Query 034548
Match_columns 91
No_of_seqs 111 out of 518
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 06:01:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034548.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034548hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cww_A Insulysin, insulin-degr 99.1 2.1E-10 7.3E-15 89.0 9.0 89 2-90 359-447 (990)
2 1q2l_A Protease III; hydrolase 99.1 3.3E-10 1.1E-14 87.4 8.4 90 2-91 343-432 (939)
3 3ami_A Zinc peptidase; alpha/b 96.3 0.0051 1.7E-07 43.6 4.5 88 2-90 325-414 (445)
4 3amj_B Zinc peptidase inactive 95.6 0.02 6.7E-07 40.0 5.1 88 2-90 317-406 (424)
5 3gwb_A Peptidase M16 inactive 93.5 0.093 3.2E-06 36.5 4.3 88 2-90 324-413 (434)
6 3ih6_A Putative zinc protease; 93.2 0.028 9.7E-07 35.4 1.2 88 2-90 98-186 (197)
7 2fge_A Atprep2;, zinc metallop 92.6 0.093 3.2E-06 40.9 3.6 87 2-88 374-473 (995)
8 3d3y_A Uncharacterized protein 88.6 0.23 7.8E-06 34.3 2.2 86 2-88 327-413 (425)
9 3eoq_A Putative zinc protease; 84.3 0.57 2E-05 32.5 2.4 87 2-89 308-396 (406)
10 3cx5_A Cytochrome B-C1 complex 82.9 1.1 3.7E-05 31.0 3.3 87 2-90 315-405 (431)
11 1hr6_B Beta-MPP, mitochondrial 74.0 4.8 0.00016 27.9 4.5 86 2-89 331-419 (443)
12 1pp9_A Ubiquinol-cytochrome C 70.4 4 0.00014 28.5 3.4 83 2-89 332-419 (446)
13 3hdi_A Processing protease; CA 68.7 4 0.00014 28.1 3.1 87 2-89 308-395 (421)
14 1pp9_B Ubiquinol-cytochrome C 64.1 4.6 0.00016 27.9 2.6 53 2-55 334-386 (439)
15 1ik9_C DNA ligase IV; DNA END 51.8 15 0.00053 17.3 2.6 23 65-87 14-36 (37)
16 2ld7_B Paired amphipathic heli 40.3 37 0.0013 18.5 3.3 45 9-55 12-56 (75)
17 4h62_V Mediator of RNA polymer 32.2 28 0.00095 15.5 1.6 14 70-83 6-19 (31)
18 1hr6_A Alpha-MPP, mitochondria 31.2 30 0.001 24.3 2.5 84 2-87 328-417 (475)
19 2v75_A Nuclear polyadenylated 30.4 84 0.0029 18.3 3.9 29 3-31 66-94 (104)
20 3s5m_A Falcilysin; M16 metallo 30.0 1.1E+02 0.0039 25.0 5.8 66 2-67 480-548 (1193)
21 2b7e_A PRE-mRNA processing pro 28.9 32 0.0011 18.1 1.7 25 8-32 6-31 (59)
22 2vso_E Eukaryotic initiation f 28.2 24 0.00083 23.7 1.5 15 76-90 38-52 (284)
23 1w53_A Phosphoserine phosphata 21.5 33 0.0011 19.3 0.9 23 43-65 25-49 (84)
24 3op9_A PLI0006 protein; struct 20.7 78 0.0027 17.5 2.6 40 40-80 46-85 (114)
No 1
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.13 E-value=2.1e-10 Score=89.02 Aligned_cols=89 Identities=34% Similarity=0.715 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHHHHhCCCchHHHHHHHHhHhhccccCCCCChHHHHHHHHHhCCCCCcccccccCCCCCCCCHHHHHHH
Q 034548 2 QDVVGLLFKYINLLQQSGASKWIFDELSAVCEVTFHYQDKVPPIDYVVTVAANMETYPPQDWLVGESLPSNFNPEIIQMT 81 (91)
Q Consensus 2 ~~Vi~~vF~yi~llk~~~~~~~~~~E~~~i~~~~F~f~~~~~~~~~~~~la~~m~~~p~edvL~~~~l~~~~d~~~i~~~ 81 (91)
++|+.+++++|+.|++.|+.+|.++|.+.+....|++++..++.+++..++.+|+.+++++++.+...+..++++.|+++
T Consensus 359 ~~~~~~i~~~l~~l~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~t~~~i~~~ 438 (990)
T 3cww_A 359 EDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMV 438 (990)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTTTSCGGGTTTTTTCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcccCCcCCHHHHHHHHHHHHhhCCHHHHhccchhhhcCCHHHHHHH
Confidence 67999999999999999999999999999999999999888999999999999988999999999999999999999999
Q ss_pred HhccCCCcC
Q 034548 82 LKELSPKTV 90 (91)
Q Consensus 82 l~~l~p~N~ 90 (91)
++.|.|+|+
T Consensus 439 ~~~l~~~~~ 447 (990)
T 3cww_A 439 LDKLRPENV 447 (990)
T ss_dssp HTTCSGGGC
T ss_pred HHhcCHhHE
Confidence 999999986
No 2
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.09 E-value=3.3e-10 Score=87.45 Aligned_cols=90 Identities=29% Similarity=0.544 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHHHHhCCCchHHHHHHHHhHhhccccCCCCChHHHHHHHHHhCCCCCcccccccCCCCCCCCHHHHHHH
Q 034548 2 QDVVGLLFKYINLLQQSGASKWIFDELSAVCEVTFHYQDKVPPIDYVVTVAANMETYPPQDWLVGESLPSNFNPEIIQMT 81 (91)
Q Consensus 2 ~~Vi~~vF~yi~llk~~~~~~~~~~E~~~i~~~~F~f~~~~~~~~~~~~la~~m~~~p~edvL~~~~l~~~~d~~~i~~~ 81 (91)
++|+..++++|+.+++.|+.++.+++.+.....+|.++.+..+.+++..++.+|..+|+++++.+...+..++++.|+++
T Consensus 343 ~~~~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~vt~~~i~~~ 422 (939)
T 1q2l_A 343 DQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKER 422 (939)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHTTSCGGGTTTTTTCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHhhcCCHHHHhcCchhhhccCHHHHHHH
Confidence 67999999999999999999999999999999999999988999999999999988999999999999999999999999
Q ss_pred HhccCCCcCC
Q 034548 82 LKELSPKTVR 91 (91)
Q Consensus 82 l~~l~p~N~r 91 (91)
+++|+|+|++
T Consensus 423 ~~~l~~~~~~ 432 (939)
T 1q2l_A 423 LAMMTPQNAR 432 (939)
T ss_dssp HHHCSGGGCE
T ss_pred HHhcCHHHcE
Confidence 9999999863
No 3
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=96.27 E-value=0.0051 Score=43.56 Aligned_cols=88 Identities=7% Similarity=-0.056 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHhCCCchHHHHHHHHhHhhccccCCCCChHHHHHHHHHhCCC-CCcccccccCCCCCCCCHHHHHH
Q 034548 2 QDVVGLLFKYINLLQQSGASKWIFDELSAVCEVTFHYQDKVPPIDYVVTVAANMET-YPPQDWLVGESLPSNFNPEIIQM 80 (91)
Q Consensus 2 ~~Vi~~vF~yi~llk~~~~~~~~~~E~~~i~~~~F~f~~~~~~~~~~~~la~~m~~-~p~edvL~~~~l~~~~d~~~i~~ 80 (91)
++++..+++.|+.|++.|+.++-++..+.....+|.... ..+...+..++..... .++..+......++..+++.|++
T Consensus 325 ~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~ 403 (445)
T 3ami_A 325 AQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQ-DSLMGQATQIGGLEVLGLSWRDDDRFYQQLRSVTAAEVKA 403 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHTTTCCTTHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHcCCChHHHHHHHHHHHcCCHHHHHH
Confidence 578999999999999999999999999988888887654 4566778888877654 46666666666778899999999
Q ss_pred HHh-ccCCCcC
Q 034548 81 TLK-ELSPKTV 90 (91)
Q Consensus 81 ~l~-~l~p~N~ 90 (91)
+++ +|+|+|+
T Consensus 404 ~a~~~l~~~~~ 414 (445)
T 3ami_A 404 AAARLLTDDTL 414 (445)
T ss_dssp HHHTTSCSTTE
T ss_pred HHHHHcCcCCe
Confidence 996 6788774
No 4
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=95.62 E-value=0.02 Score=39.98 Aligned_cols=88 Identities=8% Similarity=-0.003 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHHhCCCchHHHHHHHHhHhhccccCCCCChHHHHHHHHHhCC-CCCcccccccCCCCCCCCHHHHHH
Q 034548 2 QDVVGLLFKYINLLQQSGASKWIFDELSAVCEVTFHYQDKVPPIDYVVTVAANME-TYPPQDWLVGESLPSNFNPEIIQM 80 (91)
Q Consensus 2 ~~Vi~~vF~yi~llk~~~~~~~~~~E~~~i~~~~F~f~~~~~~~~~~~~la~~m~-~~p~edvL~~~~l~~~~d~~~i~~ 80 (91)
+++++.+++.++.+++.|+.++-++..+.....++....+ .+...+..++.... ..+...+......+...+++.|++
T Consensus 317 ~~~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~ 395 (424)
T 3amj_B 317 DEAVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLD-SNAKILGQVAVIGYYGLPLDYLDHYTERVQAVTVEQVRE 395 (424)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGGS-SHHHHHHHHHHHHHTTCCTTTTTSHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHhcC-CHHHHHHHHHHHHHcCCChhHHHHHHHHHHcCCHHHHHH
Confidence 5788999999999999999999999988887777775443 56667777765543 345444434344566788999999
Q ss_pred HHh-ccCCCcC
Q 034548 81 TLK-ELSPKTV 90 (91)
Q Consensus 81 ~l~-~l~p~N~ 90 (91)
+.+ +|+|+|+
T Consensus 396 ~a~~~l~~~~~ 406 (424)
T 3amj_B 396 AFARHVKRENL 406 (424)
T ss_dssp HHHHHCCGGGC
T ss_pred HHHHhcCccce
Confidence 986 6888875
No 5
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=93.45 E-value=0.093 Score=36.54 Aligned_cols=88 Identities=11% Similarity=0.067 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHHHhCCCchHHHHHHHHhHhhccccCCCCChHHHHHHHHHhCCC-CCcccccccCCCCCCCCHHHHHH
Q 034548 2 QDVVGLLFKYINLLQQSGASKWIFDELSAVCEVTFHYQDKVPPIDYVVTVAANMET-YPPQDWLVGESLPSNFNPEIIQM 80 (91)
Q Consensus 2 ~~Vi~~vF~yi~llk~~~~~~~~~~E~~~i~~~~F~f~~~~~~~~~~~~la~~m~~-~p~edvL~~~~l~~~~d~~~i~~ 80 (91)
++++..+.+.++-+++.|+.++-++..+.-...++.... ..+...+..++..... .+...+-.....+...+++.|++
T Consensus 324 ~~~~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~ 402 (434)
T 3gwb_A 324 EGTLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLST-ASNADIVGQLGAMGFYNLPLSYLEDFMRQSQELTVEQVKA 402 (434)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CC-CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhc-cCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhCCHHHHHH
Confidence 578899999999999999999999999988888777544 3566777777665432 44433333334556678888888
Q ss_pred HHh-ccCCCcC
Q 034548 81 TLK-ELSPKTV 90 (91)
Q Consensus 81 ~l~-~l~p~N~ 90 (91)
+.+ +|+|+|+
T Consensus 403 ~a~~~l~~~~~ 413 (434)
T 3gwb_A 403 AMNKHLNVDKM 413 (434)
T ss_dssp HHHHHCCGGGC
T ss_pred HHHHhcChhhE
Confidence 887 6788764
No 6
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=93.16 E-value=0.028 Score=35.43 Aligned_cols=88 Identities=8% Similarity=-0.005 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHHHhCCCchHHHHHHHHhHhhccccCCCCChHHHHHHHHHhCCCCCcccccccCCCCCCCCHHHHHHH
Q 034548 2 QDVVGLLFKYINLLQQSGASKWIFDELSAVCEVTFHYQDKVPPIDYVVTVAANMETYPPQDWLVGESLPSNFNPEIIQMT 81 (91)
Q Consensus 2 ~~Vi~~vF~yi~llk~~~~~~~~~~E~~~i~~~~F~f~~~~~~~~~~~~la~~m~~~p~edvL~~~~l~~~~d~~~i~~~ 81 (91)
++++..+.+-|+-+++.|+.+.-++..+.....++.+. ..++...+..++.....-++..+......+...+++.|+++
T Consensus 98 ~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~-~~~~~~~a~~l~~~~~~g~~~~~~~~~~~i~~vT~~dv~~~ 176 (197)
T 3ih6_A 98 DKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQT-YADPEKVGVALSEAIASGDWRLFFLQRDRVREAKLDDVQRA 176 (197)
T ss_dssp HHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHH-HTSHHHHHHHHHHHHHTTCTTHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCHHHHHHH
Confidence 56888999999999999999999999888877777643 34556677777766543233333333345567788888888
Q ss_pred Hh-ccCCCcC
Q 034548 82 LK-ELSPKTV 90 (91)
Q Consensus 82 l~-~l~p~N~ 90 (91)
.+ +|+|+|.
T Consensus 177 a~~~l~~~~~ 186 (197)
T 3ih6_A 177 AVAYLVRSNR 186 (197)
T ss_dssp HHHHSSGGGC
T ss_pred HHHhCCccCe
Confidence 86 6777764
No 7
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=92.64 E-value=0.093 Score=40.93 Aligned_cols=87 Identities=11% Similarity=0.127 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHHHhCCCchHHHHHHHHhHhhccccCCC-CChH--HHHHHHHHhCC-CCCcccccccCCCCCCCCH--
Q 034548 2 QDVVGLLFKYINLLQQSGASKWIFDELSAVCEVTFHYQDK-VPPI--DYVVTVAANME-TYPPQDWLVGESLPSNFNP-- 75 (91)
Q Consensus 2 ~~Vi~~vF~yi~llk~~~~~~~~~~E~~~i~~~~F~f~~~-~~~~--~~~~~la~~m~-~~p~edvL~~~~l~~~~d~-- 75 (91)
++++..+++.|+.+++.|+.++.++..+.-.+..|..... ..|. .++..++.... ..++...+.....+..+++
T Consensus 374 ~~~~~~i~~~l~~l~~~g~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (995)
T 2fge_A 374 QKVEELIMDTLKKLAEEGFDNDAVEASMNTIEFSLRENNTGSFPRGLSLMLQSISKWIYDMDPFEPLKYTEPLKALKTRI 453 (995)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCTTSCHHHHHHHHHHHHHTTTSCSSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHhcCCChHHHhhhHHHHHHHHHHh
Confidence 6899999999999999999999999877766655554332 2344 56677665543 3466666665555666666
Q ss_pred --H----HHHHHHhc-cCCC
Q 034548 76 --E----IIQMTLKE-LSPK 88 (91)
Q Consensus 76 --~----~i~~~l~~-l~p~ 88 (91)
+ .|+++++. |.++
T Consensus 454 ~~~~~~~~v~~~~~~~l~~~ 473 (995)
T 2fge_A 454 AEEGSKAVFSPLIEKLILNN 473 (995)
T ss_dssp HHHCHHHHHHHHHHHHTTTC
T ss_pred cCCccHHHHHHHHHHHhcCC
Confidence 6 68888764 6543
No 8
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=88.58 E-value=0.23 Score=34.31 Aligned_cols=86 Identities=9% Similarity=-0.074 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHHhCCCchHHHHHHHHhHhhccccCCCCChHHHHHHHHHhCCCC-CcccccccCCCCCCCCHHHHHH
Q 034548 2 QDVVGLLFKYINLLQQSGASKWIFDELSAVCEVTFHYQDKVPPIDYVVTVAANMETY-PPQDWLVGESLPSNFNPEIIQM 80 (91)
Q Consensus 2 ~~Vi~~vF~yi~llk~~~~~~~~~~E~~~i~~~~F~f~~~~~~~~~~~~la~~m~~~-p~edvL~~~~l~~~~d~~~i~~ 80 (91)
+++++.+.+.++.+++.|+.++-++..+.....++.... ..+...+..++.....+ .+.++......+...+++.|++
T Consensus 327 ~~~~~~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~edv~~ 405 (425)
T 3d3y_A 327 NQVLRLISTELENIRLGKIRELEIEQTKAMLKNQYILAL-DNAGAWLEKEYLNELMPQTMLTAEEWIARINAVTIPEIQE 405 (425)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHSTTSCCCHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhcc-cCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhCCHHHHHH
Confidence 578899999999999999999999999888777777644 35566666666554331 1222222223344456666666
Q ss_pred HHhccCCC
Q 034548 81 TLKELSPK 88 (91)
Q Consensus 81 ~l~~l~p~ 88 (91)
+.+.+.|+
T Consensus 406 ~a~~~~~~ 413 (425)
T 3d3y_A 406 VAKRLELQ 413 (425)
T ss_dssp HHHHCEEE
T ss_pred HHHhccCc
Confidence 66655444
No 9
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=84.31 E-value=0.57 Score=32.47 Aligned_cols=87 Identities=8% Similarity=0.056 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHhCCCchHHHHHHHHhHhhccccCCCCChHHHHHHHHHhCCC-CCcccccccCCCCCCCCHHHHHH
Q 034548 2 QDVVGLLFKYINLLQQSGASKWIFDELSAVCEVTFHYQDKVPPIDYVVTVAANMET-YPPQDWLVGESLPSNFNPEIIQM 80 (91)
Q Consensus 2 ~~Vi~~vF~yi~llk~~~~~~~~~~E~~~i~~~~F~f~~~~~~~~~~~~la~~m~~-~p~edvL~~~~l~~~~d~~~i~~ 80 (91)
++++..+.+.|+.+++.|+.+.-++..+.....++... ..++...+..++..... -++..+-.-...+...+++.|++
T Consensus 308 ~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~ 386 (406)
T 3eoq_A 308 GEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFA-GETPMQRLFHLGMEYLYTGRYLSLEEVKARVQRVTSREVNA 386 (406)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCHHHHHH
Confidence 57899999999999999999998988888777777643 33455666666655432 23322222222345567788888
Q ss_pred HHh-ccCCCc
Q 034548 81 TLK-ELSPKT 89 (91)
Q Consensus 81 ~l~-~l~p~N 89 (91)
+.+ +|+|++
T Consensus 387 ~a~~~l~~~~ 396 (406)
T 3eoq_A 387 LLERGFLEKG 396 (406)
T ss_dssp HHHTTTTTSC
T ss_pred HHHHhcCccc
Confidence 876 456665
No 10
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=82.94 E-value=1.1 Score=30.98 Aligned_cols=87 Identities=8% Similarity=0.024 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHHhCCCchHHHHHHHHhHhhccccC-CCCChHHHHHHHHHhCC--CCCcccccccCCCCCCCCHHHH
Q 034548 2 QDVVGLLFKYINLLQQSGASKWIFDELSAVCEVTFHYQ-DKVPPIDYVVTVAANME--TYPPQDWLVGESLPSNFNPEII 78 (91)
Q Consensus 2 ~~Vi~~vF~yi~llk~~~~~~~~~~E~~~i~~~~F~f~-~~~~~~~~~~~la~~m~--~~p~edvL~~~~l~~~~d~~~i 78 (91)
+++++.+.+.++-+++ |+.++-++..+.....++..+ ....+...+..++..+. ..+ .+.-.-...+...+++.|
T Consensus 315 ~~~~~~~~~~l~~l~~-~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~vt~~dv 392 (431)
T 3cx5_A 315 DDLIHFTLKQWNRLTI-SVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSK-LSLGEAFKKIDAITVKDV 392 (431)
T ss_dssp HHHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSSC-CCHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHhcCCHHHH
Confidence 5788999999999998 999999999888777777751 23456677777766532 121 122111223456678888
Q ss_pred HHHHh-ccCCCcC
Q 034548 79 QMTLK-ELSPKTV 90 (91)
Q Consensus 79 ~~~l~-~l~p~N~ 90 (91)
+++.+ ++.|+|.
T Consensus 393 ~~~a~~~l~~~~~ 405 (431)
T 3cx5_A 393 KAWAGKRLWDQDI 405 (431)
T ss_dssp HHHHHHHTTTCCC
T ss_pred HHHHHHHcccCCc
Confidence 88775 4666653
No 11
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=74.02 E-value=4.8 Score=27.92 Aligned_cols=86 Identities=10% Similarity=-0.060 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHhCCCchHHHHHHHHhHhhccccCCCCChHHHHHHHHHhCC--CCCcccccccCCCCCCCCHHHHH
Q 034548 2 QDVVGLLFKYINLLQQSGASKWIFDELSAVCEVTFHYQDKVPPIDYVVTVAANME--TYPPQDWLVGESLPSNFNPEIIQ 79 (91)
Q Consensus 2 ~~Vi~~vF~yi~llk~~~~~~~~~~E~~~i~~~~F~f~~~~~~~~~~~~la~~m~--~~p~edvL~~~~l~~~~d~~~i~ 79 (91)
++++..+.+.++-+++.|+.+.-++..+.-...++...- ..+...+..++..+. ..+ .++-.-...+...+++.|+
T Consensus 331 ~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~vt~~dv~ 408 (443)
T 1hr6_B 331 RLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSL-DGSTAIVEDIGRQVVTTGKR-LSPEEVFEQVDKITKDDII 408 (443)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTC-CSHHHHHHHHHHHHHHHSSC-CCHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCc-CCHHHHHHHHHhCCHHHHH
Confidence 578899999999999988999888888877777776542 345666666665531 121 1111111234456777787
Q ss_pred HHHhc-cCCCc
Q 034548 80 MTLKE-LSPKT 89 (91)
Q Consensus 80 ~~l~~-l~p~N 89 (91)
++.+. |.|++
T Consensus 409 ~~a~~~l~~~~ 419 (443)
T 1hr6_B 409 MWANYRLQNKP 419 (443)
T ss_dssp HHHHHHSSSCC
T ss_pred HHHHHHhccCC
Confidence 77754 56654
No 12
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=70.37 E-value=4 Score=28.52 Aligned_cols=83 Identities=8% Similarity=0.042 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHHhCCCchHHHHHHHHhHhhccccCCCCChHHHHHHHHHhC-CC---CCcccccccCCCCCCCCHHH
Q 034548 2 QDVVGLLFKYINLLQQSGASKWIFDELSAVCEVTFHYQDKVPPIDYVVTVAANM-ET---YPPQDWLVGESLPSNFNPEI 77 (91)
Q Consensus 2 ~~Vi~~vF~yi~llk~~~~~~~~~~E~~~i~~~~F~f~~~~~~~~~~~~la~~m-~~---~p~edvL~~~~l~~~~d~~~ 77 (91)
++++..+.+.++.+++ |+.+.-++..+.-...++... ..++...+..++..+ .. .+.++++ ..+...+++.
T Consensus 332 ~~~~~~i~~~l~~l~~-~~t~~el~~ak~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~i~~vt~ed 406 (446)
T 1pp9_A 332 DDMMFVLQGQWMRLCT-SATESEVLRGKNLLRNALVSH-LDGTTPVCEDIGRSLLTYGRRIPLAEWE---SRIAEVDARV 406 (446)
T ss_dssp HHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHH-SCSHHHHHHHHHHHHHHTSSCCCHHHHH---HHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHcCCCCCHHHHH---HHHHcCCHHH
Confidence 5788999999999988 688888888777766666643 245667777776654 21 2222322 2355678888
Q ss_pred HHHHHhc-cCCCc
Q 034548 78 IQMTLKE-LSPKT 89 (91)
Q Consensus 78 i~~~l~~-l~p~N 89 (91)
|+++.+. +.|++
T Consensus 407 v~~~a~~~~~~~~ 419 (446)
T 1pp9_A 407 VREVCSKYFYDQC 419 (446)
T ss_dssp HHHHHHHHTTTCC
T ss_pred HHHHHHHHcCCCC
Confidence 8888864 56654
No 13
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=68.65 E-value=4 Score=28.15 Aligned_cols=87 Identities=8% Similarity=-0.078 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHHHhCCCchHHHHHHHHhHhhccccCCCCChHHHHHHHHHhCCC-CCcccccccCCCCCCCCHHHHHH
Q 034548 2 QDVVGLLFKYINLLQQSGASKWIFDELSAVCEVTFHYQDKVPPIDYVVTVAANMET-YPPQDWLVGESLPSNFNPEIIQM 80 (91)
Q Consensus 2 ~~Vi~~vF~yi~llk~~~~~~~~~~E~~~i~~~~F~f~~~~~~~~~~~~la~~m~~-~p~edvL~~~~l~~~~d~~~i~~ 80 (91)
++++..+.+.++-+++.|+.+.-++..+.-...++...- .++...+..++..... -++...-.-...+...+++.|++
T Consensus 308 ~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~ 386 (421)
T 3hdi_A 308 DDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSL-ESTNSRMSRNGKNELLLKKHRSLDEMIEQINAVQKQDVSR 386 (421)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHcCCHHHHHH
Confidence 578999999999999999999988888877666665432 3444556666543221 11111111111244456667776
Q ss_pred HHhccCCCc
Q 034548 81 TLKELSPKT 89 (91)
Q Consensus 81 ~l~~l~p~N 89 (91)
+.+.+-|+|
T Consensus 387 ~a~~~~~~~ 395 (421)
T 3hdi_A 387 LAKILLSAS 395 (421)
T ss_dssp HHHHHTTSC
T ss_pred HHHHHcccC
Confidence 665322554
No 14
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=64.10 E-value=4.6 Score=27.86 Aligned_cols=53 Identities=9% Similarity=0.095 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHhCCCchHHHHHHHHhHhhccccCCCCChHHHHHHHHHhC
Q 034548 2 QDVVGLLFKYINLLQQSGASKWIFDELSAVCEVTFHYQDKVPPIDYVVTVAANM 55 (91)
Q Consensus 2 ~~Vi~~vF~yi~llk~~~~~~~~~~E~~~i~~~~F~f~~~~~~~~~~~~la~~m 55 (91)
+++++.+.+.++-+++.|+.+.-++..+.....++.... ..+...+..++...
T Consensus 334 ~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~-~~~~~~~~~~~~~~ 386 (439)
T 1pp9_B 334 GDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSV-ESSEGFLDEVGSQA 386 (439)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHT-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHH
Confidence 578889999999999989999999998887777776543 34556666666543
No 15
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=51.82 E-value=15 Score=17.35 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=18.5
Q ss_pred ccCCCCCCCCHHHHHHHHhccCC
Q 034548 65 VGESLPSNFNPEIIQMTLKELSP 87 (91)
Q Consensus 65 ~~~~l~~~~d~~~i~~~l~~l~p 87 (91)
.|+.....-+++.++.+|+.|.+
T Consensus 14 yGDSY~rd~t~~eLk~il~~m~~ 36 (37)
T 1ik9_C 14 YGDSYFIDTDLNQLKEVFSGIKN 36 (37)
T ss_dssp TSCBSSSCCCHHHHHHHHHTCC-
T ss_pred ccccccCcCCHHHHHHHHHHccc
Confidence 46777778899999999998853
No 16
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=40.32 E-value=37 Score=18.52 Aligned_cols=45 Identities=11% Similarity=0.210 Sum_probs=30.8
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHhhccccCCCCChHHHHHHHHHhC
Q 034548 9 FKYINLLQQSGASKWIFDELSAVCEVTFHYQDKVPPIDYVVTVAANM 55 (91)
Q Consensus 9 F~yi~llk~~~~~~~~~~E~~~i~~~~F~f~~~~~~~~~~~~la~~m 55 (91)
++|++-+|+.=..+..|+|.-++..+ |+ ++..+-.+.+..++.-+
T Consensus 12 ~~Ff~kVK~~l~~~~~Y~eFLk~lnl-f~-q~~Id~~eLv~~V~~~l 56 (75)
T 2ld7_B 12 SLFFDKVRKALRSAEAYENFLRCLVI-FN-QEVISRAELVQLVSPFL 56 (75)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHH-HH-TTCSCHHHHHHHTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-hh-hcCcCHHHHHHHHHHHH
Confidence 57788887654567899999998887 66 56666555555544433
No 17
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=32.15 E-value=28 Score=15.47 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=8.9
Q ss_pred CCCCCHHHHHHHHh
Q 034548 70 PSNFNPEIIQMTLK 83 (91)
Q Consensus 70 ~~~~d~~~i~~~l~ 83 (91)
...||+..|.++|+
T Consensus 6 vtrfdekqieelld 19 (31)
T 4h62_V 6 VTRFDEKQIEELLD 19 (31)
T ss_dssp ----CHHHHHHHHH
T ss_pred cccccHHHHHHHHH
Confidence 45799999999985
No 18
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=31.24 E-value=30 Score=24.26 Aligned_cols=84 Identities=5% Similarity=-0.109 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHHh---CCCchHHHHHHHHhHhhccccCCCCChHHHHHHHHHhCCC--CCcccccccCCCCCCCCHH
Q 034548 2 QDVVGLLFKYINLLQQ---SGASKWIFDELSAVCEVTFHYQDKVPPIDYVVTVAANMET--YPPQDWLVGESLPSNFNPE 76 (91)
Q Consensus 2 ~~Vi~~vF~yi~llk~---~~~~~~~~~E~~~i~~~~F~f~~~~~~~~~~~~la~~m~~--~p~edvL~~~~l~~~~d~~ 76 (91)
+++++.+.+-++-+++ .|+.++-++..+.....++.... .++...+..++..+.. .+. +.-.-...++..+++
T Consensus 328 ~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~i~~vt~~ 405 (475)
T 1hr6_A 328 PQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNL-ESKLVELEDMGRQVLMHGRKI-PVNEMISKIEDLKPD 405 (475)
T ss_dssp HHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHT-TSHHHHHHHHHHHHHHHSCCC-CHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHcCCHH
Confidence 4678888888888877 67899889888877777776533 3455567776664321 111 111112234556677
Q ss_pred HHHHHHh-ccCC
Q 034548 77 IIQMTLK-ELSP 87 (91)
Q Consensus 77 ~i~~~l~-~l~p 87 (91)
.|+++.+ +|.|
T Consensus 406 dv~~~a~~~l~~ 417 (475)
T 1hr6_A 406 DISRVAEMIFTG 417 (475)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhhh
Confidence 7777765 3455
No 19
>2v75_A Nuclear polyadenylated RNA-binding protein NAB2; metal-binding, nucleus, zinc-finger, nuclear PR; 1.8A {Saccharomyces cerevisiae} PDB: 2jps_A 3lcn_A
Probab=30.40 E-value=84 Score=18.29 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHh
Q 034548 3 DVVGLLFKYINLLQQSGASKWIFDELSAV 31 (91)
Q Consensus 3 ~Vi~~vF~yi~llk~~~~~~~~~~E~~~i 31 (91)
+|++.+|.-+..||..+.-+-++.-++..
T Consensus 66 ~vVqt~F~~l~~L~~g~~~~~~~~K~~~~ 94 (104)
T 2v75_A 66 NVVQTAFFALEALQQGESAENIVSKIRMM 94 (104)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCchHHHHHHHHhcc
Confidence 57777777777777776666666655544
No 20
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=30.01 E-value=1.1e+02 Score=24.99 Aligned_cols=66 Identities=12% Similarity=0.072 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHhCCCchHHHHHHHHhHhhccccCCCCChH--HHHHHHH-HhCCCCCcccccccC
Q 034548 2 QDVVGLLFKYINLLQQSGASKWIFDELSAVCEVTFHYQDKVPPI--DYVVTVA-ANMETYPPQDWLVGE 67 (91)
Q Consensus 2 ~~Vi~~vF~yi~llk~~~~~~~~~~E~~~i~~~~F~f~~~~~~~--~~~~~la-~~m~~~p~edvL~~~ 67 (91)
+++.++|.+.|+-+++.|+.++..+-.+.-.+..++......|. .++..+. .+++.-.|.+.|...
T Consensus 480 ~~~~~~I~~~L~~l~~~gi~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~w~~~~dp~~~l~~~ 548 (1193)
T 3s5m_A 480 YEVEDVIMNALKKVVKEGFNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSKLNYNRDPLLIFEFE 548 (1193)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHTTCCTTTTTSHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 47899999999999999999987776665555555544333343 4443433 344444555544433
No 21
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=28.93 E-value=32 Score=18.09 Aligned_cols=25 Identities=16% Similarity=0.458 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCCc-hHHHHHHHHhH
Q 034548 8 LFKYINLLQQSGAS-KWIFDELSAVC 32 (91)
Q Consensus 8 vF~yi~llk~~~~~-~~~~~E~~~i~ 32 (91)
.=+|++||++++++ .|-|+..-...
T Consensus 6 e~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 6 EKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp HHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34789999999854 68887654433
No 22
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=28.20 E-value=24 Score=23.75 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=13.0
Q ss_pred HHHHHHHhccCCCcC
Q 034548 76 EIIQMTLKELSPKTV 90 (91)
Q Consensus 76 ~~i~~~l~~l~p~N~ 90 (91)
..|+.+||.|||+|+
T Consensus 38 r~vkgiLNKLT~~nf 52 (284)
T 2vso_E 38 RKMKSLLNKLTLEMF 52 (284)
T ss_dssp HHHHHHHHSCCSTTH
T ss_pred HHHHHHHhhCCHHHH
Confidence 458899999999985
No 23
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=21.50 E-value=33 Score=19.33 Aligned_cols=23 Identities=9% Similarity=0.257 Sum_probs=17.9
Q ss_pred ChHHHHHHHHHhC--CCCCcccccc
Q 034548 43 PPIDYVVTVAANM--ETYPPQDWLV 65 (91)
Q Consensus 43 ~~~~~~~~la~~m--~~~p~edvL~ 65 (91)
.....++.++..+ +.+.|||+++
T Consensus 25 ~~Ly~~q~fs~~~iek~i~PEeiV~ 49 (84)
T 1w53_A 25 TSLYQAQKFSRKTIEHQIPPEEIIS 49 (84)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHhhHHHHHcCCCHHHHHH
Confidence 5667788888887 6788888875
No 24
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=20.71 E-value=78 Score=17.54 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=26.1
Q ss_pred CCCChHHHHHHHHHhCCCCCcccccccCCCCCCCCHHHHHH
Q 034548 40 DKVPPIDYVVTVAANMETYPPQDWLVGESLPSNFNPEIIQM 80 (91)
Q Consensus 40 ~~~~~~~~~~~la~~m~~~p~edvL~~~~l~~~~d~~~i~~ 80 (91)
...++.+.+..||..+ .+++.+++.+..-....+...+..
T Consensus 46 ~~~p~~~~l~~la~~l-~v~~~~l~~~~~~~~~~~~~~~~~ 85 (114)
T 3op9_A 46 ETKPDIEKLIRLATYF-HLSIDELVGYVQEDKVWNDLSLKQ 85 (114)
T ss_dssp SSCCCHHHHHHHHHHH-TCCHHHHHTCCCC--CCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHh-CCCHHHHhcCCCcccccCcHHHHH
Confidence 3456778999999887 588898888866544443333333
Done!