BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034552
(91 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EO4|A Chain A, The Crystal Structure Of A Domain From Methanocaldococcus
Jannaschii Dsm 2661
pdb|3EO4|B Chain B, The Crystal Structure Of A Domain From Methanocaldococcus
Jannaschii Dsm 2661
pdb|3EO4|C Chain C, The Crystal Structure Of A Domain From Methanocaldococcus
Jannaschii Dsm 2661
pdb|3EO4|D Chain D, The Crystal Structure Of A Domain From Methanocaldococcus
Jannaschii Dsm 2661
Length = 164
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 2 VGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGE 61
VG VN+ + DN E+ I+I E GK + + +V +++ + ++N G A+I E
Sbjct: 78 VGSVNVSQLNTDN---PEIGILIGEFFLWGKHIGRHSVSLVLKW-LKNIGYKKAHARILE 133
Query: 62 SNGASLRLFQKLGFE 76
+N S++LF+ LGF+
Sbjct: 134 NNIRSIKLFESLGFK 148
>pdb|3TTH|A Chain A, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|B Chain B, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|C Chain C, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|D Chain D, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|E Chain E, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|F Chain F, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|G Chain G, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|H Chain H, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|I Chain I, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|J Chain J, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|K Chain K, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|L Chain L, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
Length = 170
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 23 MIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75
+I P GKG A +A + + YA +H + E N A+L +++K GF
Sbjct: 89 IIISPGEEGKGYATEATDLTVEYAFSILNLHKIYLLVDEDNPAALHIYRKSGF 141
>pdb|2FL4|A Chain A, The Crystal Structure Of The SpermineSPERMIDINE
ACETYLTRANSFERASE From Enterococcus Faecalis
Length = 149
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 31/52 (59%)
Query: 24 IAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75
+ + + +G+G K A ++M +E + + + ++N +++RL+Q+LGF
Sbjct: 77 LIDQRFQGQGYGKAACRLLMLKLIEKYQTNKLYLSVYDTNSSAIRLYQQLGF 128
>pdb|3DR8|A Chain A, Structure Of Ynca, A Putative Acetyltransferase From
Salmonella Typhimurium With Its Cofactor Acetyl-Coa
pdb|3DR8|B Chain B, Structure Of Ynca, A Putative Acetyltransferase From
Salmonella Typhimurium With Its Cofactor Acetyl-Coa
pdb|3DR6|A Chain A, Structure Of Ynca, A Putative Acetyltransferase From
Salmonella Typhimurium
pdb|3DR6|B Chain B, Structure Of Ynca, A Putative Acetyltransferase From
Salmonella Typhimurium
pdb|3DR6|C Chain C, Structure Of Ynca, A Putative Acetyltransferase From
Salmonella Typhimurium
Length = 174
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 26 EPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75
P +GKGL + +L + G HV A I N AS+RL LGF
Sbjct: 91 HPAHQGKGLGRK-LLSRLIDEARRCGKHVXVAGIESQNAASIRLHHSLGF 139
>pdb|2JLM|A Chain A, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
pdb|2JLM|B Chain B, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
pdb|2JLM|C Chain C, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
pdb|2JLM|D Chain D, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
pdb|2JLM|E Chain E, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
pdb|2JLM|F Chain F, Structure Of A Putative Acetyltransferase (Aciad1637) From
Acinetobacter Baylyi Adp1
Length = 182
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 30 RGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75
RG GL+K + ++ AVE+ +HV I +N AS++L QKLGF
Sbjct: 103 RGLGLSKHLMNELIKRAVES-EVHVMVGCIDATNVASIQLHQKLGF 147
>pdb|2J8M|A Chain A, Structure Of P. Aeruginosa Acetyltransferase Pa4866
pdb|2J8M|B Chain B, Structure Of P. Aeruginosa Acetyltransferase Pa4866
pdb|2J8N|A Chain A, Structure Of P. Aeruginosa Acetyltransferase Pa4866 Solved
At Room Temperature
pdb|2J8N|B Chain B, Structure Of P. Aeruginosa Acetyltransferase Pa4866 Solved
At Room Temperature
pdb|2J8R|A Chain A, Structure Of P. Aeruginosa Acetyltransferase Pa4866 Solved
In Complex With L-Methionine Sulfoximine
pdb|2J8R|B Chain B, Structure Of P. Aeruginosa Acetyltransferase Pa4866 Solved
In Complex With L-Methionine Sulfoximine
Length = 172
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 30 RGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 76
RGKGL + ++ A G+HV A I N AS+ L ++LGFE
Sbjct: 95 RGKGLGVQLLQALIERARAQ-GLHVMVAAIESGNAASIGLHRRLGFE 140
>pdb|1VHS|A Chain A, Crystal Structure Of A Putative Phosphinothricin N-
Acetyltransferase
pdb|1VHS|B Chain B, Crystal Structure Of A Putative Phosphinothricin N-
Acetyltransferase
Length = 175
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 18 AEVEIMIAEPKSRGKGLAKDAVLMMMAYAV-ENFGIHVFRAKIGESNGASLRLFQKLGF 75
AEV I I E RGKG+ + L+ A + N GI A I N SL+LF+K GF
Sbjct: 83 AEVSIYIDE-ACRGKGVG--SYLLQEALRIAPNLGIRSLXAFIFGHNKPSLKLFEKHGF 138
>pdb|1YR0|A Chain A, Crystal Structure Of Phosphinothricin Acetyltransferase
From Agrobacterium Tumefaciens
pdb|1YR0|B Chain B, Crystal Structure Of Phosphinothricin Acetyltransferase
From Agrobacterium Tumefaciens
pdb|1YR0|C Chain C, Crystal Structure Of Phosphinothricin Acetyltransferase
From Agrobacterium Tumefaciens
pdb|1YR0|D Chain D, Crystal Structure Of Phosphinothricin Acetyltransferase
From Agrobacterium Tumefaciens
Length = 175
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 29 SRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS-YSEI 83
+RG G+ K ++ +A N +HV A I N AS+RL + LGF + +SE+
Sbjct: 95 ARGHGIGKRLXQALIDHAGGN-DVHVLIAAIEAENTASIRLHESLGFRVVGRFSEV 149
>pdb|3PGP|A Chain A, Crystal Structure Of Pa4794 - Gnat Superfamily Protein In
Complex With Accoa
Length = 162
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 23 MIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82
M+ P +RG G+A+ + +M A E + + + +N A L L+ +LG++ + +E
Sbjct: 83 MMVAPAARGLGVARYLIGVMENLAREQYKARLMKISCFNANAAGLLLYTQLGYQPRAIAE 142
>pdb|1YVO|A Chain A, Hypothetical Acetyltransferase From P.Aeruginosa Pa01
pdb|1YVO|B Chain B, Hypothetical Acetyltransferase From P.Aeruginosa Pa01
Length = 172
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 30 RGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 76
RGKGL + ++ A G+HV A I N AS+ L ++LGFE
Sbjct: 95 RGKGLGVQLLQALIERARAQ-GLHVXVAAIESGNAASIGLHRRLGFE 140
>pdb|2BL1|A Chain A, Crystal Structure Of A Putative Phosphinothricin
Acetyltransferase (Pa4866) From Pseudomonas Aeruginosa
Pac1
Length = 172
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 30 RGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 76
RGKGL + ++ A G+HV A I N AS+ L ++LGFE
Sbjct: 95 RGKGLGVQLLQALIERARAQ-GLHVXVAAIESGNAASIGLHRRLGFE 140
>pdb|3EC4|A Chain A, Crystal Structure Of Putative Acetyltransferase From The
Gnat Family (yp_497011.1) From Novosphingobium
Aromaticivorans Dsm 12444 At 1.80 A Resolution
pdb|3EC4|B Chain B, Crystal Structure Of Putative Acetyltransferase From The
Gnat Family (yp_497011.1) From Novosphingobium
Aromaticivorans Dsm 12444 At 1.80 A Resolution
Length = 228
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 76
LAEV + P+ RG+GLA + ++A + + SN +++RL++ LGF
Sbjct: 157 LAEVSGVCTWPEYRGRGLAARLIRKVIAGXAARGEVPYLHSYA--SNASAIRLYESLGFR 214
>pdb|3KKW|A Chain A, Crystal Structure Of His-Tagged Form Of Pa4794 Protein
Length = 182
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 23 MIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82
M+ P +RG G+A+ + +M A E + + + +N A L L+ +LG++ + +E
Sbjct: 103 MMVAPAARGLGVARYLIGVMENLAREQYKARLMKISCFNANAAGLLLYTQLGYQPRAIAE 162
>pdb|1S3Z|A Chain A, Aminoglycoside N-Acetyltransferase Aac(6')-Iy In Complex
With Coa And Ribostamycin
pdb|1S3Z|B Chain B, Aminoglycoside N-Acetyltransferase Aac(6')-Iy In Complex
With Coa And Ribostamycin
pdb|1S5K|A Chain A, Aminoglycoside N-Acetyltransferase Aac(6')-Iy In Complex
With Coa And N-Terminal His(6)-Tag (Crystal Form 1)
pdb|1S5K|B Chain B, Aminoglycoside N-Acetyltransferase Aac(6')-Iy In Complex
With Coa And N-Terminal His(6)-Tag (Crystal Form 1)
pdb|1S60|A Chain A, Aminoglycoside N-Acetyltransferase Aac(6')-Iy In Complex
With Coa And N-Terminal His(6)-Tag (Crystal Form 2)
pdb|2VBQ|A Chain A, Structure Of Aac(6')-Iy In Complex With Bisubstrate Analog
Coa-S-Monomethyl-Acetylneamine.
pdb|2VBQ|B Chain B, Structure Of Aac(6')-Iy In Complex With Bisubstrate Analog
Coa-S-Monomethyl-Acetylneamine
Length = 165
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 8 YMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASL 67
Y+N D+ + +E + P R +G+AK + + + N G + N S
Sbjct: 86 YVNGCDSSPVVFLEGIFVLPSFRQRGVAKQLIAAVQRWGT-NKGCREMASDTSPENTISQ 144
Query: 68 RLFQKLGFEDI 78
++ Q LGFE+
Sbjct: 145 KVHQALGFEET 155
>pdb|3FBU|A Chain A, The Crystal Structure Of The Acetyltransferase (gnat
Family) From Bacillus Anthracis
pdb|3FBU|B Chain B, The Crystal Structure Of The Acetyltransferase (gnat
Family) From Bacillus Anthracis
Length = 168
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 23 MIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82
+ PK KG A +A + Y + +H A N S R+ +K+G Y
Sbjct: 88 WVFNPKYFNKGYASEAAQATLKYGFKEMKLHRIIATCQPENTPSYRVMEKIGMRREGY-- 145
Query: 83 IFKEAV 88
FK+ +
Sbjct: 146 -FKKCI 150
>pdb|1Z4E|A Chain A, Crystal Structure Of Transcriptional Regulator From
Bacillus Halodurans C-125
pdb|1Z4E|B Chain B, Crystal Structure Of Transcriptional Regulator From
Bacillus Halodurans C-125
Length = 153
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 18 AEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 76
A +E + +RG+G+ V + A E G H+ + + +LR +++LGF+
Sbjct: 86 ATIEGVRTHSAARGQGIGSQLVCWAIERAKER-GCHLIQLTTDKQRPDALRFYEQLGFK 143
>pdb|1WWZ|A Chain A, Crystal Structure Of Ph1933 From Pyrococcus Horikoshii Ot3
pdb|1WWZ|B Chain B, Crystal Structure Of Ph1933 From Pyrococcus Horikoshii Ot3
Length = 159
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 23 MIAEPKSRGKGLAKDAVLMMMAY-AVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81
+ + K +GKG+ + ++ + + N I ++ +GE N ++ L++K GF+ + S
Sbjct: 91 FVVDKKFQGKGIGRKLLITCLDFLGKYNDTIELW---VGEKNYGAMNLYEKFGFKKVGKS 147
Query: 82 EIF 84
I+
Sbjct: 148 GIW 150
>pdb|2GE3|A Chain A, Crystal Structure Of Probable Acetyltransferase From
Agrobacterium Tumefaciens
pdb|2GE3|B Chain B, Crystal Structure Of Probable Acetyltransferase From
Agrobacterium Tumefaciens
pdb|2GE3|C Chain C, Crystal Structure Of Probable Acetyltransferase From
Agrobacterium Tumefaciens
pdb|2GE3|D Chain D, Crystal Structure Of Probable Acetyltransferase From
Agrobacterium Tumefaciens
Length = 170
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75
P R KGL + A E FG+H + N ++ L++K+GF
Sbjct: 95 PAYRNKGLGARLXRRTLDAAHE-FGLHRIELSVHADNARAIALYEKIGF 142
>pdb|1Y9K|A Chain A, Iaa Acetyltransferase From Bacillus Cereus Atcc 14579
pdb|1Y9K|B Chain B, Iaa Acetyltransferase From Bacillus Cereus Atcc 14579
pdb|1Y9K|C Chain C, Iaa Acetyltransferase From Bacillus Cereus Atcc 14579
pdb|1Y9K|D Chain D, Iaa Acetyltransferase From Bacillus Cereus Atcc 14579
Length = 157
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 30 RGKGLAKDAVLMMMAYAVEN---FGIHVFRAKIGESNGASLRLFQKLGFEDIS 79
+GKG+ K ++ +AVE +G G S+ + L L+QK GF S
Sbjct: 74 QGKGIGKK----LLRHAVETAKGYGXSKLEVGTGNSSVSQLALYQKCGFRIFS 122
>pdb|2I6C|A Chain A, Crystal Structure Of Putative Acetyltransferase (Gnat
Family) From Pseudomonas Aeruginosa Pao1
Length = 160
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82
P +RG G+A+ + + A E + + + +N A L L+ +LG++ + +E
Sbjct: 85 PAARGLGVARYLIGVXENLAREQYKARLXKISCFNANAAGLLLYTQLGYQPRAIAE 140
>pdb|4FD5|A Chain A, Crystal Structure Of Arylalkylamine N-Acetyltransferase 2
From Aedes Aegypti
pdb|4FD6|A Chain A, Crystal Structure Of Native Arylalkylamine
N-Acetyltransferase 2 From The Yellow Fever Mosquito,
Aedes Aegypti
Length = 222
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 19 EVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGA-SLRLFQKLGF-- 75
E+ I+ + + RGKGLAK + A++ G V + ++ GA S R+ LGF
Sbjct: 132 EIRILSVDSRFRGKGLAKKLIEKSEELALDR-GFQVMKT---DATGAFSQRVVSSLGFIT 187
Query: 76 -EDISYSEIFKE 86
+I+Y++ E
Sbjct: 188 KCEINYTDYLDE 199
>pdb|3OWC|A Chain A, Crystal Structure Of Gnat Superfamily Protein Pa2578 From
Pseudomonas Aeruginosa
pdb|3OWC|B Chain B, Crystal Structure Of Gnat Superfamily Protein Pa2578 From
Pseudomonas Aeruginosa
Length = 188
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 23 MIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77
++ P +RG+GL + ++A A + I + + N A+ L+++ GF +
Sbjct: 99 IVLAPSARGQGLGLPXLEALLAEAFADADIERVELNVYDWNAAARHLYRRAGFRE 153
>pdb|4F9J|A Chain A, Structure Of Escherichia Coli Pgab 42-655 In Complex With
Iron
pdb|4F9J|B Chain B, Structure Of Escherichia Coli Pgab 42-655 In Complex With
Iron
Length = 618
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 53 HVFRAKIGESNGASLRLFQKLGFE 76
HVF GE+NG ++ +KLG++
Sbjct: 209 HVFVWPYGEANGIAIEELKKLGYD 232
>pdb|4F9D|A Chain A, Structure Of Escherichia Coli Pgab 42-655 In Complex With
Nickel
pdb|4F9D|B Chain B, Structure Of Escherichia Coli Pgab 42-655 In Complex With
Nickel
Length = 618
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 53 HVFRAKIGESNGASLRLFQKLGFE 76
HVF GE+NG ++ +KLG++
Sbjct: 209 HVFVWPYGEANGIAIEELKKLGYD 232
>pdb|3VUS|A Chain A, Escherichia Coli Pgab N-terminal Domain
pdb|3VUS|B Chain B, Escherichia Coli Pgab N-terminal Domain
Length = 268
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 53 HVFRAKIGESNGASLRLFQKLGFE 76
HVF GE+NG ++ +KLG++
Sbjct: 205 HVFVWPYGEANGIAIEELKKLGYD 228
>pdb|4A3H|A Chain A, 2',4' Dinitrophenyl-2-Deoxy-2-Fluro-B-D-Cellobioside
Complex Of The Endoglucanase Cel5a From Bacillus
Agaradhaerens At 1.6 A Resolution
pdb|5A3H|A Chain A, 2-Deoxy-2-Fluro-B-D-CellobiosylENZYME INTERMEDIATE
COMPLEX Of The Endoglucanase Cel5a From Bacillus
Agaradhearans At 1.8 Angstroms Resolution
pdb|6A3H|A Chain A, 2-Deoxy-2-Fluro-B-D-CellotriosylENZYME INTERMEDIATE
COMPLEX OF THE Endoglucanase Cel5a From Bacillus
Agaradhearans At 1.6 Angstrom Resolution
pdb|7A3H|A Chain A, Native Endoglucanase Cel5a Catalytic Core Domain At 0.95
Angstroms Resolution
pdb|8A3H|A Chain A, Cellobiose-derived Imidazole Complex Of The
Endoglucanase Cel5a From Bacillus Agaradhaerens At 0.97
A Resolution
pdb|1HF6|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In The
Orthorhombic Crystal Form In Complex With Cellotriose
pdb|1H11|A Chain A, 2-Deoxy-2-Fluro-B-D-CellotriosylENZYME INTERMEDIATE
Complex Of The Endoglucanase Cel5a From Bacillus
Agaradhearans At 1.08 Angstrom Resolution
pdb|1H2J|A Chain A, Endoglucanase Cel5a In Complex With Unhydrolysed And
Covalently Linked 2,4-Dinitrophenyl-2-Deoxy-2-
Fluoro-Cellobioside At 1.15 A Resolution
pdb|1OCQ|A Chain A, Complex Of The Endoglucanase Cel5a From Bacillus
Agaradhearans At 1.08 Angstrom Resolution With
Cellobio-Derived Isofagomine
pdb|1W3K|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In
Complex With Cellobio Derived-tetrahydrooxazine
pdb|1W3L|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In
Complex With Cellotri Derived-Tetrahydrooxazine
Length = 303
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Query: 43 MAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKEAVDS 90
M + +++GI+VFRA + S+G + +D S E KEAV++
Sbjct: 49 MKWLRDDWGINVFRAAMYTSSGGYI--------DDPSVKEKVKEAVEA 88
>pdb|1QHZ|A Chain A, Native Tetragonal Structure Of The Endoglucanase Cel5a
From Bacillus Agaradhaerens
pdb|1QI0|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In The
Tetragonal Crystal Form In Complex With Cellobiose
pdb|1QI2|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In The
Tetragonal Crystal Form In Complex With
2',4'-Dinitrophenyl 2-Deoxy-2-Fluoro-B- D-Cellotrioside
pdb|1E5J|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In The
Tetragonal Crystal Form In Complex With
Methyl-4ii-S-Alpha-Cellobiosyl-4ii-Thio
Beta-Cellobioside
pdb|2V38|A Chain A, Family 5 Endoglucanase Cel5a From Bacillus Agaradhaerens
In Complex With Cellobio-Derived Noeuromycin
Length = 305
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Query: 43 MAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKEAVDS 90
M + +++GI+VFRA + S+G + +D S E KEAV++
Sbjct: 49 MKWLRDDWGINVFRAAMYTSSGGYI--------DDPSVKEKVKEAVEA 88
>pdb|1H5V|A Chain A, Thiopentasaccharide Complex Of The Endoglucanase Cel5a
From Bacillus Agaradharens At 1.1 A Resolution In The
Tetragonal Crystal Form
Length = 304
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Query: 43 MAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKEAVDS 90
M + +++GI+VFRA + S+G + +D S E KEAV++
Sbjct: 49 MKWLRDDWGINVFRAAMYTSSGGYI--------DDPSVKEKVKEAVEA 88
>pdb|1A3H|A Chain A, Endoglucanase Cel5a From Bacillus Agaradherans At 1.6a
Resolution
pdb|2A3H|A Chain A, Cellobiose Complex Of The Endoglucanase Cel5a From
Bacillus Agaradherans At 2.0 A Resolution
pdb|3A3H|A Chain A, Cellotriose Complex Of The Endoglucanase Cel5a From
Bacillus Agaradherans At 1.6 A Resolution
Length = 300
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Query: 43 MAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKEAVDS 90
M + +++GI+VFRA + S+G + +D S E KEAV++
Sbjct: 46 MKWLRDDWGINVFRAAMYTSSGGYI--------DDPSVKEKVKEAVEA 85
>pdb|4B8B|A Chain A, N-Terminal Domain Of The Yeast Not1
pdb|4B8B|B Chain B, N-Terminal Domain Of The Yeast Not1
Length = 603
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 36 KDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81
K ++L +++ A N + + R ++ S+G L FQ+ FED +Y+
Sbjct: 190 KQSLLYLLSIASLNLELFLQREEL--SDGPMLAYFQECFFEDFNYA 233
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,386,261
Number of Sequences: 62578
Number of extensions: 78830
Number of successful extensions: 274
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 251
Number of HSP's gapped (non-prelim): 34
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)