Query 034549
Match_columns 91
No_of_seqs 107 out of 421
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 06:03:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034549.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034549hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nqb_C Histone H2A; nucleosome 100.0 7.7E-33 2.6E-37 191.3 5.4 73 1-73 50-122 (123)
2 1id3_C Histone H2A.1; nucleoso 100.0 1.1E-32 3.7E-37 192.3 5.6 74 1-74 52-125 (131)
3 1tzy_A Histone H2A-IV; histone 100.0 1.1E-32 3.6E-37 192.0 5.3 73 1-73 52-124 (129)
4 2f8n_G Core histone macro-H2A. 100.0 1.4E-32 4.7E-37 189.4 5.4 71 1-71 49-119 (120)
5 1f66_C Histone H2A.Z; nucleoso 100.0 1.4E-32 4.7E-37 191.2 4.3 72 1-73 55-126 (128)
6 2f8n_K Histone H2A type 1; nuc 100.0 2.7E-32 9.2E-37 194.2 4.7 74 1-74 71-144 (149)
7 2jss_A Chimera of histone H2B. 99.9 1E-25 3.5E-30 164.2 4.1 60 1-61 133-192 (192)
8 3ksy_A SOS-1, SON of sevenless 99.6 4.5E-17 1.6E-21 140.0 2.2 63 1-64 130-192 (1049)
9 1jfi_A Transcription regulator 99.3 1.1E-12 3.8E-17 86.7 2.6 48 1-48 38-85 (98)
10 1n1j_B NF-YC; histone-like PAI 98.9 5.6E-10 1.9E-14 73.3 3.3 48 1-48 46-93 (97)
11 4g92_C HAPE; transcription fac 98.9 5.3E-10 1.8E-14 76.0 3.0 47 1-47 68-114 (119)
12 2byk_A Chrac-16; nucleosome sl 98.3 2.2E-07 7.7E-12 64.9 2.2 47 1-47 46-93 (140)
13 1tzy_D Histone H4-VI; histone- 98.3 2.6E-07 8.8E-12 61.1 2.0 40 1-40 55-94 (103)
14 2yfw_B Histone H4, H4; cell cy 98.3 2.8E-07 9.6E-12 61.0 2.0 41 1-41 55-95 (103)
15 1f1e_A Histone fold protein; a 97.7 1.2E-05 4.2E-10 57.0 1.9 40 1-40 108-147 (154)
16 1ku5_A HPHA, archaeal histon; 97.4 0.00011 3.6E-09 45.0 2.7 38 2-39 33-70 (70)
17 1b67_A Protein (histone HMFA); 97.0 0.00039 1.3E-08 42.0 2.8 38 2-39 29-66 (68)
18 1taf_B TFIID TBP associated fa 96.4 0.0022 7.7E-08 40.0 2.9 38 1-38 32-69 (70)
19 2hue_C Histone H4; mini beta s 95.5 0.0092 3.1E-07 37.7 2.8 40 1-40 36-75 (84)
20 1id3_B Histone H4; nucleosome 95.2 0.011 3.6E-07 38.9 2.5 40 1-40 54-93 (102)
21 3v9r_A MHF1, uncharacterized p 94.8 0.032 1.1E-06 36.2 3.9 42 8-49 48-89 (90)
22 1k6k_A ATP-dependent CLP prote 94.3 0.028 9.6E-07 36.6 2.7 40 9-48 6-45 (143)
23 4dra_A Centromere protein S; D 92.7 0.11 3.7E-06 35.1 3.5 44 5-48 60-103 (113)
24 3b0c_W CENP-W, centromere prot 92.6 0.071 2.4E-06 32.8 2.4 30 9-38 39-68 (76)
25 1f1e_A Histone fold protein; a 92.5 0.069 2.4E-06 37.6 2.5 37 1-37 31-67 (154)
26 1n1j_A NF-YB; histone-like PAI 92.1 0.095 3.3E-06 33.2 2.6 36 3-38 38-73 (93)
27 2nqb_D Histone H2B; nucleosome 92.1 0.084 2.9E-06 36.2 2.5 36 3-38 62-97 (123)
28 1khy_A CLPB protein; alpha hel 91.9 0.069 2.4E-06 34.8 1.8 33 9-41 10-42 (148)
29 1tzy_B Histone H2B; histone-fo 91.9 0.091 3.1E-06 36.2 2.5 36 3-38 65-100 (126)
30 3vh5_A CENP-S; histone fold, c 91.8 0.14 4.9E-06 35.7 3.4 45 5-49 52-96 (140)
31 3b0b_B CENP-S, centromere prot 91.7 0.17 5.8E-06 33.7 3.5 43 6-48 53-95 (107)
32 2y1q_A CLPC N-domain, negative 91.3 0.053 1.8E-06 35.5 0.7 40 9-48 10-51 (150)
33 3fes_A ATP-dependent CLP endop 90.9 0.054 1.8E-06 35.9 0.5 40 9-48 12-53 (145)
34 3fh2_A Probable ATP-dependent 90.8 0.095 3.2E-06 34.6 1.6 40 9-48 11-52 (146)
35 1taf_A TFIID TBP associated fa 90.5 0.19 6.3E-06 31.0 2.6 36 4-39 30-65 (68)
36 3b0c_T CENP-T, centromere prot 89.6 0.098 3.3E-06 34.7 0.9 40 2-41 34-73 (111)
37 3fes_A ATP-dependent CLP endop 89.4 0.099 3.4E-06 34.6 0.8 40 9-48 86-127 (145)
38 3fh2_A Probable ATP-dependent 89.3 0.15 5E-06 33.7 1.6 40 9-48 86-127 (146)
39 3zri_A CLPB protein, CLPV; cha 88.9 0.16 5.6E-06 35.3 1.7 39 10-48 30-70 (171)
40 3zri_A CLPB protein, CLPV; cha 87.3 0.27 9.3E-06 34.1 2.0 33 9-41 103-136 (171)
41 1k6k_A ATP-dependent CLP prote 87.3 0.26 8.9E-06 31.9 1.8 40 9-48 84-125 (143)
42 1khy_A CLPB protein; alpha hel 86.5 0.47 1.6E-05 30.7 2.7 40 9-48 87-127 (148)
43 1bh9_B TAFII28; histone fold, 85.0 0.59 2E-05 30.0 2.5 37 2-38 43-80 (89)
44 2byk_B Chrac-14; nucleosome sl 84.9 0.31 1.1E-05 33.0 1.2 38 4-41 40-77 (128)
45 1r6b_X CLPA protein; AAA+, N-t 83.8 0.65 2.2E-05 37.8 2.9 40 9-48 6-45 (758)
46 2jss_A Chimera of histone H2B. 83.4 0.63 2.1E-05 33.2 2.4 36 4-39 29-68 (192)
47 2y1q_A CLPC N-domain, negative 83.3 0.47 1.6E-05 30.9 1.5 33 9-41 84-116 (150)
48 3nqj_A Histone H3-like centrom 82.8 0.88 3E-05 28.9 2.6 34 5-38 40-73 (82)
49 2hue_B Histone H3; mini beta s 82.0 0.93 3.2E-05 28.4 2.5 33 6-38 39-71 (77)
50 2yfv_A Histone H3-like centrom 77.4 1.5 5.2E-05 28.7 2.5 33 6-38 66-98 (100)
51 3nqu_A Histone H3-like centrom 77.1 1.5 5.1E-05 30.5 2.5 35 4-38 97-131 (140)
52 3r45_A Histone H3-like centrom 76.8 1.4 4.6E-05 31.3 2.2 35 4-38 113-147 (156)
53 2ly8_A Budding yeast chaperone 75.7 1.9 6.4E-05 29.2 2.6 38 2-39 74-111 (121)
54 1tzy_C Histone H3; histone-fol 74.5 1.9 6.6E-05 29.7 2.5 34 5-38 97-130 (136)
55 1jfi_B DR1 protein, transcript 74.3 1.9 6.5E-05 30.9 2.5 36 10-46 51-86 (179)
56 3pxg_A Negative regulator of g 69.3 1.8 6.3E-05 33.6 1.6 40 9-48 10-51 (468)
57 3pxg_A Negative regulator of g 68.2 1.3 4.6E-05 34.4 0.6 34 9-42 84-117 (468)
58 2l5a_A Histone H3-like centrom 67.5 3.2 0.00011 31.0 2.5 39 2-40 188-226 (235)
59 3pxi_A Negative regulator of g 65.1 1.7 5.8E-05 35.6 0.6 40 9-48 10-51 (758)
60 1qvr_A CLPB protein; coiled co 62.2 2.9 0.0001 34.8 1.6 33 9-41 10-42 (854)
61 3pxi_A Negative regulator of g 60.5 2.3 7.8E-05 34.8 0.6 34 9-42 84-117 (758)
62 1r6b_X CLPA protein; AAA+, N-t 58.6 4.1 0.00014 33.1 1.8 34 9-42 84-117 (758)
63 2vxz_A Pyrsv_GP04; viral prote 51.1 13 0.00043 26.5 3.1 42 8-49 75-116 (165)
64 1f6v_A DNA transposition prote 45.2 1.5 5.2E-05 28.5 -2.3 30 9-39 49-78 (91)
65 1qvr_A CLPB protein; coiled co 39.2 8.1 0.00028 32.2 0.6 33 9-41 87-119 (854)
66 1h3o_B Transcription initiatio 26.9 49 0.0017 20.3 2.6 31 8-38 39-69 (76)
67 2l5a_A Histone H3-like centrom 26.1 55 0.0019 24.3 3.2 29 7-36 52-80 (235)
68 1wwi_A Hypothetical protein TT 23.9 78 0.0027 22.0 3.5 32 4-35 31-62 (148)
69 3b0b_C CENP-X, centromere prot 21.7 74 0.0025 19.7 2.8 33 3-35 39-71 (81)
No 1
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=99.97 E-value=7.7e-33 Score=191.27 Aligned_cols=73 Identities=81% Similarity=1.182 Sum_probs=68.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCccccccchhhcccCcHHHHhhhcCceecCCcccCCCCccCCCCccccc
Q 034549 1 MAAVLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTNER 73 (91)
Q Consensus 1 LAAVLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~nD~EL~~Lf~~~tIa~gGV~P~i~~~ll~kK~~~~ 73 (91)
||||||||++||||+|+|+|++++++||+|+||++||+||+||++||+++||++|||+||||++|++||++++
T Consensus 50 LaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~Ll~~vtia~ggvlp~i~~~l~~k~~~~~ 122 (123)
T 2nqb_C 50 LAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKK 122 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGSSCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhccHHHHHHhcCceeCCCCcCCCccHHHcCcccccC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999987643
No 2
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.97 E-value=1.1e-32 Score=192.35 Aligned_cols=74 Identities=73% Similarity=1.069 Sum_probs=71.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCccccccchhhcccCcHHHHhhhcCceecCCcccCCCCccCCCCcccccc
Q 034549 1 MAAVLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTNERV 74 (91)
Q Consensus 1 LAAVLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~nD~EL~~Lf~~~tIa~gGV~P~i~~~ll~kK~~~~~ 74 (91)
|+||||||++||||+|+|+|++++++||+|+||++||+||+||++||+++||++|||+||||++|++||++++.
T Consensus 52 LaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~nDeEL~~Ll~~vtIa~ggvlP~i~~~l~~k~~~~~~ 125 (131)
T 1id3_C 52 LTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAKAT 125 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTCHHHHHHTTTEEETTCCCCCCCCGGGSCCSCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhccHHHHHHhcCceecCCccCCCccHHHcCccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999886543
No 3
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=99.97 E-value=1.1e-32 Score=191.99 Aligned_cols=73 Identities=78% Similarity=1.123 Sum_probs=67.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCccccccchhhcccCcHHHHhhhcCceecCCcccCCCCccCCCCccccc
Q 034549 1 MAAVLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTNER 73 (91)
Q Consensus 1 LAAVLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~nD~EL~~Lf~~~tIa~gGV~P~i~~~ll~kK~~~~ 73 (91)
|+||||||++||||+|+|+|++++++||+|+||++||+||+||++||+++||++|||+||||++|++||++++
T Consensus 52 LaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~L~~~vtIa~ggvlP~i~~~l~~k~~~~~ 124 (129)
T 1tzy_A 52 LAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSH 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHHHHhCCCeecCCCcCCCCCHHHcCcccccc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999988654
No 4
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=99.97 E-value=1.4e-32 Score=189.36 Aligned_cols=71 Identities=75% Similarity=1.042 Sum_probs=67.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCccccccchhhcccCcHHHHhhhcCceecCCcccCCCCccCCCCccc
Q 034549 1 MAAVLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTN 71 (91)
Q Consensus 1 LAAVLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~nD~EL~~Lf~~~tIa~gGV~P~i~~~ll~kK~~ 71 (91)
|+||||||++||||+|+|+|++++++||+|+||++||+||+||++||+++||++|||+||||++|++||++
T Consensus 49 LaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~nDeEL~~Ll~~vtia~ggv~p~i~~~l~~k~~~ 119 (120)
T 2f8n_G 49 MAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRG 119 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGSCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhcCHHHHHHhCCceECCCCcCCCcCHHHcCCccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999998864
No 5
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=99.97 E-value=1.4e-32 Score=191.19 Aligned_cols=72 Identities=60% Similarity=0.908 Sum_probs=63.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCccccccchhhcccCcHHHHhhhcCceecCCcccCCCCccCCCCccccc
Q 034549 1 MAAVLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTNER 73 (91)
Q Consensus 1 LAAVLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~nD~EL~~Lf~~~tIa~gGV~P~i~~~ll~kK~~~~ 73 (91)
||||||||++||||+|+|+|++++++||+|+||++||+||+||++||+ +||++|||+||||++|++||++++
T Consensus 55 LaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~nDeEL~~Ll~-~tia~ggv~P~i~~~l~~k~~~~~ 126 (128)
T 1f66_C 55 SAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGQQK 126 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHSHHHHHHCC-SEETTCCCCCCCCGGGC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHhhhhc-ceecCCccCCCCCHHhcCcccccC
Confidence 689999999999999999999999999999999999999999999996 599999999999999999988653
No 6
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=99.97 E-value=2.7e-32 Score=194.24 Aligned_cols=74 Identities=77% Similarity=1.093 Sum_probs=67.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCccccccchhhcccCcHHHHhhhcCceecCCcccCCCCccCCCCcccccc
Q 034549 1 MAAVLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTNERV 74 (91)
Q Consensus 1 LAAVLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~nD~EL~~Lf~~~tIa~gGV~P~i~~~ll~kK~~~~~ 74 (91)
||||||||++||||+|+|+|++++++||+|+||++||+||+||++||+++||++|||+|+||++|++||++++.
T Consensus 71 LAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~nDeEL~~Ll~~vtIa~gGVlP~i~~~l~~k~~~~~~ 144 (149)
T 2f8n_K 71 LAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHH 144 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHTTTEEETTCCCCCCCCGGGSCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhccHHHHHHhcCceEcCCCCCCCccHHHcCccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999987554
No 7
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=99.91 E-value=1e-25 Score=164.24 Aligned_cols=60 Identities=70% Similarity=1.037 Sum_probs=58.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCccccccchhhcccCcHHHHhhhcCceecCCcccCCC
Q 034549 1 MAAVLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNI 61 (91)
Q Consensus 1 LAAVLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~nD~EL~~Lf~~~tIa~gGV~P~i 61 (91)
|+||||||++||||+|+|.|++++++||+|+||++||+||+||++||+ +||++|||+|||
T Consensus 133 LaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~eL~~L~~-~ti~~ggv~p~i 192 (192)
T 2jss_A 133 LTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIR-ATIASGGVLPHI 192 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSHHHHHHHC-SCCTTTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccHHHHHHHh-hhhcCCCcCCCC
Confidence 689999999999999999999999999999999999999999999996 699999999997
No 8
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.63 E-value=4.5e-17 Score=139.96 Aligned_cols=63 Identities=25% Similarity=0.432 Sum_probs=47.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCccccccchhhcccCcHHHHhhhcCceecCCcccCCCCcc
Q 034549 1 MAAVLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPV 64 (91)
Q Consensus 1 LAAVLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~nD~EL~~Lf~~~tIa~gGV~P~i~~~ 64 (91)
||||||||++||||||||+|+++++.||+||||++|++||+||+++|+.. ..++|++|.....
T Consensus 130 ~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~d~eL~~l~~~d-ee~~~~lp~~~~~ 192 (1049)
T 3ksy_A 130 IVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKVLMDMFHQD-VEDINILSLTDEE 192 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHHCSSHHHHCC----------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccCCHHHHHHHhhc-cccccCCCCcccc
Confidence 68999999999999999999999999999999999999999999999764 4567888865543
No 9
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.28 E-value=1.1e-12 Score=86.66 Aligned_cols=48 Identities=13% Similarity=0.230 Sum_probs=33.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCccccccchhhcccCcHHHHhhhc
Q 034549 1 MAAVLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVRNDEELGKLLT 48 (91)
Q Consensus 1 LAAVLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~nD~EL~~Lf~ 48 (91)
+++++||++.|++++|+|.|+++++++|+|+||.+||++|++|+.|+.
T Consensus 38 la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~d 85 (98)
T 1jfi_A 38 ISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANKA 85 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHHh
Confidence 478999999999999999999999999999999999999999999983
No 10
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.92 E-value=5.6e-10 Score=73.28 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCccccccchhhcccCcHHHHhhhc
Q 034549 1 MAAVLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVRNDEELGKLLT 48 (91)
Q Consensus 1 LAAVLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~nD~EL~~Lf~ 48 (91)
++.++||++.++++.|++.|++.++++|+|+||..||++|++|+.|..
T Consensus 46 laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~d 93 (97)
T 1n1j_B 46 FAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLID 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHHh
Confidence 478999999999999999999999999999999999999999998873
No 11
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=98.91 E-value=5.3e-10 Score=76.03 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=43.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCccccccchhhcccCcHHHHhhh
Q 034549 1 MAAVLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVRNDEELGKLL 47 (91)
Q Consensus 1 LAAVLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~nD~EL~~Lf 47 (91)
++.++||++.++++.|++.|+++++++|+|+||..||++|++|+-|.
T Consensus 68 la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL~ 114 (119)
T 4g92_C 68 FAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFLI 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHHH
Confidence 47899999999999999999999999999999999999999997543
No 12
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=98.30 E-value=2.2e-07 Score=64.88 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=44.1
Q ss_pred ChHHHHHHHHHHHHHHHHHH-HhcCCccccccchhhcccCcHHHHhhh
Q 034549 1 MAAVLEYLAAEVLELAGNAA-RDNKKKKIIPRHVQLAVRNDEELGKLL 47 (91)
Q Consensus 1 LAAVLEYLtaEILELA~n~A-~~~kk~rItPrhi~lAI~nD~EL~~Lf 47 (91)
++.++||++.++++.|++.| ...++++|+++||..||+++++|+-|.
T Consensus 46 iakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~ 93 (140)
T 2byk_A 46 MTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLL 93 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHh
Confidence 46789999999999999999 999999999999999999999988877
No 13
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=98.28 E-value=2.6e-07 Score=61.14 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=37.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCccccccchhhcccCc
Q 034549 1 MAAVLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVRND 40 (91)
Q Consensus 1 LAAVLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~nD 40 (91)
|+.||||++.||++.|.+.|++.+++.|+|+||.+|+++.
T Consensus 55 l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 55 TRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 4789999999999999999999999999999999999865
No 14
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=98.26 E-value=2.8e-07 Score=61.02 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCccccccchhhcccCcH
Q 034549 1 MAAVLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVRNDE 41 (91)
Q Consensus 1 LAAVLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~nD~ 41 (91)
|+.||||++.||++.|.+.|++.+++.|+|+||.+|+++..
T Consensus 55 l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 55 VRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC
Confidence 47899999999999999999999999999999999999653
No 15
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=97.69 E-value=1.2e-05 Score=56.99 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=37.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCccccccchhhcccCc
Q 034549 1 MAAVLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVRND 40 (91)
Q Consensus 1 LAAVLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~nD 40 (91)
|+.||||++.+|.+.|.+.|+..+|+.|+|+||.+|++++
T Consensus 108 l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 108 YNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 4689999999999999999999999999999999999875
No 16
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=97.36 E-value=0.00011 Score=45.04 Aligned_cols=38 Identities=29% Similarity=0.351 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCccccccchhhcccC
Q 034549 2 AAVLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVRN 39 (91)
Q Consensus 2 AAVLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~n 39 (91)
..++|+.+.+|++-|...|+..+|+.|+|+||.+|+++
T Consensus 33 ~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 33 AEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 56889999999999999999999999999999999875
No 17
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=97.04 E-value=0.00039 Score=41.99 Aligned_cols=38 Identities=29% Similarity=0.335 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCccccccchhhcccC
Q 034549 2 AAVLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVRN 39 (91)
Q Consensus 2 AAVLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~n 39 (91)
+-++|++..++.+-|...|...+++.|+|+||++|++.
T Consensus 29 ~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 29 AKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 45788888999999999999999999999999999863
No 18
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=96.39 E-value=0.0022 Score=40.00 Aligned_cols=38 Identities=13% Similarity=0.276 Sum_probs=35.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCccccccchhhccc
Q 034549 1 MAAVLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVR 38 (91)
Q Consensus 1 LAAVLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~ 38 (91)
||--+||-..||++-|.+.++..+|+++|..||..|++
T Consensus 32 LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 32 LAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 46789999999999999999999999999999999875
No 19
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=95.49 E-value=0.0092 Score=37.69 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=36.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCccccccchhhcccCc
Q 034549 1 MAAVLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVRND 40 (91)
Q Consensus 1 LAAVLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~nD 40 (91)
|+.++||...+|+.-|...++..+++.|++.+|.+|++..
T Consensus 36 l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 36 TRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 3578999999999999999999999999999999999864
No 20
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=95.21 E-value=0.011 Score=38.92 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=36.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCccccccchhhcccCc
Q 034549 1 MAAVLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVRND 40 (91)
Q Consensus 1 LAAVLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~nD 40 (91)
|+.+|||...+|+.-|...|+..+++.|++.+|.+|++..
T Consensus 54 l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 54 VRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 3578999999999999999999999999999999998854
No 21
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=94.82 E-value=0.032 Score=36.23 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhcCCccccccchhhcccCcHHHHhhhcC
Q 034549 8 LAAEVLELAGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTG 49 (91)
Q Consensus 8 LtaEILELA~n~A~~~kk~rItPrhi~lAI~nD~EL~~Lf~~ 49 (91)
.+.+|..=+...|+..||+-|++.+|.++++.++.|.+++.+
T Consensus 48 ~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L~~~l~~ 89 (90)
T 3v9r_A 48 QLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDLQERVTQ 89 (90)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHHHHHhhc
Confidence 334555556677888999999999999999999999988754
No 22
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=94.26 E-value=0.028 Score=36.63 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhcCCccccccchhhcccCcHHHHhhhc
Q 034549 9 AAEVLELAGNAARDNKKKKIIPRHVQLAVRNDEELGKLLT 48 (91)
Q Consensus 9 taEILELA~n~A~~~kk~rItPrhi~lAI~nD~EL~~Lf~ 48 (91)
+.++|+.|-+.|+..+...|+|+||-+|+-+|++...+|.
T Consensus 6 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~iL~ 45 (143)
T 1k6k_A 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (143)
T ss_dssp HHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCchHHHHHH
Confidence 3578999999999999999999999999998877766665
No 23
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=92.67 E-value=0.11 Score=35.11 Aligned_cols=44 Identities=23% Similarity=0.156 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccccchhhcccCcHHHHhhhc
Q 034549 5 LEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVRNDEELGKLLT 48 (91)
Q Consensus 5 LEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~nD~EL~~Lf~ 48 (91)
++..+.+|..=+...|+..||+-|++.+|.++++.++.|.++++
T Consensus 60 ~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L~~~l~ 103 (113)
T 4dra_A 60 TFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYIT 103 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHHHHHHH
Confidence 33444566666677888899999999999999999999988775
No 24
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=92.61 E-value=0.071 Score=32.80 Aligned_cols=30 Identities=33% Similarity=0.329 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhcCCccccccchhhccc
Q 034549 9 AAEVLELAGNAARDNKKKKIIPRHVQLAVR 38 (91)
Q Consensus 9 taEILELA~n~A~~~kk~rItPrhi~lAI~ 38 (91)
...|-.-|.+.|+..+++-|+++||..|+.
T Consensus 39 i~~la~eA~~~a~~~~rKTI~~~dI~~A~~ 68 (76)
T 3b0c_W 39 LHRLAEEARTNAFENKSKIIKPEHTIAAAK 68 (76)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 344555566777788999999999999975
No 25
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=92.48 E-value=0.069 Score=37.57 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=34.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCccccccchhhcc
Q 034549 1 MAAVLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAV 37 (91)
Q Consensus 1 LAAVLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI 37 (91)
|+.+++.+..+|..-|.+.|+..+++.|++.||.+|+
T Consensus 31 l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~ 67 (154)
T 1f1e_A 31 IYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALA 67 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 3568899999999999999999999999999999998
No 26
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=92.14 E-value=0.095 Score=33.20 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccccchhhccc
Q 034549 3 AVLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVR 38 (91)
Q Consensus 3 AVLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~ 38 (91)
-+.|.+...+.+-|...|...+|+-|++.||..|++
T Consensus 38 ~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 38 ECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 355666677778888889999999999999999997
No 27
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=92.10 E-value=0.084 Score=36.20 Aligned_cols=36 Identities=28% Similarity=0.344 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccccchhhccc
Q 034549 3 AVLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVR 38 (91)
Q Consensus 3 AVLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~ 38 (91)
..++.+...|-.-|+..++.+++.-||+|+||.|++
T Consensus 62 SfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 97 (123)
T 2nqb_D 62 SFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVR 97 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHH
Confidence 345566666777788888899999999999999996
No 28
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=91.92 E-value=0.069 Score=34.81 Aligned_cols=33 Identities=27% Similarity=0.190 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhcCCccccccchhhcccCcH
Q 034549 9 AAEVLELAGNAARDNKKKKIIPRHVQLAVRNDE 41 (91)
Q Consensus 9 taEILELA~n~A~~~kk~rItPrhi~lAI~nD~ 41 (91)
+.++|+.|.+.|...+...|+|+||-+|+-+|+
T Consensus 10 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 10 FQLALADAQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 357999999999999999999999999998765
No 29
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=91.92 E-value=0.091 Score=36.17 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccccchhhccc
Q 034549 3 AVLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVR 38 (91)
Q Consensus 3 AVLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~ 38 (91)
..++.+...|-.-|+..++.+++.-||+|+||.|++
T Consensus 65 SfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 100 (126)
T 1tzy_B 65 SFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVR 100 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 345566666777788888899999999999999996
No 30
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=91.83 E-value=0.14 Score=35.72 Aligned_cols=45 Identities=24% Similarity=0.172 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccccchhhcccCcHHHHhhhcC
Q 034549 5 LEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTG 49 (91)
Q Consensus 5 LEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~nD~EL~~Lf~~ 49 (91)
++..+.+|..=+...|+..+|+-|++.+|.|+++.++.|.+++..
T Consensus 52 ~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~~ 96 (140)
T 3vh5_A 52 TFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQ 96 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHHH
Confidence 333444566666778888999999999999999999999888764
No 31
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=91.69 E-value=0.17 Score=33.68 Aligned_cols=43 Identities=23% Similarity=0.183 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccccchhhcccCcHHHHhhhc
Q 034549 6 EYLAAEVLELAGNAARDNKKKKIIPRHVQLAVRNDEELGKLLT 48 (91)
Q Consensus 6 EYLtaEILELA~n~A~~~kk~rItPrhi~lAI~nD~EL~~Lf~ 48 (91)
+..+.+|..=+...|+..||+.|++.+|.+|++.++.|...+.
T Consensus 53 ~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l~~~l~ 95 (107)
T 3b0b_B 53 FRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYIT 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHHHHHHH
Confidence 3334567777778888899999999999999999998876654
No 32
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=91.28 E-value=0.053 Score=35.54 Aligned_cols=40 Identities=30% Similarity=0.318 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhcCCccccccchhhcccCcHH--HHhhhc
Q 034549 9 AAEVLELAGNAARDNKKKKIIPRHVQLAVRNDEE--LGKLLT 48 (91)
Q Consensus 9 taEILELA~n~A~~~kk~rItPrhi~lAI~nD~E--L~~Lf~ 48 (91)
+.++|+.|.+.|...+...|+|+||-+|+-++++ ...+|.
T Consensus 10 ~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~ 51 (150)
T 2y1q_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQ 51 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHH
Confidence 3578999999999999999999999999976543 455553
No 33
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=90.91 E-value=0.054 Score=35.89 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhcCCccccccchhhcccCcH--HHHhhhc
Q 034549 9 AAEVLELAGNAARDNKKKKIIPRHVQLAVRNDE--ELGKLLT 48 (91)
Q Consensus 9 taEILELA~n~A~~~kk~rItPrhi~lAI~nD~--EL~~Lf~ 48 (91)
+.++|+.|.+.|+..+...|+|.||-+|+-.|+ ....+|.
T Consensus 12 a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~ 53 (145)
T 3fes_A 12 AKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLS 53 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHH
Confidence 357999999999999999999999999998754 3455554
No 34
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=90.84 E-value=0.095 Score=34.64 Aligned_cols=40 Identities=28% Similarity=0.267 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhcCCccccccchhhcccCc--HHHHhhhc
Q 034549 9 AAEVLELAGNAARDNKKKKIIPRHVQLAVRND--EELGKLLT 48 (91)
Q Consensus 9 taEILELA~n~A~~~kk~rItPrhi~lAI~nD--~EL~~Lf~ 48 (91)
+.++|+.|.+.|+..+...|+|.||-+|+-.| .....+|.
T Consensus 11 ~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~ 52 (146)
T 3fh2_A 11 ARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALE 52 (146)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHH
Confidence 35799999999999999999999999999865 34555554
No 35
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=90.49 E-value=0.19 Score=30.95 Aligned_cols=36 Identities=25% Similarity=0.152 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccchhhcccC
Q 034549 4 VLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVRN 39 (91)
Q Consensus 4 VLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~n 39 (91)
.++-.+.+|+.-|...|...+++.|+..+|.+||+.
T Consensus 30 ~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 30 FTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 455567899999999999999999999999999974
No 36
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=89.62 E-value=0.098 Score=34.69 Aligned_cols=40 Identities=13% Similarity=0.094 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCccccccchhhcccCcH
Q 034549 2 AAVLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVRNDE 41 (91)
Q Consensus 2 AAVLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~nD~ 41 (91)
..+++....+|..-|...|+..+++-|++.+|.+|++...
T Consensus 34 ~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g 73 (111)
T 3b0c_T 34 EKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQG 73 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCC
Confidence 3466677778888899999999999999999999998643
No 37
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=89.40 E-value=0.099 Score=34.58 Aligned_cols=40 Identities=30% Similarity=0.390 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhcCCccccccchhhcccCcH--HHHhhhc
Q 034549 9 AAEVLELAGNAARDNKKKKIIPRHVQLAVRNDE--ELGKLLT 48 (91)
Q Consensus 9 taEILELA~n~A~~~kk~rItPrhi~lAI~nD~--EL~~Lf~ 48 (91)
+.++|+.|...|+..+...|++.||-+|+-.|. ....+|.
T Consensus 86 ~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~ 127 (145)
T 3fes_A 86 SKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILN 127 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHH
Confidence 457999999999999999999999999998654 3556664
No 38
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=89.30 E-value=0.15 Score=33.71 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhcCCccccccchhhcccCcH--HHHhhhc
Q 034549 9 AAEVLELAGNAARDNKKKKIIPRHVQLAVRNDE--ELGKLLT 48 (91)
Q Consensus 9 taEILELA~n~A~~~kk~rItPrhi~lAI~nD~--EL~~Lf~ 48 (91)
+.++|+.|...|+..+...|++.||-+|+-.|. ....+|.
T Consensus 86 ~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~ 127 (146)
T 3fh2_A 86 AKKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLV 127 (146)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHH
Confidence 357999999999999999999999999998654 4566664
No 39
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=88.89 E-value=0.16 Score=35.28 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhcCCccccccchhhcccCcH--HHHhhhc
Q 034549 10 AEVLELAGNAARDNKKKKIIPRHVQLAVRNDE--ELGKLLT 48 (91)
Q Consensus 10 aEILELA~n~A~~~kk~rItPrhi~lAI~nD~--EL~~Lf~ 48 (91)
.++|+.|.+.|+..+...|+|.||-+|+-.|+ ....+|.
T Consensus 30 ~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~ 70 (171)
T 3zri_A 30 KLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLK 70 (171)
T ss_dssp HHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHH
Confidence 47999999999999999999999999998764 3455553
No 40
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=87.33 E-value=0.27 Score=34.14 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHH-hcCCccccccchhhcccCcH
Q 034549 9 AAEVLELAGNAAR-DNKKKKIIPRHVQLAVRNDE 41 (91)
Q Consensus 9 taEILELA~n~A~-~~kk~rItPrhi~lAI~nD~ 41 (91)
+.++|+.|...|+ ..+...|++.||-+|+-.|+
T Consensus 103 l~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~ 136 (171)
T 3zri_A 103 LVELLQEAWLLSSTELEQAELRSGAIFLAALTRA 136 (171)
T ss_dssp HHHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhCh
Confidence 3579999999999 99999999999999999887
No 41
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=87.32 E-value=0.26 Score=31.89 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhcCCccccccchhhcccCcHH--HHhhhc
Q 034549 9 AAEVLELAGNAARDNKKKKIIPRHVQLAVRNDEE--LGKLLT 48 (91)
Q Consensus 9 taEILELA~n~A~~~kk~rItPrhi~lAI~nD~E--L~~Lf~ 48 (91)
+.++|+.|...|+..+...|++.||-+|+-.|.+ ...++.
T Consensus 84 ~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL~ 125 (143)
T 1k6k_A 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLR 125 (143)
T ss_dssp HHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHHH
Confidence 4578999999999999999999999999987543 445553
No 42
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=86.46 E-value=0.47 Score=30.73 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhcCCccccccchhhcccC-cHHHHhhhc
Q 034549 9 AAEVLELAGNAARDNKKKKIIPRHVQLAVRN-DEELGKLLT 48 (91)
Q Consensus 9 taEILELA~n~A~~~kk~rItPrhi~lAI~n-D~EL~~Lf~ 48 (91)
..++|+.|...|+..+...|++.||-+|+-. |.....++.
T Consensus 87 ~~~vl~~A~~~a~~~~~~~i~~ehlLlall~~~~~~~~~L~ 127 (148)
T 1khy_A 87 LVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILK 127 (148)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHcCCcHHHHHHH
Confidence 4578999999999999999999999999985 444555554
No 43
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=84.99 E-value=0.59 Score=29.96 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcC-Cccccccchhhccc
Q 034549 2 AAVLEYLAAEVLELAGNAARDNK-KKKIIPRHVQLAVR 38 (91)
Q Consensus 2 AAVLEYLtaEILELA~n~A~~~k-k~rItPrhi~lAI~ 38 (91)
+++--.++.||.|.|..+....+ ..-|.|+||+-|.+
T Consensus 43 ~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~r 80 (89)
T 1bh9_B 43 SGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVR 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 34444567899999999888654 56999999998875
No 44
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=84.90 E-value=0.31 Score=32.97 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccchhhcccCcH
Q 034549 4 VLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVRNDE 41 (91)
Q Consensus 4 VLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~nD~ 41 (91)
+.|.++..|-.-|.+.|...+|+.|++.||..|+....
T Consensus 40 a~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~ 77 (128)
T 2byk_B 40 AASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELD 77 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcC
Confidence 44555566666677888889999999999999998753
No 45
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=83.84 E-value=0.65 Score=37.78 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhcCCccccccchhhcccCcHHHHhhhc
Q 034549 9 AAEVLELAGNAARDNKKKKIIPRHVQLAVRNDEELGKLLT 48 (91)
Q Consensus 9 taEILELA~n~A~~~kk~rItPrhi~lAI~nD~EL~~Lf~ 48 (91)
+.++|+.|.+.|+..+...|+|+||.+|+-.|.+...++.
T Consensus 6 a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~iL~ 45 (758)
T 1r6b_X 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (758)
T ss_dssp HHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCcHHHHHHH
Confidence 3578999999999999999999999999999887776664
No 46
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=83.42 E-value=0.63 Score=33.20 Aligned_cols=36 Identities=36% Similarity=0.450 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHH----HHHHHHhcCCccccccchhhcccC
Q 034549 4 VLEYLAAEVLEL----AGNAARDNKKKKIIPRHVQLAVRN 39 (91)
Q Consensus 4 VLEYLtaEILEL----A~n~A~~~kk~rItPrhi~lAI~n 39 (91)
+|.++...++|- |...++.++++.||+++|+.|++-
T Consensus 29 ~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl 68 (192)
T 2jss_A 29 ILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL 68 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 444555544443 444455678889999999999973
No 47
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=83.26 E-value=0.47 Score=30.86 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhcCCccccccchhhcccCcH
Q 034549 9 AAEVLELAGNAARDNKKKKIIPRHVQLAVRNDE 41 (91)
Q Consensus 9 taEILELA~n~A~~~kk~rItPrhi~lAI~nD~ 41 (91)
..++|+.|...|+..+...|++.||-+|+-.|.
T Consensus 84 ~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~ 116 (150)
T 2y1q_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREG 116 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCC
Confidence 457899999999999999999999999998653
No 48
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=82.76 E-value=0.88 Score=28.88 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccccchhhccc
Q 034549 5 LEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVR 38 (91)
Q Consensus 5 LEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~ 38 (91)
.|...-.+.|-+..-|...++..|+|++|++|.+
T Consensus 40 ~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 40 AEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 3555567888898888889999999999999864
No 49
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=81.96 E-value=0.93 Score=28.44 Aligned_cols=33 Identities=30% Similarity=0.392 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccccchhhccc
Q 034549 6 EYLAAEVLELAGNAARDNKKKKIIPRHVQLAVR 38 (91)
Q Consensus 6 EYLtaEILELA~n~A~~~kk~rItPrhi~lAI~ 38 (91)
|...-++.|-+..-|...++.-|+|++|++|.+
T Consensus 39 Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~r 71 (77)
T 2hue_B 39 EAYLVALFEDTNLCAIHAKRVTIMPKDIQLARR 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHH
Confidence 433456788888888999999999999999964
No 50
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=77.38 E-value=1.5 Score=28.66 Aligned_cols=33 Identities=30% Similarity=0.306 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccccchhhccc
Q 034549 6 EYLAAEVLELAGNAARDNKKKKIIPRHVQLAVR 38 (91)
Q Consensus 6 EYLtaEILELA~n~A~~~kk~rItPrhi~lAI~ 38 (91)
|...-.+.|-+..-|...++..|+|++|+||.+
T Consensus 66 EayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 66 EAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 434456888898889999999999999999864
No 51
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=77.10 E-value=1.5 Score=30.48 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccchhhccc
Q 034549 4 VLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVR 38 (91)
Q Consensus 4 VLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~ 38 (91)
+.|...-.+.|-+..-|...++..|+|++|+||.+
T Consensus 97 AaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArr 131 (140)
T 3nqu_A 97 AAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 131 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 34555567889898888889999999999999864
No 52
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=76.81 E-value=1.4 Score=31.25 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccchhhccc
Q 034549 4 VLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVR 38 (91)
Q Consensus 4 VLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~ 38 (91)
+.|...-.+.|-|...|...++..|+|++|+||.+
T Consensus 113 AaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArr 147 (156)
T 3r45_A 113 AAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 147 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 34555677889898888888999999999999975
No 53
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=75.68 E-value=1.9 Score=29.21 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCccccccchhhcccC
Q 034549 2 AAVLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVRN 39 (91)
Q Consensus 2 AAVLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~n 39 (91)
..|||-...+|+.-|...+...+++-||..+|.+|++.
T Consensus 74 r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr 111 (121)
T 2ly8_A 74 RAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 46788888899999999999999999999999998753
No 54
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=74.45 E-value=1.9 Score=29.66 Aligned_cols=34 Identities=29% Similarity=0.352 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccccchhhccc
Q 034549 5 LEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVR 38 (91)
Q Consensus 5 LEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~ 38 (91)
.|...-++.|-+...|...++.-|+|++|+||.+
T Consensus 97 aEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 130 (136)
T 1tzy_C 97 SEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHH
Confidence 3444466888898889999999999999999964
No 55
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=74.28 E-value=1.9 Score=30.91 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhcCCccccccchhhcccCcHHHHhh
Q 034549 10 AEVLELAGNAARDNKKKKIIPRHVQLAVRNDEELGKL 46 (91)
Q Consensus 10 aEILELA~n~A~~~kk~rItPrhi~lAI~nD~EL~~L 46 (91)
..|--.|...|...+|+-|++.||..|+. +.++..+
T Consensus 51 ~~LtseA~e~a~~~~RKTI~~eDVl~Al~-~LgF~~f 86 (179)
T 1jfi_B 51 HLISSEANEICNKSEKKTISPEHVIQALE-SLGFGSY 86 (179)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHH-HHTTGGG
T ss_pred HHHHHHHHHHHHHcCCCcCCHHHHHHHHH-hcChHHH
Confidence 33444455667788999999999999998 3344433
No 56
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=69.26 E-value=1.8 Score=33.58 Aligned_cols=40 Identities=28% Similarity=0.266 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhcCCccccccchhhcccCc--HHHHhhhc
Q 034549 9 AAEVLELAGNAARDNKKKKIIPRHVQLAVRND--EELGKLLT 48 (91)
Q Consensus 9 taEILELA~n~A~~~kk~rItPrhi~lAI~nD--~EL~~Lf~ 48 (91)
+.++|+.|.+.|+..+...|+|.||-+|+-.+ .....+|.
T Consensus 10 a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL~ 51 (468)
T 3pxg_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQ 51 (468)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHH
Confidence 46789999999999999999999999999764 34555553
No 57
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=68.21 E-value=1.3 Score=34.36 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhcCCccccccchhhcccCcHH
Q 034549 9 AAEVLELAGNAARDNKKKKIIPRHVQLAVRNDEE 42 (91)
Q Consensus 9 taEILELA~n~A~~~kk~rItPrhi~lAI~nD~E 42 (91)
..++|+.|...|...+...|.+.||-+|+-.|.+
T Consensus 84 ~~~vL~~A~~~A~~~g~~~I~teHLLlaLl~~~~ 117 (468)
T 3pxg_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117 (468)
T ss_dssp HHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHhccc
Confidence 3578999999999999999999999999986643
No 58
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=67.54 E-value=3.2 Score=31.02 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCccccccchhhcccCc
Q 034549 2 AAVLEYLAAEVLELAGNAARDNKKKKIIPRHVQLAVRND 40 (91)
Q Consensus 2 AAVLEYLtaEILELA~n~A~~~kk~rItPrhi~lAI~nD 40 (91)
..|||....+|+.-|...+...+++-||+.+|.+|+..-
T Consensus 188 r~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 188 RAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence 468888889999999999999999999999999998743
No 59
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=65.08 E-value=1.7 Score=35.56 Aligned_cols=40 Identities=28% Similarity=0.266 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhcCCccccccchhhcccCc--HHHHhhhc
Q 034549 9 AAEVLELAGNAARDNKKKKIIPRHVQLAVRND--EELGKLLT 48 (91)
Q Consensus 9 taEILELA~n~A~~~kk~rItPrhi~lAI~nD--~EL~~Lf~ 48 (91)
+.++|+.|-+.|+..+...|+|.||-+|+-.+ .....++.
T Consensus 10 a~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~ 51 (758)
T 3pxi_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQ 51 (758)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHH
Confidence 35789999999999999999999999999754 34445553
No 60
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=62.20 E-value=2.9 Score=34.82 Aligned_cols=33 Identities=30% Similarity=0.223 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhcCCccccccchhhcccCcH
Q 034549 9 AAEVLELAGNAARDNKKKKIIPRHVQLAVRNDE 41 (91)
Q Consensus 9 taEILELA~n~A~~~kk~rItPrhi~lAI~nD~ 41 (91)
+.++|+.|.+.|+..+...|+|.||.+|+-.+.
T Consensus 10 a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~ 42 (854)
T 1qvr_A 10 AREALAQAQVLAQRMKHQAIDLPHLWAVLLKDE 42 (854)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 357899999999999999999999999997654
No 61
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=60.50 E-value=2.3 Score=34.78 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhcCCccccccchhhcccCcHH
Q 034549 9 AAEVLELAGNAARDNKKKKIIPRHVQLAVRNDEE 42 (91)
Q Consensus 9 taEILELA~n~A~~~kk~rItPrhi~lAI~nD~E 42 (91)
..++|+.|...|...+...|++.||-+|+-.|.+
T Consensus 84 ~~~vl~~A~~~A~~~~~~~I~~ehlLlall~~~~ 117 (758)
T 3pxi_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117 (758)
T ss_dssp HHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhcCC
Confidence 3579999999999999999999999999986543
No 62
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=58.61 E-value=4.1 Score=33.05 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhcCCccccccchhhcccCcHH
Q 034549 9 AAEVLELAGNAARDNKKKKIIPRHVQLAVRNDEE 42 (91)
Q Consensus 9 taEILELA~n~A~~~kk~rItPrhi~lAI~nD~E 42 (91)
..++|+.|...|+..+...|++.||-+|+-.+.+
T Consensus 84 ~~~vl~~A~~~a~~~~~~~I~~ehlLlall~~~~ 117 (758)
T 1r6b_X 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQE 117 (758)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHcCCCEeeHHHHHHHHhcccc
Confidence 4579999999999999999999999999987653
No 63
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=51.14 E-value=13 Score=26.53 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHhcCCccccccchhhcccCcHHHHhhhcC
Q 034549 8 LAAEVLELAGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTG 49 (91)
Q Consensus 8 LtaEILELA~n~A~~~kk~rItPrhi~lAI~nD~EL~~Lf~~ 49 (91)
...+|++--.-.-+..+.+.|+|..+..-|..|.+-..+|..
T Consensus 75 kV~dilrel~~~l~s~gvk~i~p~~l~~li~~d~~~~~~~a~ 116 (165)
T 2vxz_A 75 LVDGMIREVERLVTTNKLKFISPPRLHDLIIKDPQARKFFSS 116 (165)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCeeeCcHHHHHHHHhCHHHHHHHHH
Confidence 556777666666778999999999999999999999999975
No 64
>1f6v_A DNA transposition protein; MU phage, recombination, ATPase, DNA binding, high salt, solution structure, DNA binding protein; HET: DNA; NMR {Enterobacteria phage MU} SCOP: a.49.1.1
Probab=45.20 E-value=1.5 Score=28.48 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhcCCccccccchhhcccC
Q 034549 9 AAEVLELAGNAARDNKKKKIIPRHVQLAVRN 39 (91)
Q Consensus 9 taEILELA~n~A~~~kk~rItPrhi~lAI~n 39 (91)
....|.||...|...+.. |+..||..|-.+
T Consensus 49 ltktLrLA~m~A~G~g~~-i~~~~I~~A~~e 78 (91)
T 1f6v_A 49 LNHSLRLAAMTAHGKGER-VNEDYLRQAFRE 78 (91)
T ss_dssp HHHHHGGGTCTTCTTSCC-SSHHHHHHHHTS
T ss_pred HHHHHHHHHHHhccCCCc-CCHHHHHHHHHH
Confidence 356788998888877776 999999999874
No 65
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=39.16 E-value=8.1 Score=32.17 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhcCCccccccchhhcccCcH
Q 034549 9 AAEVLELAGNAARDNKKKKIIPRHVQLAVRNDE 41 (91)
Q Consensus 9 taEILELA~n~A~~~kk~rItPrhi~lAI~nD~ 41 (91)
+.++|+.|...|+..+...|++.||-+|+-.+.
T Consensus 87 ~~~vL~~A~~~a~~~g~~~I~~ehlLlall~~~ 119 (854)
T 1qvr_A 87 LSGALNRAEGLMEELKDRYVAVDTLVLALAEAT 119 (854)
T ss_dssp HHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCcEeeHHHHHHHHHhcc
Confidence 357899999999999999999999999998654
No 66
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=26.86 E-value=49 Score=20.34 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhcCCccccccchhhccc
Q 034549 8 LAAEVLELAGNAARDNKKKKIIPRHVQLAVR 38 (91)
Q Consensus 8 LtaEILELA~n~A~~~kk~rItPrhi~lAI~ 38 (91)
++..|++.|+..|+..+...+.+++|++.+.
T Consensus 39 FV~~V~~~ac~lAKhR~s~~le~kDvql~Le 69 (76)
T 1h3o_B 39 FIESVVTAACQLARHRKSSTLEVKDVQLHLE 69 (76)
T ss_dssp HHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 4467899999999999999999999988654
No 67
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=26.14 E-value=55 Score=24.31 Aligned_cols=29 Identities=34% Similarity=0.453 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhcCCccccccchhhc
Q 034549 7 YLAAEVLELAGNAARDNKKKKIIPRHVQLA 36 (91)
Q Consensus 7 YLtaEILELA~n~A~~~kk~rItPrhi~lA 36 (91)
||+ .++|-+.--|...++.-|.|++|+||
T Consensus 52 yLV-~LFEd~nLcaiHAkRVTim~kDiqLa 80 (235)
T 2l5a_A 52 YLV-GLLEHTNLLALHAKRITIMKKDMQLA 80 (235)
T ss_dssp HHH-HHHHHHHHHHHSTTTSGGGTTHHHHH
T ss_pred HHH-HHHhhhHHHHhcccccccchhhHHHH
Confidence 554 46788877777789999999999998
No 68
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=23.86 E-value=78 Score=21.98 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccchhh
Q 034549 4 VLEYLAAEVLELAGNAARDNKKKKIIPRHVQL 35 (91)
Q Consensus 4 VLEYLtaEILELA~n~A~~~kk~rItPrhi~l 35 (91)
+++-=...+|+.|-..|+.+++--|.|+||-+
T Consensus 31 ~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLPI 62 (148)
T 1wwi_A 31 FLRNKLYDLLAVAERNAKYNGRDLIFEPDLPI 62 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEECGGGSCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeccccCCc
Confidence 44555667899999999999999999999854
No 69
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=21.66 E-value=74 Score=19.65 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccccchhh
Q 034549 3 AVLEYLAAEVLELAGNAARDNKKKKIIPRHVQL 35 (91)
Q Consensus 3 AVLEYLtaEILELA~n~A~~~kk~rItPrhi~l 35 (91)
..|+-++.|.+..|...|...+...|...||.-
T Consensus 39 eyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEk 71 (81)
T 3b0b_C 39 ELLKVFVREAAARAARQAQAEDLEKVDIEHVEK 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHH
Confidence 345556677777777887777777888888754
Done!