BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034549
         (91 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2NQB|C Chain C, Drosophila Nucleosome Structure
 pdb|2NQB|G Chain G, Drosophila Nucleosome Structure
          Length = 123

 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/58 (77%), Positives = 51/58 (87%)

Query: 17  GNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTNERV 74
           GNAARDNKK +IIPRH+QLA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKKT ++ 
Sbjct: 66  GNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKKA 123


>pdb|2PYO|C Chain C, Drosophila Nucleosome Core
 pdb|2PYO|G Chain G, Drosophila Nucleosome Core
          Length = 120

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/54 (83%), Positives = 49/54 (90%)

Query: 17  GNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKT 70
           GNAARDNKK +IIPRH+QLA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKKT
Sbjct: 66  GNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 119


>pdb|2HIO|A Chain A, Histone Octamer (Chicken), Chromosomal Protein
 pdb|3C9K|A Chain A, Model Of Histone Octamer Tubular Crystals
 pdb|3C9K|E Chain E, Model Of Histone Octamer Tubular Crystals
          Length = 128

 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/56 (78%), Positives = 48/56 (85%)

Query: 17  GNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTNE 72
           GNAARDNKK +IIPRH+QLA+RNDEEL KLL  VTIA GGVLPNI  VLLPKKT+ 
Sbjct: 67  GNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDS 122


>pdb|1ZBB|C Chain C, Structure Of The 4_601_167 Tetranucleosome
 pdb|1ZBB|G Chain G, Structure Of The 4_601_167 Tetranucleosome
 pdb|1ZBB|CC Chain c, Structure Of The 4_601_167 Tetranucleosome
 pdb|1ZBB|GG Chain g, Structure Of The 4_601_167 Tetranucleosome
 pdb|2FJ7|C Chain C, Crystal Structure Of Nucleosome Core Particle Containing A
           Poly (Da.Dt) Sequence Element
 pdb|2FJ7|G Chain G, Crystal Structure Of Nucleosome Core Particle Containing A
           Poly (Da.Dt) Sequence Element
 pdb|3LJA|C Chain C, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
           Binding In The Nucleosome
 pdb|3LJA|G Chain G, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
           Binding In The Nucleosome
 pdb|3KXB|C Chain C, Structural Characterization Of H3k56q Nucleosomes And
           Nucleosomal Arrays
 pdb|3KXB|G Chain G, Structural Characterization Of H3k56q Nucleosomes And
           Nucleosomal Arrays
 pdb|3MVD|C Chain C, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
           With The Nucleosome Core Particle
 pdb|3MVD|G Chain G, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
           With The Nucleosome Core Particle
 pdb|3TU4|C Chain C, Crystal Structure Of The Sir3 Bah Domain In Complex With A
           Nucleosome Core Particle.
 pdb|3TU4|G Chain G, Crystal Structure Of The Sir3 Bah Domain In Complex With A
           Nucleosome Core Particle.
 pdb|3REH|C Chain C, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
           Particle Assembled With A 145 Bp Alpha-Satellite Dna
           (Ncp145)
 pdb|3REH|G Chain G, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
           Particle Assembled With A 145 Bp Alpha-Satellite Dna
           (Ncp145)
 pdb|3REI|C Chain C, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
           Particle Assembled With A 145 Bp Alpha-Satellite Dna
           (Ncp145) Derivatized With Triamminechloroplatinum(Ii)
           Chloride
 pdb|3REI|G Chain G, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
           Particle Assembled With A 145 Bp Alpha-Satellite Dna
           (Ncp145) Derivatized With Triamminechloroplatinum(Ii)
           Chloride
 pdb|3REJ|C Chain C, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
           Particle Assembled With A 146 Bp Alpha-Satellite Dna
           (Ncp146b)
 pdb|3REJ|G Chain G, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
           Particle Assembled With A 146 Bp Alpha-Satellite Dna
           (Ncp146b)
 pdb|3REK|C Chain C, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
           Particle Assembled With A 146 Bp Alpha-Satellite Dna
           (Ncp146b) Derivatized With Oxaliplatin
 pdb|3REK|G Chain G, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
           Particle Assembled With A 146 Bp Alpha-Satellite Dna
           (Ncp146b) Derivatized With Oxaliplatin
 pdb|3REL|C Chain C, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
           Particle Assembled With A 146 Bp Alpha-Satellite Dna
           (Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
           Chloride
 pdb|3REL|G Chain G, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
           Particle Assembled With A 146 Bp Alpha-Satellite Dna
           (Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
           Chloride
 pdb|3UT9|C Chain C, Crystal Structure Of Nucleosome Core Particle Assembled
           With A Palindromic Widom '601' Derivative (Ncp-601l)
 pdb|3UT9|G Chain G, Crystal Structure Of Nucleosome Core Particle Assembled
           With A Palindromic Widom '601' Derivative (Ncp-601l)
 pdb|3UTA|C Chain C, Crystal Structure Of Nucleosome Core Particle Assembled
           With An Alpha- Satellite Sequence Containing Two Ttaaa
           Elements (Ncp-Ta2)
 pdb|3UTA|G Chain G, Crystal Structure Of Nucleosome Core Particle Assembled
           With An Alpha- Satellite Sequence Containing Two Ttaaa
           Elements (Ncp-Ta2)
 pdb|3UTB|C Chain C, Crystal Structure Of Nucleosome Core Particle Assembled
           With The 146b Alpha-Satellite Sequence (Ncp146b)
 pdb|3UTB|G Chain G, Crystal Structure Of Nucleosome Core Particle Assembled
           With The 146b Alpha-Satellite Sequence (Ncp146b)
          Length = 129

 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/54 (83%), Positives = 47/54 (87%)

Query: 17  GNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKT 70
           GNAARDNKK +IIPRH+QLAVRNDEEL KLL  VTIA GGVLPNI  VLLPKKT
Sbjct: 67  GNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKT 120


>pdb|3C1B|C Chain C, The Effect Of H3 K79 Dimethylation And H4 K20
           Trimethylation On Nucleosome And Chromatin Structure
 pdb|3C1B|G Chain G, The Effect Of H3 K79 Dimethylation And H4 K20
           Trimethylation On Nucleosome And Chromatin Structure
 pdb|3C1C|C Chain C, The Effect Of H3 K79 Dimethylation And H4 K20
           Trimethylation On Nucleosome And Chromatin Structure
 pdb|3C1C|G Chain G, The Effect Of H3 K79 Dimethylation And H4 K20
           Trimethylation On Nucleosome And Chromatin Structure
          Length = 129

 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/54 (83%), Positives = 47/54 (87%)

Query: 17  GNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKT 70
           GNAARDNKK +IIPRH+QLAVRNDEEL KLL  VTIA GGVLPNI  VLLPKKT
Sbjct: 67  GNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKT 120


>pdb|1M18|C Chain C, Ligand Binding Alters The Structure And Dynamics Of
           Nucleosomal Dna
 pdb|1M18|G Chain G, Ligand Binding Alters The Structure And Dynamics Of
           Nucleosomal Dna
 pdb|1M19|C Chain C, Ligand Binding Alters The Structure And Dynamics Of
           Nucleosomal Dna
 pdb|1M19|G Chain G, Ligand Binding Alters The Structure And Dynamics Of
           Nucleosomal Dna
 pdb|1M1A|C Chain C, Ligand Binding Alters The Structure And Dynamics Of
           Nucleosomal Dna
 pdb|1M1A|G Chain G, Ligand Binding Alters The Structure And Dynamics Of
           Nucleosomal Dna
 pdb|1P34|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
           Containing Histone 'sin' Mutants
 pdb|1P34|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
           Containing Histone 'sin' Mutants
 pdb|1P3A|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
           Containing Histone 'sin' Mutants
 pdb|1P3A|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
           Containing Histone 'sin' Mutants
 pdb|1P3B|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
           Containing Histone 'sin' Mutants
 pdb|1P3B|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
           Containing Histone 'sin' Mutants
 pdb|1P3F|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
           Containing Histone 'sin' Mutants
 pdb|1P3F|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
           Containing Histone 'sin' Mutants
 pdb|1P3G|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
           Containing Histone 'sin' Mutants
 pdb|1P3G|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
           Containing Histone 'sin' Mutants
 pdb|1P3I|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
           Containing Histone 'sin' Mutants
 pdb|1P3I|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
           Containing Histone 'sin' Mutants
 pdb|1P3K|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
           Containing Histone 'sin' Mutants
 pdb|1P3K|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
           Containing Histone 'sin' Mutants
 pdb|1P3L|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
           Containing Histone 'sin' Mutants
 pdb|1P3L|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
           Containing Histone 'sin' Mutants
 pdb|1P3M|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
           Containing Histone 'sin' Mutants
 pdb|1P3M|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
           Containing Histone 'sin' Mutants
 pdb|1P3O|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
           Containing Histone 'sin' Mutants
 pdb|1P3O|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
           Containing Histone 'sin' Mutants
 pdb|1P3P|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
           Containing Histone 'sin' Mutants
 pdb|1P3P|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
           Containing Histone 'sin' Mutants
          Length = 129

 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/54 (83%), Positives = 47/54 (87%)

Query: 17  GNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKT 70
           GNAARDNKK +IIPRH+QLAVRNDEEL KLL  VTIA GGVLPNI  VLLPKKT
Sbjct: 67  GNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKT 120


>pdb|1EQZ|A Chain A, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
           Resolution
 pdb|1EQZ|E Chain E, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
           Resolution
 pdb|1HQ3|A Chain A, Crystal Structure Of The Histone-Core-Octamer In
           KclPHOSPHATE
 pdb|1HQ3|E Chain E, Crystal Structure Of The Histone-Core-Octamer In
           KclPHOSPHATE
 pdb|1TZY|A Chain A, Crystal Structure Of The Core-Histone Octamer To 1.90
           Angstrom Resolution
 pdb|1TZY|E Chain E, Crystal Structure Of The Core-Histone Octamer To 1.90
           Angstrom Resolution
 pdb|2ARO|A Chain A, Crystal Structure Of The Native Histone Octamer To 2.1
           Angstrom Resolution, Crystalised In The Presence Of
           S-nitrosoglutathione
 pdb|2ARO|E Chain E, Crystal Structure Of The Native Histone Octamer To 2.1
           Angstrom Resolution, Crystalised In The Presence Of
           S-nitrosoglutathione
          Length = 129

 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/56 (78%), Positives = 48/56 (85%)

Query: 17  GNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTNE 72
           GNAARDNKK +IIPRH+QLA+RNDEEL KLL  VTIA GGVLPNI  VLLPKKT+ 
Sbjct: 68  GNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDS 123


>pdb|3KWQ|C Chain C, Structural Characterization Of H3k56q Nucleosomes And
           Nucleo Arrays
 pdb|3KWQ|G Chain G, Structural Characterization Of H3k56q Nucleosomes And
           Nucleo Arrays
          Length = 107

 Score = 89.7 bits (221), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/54 (83%), Positives = 47/54 (87%)

Query: 17  GNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKT 70
           GNAARDNKK +IIPRH+QLAVRNDEEL KLL  VTIA GGVLPNI  VLLPKKT
Sbjct: 54  GNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKT 107


>pdb|2CV5|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
 pdb|2CV5|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
          Length = 130

 Score = 89.7 bits (221), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 44/54 (81%), Positives = 47/54 (87%)

Query: 17  GNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKT 70
           GNAARDNKK +IIPRH+QLA+RNDEEL KLL  VTIA GGVLPNI  VLLPKKT
Sbjct: 68  GNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121


>pdb|3A6N|C Chain C, The Nucleosome Containing A Testis-Specific Histone
           Variant, Human H3t
 pdb|3A6N|G Chain G, The Nucleosome Containing A Testis-Specific Histone
           Variant, Human H3t
 pdb|3AFA|C Chain C, The Human Nucleosome Structure
 pdb|3AFA|G Chain G, The Human Nucleosome Structure
 pdb|3AV1|C Chain C, The Human Nucleosome Structure Containing The Histone
           Variant H3.2
 pdb|3AV1|G Chain G, The Human Nucleosome Structure Containing The Histone
           Variant H3.2
 pdb|3AV2|C Chain C, The Human Nucleosome Structure Containing The Histone
           Variant H3.3
 pdb|3AV2|G Chain G, The Human Nucleosome Structure Containing The Histone
           Variant H3.3
 pdb|3AN2|C Chain C, The Structure Of The Centromeric Nucleosome Containing
           Cenp-A
 pdb|3AN2|G Chain G, The Structure Of The Centromeric Nucleosome Containing
           Cenp-A
 pdb|3AYW|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
           Containing H3k56q Mutation
 pdb|3AYW|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
           Containing H3k56q Mutation
 pdb|3AZE|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
           Containing H3k64q Mutation
 pdb|3AZE|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
           Containing H3k64q Mutation
 pdb|3AZF|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
           Containing H3k79q Mutation
 pdb|3AZF|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
           Containing H3k79q Mutation
 pdb|3AZG|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
           Containing H3k115q Mutation
 pdb|3AZG|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
           Containing H3k115q Mutation
 pdb|3AZH|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
           Containing H3k122q Mutation
 pdb|3AZH|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
           Containing H3k122q Mutation
 pdb|3AZI|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
           Containing H4k31q Mutation
 pdb|3AZI|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
           Containing H4k31q Mutation
 pdb|3AZJ|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
           Containing H4k44q Mutation
 pdb|3AZJ|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
           Containing H4k44q Mutation
 pdb|3AZK|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
           Containing H4k59q Mutation
 pdb|3AZK|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
           Containing H4k59q Mutation
 pdb|3AZL|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
           Containing H4k77q Mutation
 pdb|3AZL|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
           Containing H4k77q Mutation
 pdb|3AZM|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
           Containing H4k79q Mutation
 pdb|3AZM|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
           Containing H4k79q Mutation
 pdb|3AZN|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
           Containing H4k91q Mutation
 pdb|3AZN|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
           Containing H4k91q Mutation
          Length = 133

 Score = 89.4 bits (220), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 44/54 (81%), Positives = 47/54 (87%)

Query: 17  GNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKT 70
           GNAARDNKK +IIPRH+QLA+RNDEEL KLL  VTIA GGVLPNI  VLLPKKT
Sbjct: 71  GNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 124


>pdb|2F8N|K Chain K, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
           Nucleosomes
          Length = 149

 Score = 89.4 bits (220), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/54 (81%), Positives = 47/54 (87%)

Query: 17  GNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKT 70
           GNAARDNKK +IIPRH+QLA+RNDEEL KLL  VTIA GGVLPNI  VLLPKKT
Sbjct: 87  GNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 140


>pdb|1S32|C Chain C, Molecular Recognition Of The Nucleosomal 'supergroove'
 pdb|1S32|G Chain G, Molecular Recognition Of The Nucleosomal 'supergroove'
 pdb|2NZD|C Chain C, Nucleosome Core Particle Containing 145 Bp Of Dna
 pdb|2NZD|G Chain G, Nucleosome Core Particle Containing 145 Bp Of Dna
 pdb|3KUY|C Chain C, Dna Stretching In The Nucleosome Facilitates Alkylation By
           An Intercalating Antitumor Agent
 pdb|3KUY|G Chain G, Dna Stretching In The Nucleosome Facilitates Alkylation By
           An Intercalating Antitumor Agent
 pdb|3MGP|C Chain C, Binding Of Cobalt Ions To The Nucleosome Core Particle
 pdb|3MGP|G Chain G, Binding Of Cobalt Ions To The Nucleosome Core Particle
 pdb|3MGQ|C Chain C, Binding Of Nickel Ions To The Nucleosome Core Particle
 pdb|3MGQ|G Chain G, Binding Of Nickel Ions To The Nucleosome Core Particle
 pdb|3MGR|C Chain C, Binding Of Rubidium Ions To The Nucleosome Core Particle
 pdb|3MGR|G Chain G, Binding Of Rubidium Ions To The Nucleosome Core Particle
 pdb|3MGS|C Chain C, Binding Of Cesium Ions To The Nucleosome Core Particle
 pdb|3MGS|G Chain G, Binding Of Cesium Ions To The Nucleosome Core Particle
 pdb|3LZ0|C Chain C, Crystal Structure Of Nucleosome Core Particle Composed Of
           The Widom 601 Dna Sequence (Orientation 1)
 pdb|3LZ0|G Chain G, Crystal Structure Of Nucleosome Core Particle Composed Of
           The Widom 601 Dna Sequence (Orientation 1)
 pdb|3LZ1|C Chain C, Crystal Structure Of Nucleosome Core Particle Composed Of
           The Widom 601 Dna Sequence (Orientation 2)
 pdb|3LZ1|G Chain G, Crystal Structure Of Nucleosome Core Particle Composed Of
           The Widom 601 Dna Sequence (Orientation 2)
 pdb|3MNN|C Chain C, A Ruthenium Antitumour Agent Forms Specific Histone
           Protein Adducts In The Nucleosome Core
 pdb|3MNN|G Chain G, A Ruthenium Antitumour Agent Forms Specific Histone
           Protein Adducts In The Nucleosome Core
          Length = 119

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/53 (83%), Positives = 46/53 (86%)

Query: 17  GNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKK 69
           GNAARDNKK +IIPRH+QLAVRNDEEL KLL  VTIA GGVLPNI  VLLPKK
Sbjct: 67  GNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKK 119


>pdb|1AOI|C Chain C, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
           And 146 Bp Long Dna Fragment
 pdb|1AOI|G Chain G, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
           And 146 Bp Long Dna Fragment
          Length = 116

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/53 (83%), Positives = 46/53 (86%)

Query: 17  GNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKK 69
           GNAARDNKK +IIPRH+QLAVRNDEEL KLL  VTIA GGVLPNI  VLLPKK
Sbjct: 64  GNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKK 116


>pdb|1ZLA|C Chain C, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
           Peptide Bound To The Nucleosomal Core
 pdb|1ZLA|G Chain G, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
           Peptide Bound To The Nucleosomal Core
          Length = 129

 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 43/54 (79%), Positives = 45/54 (83%)

Query: 17  GNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKT 70
           GN  RDNKK +IIPRH+QLAVRNDEEL KLL  VTIA GGVLPNI  VLLPKKT
Sbjct: 67  GNWERDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKT 120


>pdb|1ID3|C Chain C, Crystal Structure Of The Yeast Nucleosome Core Particle
           Reveals Fundamental Differences In Inter-Nucleosome
           Interactions
 pdb|1ID3|G Chain G, Crystal Structure Of The Yeast Nucleosome Core Particle
           Reveals Fundamental Differences In Inter-Nucleosome
           Interactions
          Length = 131

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/54 (75%), Positives = 47/54 (87%)

Query: 17  GNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKT 70
           GNAARDNKK +IIPRH+QLA+RND+EL KLL  VTIA GGVLPNI+  LLPKK+
Sbjct: 68  GNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKS 121


>pdb|1KX3|C Chain C, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
           At 2.0 A Resolution
 pdb|1KX3|G Chain G, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
           At 2.0 A Resolution
 pdb|1KX4|C Chain C, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
           At 2.6 A Resolution
 pdb|1KX4|G Chain G, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
           At 2.6 A Resolution
 pdb|1KX5|C Chain C, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
           At 1.9 A Resolution
 pdb|1KX5|G Chain G, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
           At 1.9 A Resolution
 pdb|3B6F|C Chain C, Nucleosome Core Particle Treated With Cisplatin
 pdb|3B6F|G Chain G, Nucleosome Core Particle Treated With Cisplatin
 pdb|3B6G|C Chain C, Nucleosome Core Particle Treated With Oxaliplatin
 pdb|3B6G|G Chain G, Nucleosome Core Particle Treated With Oxaliplatin
 pdb|3LEL|C Chain C, Structural Insight Into The Sequence-Dependence Of
           Nucleosom Positioning
 pdb|3LEL|G Chain G, Structural Insight Into The Sequence-Dependence Of
           Nucleosom Positioning
 pdb|3LEL|M Chain M, Structural Insight Into The Sequence-Dependence Of
           Nucleosom Positioning
 pdb|3LEL|Q Chain Q, Structural Insight Into The Sequence-Dependence Of
           Nucleosom Positioning
 pdb|3O62|C Chain C, Nucleosome Core Particle Modified With A Cisplatin
           1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
 pdb|3O62|G Chain G, Nucleosome Core Particle Modified With A Cisplatin
           1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
          Length = 128

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/51 (82%), Positives = 44/51 (86%)

Query: 17  GNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLP 67
           GNAARDNKK +IIPRH+QLAVRNDEEL KLL  VTIA GGVLPNI  VLLP
Sbjct: 67  GNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLP 117


>pdb|1U35|C Chain C, Crystal Structure Of The Nucleosome Core Particle
           Containing The Histone Domain Of Macroh2a
 pdb|1U35|G Chain G, Crystal Structure Of The Nucleosome Core Particle
           Containing The Histone Domain Of Macroh2a
 pdb|2F8N|G Chain G, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
           Nucleosomes
          Length = 120

 Score = 79.3 bits (194), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 39/52 (75%), Positives = 44/52 (84%)

Query: 18  NAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKK 69
           NAARDNKK ++ PRH+ LAV NDEEL +LL GVTIASGGVLPNI+P LL KK
Sbjct: 66  NAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKK 117


>pdb|1HIO|A Chain A, Histone Octamer (Chicken), Chromosomal Protein, Alpha
          Carbons Only
          Length = 95

 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/43 (81%), Positives = 38/43 (88%)

Query: 17 GNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLP 59
          GNAARDNKK +IIPRH+QLA+RNDEEL KLL  VTIA GGVLP
Sbjct: 53 GNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLP 95


>pdb|2XQL|A Chain A, Fitting Of The H2a-H2b Histones In The Electron
          Microscopy Map Of The Complex Nucleoplasmin:h2a-H2b
          Histones (1:5).
 pdb|2XQL|C Chain C, Fitting Of The H2a-H2b Histones In The Electron
          Microscopy Map Of The Complex Nucleoplasmin:h2a-H2b
          Histones (1:5).
 pdb|2XQL|E Chain E, Fitting Of The H2a-H2b Histones In The Electron
          Microscopy Map Of The Complex Nucleoplasmin:h2a-H2b
          Histones (1:5).
 pdb|2XQL|G Chain G, Fitting Of The H2a-H2b Histones In The Electron
          Microscopy Map Of The Complex Nucleoplasmin:h2a-H2b
          Histones (1:5).
 pdb|2XQL|I Chain I, Fitting Of The H2a-H2b Histones In The Electron
          Microscopy Map Of The Complex Nucleoplasmin:h2a-H2b
          Histones (1:5)
          Length = 91

 Score = 65.1 bits (157), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 31/39 (79%), Positives = 34/39 (87%)

Query: 17 GNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASG 55
          GNAARDNKK +IIPRH+QLA+RNDEEL KLL  VTIA G
Sbjct: 53 GNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQG 91


>pdb|1F66|C Chain C, 2.6 A Crystal Structure Of A Nucleosome Core Particle
           Containing The Variant Histone H2a.Z
 pdb|1F66|G Chain G, 2.6 A Crystal Structure Of A Nucleosome Core Particle
           Containing The Variant Histone H2a.Z
          Length = 128

 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 42/58 (72%), Gaps = 1/58 (1%)

Query: 17  GNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTNERV 74
           GNA++D K K+I PRH+QLA+R DEEL  L+   TIA GGV+P+I+  L+ KK  ++ 
Sbjct: 71  GNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGQQKT 127


>pdb|2JSS|A Chain A, Nmr Structure Of Chaperone Chz1 Complexed With Histone
           H2a.Z-H2b
          Length = 192

 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 36/45 (80%), Gaps = 1/45 (2%)

Query: 17  GNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNI 61
           GNAA+D K K+I PRH+QLA+R D+EL  L+   TIASGGVLP+I
Sbjct: 149 GNAAKDLKVKRITPRHLQLAIRGDDELDSLIRA-TIASGGVLPHI 192


>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic
           Asymmetry Of Eukaryotic Cytosolic Chaperonins
 pdb|3P9D|K Chain K, The Crystal Structure Of Yeast Cct Reveals Intrinsic
           Asymmetry Of Eukaryotic Cytosolic Chaperonins
 pdb|3P9E|CC Chain c, The Crystal Structure Of Yeast Cct Reveals Intrinsic
           Asymmetry Of Eukaryotic Cytosolic Chaperonins
 pdb|3P9E|KK Chain k, The Crystal Structure Of Yeast Cct Reveals Intrinsic
           Asymmetry Of Eukaryotic Cytosolic Chaperonins
 pdb|4D8Q|C Chain C, Molecular Architecture Of The Eukaryotic Chaperonin
           TricCCT DERIVED By A Combination Of Chemical
           Crosslinking And Mass-Spectrometry, Xl- Ms
 pdb|4D8Q|K Chain K, Molecular Architecture Of The Eukaryotic Chaperonin
           TricCCT DERIVED By A Combination Of Chemical
           Crosslinking And Mass-Spectrometry, Xl- Ms
 pdb|4D8R|CC Chain c, Molecular Architecture Of The Eukaryotic Chaperonin
           TricCCT DERIVED By A Combination Of Chemical
           Crosslinking And Mass-Spectrometry, Xl- Ms
 pdb|4D8R|KK Chain k, Molecular Architecture Of The Eukaryotic Chaperonin
           TricCCT DERIVED By A Combination Of Chemical
           Crosslinking And Mass-Spectrometry, Xl- Ms
          Length = 590

 Score = 26.6 bits (57), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 33  VQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPK 68
           ++L+   DEE+G   T V I +G +L    P L+ K
Sbjct: 79  LELSRTQDEEVGDGTTTVIILAGEILAQCAPYLIEK 114


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.135    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,761,686
Number of Sequences: 62578
Number of extensions: 54749
Number of successful extensions: 77
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 52
Number of HSP's gapped (non-prelim): 25
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)