+...|-..-..++.+.+..
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~-~~s~~~v~~~L~~L~~KGlI~ 82 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPNQLQEGM-SISVEECTNRLRMFIQKGFLF 82 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTS-SSCHHHHHHHHHHHHHHTSCE
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEE
Confidence 567788888888888 4667899999999 899999999888888776554
No 117
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=39.36 E-value=63 Score=20.47 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=20.2
Q ss_pred CcHHHHhhhCCCCC----HHHHHHHHHHHhhH
Q 034546 48 DRWALIAGRIPGRK----AEEIERFWIMRHGQ 75 (91)
Q Consensus 48 ~kW~~Ia~~lpGRt----~n~vKnrw~~~l~k 75 (91)
+.|..||..|.--+ +..+++.|..+|-.
T Consensus 73 ~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 73 KKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp TCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 46999999983322 45788888877755
No 118
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=38.58 E-value=68 Score=20.36 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=26.3
Q ss_pred HHHHHHHHhC--------CcHHHHhhhC--CCC---CHHHHHHHHHHHhhH
Q 034546 38 LIYRMYKLVG--------DRWALIAGRI--PGR---KAEEIERFWIMRHGQ 75 (91)
Q Consensus 38 lLi~l~~~~G--------~kW~~Ia~~l--pGR---t~n~vKnrw~~~l~k 75 (91)
.|..++...| +.|..||..| |.. .+..++..|..+|-.
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 3445555556 4699999997 332 256799999887765
No 119
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=38.23 E-value=67 Score=19.57 Aligned_cols=44 Identities=7% Similarity=0.114 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHH---hCCcHHHHhhhCCCCCHHHHHHHHHHHhhH
Q 034546 31 MSEQEEDLIYRMYKL---VGDRWALIAGRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 31 wT~eED~lLi~l~~~---~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~k 75 (91)
-++.|-++|.-.|.. -|-....||..| |-+...|+++-...+++
T Consensus 20 Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~l-giS~~tVr~~~~rAlkk 66 (99)
T 3t72_q 20 LTAREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 66 (99)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 345555544433322 246799999999 89999999987655544
No 120
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=38.10 E-value=67 Score=20.36 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=24.7
Q ss_pred HHHHHHHHhC--------CcHHHHhhhCCCC--C--HHHHHHHHHHHhhH
Q 034546 38 LIYRMYKLVG--------DRWALIAGRIPGR--K--AEEIERFWIMRHGQ 75 (91)
Q Consensus 38 lLi~l~~~~G--------~kW~~Ia~~lpGR--t--~n~vKnrw~~~l~k 75 (91)
.|..++...| +.|..||..|.-- + +..++.+|..+|-.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 3445555555 4699999998322 2 35788888877654
No 121
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=37.99 E-value=19 Score=23.20 Aligned_cols=27 Identities=15% Similarity=0.373 Sum_probs=21.4
Q ss_pred cHHHHhhhCCCCCHHHHHHHHHHHhhH
Q 034546 49 RWALIAGRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 49 kW~~Ia~~lpGRt~n~vKnrw~~~l~k 75 (91)
.|..||..|.--.+..+++.|..+|-.
T Consensus 71 ~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 71 QWSMVAQRLQISDYQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 599999997444488999999887754
No 122
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=36.43 E-value=80 Score=21.50 Aligned_cols=44 Identities=9% Similarity=0.194 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhhH
Q 034546 29 INMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 29 g~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~k 75 (91)
...|+.|-++|.-+ .-|-.-.+||..| |-+...|+++-....+|
T Consensus 174 ~~Lt~re~~vl~~~--~~G~s~~eIa~~l-~is~~tV~~~~~~~~~k 217 (237)
T 3szt_A 174 VRLTARETEMLKWT--AVGKTYGEIGLIL-SIDQRTVKFHIVNAMRK 217 (237)
T ss_dssp CCCCHHHHHHHHHH--HTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH--HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 57899998877654 3688889999999 99999999988776665
No 123
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=35.67 E-value=86 Score=21.12 Aligned_cols=44 Identities=14% Similarity=0.093 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhhH
Q 034546 29 INMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 29 g~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~k 75 (91)
...|+.|-++|.- + .-|-.-.+||..| |-+...|+++-....+|
T Consensus 174 ~~Lt~~e~~vl~~-~-~~g~s~~eIa~~l-~is~~tV~~~~~~~~~k 217 (236)
T 2q0o_A 174 QMLSPREMLCLVW-A-SKGKTASVTANLT-GINARTVQHYLDKARAK 217 (236)
T ss_dssp GSCCHHHHHHHHH-H-HTTCCHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4689999987754 4 3688899999999 99999999987766555
No 124
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=35.10 E-value=8 Score=25.53 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHH
Q 034546 39 IYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMR 72 (91)
Q Consensus 39 Li~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~ 72 (91)
|+.++-..|-....||..| |-+...|+.+.+..
T Consensus 206 vl~l~~~~g~s~~EIA~~l-gis~~tV~~~~~ra 238 (243)
T 1l0o_C 206 IVYLRYYKDQTQSEVASRL-GISQVQMSRLEKKI 238 (243)
T ss_dssp ----------------------------------
T ss_pred HHHHHHhcCCCHHHHHHHH-CcCHHHHHHHHHHH
Confidence 4445444566778888888 77778887765443
No 125
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=34.89 E-value=29 Score=20.79 Aligned_cols=30 Identities=33% Similarity=0.771 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHH
Q 034546 33 EQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERF 68 (91)
Q Consensus 33 ~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnr 68 (91)
.+|-..++. |+.|...|..| |=+...|.+.
T Consensus 12 r~~l~~lL~-----g~dW~~LA~~L-g~~~~~I~~~ 41 (85)
T 1ngr_A 12 REEVEKLLN-----GDTWRHLAGEL-GYQPEHIDSF 41 (85)
T ss_dssp THHHHHHSC-----TTHHHHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHhC-----cCCHHHHHHHc-CCCHHHHHHH
Confidence 445555554 99999999999 7788777764
No 126
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=34.88 E-value=58 Score=20.85 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=22.4
Q ss_pred HHHHHhCCcHHHHhhhCCCCCHHHHHHHHH
Q 034546 41 RMYKLVGDRWALIAGRIPGRKAEEIERFWI 70 (91)
Q Consensus 41 ~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~ 70 (91)
.+...+|..|..+|..| |=++++|...=.
T Consensus 11 ~Ia~~lG~~Wk~LAR~L-Glse~dId~Ie~ 39 (122)
T 3ezq_B 11 VICDNVGKDWRRLARQL-KVSDTKIDSIED 39 (122)
T ss_dssp HHHTTCCTTHHHHHHHT-TCCHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHh-CCCHHHHHHHHH
Confidence 44456899999999999 888888776533
No 127
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=32.09 E-value=91 Score=20.34 Aligned_cols=38 Identities=16% Similarity=0.280 Sum_probs=25.6
Q ss_pred HHHHHHHHhC--------CcHHHHhhhC--CCC---CHHHHHHHHHHHhhH
Q 034546 38 LIYRMYKLVG--------DRWALIAGRI--PGR---KAEEIERFWIMRHGQ 75 (91)
Q Consensus 38 lLi~l~~~~G--------~kW~~Ia~~l--pGR---t~n~vKnrw~~~l~k 75 (91)
.|..++...| +.|..||..| |.. .+..++..|..+|-.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 3445555555 4699999997 332 256799999887755
No 128
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=31.88 E-value=26 Score=24.29 Aligned_cols=18 Identities=0% Similarity=-0.197 Sum_probs=14.6
Q ss_pred CCCcccCCCCHHHHHHHH
Q 034546 23 SIEWEFINMSEQEEDLIY 40 (91)
Q Consensus 23 s~~lkkg~wT~eED~lLi 40 (91)
-|+-..|-||.++|+.|.
T Consensus 109 iP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 109 PPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp SCTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCCChhhHHHHH
Confidence 355677999999999875
No 129
>2gf5_A FADD protein; death domain, death effector domain, apoptosis, death- inducing signaling complex; NMR {Homo sapiens} SCOP: a.77.1.2 a.77.1.4
Probab=31.48 E-value=61 Score=21.88 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHH
Q 034546 34 QEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFW 69 (91)
Q Consensus 34 eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw 69 (91)
+-+..+-.+...+|..|..+|..| |=++++|...=
T Consensus 96 d~~~~~~~ia~~lg~~Wk~Lar~L-gl~~~~I~~I~ 130 (191)
T 2gf5_A 96 DLCAAFNVICDNVGKDWRRLARQL-KVSDTKIDSIE 130 (191)
T ss_dssp HHHHHHHHHHHSCCTTHHHHHHHT-TCCHHHHHHHH
T ss_pred cHHHHHHHHHHccchhHHHHHHHc-CCCHHHHHHHH
Confidence 345556667778999999999999 88888887643
No 130
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=31.04 E-value=89 Score=19.99 Aligned_cols=38 Identities=13% Similarity=0.366 Sum_probs=26.3
Q ss_pred HHHHHHHHhC--------CcHHHHhhhC--CCCC---HHHHHHHHHHHhhH
Q 034546 38 LIYRMYKLVG--------DRWALIAGRI--PGRK---AEEIERFWIMRHGQ 75 (91)
Q Consensus 38 lLi~l~~~~G--------~kW~~Ia~~l--pGRt---~n~vKnrw~~~l~k 75 (91)
.|..++...| +.|..||..| |.-. ...++++|..+|-.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 4555556666 4699999998 4322 46799999877655
No 131
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=30.56 E-value=1.1e+02 Score=20.57 Aligned_cols=44 Identities=16% Similarity=0.060 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhhH
Q 034546 29 INMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 29 g~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~k 75 (91)
...|+.|-++|.- + .-|-.-.+||..| |-+...|+++-....+|
T Consensus 172 ~~Lt~~e~~vl~~-~-~~g~s~~eIa~~l-~is~~tV~~~~~~~~~k 215 (234)
T 1l3l_A 172 AWLDPKEATYLRW-I-AVGKTMEEIADVE-GVKYNSVRVKLREAMKR 215 (234)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4699999988654 4 3688889999999 99999999987766555
No 132
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=29.67 E-value=80 Score=19.88 Aligned_cols=38 Identities=13% Similarity=0.099 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHH
Q 034546 30 NMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFW 69 (91)
Q Consensus 30 ~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw 69 (91)
.+|.++-..|+.++. -|-....||..| |.+...|.+..
T Consensus 25 ~~s~e~r~~ii~l~~-~G~s~~~IA~~l-gis~~TV~rwl 62 (159)
T 2k27_A 25 PLPEVVRQRIVDLAH-QGVRPCDISRQL-RVSHGCVSKIL 62 (159)
T ss_dssp SSCHHHHHHHHHHHH-HTCCHHHHHHHH-TCCSHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCHHHHHHHH-CcCHHHHHHHH
Confidence 688999889998885 688888999998 77777777643
No 133
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=28.55 E-value=1.2e+02 Score=21.06 Aligned_cols=44 Identities=16% Similarity=0.065 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHHhhH
Q 034546 29 INMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 29 g~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~l~k 75 (91)
...|+.|-++|.-+ .-|-.-.+||..| |-+.+.|+.+-....+|
T Consensus 196 ~~Lt~re~~vl~~~--~~G~s~~eIA~~l-~is~~TV~~~~~~~~~k 239 (265)
T 3qp6_A 196 MPLSQREYDIFHWM--SRGKTNWEIATIL-NISERTVKFHVANVIRK 239 (265)
T ss_dssp CCCCHHHHHHHHHH--HTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH--HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 46899998887655 3688889999999 99999999988776655
No 134
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=26.59 E-value=57 Score=20.49 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=27.3
Q ss_pred ccccccCCccccCCCcccCCCCHHHHHHHHHHHHHhCCcHH
Q 034546 11 TTTTTFYSEEVSSIEWEFINMSEQEEDLIYRMYKLVGDRWA 51 (91)
Q Consensus 11 ~~~~~~~s~~v~s~~lkkg~wT~eED~lLi~l~~~~G~kW~ 51 (91)
+-+..|.-+-.....+....|+.+|..-|..+....|+.-+
T Consensus 12 ~~~~~~~~p~F~g~~Ic~sGf~~~er~~l~~~i~~~GG~~~ 52 (112)
T 3l46_A 12 ENLYFQGVPPFQDCILSFLGFSDEEKTNMEEMTEMQGGKYL 52 (112)
T ss_dssp ------CCCTTTTCEECEESCCHHHHHHHHHHHHHTTCEEC
T ss_pred ccccccCCCccCCeEEEEeCCCHHHHHHHHHHHHHcCCEEC
Confidence 34445555555555555567999999999999999998754
No 135
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=25.94 E-value=59 Score=19.92 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=25.1
Q ss_pred HHHHHHHHhC--------CcHHHHhhhCC--CC---CHHHHHHHHHHHhhH
Q 034546 38 LIYRMYKLVG--------DRWALIAGRIP--GR---KAEEIERFWIMRHGQ 75 (91)
Q Consensus 38 lLi~l~~~~G--------~kW~~Ia~~lp--GR---t~n~vKnrw~~~l~k 75 (91)
.|..++...| +.|..||..|. .. .+..+++.|..+|-.
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 3445555555 46999999973 21 235799999887755
No 136
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=25.79 E-value=43 Score=16.53 Aligned_cols=10 Identities=20% Similarity=0.245 Sum_probs=7.6
Q ss_pred CCHHHHHHHH
Q 034546 31 MSEQEEDLIY 40 (91)
Q Consensus 31 wT~eED~lLi 40 (91)
||++|.+.++
T Consensus 1 ~s~~eRq~~L 10 (28)
T 3h8k_B 1 WSADERQRML 10 (28)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 7888887765
No 137
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=24.85 E-value=81 Score=18.89 Aligned_cols=44 Identities=30% Similarity=0.340 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHHhCCc-HHHHhhhCCCCCHHHHHHHHHHHh
Q 034546 30 NMSEQEEDLIYRMYKLVGDR-WALIAGRIPGRKAEEIERFWIMRH 73 (91)
Q Consensus 30 ~wT~eED~lLi~l~~~~G~k-W~~Ia~~lpGRt~n~vKnrw~~~l 73 (91)
.+|+.-++.|+.+-...|+. =-.||+.|.=+|..+|-..-+..-
T Consensus 6 qls~~~ee~I~~fL~~~Gp~~AL~IAK~LGlktAK~VNp~LY~m~ 50 (72)
T 3eyi_A 6 QFSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYRMK 50 (72)
T ss_dssp CCSSHHHHHHHHHHHHHCSEEHHHHHHHTTCCSGGGTHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHcCCchHHHHHHHhCcchhhhcCHHHHHHH
Confidence 45666566677777777864 667999999999998877655443
No 138
>4d8o_A Ankyrin-2; ZU5, UPA, death domain, supramodule, protein binding; 2.20A {Homo sapiens}
Probab=24.64 E-value=65 Score=26.24 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHH
Q 034546 36 EDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFW 69 (91)
Q Consensus 36 D~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw 69 (91)
|..|..+-..+|..|..+|..| |=++.+|.+.=
T Consensus 498 d~~L~~Ia~~LG~DWk~LAr~L-G~s~~dId~I~ 530 (581)
T 4d8o_A 498 EERLAYIADHLGFSWTELAREL-DFTEEQIHQIR 530 (581)
T ss_dssp CHHHHHHHHHHTTHHHHHHHHT-TCCHHHHHHHH
T ss_pred hhHHHHHHHhcccCHHHHHHHc-CCCHHHHHHHH
Confidence 4566677789999999999999 88888877753
No 139
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=24.45 E-value=36 Score=20.43 Aligned_cols=27 Identities=7% Similarity=0.209 Sum_probs=18.7
Q ss_pred CcHHHHhhhCC--CC--CHHHHHHHHHHHhh
Q 034546 48 DRWALIAGRIP--GR--KAEEIERFWIMRHG 74 (91)
Q Consensus 48 ~kW~~Ia~~lp--GR--t~n~vKnrw~~~l~ 74 (91)
+.|..||..|. .- .+..+++.|..+|-
T Consensus 58 ~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~ 88 (96)
T 2jxj_A 58 KKWSKVGSRLGYLPGKGTGSLLKSHYERILY 88 (96)
T ss_dssp TTHHHHHHHHTCCSCSCHHHHHHHHHTTTTH
T ss_pred CcHHHHHHHhCCCCcCcHHHHHHHHHHHHHH
Confidence 56999999972 21 25678888876654
No 140
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=24.41 E-value=1.5e+02 Score=19.32 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHHHhC-CcHHHHhhhCCCCCHHHHHHHHHHHhhH
Q 034546 30 NMSEQEEDLIYRMYKLVG-DRWALIAGRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 30 ~wT~eED~lLi~l~~~~G-~kW~~Ia~~lpGRt~n~vKnrw~~~l~k 75 (91)
..++-+. .|+.+...-| -.+..||..+ |=+...|..+...+...
T Consensus 24 ~ld~~d~-~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 24 PLDEIDK-KIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRES 68 (171)
T ss_dssp CCCHHHH-HHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHT
T ss_pred CCCHHHH-HHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 3444444 4554444444 5699999999 78999999998765544
No 141
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=23.98 E-value=96 Score=20.98 Aligned_cols=35 Identities=17% Similarity=0.021 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHH
Q 034546 37 DLIYRMYKLVGDRWALIAGRIPGRKAEEIERFWIMR 72 (91)
Q Consensus 37 ~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw~~~ 72 (91)
+.|+.+-..-|=.|..||..+ |++..-+-.-.++.
T Consensus 16 ~~I~~AK~~KGLTwe~IAe~i-G~S~v~vtaa~lGQ 50 (156)
T 1dw9_A 16 DAILLSKAKKDLSFAEIADGT-GLAEAFVTAALLGQ 50 (156)
T ss_dssp HHHHHHHHHTTCCHHHHHTTS-SSCHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCHHHHHHHh-CcCHHHHHHHHcCC
Confidence 567777777888999999999 89988777665543
No 142
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=23.71 E-value=92 Score=19.95 Aligned_cols=41 Identities=15% Similarity=0.017 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhC-CcHHHHhhhCCCCCHHHHHHHHHHHhhH
Q 034546 34 QEEDLIYRMYKLVG-DRWALIAGRIPGRKAEEIERFWIMRHGQ 75 (91)
Q Consensus 34 eED~lLi~l~~~~G-~kW~~Ia~~lpGRt~n~vKnrw~~~l~k 75 (91)
+-|..|+.+...-| -.+..||..+ |=+...|..+...+...
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~ 44 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEED 44 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 44666666655545 4699999999 99999999998765543
No 143
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=22.56 E-value=79 Score=15.36 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHH
Q 034546 30 NMSEQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIERFW 69 (91)
Q Consensus 30 ~wT~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vKnrw 69 (91)
.+++++...|+.++. -|-.-..||..| |-+...|.++.
T Consensus 5 ~~~~~~~~~i~~l~~-~g~s~~~ia~~l-gvs~~Tv~r~l 42 (52)
T 1jko_C 5 AINKHEQEQISRLLE-KGHPRQQLAIIF-GIGVSTLYRYF 42 (52)
T ss_dssp SSCTTHHHHHHHHHH-TTCCHHHHHHTT-SCCHHHHHHHS
T ss_pred CCCHHHHHHHHHHHH-cCCCHHHHHHHH-CCCHHHHHHHH
Confidence 356666677777765 466778999998 77777776643
No 144
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=21.33 E-value=89 Score=19.97 Aligned_cols=34 Identities=26% Similarity=0.468 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhC-CcHHHHhhhCCCCCHHHHHHHH
Q 034546 35 EEDLIYRMYKLVG-DRWALIAGRIPGRKAEEIERFW 69 (91)
Q Consensus 35 ED~lLi~l~~~~G-~kW~~Ia~~lpGRt~n~vKnrw 69 (91)
.=.+|..+...+| ..|..+++.| |=|++.|...=
T Consensus 12 ~~~~l~~i~d~v~~~~WK~~aRkL-GLse~~Id~Ie 46 (112)
T 1ich_A 12 DPATLYAVVENVPPLRWKEFVKRL-GLSDHEIDRLE 46 (112)
T ss_dssp -CHHHHHHHHHSCSTTHHHHHHHH-TCCHHHHHHHH
T ss_pred chHHHHHHHHhCCHHHHHHHHHHc-CCCHHHHHHHH
Confidence 3356777888888 5799999999 89999887653
No 145
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=21.05 E-value=1.1e+02 Score=16.54 Aligned_cols=33 Identities=18% Similarity=0.072 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHH
Q 034546 33 EQEEDLIYRMYKLVGDRWALIAGRIPGRKAEEIE 66 (91)
Q Consensus 33 ~eED~lLi~l~~~~G~kW~~Ia~~lpGRt~n~vK 66 (91)
.-|.++|......+|+..+..|..| |=+-..+-
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~ 50 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLY 50 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHH
Confidence 4588889999999999999999987 55544443
Done!