Query 034552
Match_columns 91
No_of_seqs 116 out of 1112
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 04:03:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034552.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034552hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00583 Acetyltransf_1: Acety 99.8 7.3E-19 1.6E-23 88.6 9.3 75 1-76 7-83 (83)
2 KOG3139 N-acetyltransferase [G 99.8 2.6E-19 5.6E-24 98.7 8.1 82 2-84 69-150 (165)
3 TIGR02382 wecD_rffC TDP-D-fuco 99.8 1.8E-18 3.9E-23 99.5 8.5 77 1-81 110-186 (191)
4 PRK10809 ribosomal-protein-S5- 99.8 2.5E-18 5.4E-23 98.9 8.3 83 1-84 88-170 (194)
5 PRK10151 ribosomal-protein-L7/ 99.8 7E-18 1.5E-22 96.0 8.8 80 1-82 78-157 (179)
6 TIGR02406 ectoine_EctA L-2,4-d 99.7 1.5E-17 3.2E-22 93.2 8.1 79 1-81 51-129 (157)
7 PRK10975 TDP-fucosamine acetyl 99.7 3.1E-17 6.6E-22 94.6 9.1 77 1-81 113-189 (194)
8 PRK10146 aminoalkylphosphonic 99.7 1.1E-17 2.4E-22 92.0 6.9 79 1-80 58-138 (144)
9 COG1670 RimL Acetyltransferase 99.7 2.9E-17 6.3E-22 93.1 7.9 82 1-83 79-161 (187)
10 PRK10140 putative acetyltransf 99.7 4.7E-17 1E-21 90.9 8.6 83 1-84 62-145 (162)
11 PF13302 Acetyltransf_3: Acety 99.7 1E-16 2.2E-21 87.8 9.4 74 1-76 69-142 (142)
12 TIGR01575 rimI ribosomal-prote 99.7 5.4E-17 1.2E-21 87.6 7.9 79 1-84 42-120 (131)
13 PRK15130 spermidine N1-acetylt 99.7 6.1E-17 1.3E-21 92.6 8.5 80 1-82 68-147 (186)
14 PF13420 Acetyltransf_4: Acety 99.7 9.7E-17 2.1E-21 89.2 8.2 81 1-83 62-142 (155)
15 PRK09491 rimI ribosomal-protei 99.7 1.4E-16 3E-21 88.0 8.5 79 1-84 51-129 (146)
16 PRK03624 putative acetyltransf 99.7 8.5E-17 1.8E-21 87.6 7.6 76 1-81 56-131 (140)
17 COG0456 RimI Acetyltransferase 99.7 1.9E-16 4.2E-21 89.6 9.3 82 2-84 74-158 (177)
18 TIGR03585 PseH pseudaminic aci 99.7 1.4E-16 3.1E-21 88.5 8.1 81 1-84 62-142 (156)
19 PF13523 Acetyltransf_8: Acety 99.7 5.5E-16 1.2E-20 86.1 9.0 82 1-82 59-143 (152)
20 PTZ00330 acetyltransferase; Pr 99.7 5.6E-16 1.2E-20 85.4 8.5 76 1-80 63-141 (147)
21 TIGR03448 mycothiol_MshD mycot 99.7 9.4E-16 2E-20 92.9 8.7 81 1-83 211-291 (292)
22 PLN02706 glucosamine 6-phospha 99.6 1.8E-15 4E-20 83.8 8.4 76 1-80 66-144 (150)
23 TIGR03827 GNAT_ablB putative b 99.6 7.4E-16 1.6E-20 92.7 6.9 80 1-83 169-248 (266)
24 PRK10314 putative acyltransfer 99.6 1.4E-15 3.1E-20 84.9 7.3 77 1-81 59-135 (153)
25 PF08445 FR47: FR47-like prote 99.6 1.2E-14 2.5E-19 74.2 7.8 63 16-80 20-82 (86)
26 TIGR03103 trio_acet_GNAT GNAT- 99.6 1E-14 2.2E-19 94.9 9.1 80 1-81 136-218 (547)
27 PF13508 Acetyltransf_7: Acety 99.6 2.2E-14 4.7E-19 71.9 8.2 66 1-77 14-79 (79)
28 KOG4135 Predicted phosphogluco 99.6 2E-14 4.4E-19 78.6 7.1 91 1-91 84-181 (185)
29 PRK07757 acetyltransferase; Pr 99.6 2.8E-14 6E-19 79.2 7.9 73 1-82 52-124 (152)
30 KOG3216 Diamine acetyltransfer 99.6 4.1E-14 8.9E-19 77.6 7.6 79 1-80 66-146 (163)
31 PRK07922 N-acetylglutamate syn 99.5 7.2E-14 1.6E-18 79.2 8.0 72 1-81 57-128 (169)
32 TIGR01686 FkbH FkbH-like domai 99.5 6.8E-14 1.5E-18 86.1 8.3 73 1-78 245-319 (320)
33 PF13673 Acetyltransf_10: Acet 99.5 1.1E-13 2.3E-18 73.6 8.0 63 1-75 55-117 (117)
34 PHA01807 hypothetical protein 99.5 6.8E-14 1.5E-18 78.1 7.3 72 1-73 64-136 (153)
35 PRK10514 putative acetyltransf 99.5 1E-13 2.2E-18 76.3 7.0 57 20-82 72-128 (145)
36 PHA00673 acetyltransferase dom 99.5 3.1E-13 6.7E-18 75.2 7.9 79 1-81 66-147 (154)
37 PRK10562 putative acetyltransf 99.5 2.4E-13 5.2E-18 75.1 7.3 68 1-81 59-126 (145)
38 COG1247 Sortase and related ac 99.5 9.4E-13 2E-17 74.2 8.8 81 2-84 65-147 (169)
39 PRK12308 bifunctional arginino 99.5 2.7E-13 5.9E-18 89.4 7.6 78 1-87 514-591 (614)
40 PLN02825 amino-acid N-acetyltr 99.5 4.7E-13 1E-17 86.4 8.1 74 1-81 418-491 (515)
41 COG1246 ArgA N-acetylglutamate 99.4 4.2E-13 9.1E-18 74.1 6.3 74 1-81 51-124 (153)
42 KOG2488 Acetyltransferase (GNA 99.4 3.6E-13 7.8E-18 76.3 5.9 81 1-82 104-184 (202)
43 PRK05279 N-acetylglutamate syn 99.4 8.2E-13 1.8E-17 84.3 8.0 74 1-81 345-418 (441)
44 cd02169 Citrate_lyase_ligase C 99.4 8.4E-13 1.8E-17 80.5 7.3 57 19-79 27-83 (297)
45 TIGR03448 mycothiol_MshD mycot 99.4 9.2E-13 2E-17 79.9 7.3 72 1-80 57-128 (292)
46 TIGR01890 N-Ac-Glu-synth amino 99.4 1.7E-12 3.7E-17 82.7 7.6 74 1-81 333-406 (429)
47 COG3393 Predicted acetyltransf 99.4 3.9E-12 8.5E-17 75.5 7.5 68 12-81 196-263 (268)
48 KOG3397 Acetyltransferases [Ge 99.4 1.7E-12 3.6E-17 72.9 5.1 79 1-85 68-146 (225)
49 PRK09831 putative acyltransfer 99.4 2.6E-12 5.7E-17 71.1 5.9 55 19-82 74-128 (147)
50 PF13527 Acetyltransf_9: Acety 99.4 5.8E-12 1.3E-16 67.9 7.0 72 1-78 52-127 (127)
51 PRK13688 hypothetical protein; 99.3 5.9E-12 1.3E-16 70.6 6.6 58 15-81 77-134 (156)
52 PF08444 Gly_acyl_tr_C: Aralky 99.3 4.1E-12 9E-17 64.4 5.2 62 16-79 18-79 (89)
53 KOG3138 Predicted N-acetyltran 99.3 8.2E-12 1.8E-16 71.4 5.4 71 17-87 89-159 (187)
54 KOG3396 Glucosamine-phosphate 99.3 2.5E-11 5.4E-16 65.6 6.2 60 16-79 84-143 (150)
55 COG3981 Predicted acetyltransf 99.2 4E-11 8.7E-16 67.2 6.2 80 1-82 80-161 (174)
56 KOG3235 Subunit of the major N 99.2 6.3E-11 1.4E-15 65.8 6.6 84 1-84 53-139 (193)
57 TIGR00124 cit_ly_ligase [citra 99.2 5E-11 1.1E-15 73.8 6.9 60 19-82 52-111 (332)
58 COG3153 Predicted acetyltransf 99.2 1E-10 2.2E-15 66.2 6.9 77 1-84 57-135 (171)
59 COG2153 ElaA Predicted acyltra 99.2 8.8E-11 1.9E-15 64.2 6.2 77 2-82 62-138 (155)
60 TIGR01211 ELP3 histone acetylt 99.2 1.7E-10 3.8E-15 74.9 7.9 77 1-81 425-517 (522)
61 PRK01346 hypothetical protein; 99.2 1.7E-10 3.6E-15 73.2 7.2 75 1-81 58-137 (411)
62 KOG3234 Acetyltransferase, (GN 99.2 1.7E-10 3.7E-15 63.9 6.0 81 3-84 55-135 (173)
63 cd04301 NAT_SF N-Acyltransfera 99.0 1.3E-09 2.8E-14 51.2 5.8 55 1-57 10-64 (65)
64 PF12746 GNAT_acetyltran: GNAT 99.0 5E-09 1.1E-13 63.2 8.2 64 16-84 188-251 (265)
65 PF13718 GNAT_acetyltr_2: GNAT 98.9 8.5E-09 1.8E-13 59.6 6.7 69 16-85 89-181 (196)
66 KOG4144 Arylalkylamine N-acety 98.8 7.5E-09 1.6E-13 57.4 3.5 62 16-80 100-161 (190)
67 COG3818 Predicted acetyltransf 98.7 2.3E-07 5.1E-12 50.3 7.6 67 15-82 82-150 (167)
68 COG1444 Predicted P-loop ATPas 98.6 1.3E-07 2.9E-12 63.7 6.0 67 17-86 531-597 (758)
69 PF14542 Acetyltransf_CG: GCN5 98.6 6.2E-07 1.3E-11 44.9 6.6 48 2-54 11-58 (78)
70 COG0454 WecD Histone acetyltra 98.4 1.2E-06 2.6E-11 45.1 4.6 44 23-75 87-130 (156)
71 COG4552 Eis Predicted acetyltr 98.3 1.3E-06 2.9E-11 54.3 4.9 59 16-80 69-127 (389)
72 PF12568 DUF3749: Acetyltransf 98.2 3.1E-05 6.8E-10 42.0 7.4 61 16-79 60-124 (128)
73 COG2388 Predicted acetyltransf 98.0 1.6E-05 3.5E-10 41.4 4.2 41 15-56 37-77 (99)
74 COG3053 CitC Citrate lyase syn 98.0 6.3E-05 1.4E-09 46.1 6.7 60 19-82 58-117 (352)
75 COG5628 Predicted acetyltransf 97.9 0.0001 2.2E-09 39.6 5.7 71 1-76 48-119 (143)
76 PF13880 Acetyltransf_13: ESCO 97.6 0.00027 5.9E-09 34.6 4.2 31 16-46 4-34 (70)
77 PF00765 Autoind_synth: Autoin 97.4 0.0021 4.6E-08 37.1 7.3 62 14-79 87-154 (182)
78 PRK13834 putative autoinducer 97.4 0.0034 7.3E-08 37.0 8.1 62 14-79 96-164 (207)
79 TIGR03694 exosort_acyl putativ 97.3 0.002 4.3E-08 38.8 6.9 60 15-78 109-196 (241)
80 PF05301 Mec-17: Touch recepto 97.2 0.0035 7.6E-08 33.7 6.4 72 2-78 26-102 (120)
81 COG1243 ELP3 Histone acetyltra 97.2 0.001 2.2E-08 43.3 4.9 51 26-80 459-509 (515)
82 PF06852 DUF1248: Protein of u 97.2 0.0056 1.2E-07 35.4 7.4 61 15-80 76-137 (181)
83 KOG2535 RNA polymerase II elon 97.1 0.0014 3.1E-08 41.5 4.9 52 27-81 497-548 (554)
84 COG3882 FkbH Predicted enzyme 97.1 0.00066 1.4E-08 44.5 3.3 63 16-79 485-549 (574)
85 COG2401 ABC-type ATPase fused 96.9 0.00044 9.4E-09 44.9 1.0 62 16-78 240-306 (593)
86 cd04264 DUF619-NAGS DUF619 dom 96.7 0.004 8.7E-08 32.6 3.9 51 15-71 32-82 (99)
87 cd04265 DUF619-NAGS-U DUF619 d 96.4 0.0071 1.5E-07 31.6 3.5 51 15-71 32-82 (99)
88 PF11039 DUF2824: Protein of u 96.3 0.067 1.5E-06 29.4 6.9 77 2-84 50-126 (151)
89 PF01853 MOZ_SAS: MOZ/SAS fami 96.3 0.031 6.8E-07 32.5 5.9 31 17-47 80-110 (188)
90 COG3375 Uncharacterized conser 95.9 0.041 8.9E-07 33.0 5.2 67 17-84 74-141 (266)
91 PF01233 NMT: Myristoyl-CoA:pr 95.8 0.08 1.7E-06 30.1 6.0 56 1-57 90-150 (162)
92 KOG4601 Uncharacterized conser 95.8 0.06 1.3E-06 32.4 5.6 68 2-73 89-160 (264)
93 PF13480 Acetyltransf_6: Acety 95.6 0.085 1.8E-06 28.3 5.7 43 16-59 93-135 (142)
94 COG3916 LasI N-acyl-L-homoseri 95.6 0.24 5.2E-06 29.4 7.6 64 13-80 94-163 (209)
95 KOG2696 Histone acetyltransfer 95.5 0.032 7E-07 35.6 4.2 51 2-52 201-252 (403)
96 KOG2747 Histone acetyltransfer 95.5 0.012 2.6E-07 37.8 2.3 44 3-46 246-289 (396)
97 TIGR03827 GNAT_ablB putative b 95.3 0.056 1.2E-06 32.9 4.6 48 33-84 21-68 (266)
98 KOG2036 Predicted P-loop ATPas 95.0 0.032 6.9E-07 38.7 3.1 31 17-47 614-644 (1011)
99 PHA01733 hypothetical protein 95.0 0.032 6.9E-07 31.4 2.6 48 35-82 87-134 (153)
100 PLN03238 probable histone acet 94.9 0.082 1.8E-06 32.7 4.5 30 18-47 156-185 (290)
101 PF11090 DUF2833: Protein of u 94.8 0.18 3.9E-06 25.7 4.8 29 51-79 55-83 (86)
102 PLN03239 histone acetyltransfe 94.5 0.09 1.9E-06 33.4 4.1 30 18-47 214-243 (351)
103 PF02474 NodA: Nodulation prot 93.9 0.23 5.1E-06 28.7 4.6 53 17-74 85-137 (196)
104 PF04377 ATE_C: Arginine-tRNA- 93.6 0.32 7E-06 26.7 4.8 59 17-79 63-121 (128)
105 PTZ00064 histone acetyltransfe 93.6 0.13 2.9E-06 34.3 3.7 30 18-47 385-414 (552)
106 PHA00432 internal virion prote 93.5 0.24 5.1E-06 27.5 4.0 30 51-80 92-121 (137)
107 PLN00104 MYST -like histone ac 93.5 0.075 1.6E-06 34.9 2.4 30 18-47 307-336 (450)
108 PRK14852 hypothetical protein; 92.9 0.37 8.1E-06 34.8 5.2 69 15-87 119-188 (989)
109 TIGR03019 pepcterm_femAB FemAB 92.6 0.51 1.1E-05 29.6 5.2 59 22-81 224-282 (330)
110 PF04768 DUF619: Protein of un 92.5 0.57 1.2E-05 27.0 4.8 55 13-73 84-138 (170)
111 PF04958 AstA: Arginine N-succ 92.3 0.34 7.3E-06 31.0 4.0 33 15-47 119-151 (342)
112 KOG3698 Hyaluronoglucosaminida 92.1 0.36 7.9E-06 33.1 4.2 57 27-84 826-882 (891)
113 PRK01305 arginyl-tRNA-protein 91.6 1.2 2.5E-05 27.2 5.6 61 16-80 167-227 (240)
114 TIGR03243 arg_catab_AOST argin 91.3 0.57 1.2E-05 29.9 4.2 32 15-46 115-146 (335)
115 PHA02769 hypothetical protein; 91.0 0.42 9E-06 25.8 3.0 46 35-82 94-141 (154)
116 TIGR03245 arg_AOST_alph argini 91.0 0.63 1.4E-05 29.7 4.2 31 15-45 116-146 (336)
117 PF13444 Acetyltransf_5: Acety 90.5 0.19 4.2E-06 26.1 1.5 23 16-38 77-99 (101)
118 TIGR03244 arg_catab_AstA argin 90.5 0.67 1.5E-05 29.6 4.1 31 15-45 115-145 (336)
119 PRK10456 arginine succinyltran 90.5 0.67 1.5E-05 29.7 4.0 31 15-45 117-147 (344)
120 COG2935 Putative arginyl-tRNA: 89.9 1.4 2.9E-05 27.0 4.8 61 17-81 175-235 (253)
121 cd04266 DUF619-NAGS-FABP DUF61 89.5 1.4 3E-05 23.5 4.2 52 15-72 37-90 (108)
122 COG5027 SAS2 Histone acetyltra 89.1 0.13 2.7E-06 32.8 0.1 26 16-41 261-286 (395)
123 PF12261 T_hemolysin: Thermost 88.6 3.3 7.2E-05 24.1 5.7 57 15-79 85-141 (179)
124 KOG4387 Ornithine decarboxylas 87.9 3.5 7.7E-05 24.0 5.3 62 20-81 102-166 (191)
125 PRK00756 acyltransferase NodA; 86.7 3.1 6.6E-05 24.1 4.7 53 16-73 84-136 (196)
126 cd07235 MRD Mitomycin C resist 83.5 1.8 3.9E-05 22.6 2.8 24 55-79 4-27 (122)
127 cd08356 Glo_EDI_BRP_like_17 Th 82.3 1.1 2.3E-05 23.5 1.6 21 62-82 11-31 (113)
128 cd08353 Glo_EDI_BRP_like_7 Thi 80.2 2.7 5.8E-05 22.6 2.8 28 52-80 4-31 (142)
129 PF04816 DUF633: Family of unk 79.8 7.8 0.00017 23.0 4.7 50 32-81 73-123 (205)
130 PF11124 Pho86: Inorganic phos 79.0 14 0.0003 23.5 6.9 78 2-79 181-270 (304)
131 cd09012 Glo_EDI_BRP_like_24 Th 78.6 2.1 4.5E-05 22.5 2.0 18 62-79 10-27 (124)
132 KOG2779 N-myristoyl transferas 77.0 3.3 7.2E-05 26.9 2.7 32 16-47 166-197 (421)
133 cd08350 BLMT_like BLMT, a bleo 77.0 2.6 5.7E-05 22.0 2.1 21 62-82 12-32 (120)
134 KOG3014 Protein involved in es 75.2 14 0.0003 22.9 4.9 32 15-46 181-212 (257)
135 PF02100 ODC_AZ: Ornithine dec 74.6 11 0.00024 20.1 4.7 48 34-81 38-88 (108)
136 COG5630 ARG2 Acetylglutamate s 72.8 12 0.00027 24.7 4.5 41 5-45 388-429 (495)
137 COG3473 Maleate cis-trans isom 70.4 14 0.00031 22.4 4.1 32 49-80 115-149 (238)
138 COG3607 Predicted lactoylgluta 70.0 3.6 7.9E-05 22.6 1.5 17 63-79 14-30 (133)
139 COG2231 Uncharacterized protei 69.8 11 0.00024 22.6 3.5 40 32-79 121-160 (215)
140 PF13380 CoA_binding_2: CoA bi 68.7 16 0.00034 19.5 5.1 45 35-80 64-108 (116)
141 PRK13913 3-methyladenine DNA g 68.7 13 0.00028 22.4 3.8 40 31-78 126-165 (218)
142 cd07267 THT_Oxygenase_N N-term 68.6 5.5 0.00012 20.6 2.0 27 53-80 5-31 (113)
143 PTZ00129 40S ribosomal protein 68.4 20 0.00043 20.4 5.3 48 35-83 74-132 (149)
144 cd08344 MhqB_like_N N-terminal 67.6 8.2 0.00018 19.8 2.6 27 53-80 4-30 (112)
145 COG0271 BolA Stress-induced mo 66.8 16 0.00035 18.9 5.2 47 16-63 37-85 (90)
146 PRK04531 acetylglutamate kinas 66.2 13 0.00028 24.5 3.7 53 15-73 308-360 (398)
147 PF12681 Glyoxalase_2: Glyoxal 65.7 7.6 0.00016 19.5 2.2 20 63-82 6-26 (108)
148 PF04015 DUF362: Domain of unk 65.4 23 0.0005 20.7 4.4 46 34-80 20-67 (206)
149 cd08358 Glo_EDI_BRP_like_21 Th 65.3 11 0.00025 20.5 2.9 18 62-79 12-30 (127)
150 PHA00771 head assembly protein 64.9 22 0.00048 19.7 6.5 65 17-84 62-126 (151)
151 TIGR02990 ectoine_eutA ectoine 64.4 18 0.00038 22.1 3.8 38 42-80 111-151 (239)
152 cd03173 DUF619-like DUF619 dom 63.2 20 0.00044 18.8 6.4 51 15-71 31-81 (98)
153 TIGR00055 uppS undecaprenyl di 62.4 14 0.00031 22.4 3.1 35 27-62 20-54 (226)
154 cd08342 HPPD_N_like N-terminal 62.0 18 0.0004 19.4 3.4 26 55-81 4-30 (136)
155 COG1658 Small primase-like pro 61.8 8.5 0.00018 21.2 2.0 22 23-44 60-81 (127)
156 PRK14837 undecaprenyl pyrophos 60.9 16 0.00034 22.3 3.2 35 27-62 27-61 (230)
157 PRK10150 beta-D-glucuronidase; 60.8 41 0.00089 23.3 5.4 64 18-82 292-357 (604)
158 PRK14831 undecaprenyl pyrophos 60.5 15 0.00033 22.6 3.1 36 27-63 41-77 (249)
159 cd07238 Glo_EDI_BRP_like_5 Thi 60.1 9.9 0.00021 19.4 2.0 18 62-79 10-28 (112)
160 TIGR03645 glyox_marine lactoyl 57.9 17 0.00037 20.4 2.9 27 51-78 4-31 (162)
161 PF08901 DUF1847: Protein of u 57.8 21 0.00045 20.5 3.1 41 39-80 43-87 (157)
162 PF02064 MAS20: MAS20 protein 57.7 3.4 7.4E-05 22.5 0.0 14 1-14 10-23 (121)
163 TIGR03628 arch_S11P archaeal r 57.1 30 0.00065 18.7 5.0 47 35-82 48-105 (114)
164 PF10237 N6-adenineMlase: Prob 56.9 36 0.00078 19.5 4.3 59 18-84 85-146 (162)
165 cd08346 PcpA_N_like N-terminal 56.8 20 0.00044 18.3 2.9 27 54-81 4-31 (126)
166 PF12953 DUF3842: Domain of un 56.7 33 0.00071 19.1 3.6 45 28-77 6-50 (131)
167 PF00925 GTP_cyclohydro2: GTP 56.6 29 0.00063 19.9 3.7 32 49-82 137-168 (169)
168 PRK14841 undecaprenyl pyrophos 56.1 21 0.00045 21.8 3.1 35 27-62 24-58 (233)
169 PRK09607 rps11p 30S ribosomal 55.6 35 0.00075 19.0 5.0 47 35-82 55-112 (132)
170 PF00903 Glyoxalase: Glyoxalas 55.4 14 0.00029 19.0 2.1 29 53-82 3-32 (128)
171 PRK14842 undecaprenyl pyrophos 55.2 23 0.00049 21.8 3.2 35 27-62 29-63 (241)
172 COG2384 Predicted SAM-dependen 55.0 47 0.001 20.3 4.5 50 32-81 92-142 (226)
173 PRK14829 undecaprenyl pyrophos 55.0 19 0.00041 22.1 2.9 36 27-63 35-71 (243)
174 cd07253 Glo_EDI_BRP_like_2 Thi 54.5 29 0.00062 17.7 3.3 29 52-81 4-33 (125)
175 cd07265 2_3_CTD_N N-terminal d 54.3 21 0.00045 18.5 2.7 28 53-81 6-34 (122)
176 cd07255 Glo_EDI_BRP_like_12 Th 53.8 24 0.00051 18.2 2.9 28 53-81 4-32 (125)
177 PF14696 Glyoxalase_5: Hydroxy 53.5 8.2 0.00018 21.5 1.1 30 51-81 9-38 (139)
178 cd00475 CIS_IPPS Cis (Z)-Isopr 53.3 25 0.00053 21.3 3.1 35 27-62 21-55 (221)
179 PRK14832 undecaprenyl pyrophos 53.3 20 0.00043 22.2 2.8 35 27-62 39-73 (253)
180 PF02836 Glyco_hydro_2_C: Glyc 53.2 53 0.0012 20.4 6.3 66 16-82 13-80 (298)
181 cd07252 BphC1-RGP6_N_like N-te 53.1 22 0.00047 18.5 2.7 26 54-80 5-31 (120)
182 PF03376 Adeno_E3B: Adenovirus 53.0 7.3 0.00016 18.8 0.7 14 25-38 52-65 (67)
183 cd07266 HPCD_N_class_II N-term 52.7 18 0.0004 18.6 2.4 28 52-80 5-33 (121)
184 PTZ00349 dehydrodolichyl dipho 52.7 23 0.00049 22.8 3.0 35 27-62 40-74 (322)
185 COG0623 FabI Enoyl-[acyl-carri 52.4 35 0.00075 21.2 3.6 35 26-60 152-186 (259)
186 COG0529 CysC Adenylylsulfate k 52.3 30 0.00066 20.6 3.2 51 33-87 33-84 (197)
187 cd08349 BLMA_like Bleomycin bi 52.3 15 0.00032 18.5 1.9 19 63-81 9-28 (112)
188 PRK14833 undecaprenyl pyrophos 52.2 27 0.00059 21.3 3.2 35 27-62 25-59 (233)
189 PRK14840 undecaprenyl pyrophos 51.8 24 0.00052 21.8 2.9 35 27-62 43-77 (250)
190 COG0346 GloA Lactoylglutathion 51.7 30 0.00064 17.4 3.1 29 53-82 4-33 (138)
191 PF02388 FemAB: FemAB family; 51.7 35 0.00075 22.5 3.8 56 28-84 74-144 (406)
192 PRK10240 undecaprenyl pyrophos 51.6 22 0.00049 21.6 2.8 35 27-62 14-48 (229)
193 PRK14827 undecaprenyl pyrophos 51.2 22 0.00047 22.6 2.7 36 27-63 88-124 (296)
194 cd07263 Glo_EDI_BRP_like_16 Th 51.2 16 0.00035 18.4 2.0 20 62-81 8-28 (119)
195 KOG1602 Cis-prenyltransferase 51.1 42 0.0009 21.0 3.8 34 28-62 58-91 (271)
196 PRK14834 undecaprenyl pyrophos 50.1 33 0.00072 21.2 3.3 35 27-62 35-69 (249)
197 PRK10291 glyoxalase I; Provisi 50.1 17 0.00038 19.1 2.0 18 63-80 7-25 (129)
198 PF01255 Prenyltransf: Putativ 49.9 22 0.00047 21.4 2.5 34 27-61 15-48 (223)
199 PF01861 DUF43: Protein of unk 49.8 26 0.00056 21.6 2.8 68 17-86 110-182 (243)
200 PRK14968 putative methyltransf 49.8 46 0.001 18.7 4.2 43 37-80 129-171 (188)
201 cd08362 BphC5-RrK37_N_like N-t 49.7 25 0.00055 18.0 2.6 28 52-80 4-32 (120)
202 cd07241 Glo_EDI_BRP_like_3 Thi 49.6 27 0.00059 17.8 2.7 25 54-79 4-29 (125)
203 cd08352 Glo_EDI_BRP_like_1 Thi 49.3 32 0.0007 17.5 3.0 28 51-79 3-31 (125)
204 PF12652 CotJB: CotJB protein; 49.3 11 0.00025 18.8 1.1 20 54-73 19-38 (78)
205 PF06564 YhjQ: YhjQ protein; 49.0 52 0.0011 20.3 4.0 45 31-77 10-54 (243)
206 cd07240 ED_TypeI_classII_N N-t 48.6 19 0.00042 18.2 2.0 20 62-81 12-32 (117)
207 COG0807 RibA GTP cyclohydrolas 48.4 36 0.00079 20.2 3.2 33 49-83 138-170 (193)
208 PRK14839 undecaprenyl pyrophos 48.2 30 0.00065 21.3 2.9 35 27-62 30-64 (239)
209 PF01722 BolA: BolA-like prote 48.1 35 0.00076 16.9 5.4 44 17-61 27-72 (76)
210 cd08357 Glo_EDI_BRP_like_18 Th 48.1 19 0.0004 18.6 1.9 18 63-80 10-28 (125)
211 PRK14835 undecaprenyl pyrophos 47.7 29 0.00062 21.8 2.9 35 27-62 62-96 (275)
212 TIGR00068 glyox_I lactoylgluta 47.1 30 0.00065 18.9 2.7 29 50-79 16-45 (150)
213 PRK11892 pyruvate dehydrogenas 46.3 66 0.0014 21.9 4.5 54 22-75 395-448 (464)
214 cd08348 BphC2-C3-RGP6_C_like T 46.2 38 0.00082 17.8 3.0 19 63-81 12-31 (134)
215 cd06587 Glo_EDI_BRP_like This 45.8 24 0.00052 17.2 2.1 21 61-81 7-28 (112)
216 cd07256 HPCD_C_class_II C-term 45.7 33 0.00072 19.1 2.8 27 52-79 4-31 (161)
217 PF09288 UBA_3: Fungal ubiquit 44.9 16 0.00034 17.1 1.1 15 33-47 7-21 (55)
218 cd07264 Glo_EDI_BRP_like_15 Th 44.7 23 0.0005 18.2 2.0 18 62-79 10-28 (125)
219 COG3543 Uncharacterized conser 44.6 56 0.0012 18.2 3.3 36 27-62 14-49 (135)
220 cd01027 TOPRIM_RNase_M5_like T 44.6 18 0.00039 18.0 1.4 23 21-43 48-70 (81)
221 cd07249 MMCE Methylmalonyl-CoA 44.3 36 0.00079 17.4 2.7 26 55-81 4-30 (128)
222 PF02219 MTHFR: Methylenetetra 44.1 79 0.0017 19.7 5.9 41 33-74 247-287 (287)
223 PRK14828 undecaprenyl pyrophos 44.1 42 0.00091 20.8 3.1 33 27-60 47-80 (256)
224 COG5092 NMT1 N-myristoyl trans 43.5 44 0.00095 21.7 3.2 32 16-47 164-195 (451)
225 PRK14830 undecaprenyl pyrophos 43.4 46 0.00099 20.6 3.2 31 30-61 46-76 (251)
226 PRK14838 undecaprenyl pyrophos 43.2 39 0.00085 20.8 2.9 35 27-62 31-65 (242)
227 PRK11478 putative lyase; Provi 43.1 36 0.00078 17.7 2.6 27 52-79 7-34 (129)
228 COG4904 Uncharacterized protei 42.7 29 0.00062 19.8 2.1 19 63-81 69-87 (174)
229 cd08355 Glo_EDI_BRP_like_14 Th 42.5 28 0.00062 17.9 2.1 19 62-80 9-28 (122)
230 PF01751 Toprim: Toprim domain 42.3 33 0.00073 17.5 2.3 12 52-63 60-71 (100)
231 PF15538 Toxin_61: Putative to 41.9 22 0.00048 20.3 1.6 31 59-89 21-51 (157)
232 cd08364 FosX FosX, a fosfomyci 41.7 44 0.00096 17.7 2.8 29 51-80 4-33 (131)
233 cd08347 PcpA_C_like C-terminal 41.4 43 0.00094 18.7 2.8 28 53-81 3-31 (157)
234 cd07242 Glo_EDI_BRP_like_6 Thi 41.3 47 0.001 17.2 2.8 27 53-80 3-33 (128)
235 PRK10702 endonuclease III; Pro 40.8 71 0.0015 19.1 3.7 40 32-79 115-154 (211)
236 cd09013 BphC-JF8_N_like N-term 40.8 44 0.00096 17.2 2.7 28 52-80 7-35 (121)
237 PRK05031 tRNA (uracil-5-)-meth 40.6 87 0.0019 20.3 4.3 51 20-80 289-341 (362)
238 cd00218 GlcAT-I Beta1,3-glucur 40.4 57 0.0012 19.9 3.3 34 39-73 80-116 (223)
239 cd07243 2_3_CTD_C C-terminal d 40.4 51 0.0011 18.0 2.9 28 52-80 7-35 (143)
240 PF04914 DltD_C: DltD C-termin 40.4 66 0.0014 17.8 3.4 44 39-87 38-81 (130)
241 cd08361 PpCmtC_N N-terminal do 40.1 28 0.00062 18.3 1.9 27 53-80 8-35 (124)
242 PF02268 TFIIA_gamma_N: Transc 39.8 41 0.00089 15.3 2.7 20 28-47 5-24 (49)
243 cd07237 BphC1-RGP6_C_like C-te 39.8 53 0.0011 18.1 3.0 29 50-79 8-37 (154)
244 PF01136 Peptidase_U32: Peptid 39.7 82 0.0018 18.7 4.4 21 59-79 45-65 (233)
245 PRK04017 hypothetical protein; 39.2 34 0.00074 19.0 2.1 23 22-44 69-91 (132)
246 PF04339 DUF482: Protein of un 39.1 1.1E+02 0.0025 20.1 5.0 55 22-79 105-159 (370)
247 PRK00393 ribA GTP cyclohydrola 39.1 83 0.0018 18.6 4.2 45 28-82 126-170 (197)
248 PF07927 YcfA: YcfA-like prote 38.8 41 0.0009 15.0 2.1 15 65-79 3-17 (56)
249 KOG4238 Bifunctional ATP sulfu 38.2 28 0.00061 23.2 1.9 52 33-87 60-111 (627)
250 PRK06724 hypothetical protein; 37.7 66 0.0014 17.3 3.1 27 51-78 7-37 (128)
251 COG0022 AcoB Pyruvate/2-oxoglu 37.7 46 0.00099 21.5 2.6 36 22-57 255-290 (324)
252 TIGR00505 ribA GTP cyclohydrol 37.5 88 0.0019 18.4 4.2 44 29-82 124-167 (191)
253 COG2961 ComJ Protein involved 37.4 1.1E+02 0.0023 19.4 6.4 55 20-74 157-211 (279)
254 PRK09318 bifunctional 3,4-dihy 37.1 1.1E+02 0.0023 20.5 4.3 32 49-82 325-356 (387)
255 PLN02683 pyruvate dehydrogenas 36.3 1E+02 0.0022 20.1 4.2 54 22-75 283-336 (356)
256 cd09011 Glo_EDI_BRP_like_23 Th 35.8 41 0.00089 17.3 2.1 18 62-79 12-30 (120)
257 PF01418 HTH_6: Helix-turn-hel 35.3 31 0.00067 16.8 1.4 30 50-79 35-64 (77)
258 PRK02983 lysS lysyl-tRNA synth 35.1 1.8E+02 0.0039 22.4 5.5 56 1-61 432-487 (1094)
259 COG1724 Predicted RNA binding 34.9 50 0.0011 16.1 2.0 17 64-80 10-26 (66)
260 PLN02540 methylenetetrahydrofo 34.4 1.7E+02 0.0036 20.7 5.0 43 34-77 245-287 (565)
261 COG3159 Uncharacterized protei 34.3 1.1E+02 0.0024 18.6 4.6 45 2-47 166-210 (218)
262 cd07262 Glo_EDI_BRP_like_19 Th 34.2 71 0.0015 16.4 3.1 20 61-80 9-32 (123)
263 PRK09432 metF 5,10-methylenete 34.1 1.3E+02 0.0027 19.1 5.2 41 34-75 252-292 (296)
264 cd08360 MhqB_like_C C-terminal 33.6 45 0.00097 17.7 2.0 27 53-80 5-32 (134)
265 PRK09319 bifunctional 3,4-dihy 33.2 1.2E+02 0.0026 21.3 4.2 33 49-83 348-380 (555)
266 PRK15447 putative protease; Pr 33.2 1.3E+02 0.0028 19.0 4.4 22 57-78 114-135 (301)
267 cd08359 Glo_EDI_BRP_like_22 Th 32.8 48 0.001 16.9 2.0 19 62-80 11-30 (119)
268 PHA03005 sulfhydryl oxidase; P 32.5 38 0.00083 17.7 1.5 17 26-42 2-18 (96)
269 cd08345 Fosfomycin_RP Fosfomyc 32.5 49 0.0011 16.6 2.0 19 62-80 8-27 (113)
270 PF04378 RsmJ: Ribosomal RNA s 32.4 1.3E+02 0.0027 18.7 6.4 54 20-73 126-179 (245)
271 PF11009 DUF2847: Protein of u 32.1 86 0.0019 16.7 4.7 52 27-78 26-78 (105)
272 TIGR01177 conserved hypothetic 31.9 1.2E+02 0.0027 19.2 4.0 60 19-81 248-314 (329)
273 PRK14836 undecaprenyl pyrophos 31.5 50 0.0011 20.5 2.1 33 27-60 35-67 (253)
274 cd07244 FosA FosA, a Fosfomyci 31.5 82 0.0018 16.3 2.9 26 54-80 4-30 (121)
275 PHA02324 hypothetical protein 31.2 24 0.00051 15.5 0.5 7 27-33 40-46 (47)
276 KOG1201 Hydroxysteroid 17-beta 31.1 1.5E+02 0.0032 19.1 4.7 41 29-74 45-86 (300)
277 KOG0564 5,10-methylenetetrahyd 31.0 1.4E+02 0.0031 20.8 4.2 46 32-78 255-301 (590)
278 cd08343 ED_TypeI_classII_C C-t 30.5 90 0.002 16.4 3.1 19 62-80 9-28 (131)
279 COG0826 Collagenase and relate 30.4 1.6E+02 0.0035 19.3 4.9 24 55-78 118-141 (347)
280 PLN02300 lactoylglutathione ly 30.4 54 0.0012 20.2 2.2 29 51-80 24-53 (286)
281 cd07043 STAS_anti-anti-sigma_f 30.1 77 0.0017 15.5 3.0 39 35-77 55-93 (99)
282 KOG2499 Beta-N-acetylhexosamin 30.0 87 0.0019 21.7 3.1 31 49-79 331-361 (542)
283 TIGR01417 PTS_I_fam phosphoeno 29.9 2E+02 0.0043 20.2 5.2 46 35-81 480-525 (565)
284 PLN02831 Bifunctional GTP cycl 29.8 1.5E+02 0.0032 20.3 4.1 32 49-82 378-409 (450)
285 PF02374 ArsA_ATPase: Anion-tr 29.6 1.5E+02 0.0033 18.8 4.1 49 32-80 10-58 (305)
286 TIGR01083 nth endonuclease III 29.5 1.2E+02 0.0026 17.6 3.9 39 32-78 112-150 (191)
287 TIGR03632 bact_S11 30S ribosom 29.5 97 0.0021 16.4 5.3 52 30-82 39-94 (108)
288 PF01585 G-patch: G-patch doma 29.4 44 0.00095 14.6 1.3 13 65-77 4-16 (45)
289 COG3640 CooC CO dehydrogenase 28.8 1.5E+02 0.0033 18.5 5.3 61 17-82 155-218 (255)
290 PRK10909 rsmD 16S rRNA m(2)G96 28.5 1.1E+02 0.0025 18.0 3.2 25 19-44 121-145 (199)
291 cd07246 Glo_EDI_BRP_like_8 Thi 28.5 90 0.002 15.8 3.2 19 62-80 11-30 (122)
292 KOG0524 Pyruvate dehydrogenase 28.3 89 0.0019 20.0 2.8 36 21-56 290-325 (359)
293 PF06414 Zeta_toxin: Zeta toxi 28.2 1.3E+02 0.0028 17.4 5.8 43 35-78 78-123 (199)
294 COG2818 Tag 3-methyladenine DN 28.1 59 0.0013 19.3 1.9 25 61-85 141-165 (188)
295 PF06399 GFRP: GTP cyclohydrol 28.0 55 0.0012 16.6 1.6 44 37-80 26-69 (83)
296 PRK13886 conjugal transfer pro 27.8 1.5E+02 0.0034 18.3 4.4 40 30-69 10-49 (241)
297 cd07254 Glo_EDI_BRP_like_20 Th 27.5 97 0.0021 15.8 3.0 18 63-80 12-30 (120)
298 CHL00041 rps11 ribosomal prote 27.4 1.1E+02 0.0024 16.5 5.4 47 35-82 58-107 (116)
299 PF00411 Ribosomal_S11: Riboso 27.0 1.1E+02 0.0024 16.2 5.2 47 35-82 45-94 (110)
300 PF13289 SIR2_2: SIR2-like dom 27.0 1.1E+02 0.0024 16.3 4.4 24 54-77 118-142 (143)
301 COG3250 LacZ Beta-galactosidas 26.9 2.7E+02 0.0058 20.7 5.4 65 16-81 298-364 (808)
302 PRK07758 hypothetical protein; 26.9 73 0.0016 16.7 1.9 20 32-52 73-92 (95)
303 COG3494 Uncharacterized protei 26.8 80 0.0017 19.9 2.4 23 65-87 114-136 (279)
304 TIGR00100 hypA hydrogenase nic 26.8 1.1E+02 0.0024 16.3 2.9 23 32-55 4-26 (115)
305 COG2898 Uncharacterized conser 26.6 2.3E+02 0.0051 19.9 5.4 56 2-61 405-460 (538)
306 COG1437 CyaB Adenylate cyclase 26.3 55 0.0012 19.3 1.6 28 55-83 81-108 (178)
307 PRK04101 fosfomycin resistance 26.0 1.2E+02 0.0025 16.3 3.0 28 52-80 5-33 (139)
308 PRK09311 bifunctional 3,4-dihy 25.9 2E+02 0.0043 19.3 4.2 32 49-82 344-375 (402)
309 cd08363 FosB FosB, a fosfomyci 25.8 1.2E+02 0.0025 16.1 2.8 25 55-80 4-29 (131)
310 COG1810 Uncharacterized protei 25.7 1.3E+02 0.0027 18.5 3.0 58 18-77 79-137 (224)
311 PLN02458 transferase, transfer 25.6 1.2E+02 0.0027 19.8 3.1 36 37-73 188-223 (346)
312 cd07251 Glo_EDI_BRP_like_10 Th 25.5 68 0.0015 16.2 1.8 19 62-80 8-27 (121)
313 TIGR00985 3a0801s04tom mitocho 25.4 4.5 9.7E-05 22.9 -2.8 20 2-32 21-40 (148)
314 PF01740 STAS: STAS domain; I 25.2 1.1E+02 0.0024 15.7 4.1 39 35-77 65-103 (117)
315 PF13704 Glyco_tranf_2_4: Glyc 25.0 1E+02 0.0022 15.3 4.7 36 37-73 5-40 (97)
316 PF13669 Glyoxalase_4: Glyoxal 25.0 99 0.0021 15.8 2.4 22 59-80 6-28 (109)
317 cd04197 eIF-2B_epsilon_N The N 25.0 1.4E+02 0.0029 17.5 3.2 34 35-69 30-63 (217)
318 cd09014 BphC-JF8_C_like C-term 25.0 1.1E+02 0.0025 17.1 2.8 28 52-80 7-35 (166)
319 COG2266 GTP:adenosylcobinamide 24.9 1.6E+02 0.0034 17.4 4.5 45 35-81 26-70 (177)
320 COG0100 RpsK Ribosomal protein 24.6 1.4E+02 0.003 16.6 5.0 47 36-83 64-113 (129)
321 TIGR00677 fadh2_euk methylenet 24.5 1.9E+02 0.0041 18.2 5.2 42 34-76 237-278 (281)
322 PRK01229 N-glycosylase/DNA lya 24.5 1.5E+02 0.0032 17.9 3.2 40 31-78 124-163 (208)
323 PF10566 Glyco_hydro_97: Glyco 24.3 2E+02 0.0042 18.2 4.5 18 35-53 71-88 (273)
324 TIGR00537 hemK_rel_arch HemK-r 24.2 1.5E+02 0.0032 16.8 5.0 43 37-80 121-163 (179)
325 COG2242 CobL Precorrin-6B meth 24.2 1.7E+02 0.0036 17.4 3.8 40 36-76 115-154 (187)
326 cd07247 SgaA_N_like N-terminal 24.0 80 0.0017 15.9 1.9 19 63-81 11-30 (114)
327 PF02593 dTMP_synthase: Thymid 24.0 1.7E+02 0.0036 17.9 3.4 58 20-79 77-136 (217)
328 PF02334 RTP: Replication term 23.8 27 0.0006 18.9 0.1 22 29-51 28-49 (122)
329 PRK14019 bifunctional 3,4-dihy 23.7 1.8E+02 0.0038 19.3 3.6 31 49-82 333-363 (367)
330 KOG2313 Stress-induced protein 23.6 1.3E+02 0.0028 15.9 5.3 44 16-59 49-94 (100)
331 PF00633 HHH: Helix-hairpin-he 23.6 68 0.0015 12.7 1.4 14 32-45 17-30 (30)
332 PF01910 DUF77: Domain of unkn 23.4 1.2E+02 0.0026 15.5 3.4 24 37-61 51-74 (92)
333 cd01274 AIDA-1b AIDA-1b Phosph 23.3 1.4E+02 0.0031 16.3 4.4 43 17-60 6-48 (127)
334 PRK11628 transcriptional regul 23.2 1.3E+02 0.0029 15.9 5.5 47 16-63 35-83 (105)
335 cd01212 JIP JNK-interacting pr 23.2 1.6E+02 0.0034 16.7 5.1 30 17-47 7-36 (148)
336 smart00443 G_patch glycine ric 23.1 79 0.0017 13.7 1.5 15 63-77 4-18 (47)
337 cd01215 Dab Disabled (Dab) Pho 23.1 1.6E+02 0.0034 16.7 4.4 43 19-62 19-62 (139)
338 PF02896 PEP-utilizers_C: PEP- 22.9 2.1E+02 0.0046 18.2 4.5 48 34-82 232-279 (293)
339 KOG0538 Glycolate oxidase [Ene 22.9 1.6E+02 0.0036 19.2 3.3 38 17-62 121-158 (363)
340 PF01155 HypA: Hydrogenase exp 22.8 1.4E+02 0.003 15.9 2.9 24 32-56 4-27 (113)
341 COG0473 LeuB Isocitrate/isopro 22.7 1.3E+02 0.0028 19.8 2.9 44 30-75 10-53 (348)
342 cd07245 Glo_EDI_BRP_like_9 Thi 22.5 73 0.0016 15.6 1.6 19 62-80 10-29 (114)
343 cd07233 Glyoxalase_I Glyoxalas 22.5 1.2E+02 0.0027 15.3 3.0 19 62-80 10-29 (121)
344 cd00145 POLBc DNA polymerase t 22.5 1.7E+02 0.0037 18.7 3.4 28 33-61 136-163 (323)
345 KOG1220 Phosphoglucomutase/pho 22.4 96 0.0021 21.9 2.3 53 35-87 342-399 (607)
346 cd04777 HTH_MerR-like_sg1 Heli 22.2 78 0.0017 16.4 1.6 15 63-77 13-27 (107)
347 PLN02367 lactoylglutathione ly 22.2 89 0.0019 19.2 2.0 18 63-80 86-104 (233)
348 KOG3040 Predicted sugar phosph 22.1 1.3E+02 0.0028 18.6 2.6 38 42-79 31-69 (262)
349 PF08373 RAP: RAP domain; Int 21.8 91 0.002 13.9 1.7 14 67-80 24-37 (58)
350 PF00376 MerR: MerR family reg 21.8 85 0.0018 13.1 1.6 15 63-77 12-26 (38)
351 PF09924 DUF2156: Uncharacteri 21.7 2.2E+02 0.0047 17.8 5.5 54 1-58 192-245 (299)
352 PRK12380 hydrogenase nickel in 21.6 1.5E+02 0.0032 15.8 2.9 38 32-70 4-47 (113)
353 PF02021 UPF0102: Uncharacteri 21.5 1.1E+02 0.0023 15.7 2.0 17 64-80 4-20 (93)
354 COG0375 HybF Zn finger protein 21.5 1.6E+02 0.0034 16.1 3.8 23 33-56 5-27 (115)
355 PRK13901 ruvA Holliday junctio 21.5 1.6E+02 0.0034 17.7 2.9 53 30-82 111-163 (196)
356 COG0020 UppS Undecaprenyl pyro 21.4 1.6E+02 0.0034 18.3 2.9 35 26-61 36-70 (245)
357 PRK03681 hypA hydrogenase nick 21.4 1.5E+02 0.0033 15.9 3.5 38 32-70 4-47 (114)
358 PF02631 RecX: RecX family; I 21.2 1E+02 0.0022 16.3 2.0 20 31-51 3-22 (121)
359 COG0788 PurU Formyltetrahydrof 21.2 31 0.00067 21.7 -0.0 40 39-80 21-60 (287)
360 cd07258 PpCmtC_C C-terminal do 21.1 95 0.0021 16.9 1.9 19 62-80 9-28 (141)
361 TIGR03211 catechol_2_3 catecho 21.0 95 0.0021 19.2 2.1 27 53-80 6-33 (303)
362 TIGR00334 5S_RNA_mat_M5 ribonu 21.0 85 0.0019 18.4 1.7 21 22-42 51-71 (174)
363 PF14097 SpoVAE: Stage V sporu 21.0 2E+02 0.0042 17.0 3.8 41 20-64 55-95 (180)
364 PF12294 DUF3626: Protein of u 21.0 72 0.0016 20.4 1.5 22 20-41 191-212 (297)
365 TIGR03213 23dbph12diox 2,3-dih 20.9 1.1E+02 0.0023 18.8 2.3 28 52-80 4-32 (286)
366 PRK07328 histidinol-phosphatas 20.8 2.2E+02 0.0047 17.5 4.8 37 41-79 212-256 (269)
367 TIGR03081 metmalonyl_epim meth 20.7 1.4E+02 0.003 15.3 2.4 24 55-79 5-29 (128)
368 COG1548 Predicted transcriptio 20.6 2E+02 0.0044 18.4 3.3 37 49-86 276-312 (330)
369 cd07250 HPPD_C_like C-terminal 20.6 81 0.0018 18.3 1.6 30 52-81 4-35 (191)
370 PF00142 Fer4_NifH: 4Fe-4S iro 20.5 1.5E+02 0.0032 18.8 2.7 42 29-70 6-47 (273)
371 PF05063 MT-A70: MT-A70 ; Int 20.5 1.9E+02 0.004 16.6 4.9 30 51-80 45-75 (176)
372 PRK08815 GTP cyclohydrolase; P 20.4 2.8E+02 0.006 18.5 4.3 32 49-82 310-341 (375)
373 PF09754 PAC2: PAC2 family; I 20.4 2E+02 0.0043 16.9 3.7 25 32-57 80-104 (219)
374 PF02799 NMT_C: Myristoyl-CoA: 20.4 2.1E+02 0.0045 17.1 4.0 40 35-78 124-163 (190)
375 cd07257 THT_oxygenase_C The C- 20.3 1.7E+02 0.0036 16.1 2.8 17 63-79 12-29 (153)
376 PRK14686 hypothetical protein; 20.3 1.2E+02 0.0025 16.4 2.0 17 64-80 13-29 (119)
377 COG1832 Predicted CoA-binding 20.3 1.8E+02 0.004 16.4 4.7 30 49-78 95-124 (140)
378 PRK14675 hypothetical protein; 20.2 1.2E+02 0.0025 16.6 2.0 17 64-80 16-32 (125)
379 cd06588 PhnB_like Escherichia 20.2 1.6E+02 0.0034 15.5 2.8 25 57-81 5-30 (128)
380 PHA02456 zinc metallopeptidase 20.1 1.7E+02 0.0037 16.0 3.5 29 18-46 63-91 (141)
381 PF03484 B5: tRNA synthetase B 20.1 1.2E+02 0.0027 14.4 2.1 19 62-80 20-38 (70)
382 PRK10353 3-methyl-adenine DNA 20.1 1.1E+02 0.0023 18.2 2.0 21 65-85 144-164 (187)
383 PRK14689 hypothetical protein; 20.0 1.2E+02 0.0026 16.7 2.1 18 64-81 16-33 (124)
384 PRK12497 hypothetical protein; 20.0 1.3E+02 0.0027 16.2 2.2 16 65-80 15-30 (119)
No 1
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.81 E-value=7.3e-19 Score=88.64 Aligned_cols=75 Identities=24% Similarity=0.357 Sum_probs=69.1
Q ss_pred CccceEEEeecCCC--cCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCce
Q 034552 1 MVGDVNIYMNDLDN--LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 76 (91)
Q Consensus 1 ~VG~~~~~~~~~~~--~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~ 76 (91)
+||++.+....... +..+.|..+.|+|+||++|+|+.|++.++++++ +.+++.+.+.+...|..+++||+++||+
T Consensus 7 ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~-~~g~~~i~~~~~~~n~~~~~~~~k~Gf~ 83 (83)
T PF00583_consen 7 IVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWAR-KRGIKRIYLDVSPDNPAARRFYEKLGFE 83 (83)
T ss_dssp EEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHH-HTTESEEEEEEETTGHHHHHHHHHTTEE
T ss_pred EEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHH-hcCccEEEEEEeCCCHHHHHHHHHcCCC
Confidence 58888888877542 478999999999999999999999999999999 6999999999999999999999999996
No 2
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=99.81 E-value=2.6e-19 Score=98.65 Aligned_cols=82 Identities=20% Similarity=0.266 Sum_probs=74.1
Q ss_pred ccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechh
Q 034552 2 VGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (91)
Q Consensus 2 VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~ 81 (91)
||.+.+......+...++|..++|+++|||+|+|++|++.+++.+. ..|+..|.+.|...|.+|.++|+++||+..++.
T Consensus 69 VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~-~~g~~eVvLeTe~~n~~A~~LY~sLGF~r~~r~ 147 (165)
T KOG3139|consen 69 VGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMR-SRGYSEVVLETEVTNLSALRLYESLGFKRDKRL 147 (165)
T ss_pred EEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHH-HCCCcEEEEeccccchHHHHHHHhcCceEecce
Confidence 6777777766655568999999999999999999999999999999 899999999999999999999999999998876
Q ss_pred hhh
Q 034552 82 EIF 84 (91)
Q Consensus 82 ~~~ 84 (91)
..|
T Consensus 148 ~~Y 150 (165)
T KOG3139|consen 148 FRY 150 (165)
T ss_pred eEE
Confidence 543
No 3
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.78 E-value=1.8e-18 Score=99.51 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=68.6
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+||++.+...+ +..++++.++++|++||+|+|+++++.++++++ +.|++.+.+.+...|.+|++||+|+||+.++.
T Consensus 110 iiG~i~l~~~~---~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~-~~g~~~I~l~v~~~N~~A~~~Y~klGF~~~~~ 185 (191)
T TIGR02382 110 PRGYVTLRELN---DTDARIGLLAVFPGAQSRGIGAELMQTALNWCY-ARGLTRLRVATQMGNTAALRLYIRSGANIEST 185 (191)
T ss_pred EEEEEEEEecC---CCceEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HcCCCEEEEEeCCCCHHHHHHHHHcCCccccc
Confidence 47888876554 245789999999999999999999999999998 79999999999999999999999999998875
Q ss_pred h
Q 034552 81 S 81 (91)
Q Consensus 81 ~ 81 (91)
.
T Consensus 186 ~ 186 (191)
T TIGR02382 186 A 186 (191)
T ss_pred e
Confidence 3
No 4
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=99.77 E-value=2.5e-18 Score=98.92 Aligned_cols=83 Identities=22% Similarity=0.287 Sum_probs=72.0
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+||.+++...+......+++++++ +|+|||+|+|+++++.++++++...+++++.+.+.+.|.+|+++|+|+||+.++.
T Consensus 88 ~iG~i~l~~~~~~~~~~~eig~~i-~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l~ek~Gf~~~g~ 166 (194)
T PRK10809 88 IIGVANFSNVVRGSFHACYLGYSL-GQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDLLARLGFEKEGY 166 (194)
T ss_pred EEEEEEEEeecCCCeeeEEEEEEE-CHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHHHHHCCCcEEee
Confidence 478888887664333568899876 5999999999999999999999668999999999999999999999999999887
Q ss_pred hhhh
Q 034552 81 SEIF 84 (91)
Q Consensus 81 ~~~~ 84 (91)
...+
T Consensus 167 ~~~~ 170 (194)
T PRK10809 167 AKDY 170 (194)
T ss_pred eccc
Confidence 6543
No 5
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=99.76 E-value=7e-18 Score=95.98 Aligned_cols=80 Identities=16% Similarity=0.188 Sum_probs=71.1
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+||.+++...+..+ +.+++++++ +|+|||+|+|+++++.+++++++..+.+++.+.+.+.|.+|+++++|+||+.++.
T Consensus 78 ~iG~~~l~~~~~~~-~~~~ig~~i-~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek~Gf~~~g~ 155 (179)
T PRK10151 78 LIGVLSFNRIEPLN-KTAYIGYWL-DESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALRNGFTLEGC 155 (179)
T ss_pred EEEEEEEEeeccCC-CceEEEEEE-ChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHHCCCEEEeE
Confidence 47888887776544 678999875 7999999999999999999999677999999999999999999999999999987
Q ss_pred hh
Q 034552 81 SE 82 (91)
Q Consensus 81 ~~ 82 (91)
.+
T Consensus 156 ~~ 157 (179)
T PRK10151 156 LK 157 (179)
T ss_pred ec
Confidence 65
No 6
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=99.75 E-value=1.5e-17 Score=93.20 Aligned_cols=79 Identities=24% Similarity=0.271 Sum_probs=67.0
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+||++.+...+. ......+..++|+|++||+|+|+++++.++++++ ..++..+.+.+.+.|.+|+++|+|+||+....
T Consensus 51 ivG~~~~~~~~~-~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~-~~~~~~i~~~v~~~N~~a~~ly~k~G~~~~~~ 128 (157)
T TIGR02406 51 IVGFVSGYLRPD-RPDVLFVWQVAVDPRARGKGLARRLLEALLERVA-CERVRHLETTITPDNQASRALFKALARRRGVH 128 (157)
T ss_pred EEEEEEEEecCC-CCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHH-hCCCCEEEEEEcCCCHHHHHHHHHhCcccCCC
Confidence 478776644332 3356788999999999999999999999999998 67899999999999999999999999987654
Q ss_pred h
Q 034552 81 S 81 (91)
Q Consensus 81 ~ 81 (91)
.
T Consensus 129 ~ 129 (157)
T TIGR02406 129 L 129 (157)
T ss_pred e
Confidence 3
No 7
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=99.74 E-value=3.1e-17 Score=94.56 Aligned_cols=77 Identities=19% Similarity=0.262 Sum_probs=67.9
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+||++.+.... +...+++.++++|+|||+|+|+++++.++++++ +.|++.+.+.+...|.+|.+||+|+||+.++.
T Consensus 113 ~vG~~~l~~~~---~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~-~~g~~~i~l~v~~~N~~a~~~yek~Gf~~~~~ 188 (194)
T PRK10975 113 IQGFVTLRELN---DTDARIGLLAVFPGAQGRGIGARLMQAALNWCQ-ARGLTRLRVATQMGNLAALRLYIRSGANIEST 188 (194)
T ss_pred EEEEEEEEecC---CCceEEEEEEEChhhcCCCHHHHHHHHHHHHHH-HcCCCEEEEEeCCCcHHHHHHHHHCCCeEeEE
Confidence 46777776543 245789999899999999999999999999998 78999999999999999999999999999876
Q ss_pred h
Q 034552 81 S 81 (91)
Q Consensus 81 ~ 81 (91)
.
T Consensus 189 ~ 189 (194)
T PRK10975 189 A 189 (194)
T ss_pred E
Confidence 4
No 8
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.74 E-value=1.1e-17 Score=91.98 Aligned_cols=79 Identities=14% Similarity=0.229 Sum_probs=66.8
Q ss_pred CccceEEEeecCC--CcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceee
Q 034552 1 MVGDVNIYMNDLD--NLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDI 78 (91)
Q Consensus 1 ~VG~~~~~~~~~~--~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~ 78 (91)
+||++.+...... ....++|..++++|++||+|+|+++++.++++++ +.+++.+.+.+...|..|++||+++||+..
T Consensus 58 ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~-~~~~~~i~l~~~~~n~~a~~fY~~~Gf~~~ 136 (144)
T PRK10146 58 VVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEAR-QAGAEMTELSTNVKRHDAHRFYLREGYEQS 136 (144)
T ss_pred EEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHH-HcCCcEEEEecCCCchHHHHHHHHcCCchh
Confidence 4788887654321 1124678899999999999999999999999998 789999999999999999999999999876
Q ss_pred ch
Q 034552 79 SY 80 (91)
Q Consensus 79 ~~ 80 (91)
+.
T Consensus 137 ~~ 138 (144)
T PRK10146 137 HF 138 (144)
T ss_pred hh
Confidence 43
No 9
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=2.9e-17 Score=93.06 Aligned_cols=82 Identities=32% Similarity=0.535 Sum_probs=73.4
Q ss_pred CccceEEEeecC-CCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeec
Q 034552 1 MVGDVNIYMNDL-DNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (91)
Q Consensus 1 ~VG~~~~~~~~~-~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (91)
+||.+++...+. .+...+++++++ +|+++|+|++++++..++++++...+++++.+.+.+.|.+|+++++|+||+..+
T Consensus 79 ~iG~~~~~~~~~~~~~~~~~ig~~l-~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~~S~rv~ek~Gf~~eg 157 (187)
T COG1670 79 LIGVIGLSDIDRAANGDLAEIGYWL-DPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEASIRVYEKLGFRLEG 157 (187)
T ss_pred EEEEEEEEEeccccccceEEEEEEE-ChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCHHHHHHHHHcCChhhh
Confidence 488899987773 344788999999 599999999999999999999988999999999999999999999999999998
Q ss_pred hhhh
Q 034552 80 YSEI 83 (91)
Q Consensus 80 ~~~~ 83 (91)
....
T Consensus 158 ~~~~ 161 (187)
T COG1670 158 ELRQ 161 (187)
T ss_pred hhhh
Confidence 7654
No 10
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.73 E-value=4.7e-17 Score=90.88 Aligned_cols=83 Identities=14% Similarity=0.301 Sum_probs=67.9
Q ss_pred CccceEEEeecCC-CcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeec
Q 034552 1 MVGDVNIYMNDLD-NLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (91)
Q Consensus 1 ~VG~~~~~~~~~~-~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (91)
+||++++...+.. ....++++ +.++|+|||+|+|+++++.++++++...+.+.+.+.+.+.|.+|+++|+++||+..+
T Consensus 62 ~vG~~~~~~~~~~~~~~~~~~~-~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~GF~~~g 140 (162)
T PRK10140 62 VVGHLTIDVQQRPRRSHVADFG-ICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEG 140 (162)
T ss_pred EEEEEEEecccccccceEEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHHHHHHCCCEEEe
Confidence 4788888754321 22456666 566799999999999999999999954799999999999999999999999999998
Q ss_pred hhhhh
Q 034552 80 YSEIF 84 (91)
Q Consensus 80 ~~~~~ 84 (91)
..+.+
T Consensus 141 ~~~~~ 145 (162)
T PRK10140 141 TGKKY 145 (162)
T ss_pred ecccc
Confidence 76533
No 11
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=99.73 E-value=1e-16 Score=87.76 Aligned_cols=74 Identities=36% Similarity=0.634 Sum_probs=64.4
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCce
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 76 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~ 76 (91)
+||.+.+...+.. .+.+++++++. |++||+|+|++++..++++++++.+++++.+.+.+.|.+|+++++++||+
T Consensus 69 ~iG~i~~~~~~~~-~~~~eig~~i~-~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 69 IIGFIGLYNIDKN-NNWAEIGYWIG-PDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp EEEEEEEEEEETT-TTEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred eEEEeeeeecccC-CCccccccchh-HHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 4899999666543 48899997765 89999999999999999999878999999999999999999999999996
No 12
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.72 E-value=5.4e-17 Score=87.61 Aligned_cols=79 Identities=22% Similarity=0.370 Sum_probs=68.0
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+||++.+.... ....+..+.|+|+|||+|+|+++++.++++++ ..+.+.+.+.+...|..+++||+++||+.++.
T Consensus 42 ~vg~~~~~~~~----~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~-~~~~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~ 116 (131)
T TIGR01575 42 VVGYAGVQIVL----DEAHILNIAVKPEYQGQGIGRALLRELIDEAK-GRGVNEIFLEVRVSNIAAQALYKKLGFNEIAI 116 (131)
T ss_pred EEEEEEEEecC----CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HcCCCeEEEEEecccHHHHHHHHHcCCCcccc
Confidence 36777654322 35678888999999999999999999999998 77899999999999999999999999999988
Q ss_pred hhhh
Q 034552 81 SEIF 84 (91)
Q Consensus 81 ~~~~ 84 (91)
.+.+
T Consensus 117 ~~~~ 120 (131)
T TIGR01575 117 RRNY 120 (131)
T ss_pred cccc
Confidence 7654
No 13
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=99.72 E-value=6.1e-17 Score=92.59 Aligned_cols=80 Identities=25% Similarity=0.366 Sum_probs=69.2
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+||.+.+...+..+ ..++++ +.++|+|||+|+|+++++.++++++++.+++++.+.+...|.+|+++|+++||+.++.
T Consensus 68 ~iG~~~~~~~~~~~-~~~~~~-~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek~GF~~~~~ 145 (186)
T PRK15130 68 KAGLVELVEINHVH-RRAEFQ-IIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFEVEGE 145 (186)
T ss_pred EEEEEEEEeecCCC-CeEEEE-EEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHHCCCEEEEE
Confidence 47888887665433 567787 5557999999999999999999999778999999999999999999999999999887
Q ss_pred hh
Q 034552 81 SE 82 (91)
Q Consensus 81 ~~ 82 (91)
.+
T Consensus 146 ~~ 147 (186)
T PRK15130 146 LI 147 (186)
T ss_pred Ee
Confidence 54
No 14
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=99.71 E-value=9.7e-17 Score=89.22 Aligned_cols=81 Identities=28% Similarity=0.484 Sum_probs=69.7
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+||++.+...++ ....++++.++. |++|++|+|+.++..++++++.+.+++.+.+.+.+.|..|++||+++||+.++.
T Consensus 62 iiG~~~~~~~~~-~~~~~~~~~~v~-~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~ 139 (155)
T PF13420_consen 62 IIGYVSLRDIDP-YNHTAELSIYVS-PDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGE 139 (155)
T ss_dssp EEEEEEEEESSS-GTTEEEEEEEEE-GGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEE
T ss_pred EEEEEEEEeeec-cCCEEEEeeEEC-hhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEE
Confidence 589999987776 447889986665 999999999999999999996699999999999999999999999999999987
Q ss_pred hhh
Q 034552 81 SEI 83 (91)
Q Consensus 81 ~~~ 83 (91)
.+.
T Consensus 140 ~~~ 142 (155)
T PF13420_consen 140 LKD 142 (155)
T ss_dssp EEE
T ss_pred Eec
Confidence 654
No 15
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.71 E-value=1.4e-16 Score=88.03 Aligned_cols=79 Identities=16% Similarity=0.296 Sum_probs=66.5
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+||++.+.... ..+.+..++++|+|||+|+|+++++.+++.+. +.+++.+.+.+...|.+|.++|+++||+..+.
T Consensus 51 ~vG~~~~~~~~----~~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~-~~~~~~~~~~~~~~N~~a~~~y~k~Gf~~~~~ 125 (146)
T PRK09491 51 MAAFAITQVVL----DEATLFNIAVDPDYQRQGLGRALLEHLIDELE-KRGVATLWLEVRASNAAAIALYESLGFNEVTI 125 (146)
T ss_pred EEEEEEEEeec----CceEEEEEEECHHHccCCHHHHHHHHHHHHHH-HCCCcEEEEEEccCCHHHHHHHHHcCCEEeee
Confidence 36776665432 34567778899999999999999999999997 78999999999999999999999999998876
Q ss_pred hhhh
Q 034552 81 SEIF 84 (91)
Q Consensus 81 ~~~~ 84 (91)
.+.+
T Consensus 126 ~~~~ 129 (146)
T PRK09491 126 RRNY 129 (146)
T ss_pred eecc
Confidence 5443
No 16
>PRK03624 putative acetyltransferase; Provisional
Probab=99.71 E-value=8.5e-17 Score=87.62 Aligned_cols=76 Identities=21% Similarity=0.297 Sum_probs=64.7
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+||++.+... .....+..+.++|+|||+|+|+++++.+.++++ +.+++.+.+.+.+.|..+.++|+++||+..+.
T Consensus 56 ~vG~~~~~~~----~~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~-~~~~~~~~~~~~~~N~~~~~~y~k~GF~~~~~ 130 (140)
T PRK03624 56 VVGTVMGGYD----GHRGWAYYLAVHPDFRGRGIGRALVARLEKKLI-ARGCPKINLQVREDNDAVLGFYEALGYEEQDR 130 (140)
T ss_pred EEEEEEeecc----CCCceEEEEEECHHHhCCCHHHHHHHHHHHHHH-HCCCCEEEEEEecCcHHHHHHHHHcCCccccE
Confidence 4677665422 134567788899999999999999999999998 78999999999999999999999999998765
Q ss_pred h
Q 034552 81 S 81 (91)
Q Consensus 81 ~ 81 (91)
.
T Consensus 131 ~ 131 (140)
T PRK03624 131 I 131 (140)
T ss_pred E
Confidence 4
No 17
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.71 E-value=1.9e-16 Score=89.56 Aligned_cols=82 Identities=22% Similarity=0.346 Sum_probs=68.2
Q ss_pred ccceEEEeecCCC--cCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCc-cEEEEEecCCcHHHHHHHHhcCceee
Q 034552 2 VGDVNIYMNDLDN--LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGI-HVFRAKIGESNGASLRLFQKLGFEDI 78 (91)
Q Consensus 2 VG~~~~~~~~~~~--~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~-~~v~~~~~~~n~~~~~~~~~~Gf~~~ 78 (91)
+|++......... ...++|..+.|+|+|||+|+|++|++.+++.+. +.+. ..+.+.|.++|.+|+++|+++||+..
T Consensus 74 ~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~-~~~~~~~~~L~V~~~N~~Ai~lY~~~GF~~~ 152 (177)
T COG0456 74 VGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLR-ERGLADKIVLEVRESNEAAIGLYRKLGFEVV 152 (177)
T ss_pred eEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHH-hcCCCceEEEEEecCChHHHHHHHHcCCEEE
Confidence 5666665333111 137899999999999999999999999999998 6675 89999999999999999999999999
Q ss_pred chhhhh
Q 034552 79 SYSEIF 84 (91)
Q Consensus 79 ~~~~~~ 84 (91)
+....|
T Consensus 153 ~~~~~y 158 (177)
T COG0456 153 KIRKNY 158 (177)
T ss_pred eeehhh
Confidence 876644
No 18
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.70 E-value=1.4e-16 Score=88.54 Aligned_cols=81 Identities=25% Similarity=0.328 Sum_probs=69.6
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+||++++...+... ..++++.+ ++|.+| +|+|++++..++++++++.+++.+.+.+...|.+|+++|+++||+.++.
T Consensus 62 ~vG~~~~~~~~~~~-~~~~~g~~-~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k~Gf~~~g~ 138 (156)
T TIGR03585 62 PIGVISFTDINLVH-KSAFWGIY-ANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEKFGFEREGV 138 (156)
T ss_pred EEEEEEEEecChhh-CeEEEEEE-eChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHHcCCeEeee
Confidence 47888887665332 56788877 679999 9999999999999999668999999999999999999999999999997
Q ss_pred hhhh
Q 034552 81 SEIF 84 (91)
Q Consensus 81 ~~~~ 84 (91)
.+.+
T Consensus 139 ~~~~ 142 (156)
T TIGR03585 139 FRQG 142 (156)
T ss_pred ehhh
Confidence 6543
No 19
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=99.68 E-value=5.5e-16 Score=86.12 Aligned_cols=82 Identities=27% Similarity=0.464 Sum_probs=65.5
Q ss_pred CccceEEEeecCC---CcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCcee
Q 034552 1 MVGDVNIYMNDLD---NLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (91)
Q Consensus 1 ~VG~~~~~~~~~~---~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~ 77 (91)
+||++.+.....+ .+....++.++++|++||+|+|+.+++.++++++...+++.+.+.+.+.|.+|+++|+++||+.
T Consensus 59 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~~~~~~~~k~GF~~ 138 (152)
T PF13523_consen 59 PIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNTRAIRLYEKAGFRK 138 (152)
T ss_dssp EEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-HHHHHHHHHTT-EE
T ss_pred EEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCHHHHHHHHHcCCEE
Confidence 3666766543321 2367789999999999999999999999999999655899999999999999999999999999
Q ss_pred echhh
Q 034552 78 ISYSE 82 (91)
Q Consensus 78 ~~~~~ 82 (91)
++...
T Consensus 139 ~g~~~ 143 (152)
T PF13523_consen 139 VGEFE 143 (152)
T ss_dssp EEEEE
T ss_pred eeEEE
Confidence 99765
No 20
>PTZ00330 acetyltransferase; Provisional
Probab=99.68 E-value=5.6e-16 Score=85.42 Aligned_cols=76 Identities=18% Similarity=0.360 Sum_probs=61.9
Q ss_pred CccceEEEeecC---CCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCcee
Q 034552 1 MVGDVNIYMNDL---DNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (91)
Q Consensus 1 ~VG~~~~~~~~~---~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~ 77 (91)
+||++.+...+. .....+++..++|+|+|||+|+|+++++.++++++ +.++..+.+.+ |..|.+||+++||+.
T Consensus 63 ~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~-~~~~~~l~l~~---n~~a~~~y~k~GF~~ 138 (147)
T PTZ00330 63 IVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIAR-SSGCYKVILDC---TEDMVAFYKKLGFRA 138 (147)
T ss_pred EEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HCCCCEEEEec---ChHHHHHHHHCCCEE
Confidence 478887764332 12235788899999999999999999999999998 77888886654 789999999999998
Q ss_pred ech
Q 034552 78 ISY 80 (91)
Q Consensus 78 ~~~ 80 (91)
.+.
T Consensus 139 ~~~ 141 (147)
T PTZ00330 139 CER 141 (147)
T ss_pred ece
Confidence 764
No 21
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.66 E-value=9.4e-16 Score=92.93 Aligned_cols=81 Identities=22% Similarity=0.338 Sum_probs=65.8
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+||++.+.... +.....++..+.|+|+|||+|+|+++++.++++++ +.+++.+.+.+...|..+.+||+++||+..+.
T Consensus 211 ~vG~~~~~~~~-~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~-~~g~~~v~l~v~~~N~~a~~~y~k~GF~~~~~ 288 (292)
T TIGR03448 211 LLGFHWTKVHP-DEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLA-ARGLPAVMLYVEADNEAAVRTYEKLGFTVAEV 288 (292)
T ss_pred EEEEEEEEecC-CCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HCCCCEEEEEEeCCCHHHHHHHHHcCCEEccc
Confidence 35654433222 22245677778899999999999999999999999 67999999999999999999999999998876
Q ss_pred hhh
Q 034552 81 SEI 83 (91)
Q Consensus 81 ~~~ 83 (91)
...
T Consensus 289 ~~~ 291 (292)
T TIGR03448 289 DVA 291 (292)
T ss_pred ccc
Confidence 543
No 22
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.65 E-value=1.8e-15 Score=83.82 Aligned_cols=76 Identities=17% Similarity=0.316 Sum_probs=61.2
Q ss_pred CccceEEEeec---CCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCcee
Q 034552 1 MVGDVNIYMND---LDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (91)
Q Consensus 1 ~VG~~~~~~~~---~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~ 77 (91)
+||.+.+.... ......+.+..++|+|+|||+|+|+++++.++++++ +.+++.+.+.+.+.|. +||+|+||+.
T Consensus 66 ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~-~~g~~~i~l~~~~~N~---~~y~k~GF~~ 141 (150)
T PLN02706 66 IIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHAR-SAGCYKVILDCSEENK---AFYEKCGYVR 141 (150)
T ss_pred EEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HcCCCEEEEEeccccH---HHHHHCcCEE
Confidence 46666664221 111234567778999999999999999999999998 7899999999999995 5999999998
Q ss_pred ech
Q 034552 78 ISY 80 (91)
Q Consensus 78 ~~~ 80 (91)
.+.
T Consensus 142 ~g~ 144 (150)
T PLN02706 142 KEI 144 (150)
T ss_pred ehh
Confidence 874
No 23
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.64 E-value=7.4e-16 Score=92.67 Aligned_cols=80 Identities=24% Similarity=0.146 Sum_probs=68.9
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+||++.+.. +. ....++|..++|+|+|||+|+|++|++.++++++ +.+++.+.+.+...|.+|+++|+++||+..+.
T Consensus 169 iVG~~~~~~-~~-~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~-~~g~~~l~~~~~~~n~~a~~ly~k~GF~~~G~ 245 (266)
T TIGR03827 169 IIALASAEM-DP-ENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMK-EKGIRTAYTIARASSYGMNITFARLGYAYGGT 245 (266)
T ss_pred EEEEEEEec-CC-CCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HCCCcEEEeehhhcchhHHHHHHHcCCccccE
Confidence 467766532 22 2357899999999999999999999999999998 89999999999999999999999999999987
Q ss_pred hhh
Q 034552 81 SEI 83 (91)
Q Consensus 81 ~~~ 83 (91)
...
T Consensus 246 l~n 248 (266)
T TIGR03827 246 LVN 248 (266)
T ss_pred Eee
Confidence 653
No 24
>PRK10314 putative acyltransferase; Provisional
Probab=99.64 E-value=1.4e-15 Score=84.90 Aligned_cols=77 Identities=14% Similarity=0.195 Sum_probs=61.1
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+||++.+...+. ....+.|+.++|+|+|||+|+|++|++.+++++....+...+.+.+ +..+..||+++||+.++.
T Consensus 59 ~vg~~r~~~~~~-~~~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a---~~~a~~fY~k~GF~~~g~ 134 (153)
T PRK10314 59 LVAYARILKSDD-DLEPVVIGRVIVSEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGA---QAHLQNFYQSFGFIPVTE 134 (153)
T ss_pred EEEEEEEecCCC-CCCCEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEeh---HHHHHHHHHHCCCEECCC
Confidence 367777764331 2245799999999999999999999999999998444677777655 567889999999999886
Q ss_pred h
Q 034552 81 S 81 (91)
Q Consensus 81 ~ 81 (91)
.
T Consensus 135 ~ 135 (153)
T PRK10314 135 V 135 (153)
T ss_pred c
Confidence 5
No 25
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=99.60 E-value=1.2e-14 Score=74.17 Aligned_cols=63 Identities=27% Similarity=0.380 Sum_probs=53.0
Q ss_pred CceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+.+.|+.+.++|++|++|+|+.++..+.+.+. +.|.. ..+.+..+|.+|+++|+|+||+....
T Consensus 20 ~~g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~-~~g~~-~~l~v~~~N~~s~~ly~klGf~~~~~ 82 (86)
T PF08445_consen 20 DDGEIGGVYTLPEHRRRGLGSALVAALARELL-ERGKT-PFLYVDADNEASIRLYEKLGFREIEE 82 (86)
T ss_dssp CTCCEEEEEE-GGGTTSSHHHHHHHHHHHHHH-HTTSE-EEEEEETT-HHHHHHHHHCT-EEEEE
T ss_pred CCcEEEEEEECHHHcCCCHHHHHHHHHHHHHH-hCCCc-EEEEEECCCHHHHHHHHHcCCEEEEE
Confidence 34899999999999999999999999999998 56655 56889999999999999999998754
No 26
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.60 E-value=1e-14 Score=94.93 Aligned_cols=80 Identities=18% Similarity=0.232 Sum_probs=66.6
Q ss_pred CccceEEEeec---CCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCcee
Q 034552 1 MVGDVNIYMND---LDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (91)
Q Consensus 1 ~VG~~~~~~~~---~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~ 77 (91)
+||++.+.... .+....+++..++|+|+|||+|+|++|++.++++++ +.|+..+.+.+..+|..+++||+++||+.
T Consensus 136 IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~-~~G~~~i~L~V~~~N~~Ai~fY~klGf~~ 214 (547)
T TIGR03103 136 IIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQ-SRGCAYMDLSVMHDNEQAIALYEKLGFRR 214 (547)
T ss_pred EEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HCCCCEEEEEEcCCCHHHHHHHHHCCCEE
Confidence 47777653321 111234688999999999999999999999999998 88999999999999999999999999998
Q ss_pred echh
Q 034552 78 ISYS 81 (91)
Q Consensus 78 ~~~~ 81 (91)
+...
T Consensus 215 ~~~y 218 (547)
T TIGR03103 215 IPVF 218 (547)
T ss_pred eeEE
Confidence 7643
No 27
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.59 E-value=2.2e-14 Score=71.91 Aligned_cols=66 Identities=26% Similarity=0.538 Sum_probs=52.2
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCcee
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~ 77 (91)
+||++.+.... +...|..++|+|++||+|+|+.+++.+.+.+. . ..+.+.+ ++.+..||+++||++
T Consensus 14 ivG~~~~~~~~----~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~-~---~~i~l~~---~~~~~~fY~~~GF~~ 79 (79)
T PF13508_consen 14 IVGFIRLWPNE----DFAYIGYLAVDPEYRGKGIGSKLLNYLLEKAK-S---KKIFLFT---NPAAIKFYEKLGFEE 79 (79)
T ss_dssp EEEEEEEEETT----TEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHT-C---SEEEEEE---EHHHHHHHHHTTEEE
T ss_pred EEEEEEEEEcC----CEEEEEEEEECHHHcCCCHHHHHHHHHHHHcC-C---CcEEEEE---cHHHHHHHHHCcCCC
Confidence 46777773322 47899999999999999999999999988875 3 4455555 678999999999985
No 28
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=2e-14 Score=78.63 Aligned_cols=91 Identities=42% Similarity=0.697 Sum_probs=81.1
Q ss_pred CccceEEEeecCCC-------cCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhc
Q 034552 1 MVGDVNIYMNDLDN-------LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 73 (91)
Q Consensus 1 ~VG~~~~~~~~~~~-------~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~ 73 (91)
+||.++++..+..+ -..+++...+..|..||+|+|++++.+++.|+....++.+....+..+|.+++++|.++
T Consensus 84 MvGDvNlFlt~~~~~~n~s~~~~~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk~ 163 (185)
T KOG4135|consen 84 MVGDVNLFLTTSPDTENPSDDVITGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKKF 163 (185)
T ss_pred hccceeeEEecCCCcCCcccceeeeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHHh
Confidence 58999999876443 24678999999999999999999999999999988899999999999999999999999
Q ss_pred CceeechhhhhhhhhhcC
Q 034552 74 GFEDISYSEIFKEAVDSL 91 (91)
Q Consensus 74 Gf~~~~~~~~~~~~~~~~ 91 (91)
+|..+.....|+.+++++
T Consensus 164 ~f~q~~~ns~f~~v~Le~ 181 (185)
T KOG4135|consen 164 LFTQVFYNSSFPHVTLEL 181 (185)
T ss_pred hheeeeeeccccceEEec
Confidence 999999988888887764
No 29
>PRK07757 acetyltransferase; Provisional
Probab=99.57 E-value=2.8e-14 Score=79.24 Aligned_cols=73 Identities=23% Similarity=0.344 Sum_probs=60.0
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+||++.+...+ +..+++..++|+|+|||+|+|+++++.+++++. +.++..+.+.+. +.+||+|+||++.+.
T Consensus 52 lvG~~~l~~~~---~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~-~~g~~~i~~~~~-----~~~~Y~k~GF~~~~~ 122 (152)
T PRK07757 52 IVGCCALHILW---EDLAEIRSLAVSEDYRGQGIGRMLVEACLEEAR-ELGVKRVFALTY-----QPEFFEKLGFREVDK 122 (152)
T ss_pred EEEEEEEEecc---CCceEEEEEEECHHHcCCCHHHHHHHHHHHHHH-hCCCCeEEEEeC-----cHHHHHHCCCEEccc
Confidence 47788776443 356789899999999999999999999999998 789988876553 358999999999876
Q ss_pred hh
Q 034552 81 SE 82 (91)
Q Consensus 81 ~~ 82 (91)
..
T Consensus 123 ~~ 124 (152)
T PRK07757 123 EA 124 (152)
T ss_pred cc
Confidence 43
No 30
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=99.56 E-value=4.1e-14 Score=77.64 Aligned_cols=79 Identities=18% Similarity=0.199 Sum_probs=69.1
Q ss_pred CccceEEEeec--CCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceee
Q 034552 1 MVGDVNIYMND--LDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDI 78 (91)
Q Consensus 1 ~VG~~~~~~~~--~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~ 78 (91)
++|++.++..- +......+|..++|.|+||++|+|+.|++.+-+.+. +.|+.++.+.|.+.|..|+.+|++.|++..
T Consensus 66 ~aGf~~yf~~ystW~~k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~-~~G~~rv~w~vldwN~rAi~lY~k~gaq~l 144 (163)
T KOG3216|consen 66 VAGFALYFNNYSTWLGKQGIYLEDLYVREQYRGKGIGSKLLKFVAEEAD-KLGTPRVEWVVLDWNHRAILLYEKVGAQDL 144 (163)
T ss_pred eeEEeeeecccccccccceEEEEeeEecchhcccChHHHHHHHHHHHHH-HcCCCcEEEEEeccchhHHHHHHHhCcccc
Confidence 46777776653 223367899999999999999999999999999998 899999999999999999999999999977
Q ss_pred ch
Q 034552 79 SY 80 (91)
Q Consensus 79 ~~ 80 (91)
..
T Consensus 145 ~~ 146 (163)
T KOG3216|consen 145 KE 146 (163)
T ss_pred ce
Confidence 65
No 31
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.54 E-value=7.2e-14 Score=79.19 Aligned_cols=72 Identities=22% Similarity=0.362 Sum_probs=59.0
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+||++.+.... ...++|..++|+|++||+|+|+++++.++++++ +.|++.+.+.+. +.+||+|+||+.++.
T Consensus 57 iiG~~~~~~~~---~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~-~~g~~~l~~~~~-----~~~fY~k~GF~~~~~ 127 (169)
T PRK07922 57 VVGCGALHVMW---EDLAEIRTVAVDPAARGRGVGHAIVERLLDVAR-ELGLSRVFVLTF-----EVEFFARHGFVEIDG 127 (169)
T ss_pred EEEEEEEeecC---CCceEEEEEEECHHHhCCCHHHHHHHHHHHHHH-HcCCCEEEEEec-----cHHHHHHCCCEECcc
Confidence 46666654432 246789999999999999999999999999999 899999987664 267999999999865
Q ss_pred h
Q 034552 81 S 81 (91)
Q Consensus 81 ~ 81 (91)
.
T Consensus 128 ~ 128 (169)
T PRK07922 128 T 128 (169)
T ss_pred c
Confidence 4
No 32
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.54 E-value=6.8e-14 Score=86.13 Aligned_cols=73 Identities=19% Similarity=0.288 Sum_probs=62.9
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEec--CCcHHHHHHHHhcCceee
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIG--ESNGASLRLFQKLGFEDI 78 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~--~~n~~~~~~~~~~Gf~~~ 78 (91)
+||++.+... ...++|..++++|++||+|+|+.+++.+.+.++ +.|++.+.+.+. ..|..+++||+++||+.+
T Consensus 245 ivG~~~~~~~----~~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~-~~G~~~i~l~v~~~~~N~~A~~fY~~~GF~~~ 319 (320)
T TIGR01686 245 IIGIFVFEKK----EGNLFIDDLCMSCRALGRGVETRMLRWLFEQAL-DLGNHNARLYYRRTERNMPFLSFYEQIGFEDE 319 (320)
T ss_pred eEEEEEEEec----CCcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHH-HcCCCeEEEEEeeCCCchHHHHHHHHcCCccC
Confidence 4666665432 257889999999999999999999999999999 789999999874 579999999999999865
No 33
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.53 E-value=1.1e-13 Score=73.64 Aligned_cols=63 Identities=25% Similarity=0.413 Sum_probs=50.4
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCc
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf 75 (91)
+||++.+. . ..+|..+.|+|+|||+|+|++|++.+++.++ . +.+.+.+. .|..+.+||+++||
T Consensus 55 ivG~~~~~---~----~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~-~-~~~~l~~~---~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 55 IVGFAWLE---P----DGEISHLYVLPEYRGRGIGRALLDAAEKEAK-D-GIRRLTVE---ANERARRFYRKLGF 117 (117)
T ss_dssp EEEEEEEE---T----CEEEEEEEE-GGGTTSSHHHHHHHHHHHHHT-T-TCEEEEEE---C-HHHHHHHHHTT-
T ss_pred EEEEEEEc---C----CCeEEEEEEChhhcCCcHHHHHHHHHHHHHH-c-CCcEEEEE---eCHHHHHHHHhCCC
Confidence 46777764 1 2238889999999999999999999999986 5 88877766 89999999999998
No 34
>PHA01807 hypothetical protein
Probab=99.53 E-value=6.8e-14 Score=78.09 Aligned_cols=72 Identities=14% Similarity=0.166 Sum_probs=58.8
Q ss_pred CccceEEEeecCCC-cCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhc
Q 034552 1 MVGDVNIYMNDLDN-LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 73 (91)
Q Consensus 1 ~VG~~~~~~~~~~~-~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~ 73 (91)
+||++.+....... .....+..++|+|+|||+|+|+.|++.++++++ +.|+..+.+.+...|.+++++|++.
T Consensus 64 lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar-~~G~~~l~l~v~~~n~~a~~~y~~~ 136 (153)
T PHA01807 64 LAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAG-EGNLPLIAFSHREGEGRYTIHYRRV 136 (153)
T ss_pred EEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHH-HCCCCEEEEEecCCcHHHHHHHHhc
Confidence 47887776444221 123345557999999999999999999999998 7899999999999999999999975
No 35
>PRK10514 putative acetyltransferase; Provisional
Probab=99.51 E-value=1e-13 Score=76.35 Aligned_cols=57 Identities=23% Similarity=0.457 Sum_probs=48.8
Q ss_pred eEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechhh
Q 034552 20 VEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (91)
Q Consensus 20 i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (91)
+..++++|+|||+|+|+++++.+.+.+ +.+.+.+...|.+|++||+|+||+..+..+
T Consensus 72 ~~~~~v~p~~rgkGig~~Ll~~~~~~~------~~i~~~v~~~N~~a~~~yek~Gf~~~~~~~ 128 (145)
T PRK10514 72 MEALFVDPDVRGCGVGRMLVEHALSLH------PELTTDVNEQNEQAVGFYKKMGFKVTGRSE 128 (145)
T ss_pred EeEEEECHHhccCCHHHHHHHHHHHhc------cccEEEeecCCHHHHHHHHHCCCEEecccc
Confidence 456788999999999999999988754 346788899999999999999999987643
No 36
>PHA00673 acetyltransferase domain containing protein
Probab=99.49 E-value=3.1e-13 Score=75.18 Aligned_cols=79 Identities=14% Similarity=0.206 Sum_probs=65.9
Q ss_pred CccceEEEeecC---CCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCcee
Q 034552 1 MVGDVNIYMNDL---DNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (91)
Q Consensus 1 ~VG~~~~~~~~~---~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~ 77 (91)
+||++.+...+. .....+.|..+.|+|++||+|+|++|++.++++++ +.|+..++++..++ ...+.||.++|+++
T Consensus 66 vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar-~~Gc~~lyis~~p~-~~tv~fy~~~g~~~ 143 (154)
T PHA00673 66 LVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALAR-DLGATGLYVSGPTE-GRLVQLLPAAGYRE 143 (154)
T ss_pred EEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHH-HCCCCEEEEecCCC-ccchHHHHhCCchh
Confidence 478777777652 22356799999999999999999999999999999 89999999986653 34779999999998
Q ss_pred echh
Q 034552 78 ISYS 81 (91)
Q Consensus 78 ~~~~ 81 (91)
..+.
T Consensus 144 ~~~~ 147 (154)
T PHA00673 144 TNRT 147 (154)
T ss_pred hchh
Confidence 7654
No 37
>PRK10562 putative acetyltransferase; Provisional
Probab=99.49 E-value=2.4e-13 Score=75.07 Aligned_cols=68 Identities=15% Similarity=0.285 Sum_probs=54.4
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+||++.+... ..++.+.++|+|||+|+|+.+++.+++. .+.+.+.+...|..|++||+|+||+.++.
T Consensus 59 ~iG~~~~~~~-------~~i~~~~v~~~~rg~G~g~~ll~~~~~~------~~~~~~~v~~~N~~s~~~y~k~Gf~~~~~ 125 (145)
T PRK10562 59 LLGFVSVLEG-------RFVGALFVAPKAVRRGIGKALMQHVQQR------YPHLSLEVYQKNQRAVNFYHAQGFRIVDS 125 (145)
T ss_pred EEEEEEEeec-------cEEEEEEECHHHcCCCHHHHHHHHHHhh------CCeEEEEEEcCChHHHHHHHHCCCEEccc
Confidence 3566665321 2577789999999999999988877663 34678888999999999999999999886
Q ss_pred h
Q 034552 81 S 81 (91)
Q Consensus 81 ~ 81 (91)
.
T Consensus 126 ~ 126 (145)
T PRK10562 126 A 126 (145)
T ss_pred c
Confidence 4
No 38
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.47 E-value=9.4e-13 Score=74.23 Aligned_cols=81 Identities=28% Similarity=0.367 Sum_probs=65.6
Q ss_pred ccceEEEeecCCC--cCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeec
Q 034552 2 VGDVNIYMNDLDN--LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (91)
Q Consensus 2 VG~~~~~~~~~~~--~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (91)
+|++.+....... ..+++.+. +++|+.||+|+|+++++.+++.+. ..|++.+.+.+..+|.+|+++++++||+.++
T Consensus 65 ~G~a~~~~fr~r~ay~~tve~Si-Yv~~~~~g~GiG~~Ll~~Li~~~~-~~g~~~lva~I~~~n~aSi~lh~~~GF~~~G 142 (169)
T COG1247 65 LGYASAGPFRERPAYRHTVELSI-YLDPAARGKGLGKKLLQALITEAR-ALGVRELVAGIESDNLASIALHEKLGFEEVG 142 (169)
T ss_pred EEEEEeeeccCccccceEEEEEE-EECcccccccHHHHHHHHHHHHHH-hCCeEEEEEEEcCCCcHhHHHHHHCCCEEec
Confidence 4555555544222 23445544 557999999999999999999999 8999999999999999999999999999999
Q ss_pred hhhhh
Q 034552 80 YSEIF 84 (91)
Q Consensus 80 ~~~~~ 84 (91)
..+..
T Consensus 143 ~~~~v 147 (169)
T COG1247 143 TFPEV 147 (169)
T ss_pred ccccc
Confidence 77644
No 39
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.47 E-value=2.7e-13 Score=89.41 Aligned_cols=78 Identities=22% Similarity=0.244 Sum_probs=63.3
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+||++.+...+ +..++|..++|+|+|||+|+|+.|++.++++++ +.|++.+.+.+ .+.+||+++||+.++.
T Consensus 514 IVG~~~l~~~~---~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak-~~g~~~i~l~~-----~a~~FYek~GF~~~~~ 584 (614)
T PRK12308 514 VTGCASLYIYD---SGLAEIRSLGVEAGWQVQGQGSALVQYLVEKAR-QMAIKKVFVLT-----RVPEFFMKQGFSPTSK 584 (614)
T ss_pred EEEEEEEEEcC---CCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HCCCCEEEEee-----CcHHHHHHCCCEECCc
Confidence 47888776443 246789999999999999999999999999998 78999888754 2468999999999987
Q ss_pred hhhhhhh
Q 034552 81 SEIFKEA 87 (91)
Q Consensus 81 ~~~~~~~ 87 (91)
...-..+
T Consensus 585 ~~~~~~~ 591 (614)
T PRK12308 585 SLLPEKV 591 (614)
T ss_pred ccCChHH
Confidence 7643333
No 40
>PLN02825 amino-acid N-acetyltransferase
Probab=99.46 E-value=4.7e-13 Score=86.44 Aligned_cols=74 Identities=16% Similarity=0.266 Sum_probs=63.0
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+||++.+.... .+..++|..++|+|+|||+|+|++|++.+++.++ +.|++.+.+.+ +.+.+||+++||+..+.
T Consensus 418 IVG~aal~~~~--~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar-~~G~~~L~Llt----t~a~~fY~k~GF~~~~~ 490 (515)
T PLN02825 418 IIACAALFPFF--EEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAA-SLGLEKLFLLT----TRTADWFVRRGFSECSI 490 (515)
T ss_pred EEEEEEEEeec--CCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HCCCCEEEEEe----CcHHHHHHHCCCEEeCh
Confidence 47888776543 2367899999999999999999999999999999 88999998876 24689999999999876
Q ss_pred h
Q 034552 81 S 81 (91)
Q Consensus 81 ~ 81 (91)
.
T Consensus 491 ~ 491 (515)
T PLN02825 491 E 491 (515)
T ss_pred h
Confidence 4
No 41
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.45 E-value=4.2e-13 Score=74.07 Aligned_cols=74 Identities=20% Similarity=0.302 Sum_probs=63.6
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+||++.+.+.. ..+.++|..++|+|++|++|+|..|++.++..|+ +.|++++++-+. .+..||+++||+.++.
T Consensus 51 viGC~aL~~~~--~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar-~~gi~~lf~LTt----~~~~~F~~~GF~~vd~ 123 (153)
T COG1246 51 VIGCAALHPVL--EEDLGELRSLAVHPDYRGSGRGERLLERLLADAR-ELGIKELFVLTT----RSPEFFAERGFTRVDK 123 (153)
T ss_pred EEEEEeecccC--ccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHH-HcCCceeeeeec----ccHHHHHHcCCeECcc
Confidence 47778777533 2478999999999999999999999999999999 999999998764 4668999999999886
Q ss_pred h
Q 034552 81 S 81 (91)
Q Consensus 81 ~ 81 (91)
.
T Consensus 124 ~ 124 (153)
T COG1246 124 D 124 (153)
T ss_pred c
Confidence 3
No 42
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=99.44 E-value=3.6e-13 Score=76.33 Aligned_cols=81 Identities=17% Similarity=0.089 Sum_probs=72.2
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+||+.++...-..++.+++...+-+.+.||++|+|+.|++.+...+. ....+.|.++|...|.+|+.||.++||.....
T Consensus 104 ~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~-~~~~~kVmLTVf~~N~~al~Fy~~~gf~~~~~ 182 (202)
T KOG2488|consen 104 LVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLAD-SRHMRKVMLTVFSENIRALGFYHRLGFVVDEE 182 (202)
T ss_pred eeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHH-HHHhhhheeeeecccchhHHHHHHcCcccCCC
Confidence 47888888876666678899999999999999999999999999987 78889999999999999999999999998776
Q ss_pred hh
Q 034552 81 SE 82 (91)
Q Consensus 81 ~~ 82 (91)
.+
T Consensus 183 sp 184 (202)
T KOG2488|consen 183 SP 184 (202)
T ss_pred CC
Confidence 54
No 43
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.44 E-value=8.2e-13 Score=84.33 Aligned_cols=74 Identities=16% Similarity=0.279 Sum_probs=60.8
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+||++.+..... ...++|..++|+|+|||+|+|++|++.+++++. +.+++.+.+.+ ..+.+||+++||+.++.
T Consensus 345 iVG~~~~~~~~~--~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~-~~g~~~l~l~~----~~a~~fY~k~GF~~~g~ 417 (441)
T PRK05279 345 IIGCAALYPFPE--EKMGEMACLAVHPDYRGSGRGERLLKRIEQRAR-QLGLKRLFVLT----TRTAHWFLERGFVPVDV 417 (441)
T ss_pred EEEEEEEEEcCC--CCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HcCCCEEEEec----chHHHHHHHCcCEECCh
Confidence 467776654432 356899999999999999999999999999998 78998886542 45889999999999986
Q ss_pred h
Q 034552 81 S 81 (91)
Q Consensus 81 ~ 81 (91)
.
T Consensus 418 ~ 418 (441)
T PRK05279 418 D 418 (441)
T ss_pred h
Confidence 4
No 44
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.43 E-value=8.4e-13 Score=80.51 Aligned_cols=57 Identities=26% Similarity=0.399 Sum_probs=52.0
Q ss_pred eeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeec
Q 034552 19 EVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (91)
Q Consensus 19 ~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (91)
.|..++|+|+|||+|+|++|++.++++++ +.|++.+.+.+...| ..||+++||+..+
T Consensus 27 ~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~-~~g~~~i~L~t~~~~---~~fYek~GF~~~~ 83 (297)
T cd02169 27 VLKCVAVCPKYQGEGLALKIVSELINKAY-EEGIFHLFLFTKPKN---AKFFRGLGFKELA 83 (297)
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHH-HCCCCEEEEEEcccH---HHHHHHCCCEEec
Confidence 58899999999999999999999999998 789999999886554 5899999999988
No 45
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.42 E-value=9.2e-13 Score=79.92 Aligned_cols=72 Identities=17% Similarity=0.195 Sum_probs=58.4
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+||++.+..... ...++..++|+|+|||+|+|++|++.+++.+. ..+.+.+...|..+++||+++||+....
T Consensus 57 ~vG~~~~~~~~~---~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~-----~~~~~~~~~~n~~a~~fy~~~Gf~~~~~ 128 (292)
T TIGR03448 57 IVGYANLVPARG---TDPAMAELVVHPAHRRRGIGRALIRALLAKGG-----GRLRVWAHGDLPAARALASRLGLVPTRE 128 (292)
T ss_pred EEEEEEEEcCCC---CcceEEEEEECHhhcCCCHHHHHHHHHHHhcc-----CceEEEEcCCCHHHHHHHHHCCCEEccE
Confidence 467777654432 33578889999999999999999999998764 3467778889999999999999998764
No 46
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.40 E-value=1.7e-12 Score=82.66 Aligned_cols=74 Identities=16% Similarity=0.278 Sum_probs=60.7
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+||++.+.... .+..+++..++|+|+|||+|+|++|++.+++++. +.|++.+.+. ..| +.+||+++||+.++.
T Consensus 333 iVG~~~~~~~~--~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~-~~G~~~l~v~--~~~--a~~fY~k~GF~~~g~ 405 (429)
T TIGR01890 333 IIGCAALYPYA--EEDCGEMACLAVSPEYQDGGRGERLLAHIEDRAR-QMGISRLFVL--TTR--TGHWFRERGFQTASV 405 (429)
T ss_pred EEEEEEEEecC--CCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HcCCCEEEEe--ecc--hHHHHHHCCCEECCh
Confidence 47777776543 2357899999999999999999999999999999 7899887543 334 579999999999987
Q ss_pred h
Q 034552 81 S 81 (91)
Q Consensus 81 ~ 81 (91)
.
T Consensus 406 ~ 406 (429)
T TIGR01890 406 D 406 (429)
T ss_pred h
Confidence 4
No 47
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=99.38 E-value=3.9e-12 Score=75.49 Aligned_cols=68 Identities=25% Similarity=0.352 Sum_probs=58.4
Q ss_pred CCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechh
Q 034552 12 LDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (91)
Q Consensus 12 ~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~ 81 (91)
..++..+.|.-+.++|+|||+||++.++..+-..+. ..|.. ..+.+...|..|.++|+++||+..+..
T Consensus 196 a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL-~eGk~-~~L~~~~~N~~A~~iY~riGF~~~g~~ 263 (268)
T COG3393 196 AENPAYAQINGVYTHPEYRGKGYATALVATLAAKLL-AEGKI-PCLFVNSDNPVARRIYQRIGFREIGEF 263 (268)
T ss_pred ccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHH-hCCCe-eEEEEecCCHHHHHHHHHhCCeecceE
Confidence 445678999999999999999999999999999888 45554 346677999999999999999998854
No 48
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=99.36 E-value=1.7e-12 Score=72.94 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=66.1
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+||...+...... ++.+.+..++|+.+.||+|+|+.+++.++.|++ ..+.+.+++++.+.. +||+++||+..+.
T Consensus 68 VigH~rLS~i~n~-~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R-~~gf~~~yLsT~DQ~----~FYe~lGYe~c~P 141 (225)
T KOG3397|consen 68 VLGHSRLSHLPNR-DHALWVESVVVKKDQRGLGFGKFLMKSTEKWMR-EKGFNEAYLSTDDQC----RFYESLGYEKCDP 141 (225)
T ss_pred eeeeeccccCCCC-CceeEEEEEEEehhhccccHHHHHHHHHHHHHH-Hhhhhheeeecccch----hhhhhhcccccCc
Confidence 3566666655544 488999999999999999999999999999999 788999999988875 8999999998776
Q ss_pred hhhhh
Q 034552 81 SEIFK 85 (91)
Q Consensus 81 ~~~~~ 85 (91)
+..+.
T Consensus 142 i~~~~ 146 (225)
T KOG3397|consen 142 IVHST 146 (225)
T ss_pred eeccc
Confidence 55443
No 49
>PRK09831 putative acyltransferase; Provisional
Probab=99.36 E-value=2.6e-12 Score=71.12 Aligned_cols=55 Identities=11% Similarity=0.380 Sum_probs=45.9
Q ss_pred eeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechhh
Q 034552 19 EVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (91)
Q Consensus 19 ~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (91)
.+..++++|++||+|+|+.|++.+++.+. . + .+. .|..+++||+++||+.++..+
T Consensus 74 ~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~-~-----l--~v~-~~~~a~~~Y~k~Gf~~~g~~~ 128 (147)
T PRK09831 74 YIDMLFVDPEYTRRGVASALLKPLIKSES-E-----L--TVD-ASITAKPFFERYGFQTVKQQR 128 (147)
T ss_pred eeeeEEECHHHcCCCHHHHHHHHHHHHhh-h-----e--Eee-cchhhHHHHHHCCCEEeeccc
Confidence 56778899999999999999999999876 3 2 233 357899999999999998754
No 50
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.36 E-value=5.8e-12 Score=67.90 Aligned_cols=72 Identities=22% Similarity=0.400 Sum_probs=54.3
Q ss_pred CccceEEEeecC--CC--cCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCce
Q 034552 1 MVGDVNIYMNDL--DN--LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 76 (91)
Q Consensus 1 ~VG~~~~~~~~~--~~--~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~ 76 (91)
+||.+.+..... .+ -+.+.+..++|+|+|||+|+++.|++.+++.++ +.++..+.+.. .+..+|+++||+
T Consensus 52 ivg~~~~~~~~~~~~g~~~~~~~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~-~~g~~~~~l~~-----~~~~~Y~~~G~~ 125 (127)
T PF13527_consen 52 IVGHVGLIPRRLSVGGKKFKAAYIGDVAVDPEYRGRGLGRQLMRALLERAR-ERGVPFIFLFP-----SSPPFYRRFGFE 125 (127)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHH-HTT-SEEEEE------SSHHHHHHTTEE
T ss_pred EEEEEEEEEEEEEECCEEEEEEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-hCCCCEEEEec-----CChhhhhcCCCE
Confidence 467777766531 11 246899999999999999999999999999998 67888777655 225899999998
Q ss_pred ee
Q 034552 77 DI 78 (91)
Q Consensus 77 ~~ 78 (91)
.+
T Consensus 126 ~~ 127 (127)
T PF13527_consen 126 YA 127 (127)
T ss_dssp EE
T ss_pred EC
Confidence 63
No 51
>PRK13688 hypothetical protein; Provisional
Probab=99.34 E-value=5.9e-12 Score=70.58 Aligned_cols=58 Identities=24% Similarity=0.339 Sum_probs=44.6
Q ss_pred cCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechh
Q 034552 15 LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (91)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~ 81 (91)
+..++|..++|+|+|||+|+|++|++.+. +.++. + .+...| .+.+||+++||+.++..
T Consensus 77 ~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~-----~~~~~-~--~~~~~~-~a~~FY~k~GF~~~~~~ 134 (156)
T PRK13688 77 QDYLELWKLEVLPKYQNRGYGEMLVDFAK-----SFQLP-I--KTIARN-KSKDFWLKLGFTPVEYK 134 (156)
T ss_pred CCeEEEEEEEECHHHcCCCHHHHHHHHHH-----HhCCe-E--EEEecc-chHHHHHhCCCEEeEEe
Confidence 36689999999999999999999987543 33333 2 234445 57899999999998865
No 52
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=99.34 E-value=4.1e-12 Score=64.41 Aligned_cols=62 Identities=29% Similarity=0.484 Sum_probs=58.2
Q ss_pred CceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeec
Q 034552 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (91)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (91)
..+++...++.|+||++|+.+.++....+.+. +.|+. ++.++.+.|..++++..++||....
T Consensus 18 qtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~-~~g~P-~Y~hv~~~N~~~~r~~~~lg~~~~p 79 (89)
T PF08444_consen 18 QTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLH-KLGFP-FYGHVDEDNEASQRLSKSLGFIFMP 79 (89)
T ss_pred ccccccccccCHhHhcCCHHHHHHHHHHHHHH-HCCCC-eEeehHhccHHHHHHHHHCCCeecC
Confidence 68899999999999999999999999999998 88888 8899999999999999999999764
No 53
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=99.29 E-value=8.2e-12 Score=71.35 Aligned_cols=71 Identities=15% Similarity=0.266 Sum_probs=63.7
Q ss_pred ceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechhhhhhhh
Q 034552 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKEA 87 (91)
Q Consensus 17 ~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~~~~~~ 87 (91)
..+|-.+.|.|+||..|+|+.+++.+.+++.....++.+.+++...|..++.||++.||+++...+.|..+
T Consensus 89 ~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~~~~~~y~~ 159 (187)
T KOG3138|consen 89 VIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEKRGFEIVERLKNYYSI 159 (187)
T ss_pred eeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHhcCceEeecccccccc
Confidence 37789999999999999999999999999993334899999999999999999999999999998877544
No 54
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.27 E-value=2.5e-11 Score=65.64 Aligned_cols=60 Identities=20% Similarity=0.353 Sum_probs=55.3
Q ss_pred CceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeec
Q 034552 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (91)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (91)
..+.|..++|++++||+++|+.++..+...++ ..|+-.+.+.|.+.| ..||+++||+..+
T Consensus 84 ~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k-~lgcYKi~LdC~~~n---v~FYeKcG~s~~~ 143 (150)
T KOG3396|consen 84 SRGHIEDVVVDSEYRGKQLGKLLVETLVDLAK-SLGCYKIILDCDPKN---VKFYEKCGYSNAG 143 (150)
T ss_pred ccCceeEEEeChhhhhhHHhHHHHHHHHHHHH-hcCcEEEEEecchhh---hhHHHHcCccccc
Confidence 56789999999999999999999999999999 999999999998877 4599999999766
No 55
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=99.24 E-value=4e-11 Score=67.20 Aligned_cols=80 Identities=23% Similarity=0.177 Sum_probs=67.8
Q ss_pred CccceEEEeecCCC--cCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceee
Q 034552 1 MVGDVNIYMNDLDN--LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDI 78 (91)
Q Consensus 1 ~VG~~~~~~~~~~~--~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~ 78 (91)
+||.++++..-.+. ..-++|++-+. |+.|++|||+++++.+++.|+ +.|++.|-++|+.+|.+|.+.-+++|=...
T Consensus 80 ivG~i~lRh~Ln~~ll~~gGHIGY~Vr-PseR~KGYA~emLkl~L~~ar-~lgi~~Vlvtcd~dN~ASrkvI~~NGGile 157 (174)
T COG3981 80 IVGFINLRHQLNDFLLEEGGHIGYSVR-PSERRKGYAKEMLKLALEKAR-ELGIKKVLVTCDKDNIASRKVIEANGGILE 157 (174)
T ss_pred EEEEEEeeeecchHHHhcCCcccceeC-hhhhccCHHHHHHHHHHHHHH-HcCCCeEEEEeCCCCchhhHHHHhcCCEEe
Confidence 47888887764221 13578888886 999999999999999999999 999999999999999999999999998877
Q ss_pred chhh
Q 034552 79 SYSE 82 (91)
Q Consensus 79 ~~~~ 82 (91)
.+..
T Consensus 158 ~~~~ 161 (174)
T COG3981 158 NEFF 161 (174)
T ss_pred EEEc
Confidence 6543
No 56
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=99.23 E-value=6.3e-11 Score=65.77 Aligned_cols=84 Identities=23% Similarity=0.279 Sum_probs=70.6
Q ss_pred CccceEEEeec--CCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHH-hcCcee
Q 034552 1 MVGDVNIYMND--LDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQ-KLGFED 77 (91)
Q Consensus 1 ~VG~~~~~~~~--~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~-~~Gf~~ 77 (91)
|||++...... .++++.+.|..+.|...||+.|++++|+.....-..+..+.+.|.++|..+|.+|+.+|. .+||+.
T Consensus 53 iVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY~~tl~F~v 132 (193)
T KOG3235|consen 53 IVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLYKNTLGFVV 132 (193)
T ss_pred EEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhhhhccceEE
Confidence 46777666554 233457899999999999999999999999887666677999999999999999999999 999999
Q ss_pred echhhhh
Q 034552 78 ISYSEIF 84 (91)
Q Consensus 78 ~~~~~~~ 84 (91)
.+..+.|
T Consensus 133 ~eve~kY 139 (193)
T KOG3235|consen 133 CEVEPKY 139 (193)
T ss_pred eeccccc
Confidence 9876554
No 57
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.23 E-value=5e-11 Score=73.80 Aligned_cols=60 Identities=18% Similarity=0.261 Sum_probs=53.9
Q ss_pred eeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechhh
Q 034552 19 EVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (91)
Q Consensus 19 ~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (91)
.+..++|+|+|||+|+|+.|+..+++.+. +.|+..+.+.+.+.| .+||+++||.+.+..+
T Consensus 52 ~ik~vaV~~~~rG~Glg~~L~~~L~~~a~-~~G~~~l~l~Tk~~~---~~fy~klGF~~i~~~~ 111 (332)
T TIGR00124 52 VIKCVAIDESLRGEGLALQLMTELENLAY-ELGRFHLFIFTKPEY---AALFEYCGFKTLAEAK 111 (332)
T ss_pred EEEEEEEcHHHcCCCHHHHHHHHHHHHHH-HcCCCEEEEEECchH---HHHHHHcCCEEeeeec
Confidence 48899999999999999999999999999 889999999887655 4699999999988655
No 58
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=99.21 E-value=1e-10 Score=66.19 Aligned_cols=77 Identities=14% Similarity=0.246 Sum_probs=64.3
Q ss_pred CccceEEEeecCC--CcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceee
Q 034552 1 MVGDVNIYMNDLD--NLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDI 78 (91)
Q Consensus 1 ~VG~~~~~~~~~~--~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~ 78 (91)
+||.+.+...... .....-+..+.|+|++||||+|++|++..++.++ ..|...+.+.=++ .+|.++||++.
T Consensus 57 vvG~Il~s~v~~~g~~~~~~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~-~~G~~~v~vlGdp------~YY~rfGF~~~ 129 (171)
T COG3153 57 VVGHILFSPVTVGGEELGWLGLAPLAVDPEYQGQGIGSALVREGLEALR-LAGASAVVVLGDP------TYYSRFGFEPA 129 (171)
T ss_pred EEEEEEEeEEEecCcccceEEEEeEEEchhhcCCcHHHHHHHHHHHHHH-HCCCCEEEEecCc------ccccccCcEEc
Confidence 4788888887755 3467789999999999999999999999999999 8999988775544 38999999998
Q ss_pred chhhhh
Q 034552 79 SYSEIF 84 (91)
Q Consensus 79 ~~~~~~ 84 (91)
.....+
T Consensus 130 ~~~~l~ 135 (171)
T COG3153 130 AGAKLY 135 (171)
T ss_pred cccccc
Confidence 765443
No 59
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=99.20 E-value=8.8e-11 Score=64.22 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=59.3
Q ss_pred ccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechh
Q 034552 2 VGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (91)
Q Consensus 2 VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~ 81 (91)
|+++.+.+..... ....|+.++++|++||+|+|.+|+..+++.+.+...-+.+.+.. ....+.||.++||..++..
T Consensus 62 vAyaRLl~~~~~~-~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~A---QahLq~fYa~~GFv~~~e~ 137 (155)
T COG2153 62 VAYARLLPPGAEY-EEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGA---QAHLQDFYASFGFVRVGEE 137 (155)
T ss_pred EEEEecCCCCCCc-CceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEeh---HHHHHHHHHHhCcEEcCch
Confidence 3444444444333 23679999999999999999999999999999666566666655 5568999999999998765
Q ss_pred h
Q 034552 82 E 82 (91)
Q Consensus 82 ~ 82 (91)
-
T Consensus 138 y 138 (155)
T COG2153 138 Y 138 (155)
T ss_pred h
Confidence 4
No 60
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.18 E-value=1.7e-10 Score=74.95 Aligned_cols=77 Identities=14% Similarity=0.086 Sum_probs=58.3
Q ss_pred CccceEEEeecCC-----CcCceeeEEee-----------eCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcH
Q 034552 1 MVGDVNIYMNDLD-----NLELAEVEIMI-----------AEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNG 64 (91)
Q Consensus 1 ~VG~~~~~~~~~~-----~~~~~~i~~~~-----------v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~ 64 (91)
+||++.+...... .+..+.|..+. .+|+||++|+|+.|++.++++++ +.|++.+.+. .|.
T Consensus 425 l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar-~~G~~~i~v~---s~~ 500 (522)
T TIGR01211 425 LIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAA-EEGSEKILVI---SGI 500 (522)
T ss_pred EEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHH-HCCCCEEEEe---eCc
Confidence 4677777755421 12344444444 25899999999999999999999 7799999863 378
Q ss_pred HHHHHHHhcCceeechh
Q 034552 65 ASLRLFQKLGFEDISYS 81 (91)
Q Consensus 65 ~~~~~~~~~Gf~~~~~~ 81 (91)
.+++||+++||+..+..
T Consensus 501 ~A~~FY~klGf~~~g~y 517 (522)
T TIGR01211 501 GVREYYRKLGYELDGPY 517 (522)
T ss_pred hHHHHHHHCCCEEEcce
Confidence 99999999999987753
No 61
>PRK01346 hypothetical protein; Provisional
Probab=99.17 E-value=1.7e-10 Score=73.16 Aligned_cols=75 Identities=21% Similarity=0.304 Sum_probs=57.8
Q ss_pred CccceEEEeecCC---C--cCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCc
Q 034552 1 MVGDVNIYMNDLD---N--LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75 (91)
Q Consensus 1 ~VG~~~~~~~~~~---~--~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf 75 (91)
+||++.+...... . -+...|..+.|+|+|||+|+|++|++.+++.++ +.|...+.+.+.. ..||+++||
T Consensus 58 lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~-~~g~~~~~L~~~~-----~~~Y~r~Gf 131 (411)
T PRK01346 58 VVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIR-ERGEPVAALTASE-----GGIYGRFGY 131 (411)
T ss_pred EEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHH-HCCCcEEEEECCc-----hhhHhhCCC
Confidence 4666666543211 1 146889999999999999999999999999998 7888777776543 369999999
Q ss_pred eeechh
Q 034552 76 EDISYS 81 (91)
Q Consensus 76 ~~~~~~ 81 (91)
......
T Consensus 132 ~~~~~~ 137 (411)
T PRK01346 132 GPATYS 137 (411)
T ss_pred eeccce
Confidence 987653
No 62
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=99.16 E-value=1.7e-10 Score=63.85 Aligned_cols=81 Identities=16% Similarity=0.127 Sum_probs=65.4
Q ss_pred cceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechhh
Q 034552 3 GDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (91)
Q Consensus 3 G~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (91)
|++..........-..++.-+.|.|+||+.|+|+.++..+.+..- ..+.--+.+.+..+|+.|+.+|+++||..-..+.
T Consensus 55 gyimgk~Eg~~~~wh~HvTAltVap~~Rrl~la~~lm~~led~~d-~~~a~fvDLfVr~sN~iAI~mYkkLGY~~YR~Vi 133 (173)
T KOG3234|consen 55 GYIMGKVEGKDTEWHGHVTALTVAPDYRRLGLAAKLMDTLEDVSD-VDNAYFVDLFVRVSNQIAIDMYKKLGYSVYRTVI 133 (173)
T ss_pred EEEeeeccccCcceeeEEEEEEechhHHHHHHHHHHHHHHHHHHH-hhhhheeeeeeeccchhHHHHHHhcCceEEEeee
Confidence 444443333333345788999999999999999999999999887 5677888999999999999999999999887765
Q ss_pred hh
Q 034552 83 IF 84 (91)
Q Consensus 83 ~~ 84 (91)
.|
T Consensus 134 ~Y 135 (173)
T KOG3234|consen 134 EY 135 (173)
T ss_pred ee
Confidence 44
No 63
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=99.05 E-value=1.3e-09 Score=51.22 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=45.8
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEE
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRA 57 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~ 57 (91)
+||++.+...+. .++.+++..+.++|+||++|++++++..++++++ +.+.+.+.+
T Consensus 10 ~ig~~~~~~~~~-~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~-~~~~~~v~~ 64 (65)
T cd04301 10 IVGFASLSPDGS-GGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEAR-ERGAKRLRL 64 (65)
T ss_pred EEEEEEEEecCC-CCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHH-HcCCcEEEe
Confidence 467777776554 2478999999999999999999999999999999 678887764
No 64
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=99.00 E-value=5e-09 Score=63.17 Aligned_cols=64 Identities=28% Similarity=0.306 Sum_probs=50.3
Q ss_pred CceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechhhhh
Q 034552 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIF 84 (91)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~~~ 84 (91)
..++|+.-. +|+|||+|+++.+...++.+|. +.++...+- + .|.+|+++.+++||+.......|
T Consensus 188 ~~~EI~I~T-~~~yR~kGLA~~~aa~~I~~Cl-~~~l~P~WD-c--~N~~S~~lA~kLGf~~~~~Y~~Y 251 (265)
T PF12746_consen 188 NGIEIDIET-HPEYRGKGLATAVAAAFILECL-ENGLYPSWD-C--HNLASIALAEKLGFHFDFEYTAY 251 (265)
T ss_dssp TEEEEEEEE--CCCTTSSHHHHHHHHHHHHHH-HTT-EEE-E-E--SSHHHHHHHHHCT--EEEEEEEE
T ss_pred CEEEEEEEE-CHHhhcCCHHHHHHHHHHHHHH-HCCCCcCee-C--CCHHHHHHHHHcCCcccceeeee
Confidence 567888877 5999999999999999999999 777776544 4 59999999999999998765544
No 65
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=98.91 E-value=8.5e-09 Score=59.62 Aligned_cols=69 Identities=17% Similarity=0.271 Sum_probs=47.5
Q ss_pred CceeeEEeeeCccccCcchHHHHHHHHHHHHH------------------------hhcCccEEEEEecCCcHHHHHHHH
Q 034552 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAV------------------------ENFGIHVFRAKIGESNGASLRLFQ 71 (91)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~------------------------~~~~~~~v~~~~~~~n~~~~~~~~ 71 (91)
..+.|-+++|+|++|++|+|+++++.+.+++. ...+++.+-++... +....+|+.
T Consensus 89 ~g~RIvRIAvhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~-t~~Ll~FW~ 167 (196)
T PF13718_consen 89 SGARIVRIAVHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGA-TPELLKFWQ 167 (196)
T ss_dssp EEEEEEEEEE-CCC-SSSHHHHHHHHHHHT-----------------------------S-SEEEEEEE---HHHHHHHH
T ss_pred cceeEEEEEEChhhhcCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCC-CHHHHHHHH
Confidence 35678899999999999999999999999992 25678877776554 678999999
Q ss_pred hcCceeechhhhhh
Q 034552 72 KLGFEDISYSEIFK 85 (91)
Q Consensus 72 ~~Gf~~~~~~~~~~ 85 (91)
|+||.++.....-.
T Consensus 168 k~gf~pv~l~~~~n 181 (196)
T PF13718_consen 168 KNGFVPVYLGQTRN 181 (196)
T ss_dssp CTT-EEEEE-SS--
T ss_pred HCCcEEEEEecCcc
Confidence 99999987654333
No 66
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=98.79 E-value=7.5e-09 Score=57.40 Aligned_cols=62 Identities=10% Similarity=0.120 Sum_probs=51.4
Q ss_pred CceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
....|+.++++|+||.+|+|..|+...++++-++.-.+++.+.+ .++.+.||+++||+.++.
T Consensus 100 ~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~---h~pLvPFYEr~gFk~vgp 161 (190)
T KOG4144|consen 100 HNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALIC---HDPLVPFYERFGFKAVGP 161 (190)
T ss_pred cceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeee---cCCccchhHhcCceeecc
Confidence 45889999999999999999999999777666466666666655 446889999999999987
No 67
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=98.71 E-value=2.3e-07 Score=50.29 Aligned_cols=67 Identities=21% Similarity=0.372 Sum_probs=58.9
Q ss_pred cCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEec--CCcHHHHHHHHhcCceeechhh
Q 034552 15 LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIG--ESNGASLRLFQKLGFEDISYSE 82 (91)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~--~~n~~~~~~~~~~Gf~~~~~~~ 82 (91)
++..+++.++|...-||+|+++++...+.+++. ..|...+.+.+. +.|++|..|.-.+||.++|.-.
T Consensus 82 e~F~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae-~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ 150 (167)
T COG3818 82 ENFFYVDRVVVASRARGRGVARALYADLFSYAE-LAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQAT 150 (167)
T ss_pred CceEEEEEEEEEecccccchHHHHHHHHHHHHH-hcCCceEEEEecCCCCChHHHHHhhhcCceEccceE
Confidence 356789999999999999999999999999998 788888888765 4599999999999999998643
No 68
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=98.62 E-value=1.3e-07 Score=63.72 Aligned_cols=67 Identities=15% Similarity=0.234 Sum_probs=56.1
Q ss_pred ceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechhhhhhh
Q 034552 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKE 86 (91)
Q Consensus 17 ~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~~~~~ 86 (91)
-..|..++|+|+++++|+|+++++.+.+++. .+++.+.++... +....+|+.|+||.++...+..+.
T Consensus 531 G~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~--~~~DwlgvsFG~-t~~L~rFW~rnGF~pVhls~~rn~ 597 (758)
T COG1444 531 GWRIVRIAVHPELQRMGIGSRLLALLIEEAR--KGLDWLGVSFGY-TEELLRFWLRNGFVPVHLSPTRNA 597 (758)
T ss_pred eeeEEEEEeCHHHHhcCHHHHHHHHHHHHHh--cCCCEEeeccCC-CHHHHHHHHHcCeEEEEecCccCc
Confidence 4679999999999999999999999999985 577877665443 678999999999999987765443
No 69
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=98.58 E-value=6.2e-07 Score=44.87 Aligned_cols=48 Identities=23% Similarity=0.364 Sum_probs=36.8
Q ss_pred ccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccE
Q 034552 2 VGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHV 54 (91)
Q Consensus 2 VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~ 54 (91)
+|.+.+.. +++...+....|.|++||+|+|+.|++.+++++. +.+.+.
T Consensus 11 ~a~l~Y~~----~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~-~~~~kv 58 (78)
T PF14542_consen 11 IAELTYRE----DGGVIVITHTEVPPELRGQGIAKKLVEAALDYAR-ENGLKV 58 (78)
T ss_dssp EEEEEEEE----SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHH-HTT-EE
T ss_pred EEEEEEEe----CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHH-HCCCEE
Confidence 34455533 3478888888999999999999999999999998 666663
No 70
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=98.36 E-value=1.2e-06 Score=45.05 Aligned_cols=44 Identities=30% Similarity=0.528 Sum_probs=39.2
Q ss_pred eeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCc
Q 034552 23 MIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75 (91)
Q Consensus 23 ~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf 75 (91)
+.++|++||+|+|+.+++.+++++. ..++. .|..+..++.+.||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~-~~g~~--------~~~~~~~~~~~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWAR-KRGIS--------LNRLALEVYEKNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHH-HcCce--------ehHHHHHHHHhcCC
Confidence 8889999999999999999999998 55555 68889999999988
No 71
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=98.33 E-value=1.3e-06 Score=54.33 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=50.0
Q ss_pred CceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+.+.|..+.++|.|||+|+.++|+...++... +.|+.-..++. .+.++|+|+||..-..
T Consensus 69 ~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~-~kG~p~s~L~P-----~s~~iYrKfGye~asn 127 (389)
T COG4552 69 PTAGIAGVASAPTYRRRGALRALLAHSLREIA-RKGYPVSALHP-----FSGGIYRKFGYEYASN 127 (389)
T ss_pred eccceEEEEechhhccCcHHHHHHHHHHHHHH-HcCCeeEEecc-----CchhhHhhccccccce
Confidence 56789999999999999999999999999998 78888666533 4668999999987554
No 72
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=98.17 E-value=3.1e-05 Score=41.97 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=42.5
Q ss_pred CceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecC----CcHHHHHHHHhcCceeec
Q 034552 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGE----SNGASLRLFQKLGFEDIS 79 (91)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~----~n~~~~~~~~~~Gf~~~~ 79 (91)
..+.++.+.|.+--|++|+|..|++.+.+.+ .+++...+.... +-..+..|...+||...+
T Consensus 60 ~~~~L~~l~VRevTRrRGVG~yLlee~~rq~---p~i~~w~l~~~~~~~~~~~~~~~Fm~a~GF~~~~ 124 (128)
T PF12568_consen 60 QQAELSDLCVREVTRRRGVGLYLLEEVLRQL---PDIKHWWLADEGVEPQDRAVMAAFMQACGFSAQS 124 (128)
T ss_dssp TEEEEEEEEE-TT-SSSSHHHHHHHHHHHHS----S--EEEE--TT-S--THHHHHHHHHHHT-EE-S
T ss_pred cceEEeeEEEeeccccccHHHHHHHHHHHHC---CCCcEEEEecCCCcccchHHHHHHHHHcCccccC
Confidence 6889999999999999999999999998875 456666655443 336677889999997643
No 73
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=98.01 E-value=1.6e-05 Score=41.44 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=35.0
Q ss_pred cCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEE
Q 034552 15 LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFR 56 (91)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~ 56 (91)
++...|..-.|.+.+||||+|+.|++.+++.++ +.|.+.+-
T Consensus 37 ~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar-~~g~kiiP 77 (99)
T COG2388 37 ENLIIIDHTYVPDELRGQGIAQKLVEKALEEAR-EAGLKIIP 77 (99)
T ss_pred CCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHH-HcCCeEcc
Confidence 467788888899999999999999999999998 77776443
No 74
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=97.96 E-value=6.3e-05 Score=46.15 Aligned_cols=60 Identities=22% Similarity=0.293 Sum_probs=53.7
Q ss_pred eeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechhh
Q 034552 19 EVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (91)
Q Consensus 19 ~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (91)
-|..++++|.+||-|++-+++.++++++. ++|...+.+.+.+. ..++|..+||.++...+
T Consensus 58 vikcvAvs~s~qGeGl~lkl~TeLin~ay-~~g~~hLFiyTKp~---~~~lFk~~GF~~i~~~~ 117 (352)
T COG3053 58 VIKCVAVSESLQGEGLALKLVTELINLAY-ERGRTHLFIYTKPE---YAALFKQCGFSEIASAE 117 (352)
T ss_pred eeEEEEechhcccccHHHHHHHHHHHHHH-HcCCceEEEEechh---HHHHHHhCCceEeeccC
Confidence 37888999999999999999999999999 89999999999776 56799999999887654
No 75
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=97.86 E-value=0.0001 Score=39.58 Aligned_cols=71 Identities=15% Similarity=0.137 Sum_probs=47.3
Q ss_pred CccceEEEeecC-CCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCce
Q 034552 1 MVGDVNIYMNDL-DNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 76 (91)
Q Consensus 1 ~VG~~~~~~~~~-~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~ 76 (91)
+||++.+-.... ..+....+..+.+..+||++|+|+++++.+....+ + .-...+...|.+|+.++++.-+.
T Consensus 48 ~igf~l~L~~~~~~~~iD~~~~efFIi~k~~~~GvGR~aaK~If~~~~---g--~w~Va~i~EN~PA~~fwK~~~~t 119 (143)
T COG5628 48 PVGFALVLDLAHSPTPIDRAVAEFFIVRKHRRRGVGRAAAKAIFGSAW---G--VWQVATVRENTPARAFWKRVAET 119 (143)
T ss_pred eeeeeeeecccCCCCcccccchheEeeehhhccchhHHHHHHHHHHhh---c--eEEEEEeccCChhHHHHHhhhcc
Confidence 456665554431 11223345555555899999999999998866554 2 23444778899999999998665
No 76
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=97.55 E-value=0.00027 Score=34.55 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=27.5
Q ss_pred CceeeEEeeeCccccCcchHHHHHHHHHHHH
Q 034552 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYA 46 (91)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~ 46 (91)
-.+.|+.+.|+|.+|++|+++.|++.+.+..
T Consensus 4 a~~GI~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 4 AVCGISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred EEEEeEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 3578999999999999999999999998763
No 77
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=97.40 E-value=0.0021 Score=37.12 Aligned_cols=62 Identities=18% Similarity=0.321 Sum_probs=48.1
Q ss_pred CcCceeeEEeeeCccccC------cchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeec
Q 034552 14 NLELAEVEIMIAEPKSRG------KGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (91)
Q Consensus 14 ~~~~~~i~~~~v~~~~r~------~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (91)
.+...|++.+.++|+.++ .-+...|+..+.+++. ..|++.+.+-+ +..+.+++.++||....
T Consensus 87 ~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e~a~-~~gi~~~v~V~---~~~~~r~l~r~G~~~~~ 154 (182)
T PF00765_consen 87 SPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVEFAL-SNGIRHIVGVV---DPAMERILRRAGWPVRR 154 (182)
T ss_dssp STTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHHHHH-CTT-SEEEEEE---EHHHHHHHHHCT-EEEE
T ss_pred CCcceeeeEEEEcccccccccccccHHHHHHHHHHHHHHH-HCCCCEEEEEE---ChHHHHHHHHcCCceEE
Confidence 357899999999987432 1356799999999999 89999998766 56799999999998764
No 78
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=97.38 E-value=0.0034 Score=37.01 Aligned_cols=62 Identities=8% Similarity=0.086 Sum_probs=49.3
Q ss_pred CcCceeeEEeeeCccccCc---c----hHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeec
Q 034552 14 NLELAEVEIMIAEPKSRGK---G----LAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (91)
Q Consensus 14 ~~~~~~i~~~~v~~~~r~~---G----~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (91)
.++.+|++.+.++|+++.. + +...|+..+.+++. ..|++.+.+.+.. ...+++.++|+....
T Consensus 96 ~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~-~~Gi~~~~~v~~~---~~~r~l~r~G~~~~~ 164 (207)
T PRK13834 96 HPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSM-ANGYTEIVTATDL---RFERILARAGWPMQR 164 (207)
T ss_pred CCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHH-HCCCCEEEEEECH---HHHHHHHHcCCCeEE
Confidence 4578999999999886322 2 55689999999998 8999999877644 688899999987643
No 79
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=97.35 E-value=0.002 Score=38.82 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=49.9
Q ss_pred cCceeeEEeeeCccccCc--------c--------------------hHHHHHHHHHHHHHhhcCccEEEEEecCCcHHH
Q 034552 15 LELAEVEIMIAEPKSRGK--------G--------------------LAKDAVLMMMAYAVENFGIHVFRAKIGESNGAS 66 (91)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~--------G--------------------~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~ 66 (91)
+..+|++.+.|+|++|++ | +...|+..+.+++. ..|++.+.+.+.. ..
T Consensus 109 ~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~-~~Gi~~~~~v~~~---~l 184 (241)
T TIGR03694 109 SRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSS-ANGITHWYAIMEP---RL 184 (241)
T ss_pred CceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHH-HCCCcEEEEEeCH---HH
Confidence 578999999999999974 1 45679999999999 8999999887744 68
Q ss_pred HHHHHhcCceee
Q 034552 67 LRLFQKLGFEDI 78 (91)
Q Consensus 67 ~~~~~~~Gf~~~ 78 (91)
.+++.++|+...
T Consensus 185 ~r~l~r~G~~~~ 196 (241)
T TIGR03694 185 ARLLSRFGIQFR 196 (241)
T ss_pred HHHHHHhCCceE
Confidence 889999997654
No 80
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=97.24 E-value=0.0035 Score=33.72 Aligned_cols=72 Identities=15% Similarity=0.143 Sum_probs=45.3
Q ss_pred ccceEEEeecCCCc-----CceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCce
Q 034552 2 VGDVNIYMNDLDNL-----ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 76 (91)
Q Consensus 2 VG~~~~~~~~~~~~-----~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~ 76 (91)
||.=.++..+..+. +..-+-.++|+++.|++|+|++|++.++.. .++....+.++.-......|.+|. |.
T Consensus 26 VG~K~Lfl~d~~g~~~e~~~~~cvLDFyVhes~QR~G~Gk~LF~~ML~~----e~~~p~~~a~DrPS~Kll~Fl~Kh-y~ 100 (120)
T PF05301_consen 26 VGYKKLFLLDERGQHREIEPLLCVLDFYVHESRQRRGYGKRLFDHMLQE----ENVSPHQLAIDRPSPKLLSFLKKH-YG 100 (120)
T ss_pred EeeeeEEEEcCCCCEEEecccceeeeEEEEeceeccCchHHHHHHHHHH----cCCCcccceecCCcHHHHHHHHHh-cC
Confidence 34444555554332 122345566789999999999999998774 334444555666666777777654 44
Q ss_pred ee
Q 034552 77 DI 78 (91)
Q Consensus 77 ~~ 78 (91)
..
T Consensus 101 L~ 102 (120)
T PF05301_consen 101 LQ 102 (120)
T ss_pred CC
Confidence 33
No 81
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=97.21 E-value=0.001 Score=43.28 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=41.2
Q ss_pred CccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 26 EPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 26 ~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
...||.+|+|++|++.+.+.|. +.+..++...- -..++..|.++||...+.
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~-ee~~~ki~viS---giG~ReYy~k~GY~~~gp 509 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAR-EEGAKKILVIS---GIGVREYYRKLGYELDGP 509 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHH-hhccccEEEEe---cccHHHHHHHhCccccCC
Confidence 3689999999999999999999 55566665432 346889999999998764
No 82
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=97.20 E-value=0.0056 Score=35.38 Aligned_cols=61 Identities=21% Similarity=0.244 Sum_probs=40.6
Q ss_pred cCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHH-hcCceeech
Q 034552 15 LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQ-KLGFEDISY 80 (91)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~-~~Gf~~~~~ 80 (91)
.....++.+.++|+|||+|+++.+-+.+.+... ..+-. ..+ ..+..+.++|. -+||...+.
T Consensus 76 ~pl~~~G~~w~~p~yRg~~~~kl~~~~~~~~~~-~~~~N-~~~---~~~~~~~~~w~k~~G~~~~~h 137 (181)
T PF06852_consen 76 KPLQFIGFFWIDPEYRGKGIMKLQDDICMDELD-SVDDN-SVA---QGNVKMSNFWHKMFGFDDYGH 137 (181)
T ss_pred CCeEEEeeeeeCCcccCcchHHHHHHHHHHHhc-cCCCc-eee---ecCHHHHHHHHHHhCCCCCcc
Confidence 467899999999999999999644444445444 32333 323 23556677775 678877666
No 83
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=97.13 E-value=0.0014 Score=41.48 Aligned_cols=52 Identities=19% Similarity=0.144 Sum_probs=41.7
Q ss_pred ccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechh
Q 034552 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (91)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~ 81 (91)
.+||.||+|+.+++++...++.+.|-..+...-. ...++.|.++||+..+..
T Consensus 497 ~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISG---VGtR~YY~klGY~LdGPY 548 (554)
T KOG2535|consen 497 TKFQHQGFGTLLMEEAERIAREEHGSGKIAVISG---VGTRNYYRKLGYELDGPY 548 (554)
T ss_pred hhhhhcchhhHHHHHHHHHHHHhcCCCceEEEec---cchHHHHHhhCeeecChh
Confidence 4699999999999999999997777776654332 246789999999987753
No 84
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.10 E-value=0.00066 Score=44.48 Aligned_cols=63 Identities=13% Similarity=0.202 Sum_probs=53.7
Q ss_pred CceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecC--CcHHHHHHHHhcCceeec
Q 034552 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGE--SNGASLRLFQKLGFEDIS 79 (91)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~--~n~~~~~~~~~~Gf~~~~ 79 (91)
....|+.+..+-+.=|+++-++++..+.+.+. ..|+..+.....+ .|.....||+++||+..+
T Consensus 485 ~~w~IDt~lmSCRVlgRkvE~~l~~~~~e~A~-~~gi~tir~~Y~pt~kN~pv~~FyE~mgf~l~~ 549 (574)
T COG3882 485 SEWFIDTFLMSCRVLGRKVEQRLMNSLEEQAL-SEGINTIRGYYIPTEKNAPVSDFYERMGFKLKG 549 (574)
T ss_pred CeEEhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcceeeeEecccccCCcHHHHHHHhcccccc
Confidence 56777777777777789999999999999999 8899999988544 599999999999999655
No 85
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=96.87 E-value=0.00044 Score=44.90 Aligned_cols=62 Identities=19% Similarity=0.365 Sum_probs=45.4
Q ss_pred CceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEE-----ecCCcHHHHHHHHhcCceee
Q 034552 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAK-----IGESNGASLRLFQKLGFEDI 78 (91)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~-----~~~~n~~~~~~~~~~Gf~~~ 78 (91)
..+.|..++|||+||+.|+|...+.+++++.. ++-++.+.-. +...-..-..|+++.||+-.
T Consensus 240 aaariarvvvhpdyr~dglg~~sv~~a~ewI~-eRriPEmr~rkHlvetiaqmarynpffe~~gfkyl 306 (593)
T COG2401 240 AAARIARVVVHPDYRADGLGQLSVIAALEWII-ERRIPEMRPRKHLVETIAQMARYNPFFEKVGFKYL 306 (593)
T ss_pred hhhheeEEEeccccccCccchhHHHHHHHHHH-HhhChhhhhhhhHHHHHHHHHhcCchhhhhceeee
Confidence 45789999999999999999999999999998 6656655433 11111112247889999854
No 86
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=96.75 E-value=0.004 Score=32.55 Aligned_cols=51 Identities=8% Similarity=0.064 Sum_probs=40.1
Q ss_pred cCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHH
Q 034552 15 LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQ 71 (91)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~ 71 (91)
...++|+.+++.|..|++|++..++..+.+. .+.+.....++|+.-.-+++
T Consensus 32 ~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d------~~~L~Wrsr~~n~~n~Wyf~ 82 (99)
T cd04264 32 NGVPYLDKFAVSSSAQGEGTSDALWRRLRRD------FPKLFWRSRKTNPINPWYFK 82 (99)
T ss_pred CCceEEEEEEEchhhhhcChHHHHHHHHHhh------CCceEEEeCCCCcccceEEE
Confidence 3789999999999999999999999988654 35678888877764433333
No 87
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=96.39 E-value=0.0071 Score=31.63 Aligned_cols=51 Identities=8% Similarity=0.052 Sum_probs=39.5
Q ss_pred cCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHH
Q 034552 15 LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQ 71 (91)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~ 71 (91)
+..++|+.+++.|..|++|++..+++.+.+. .+.+...+.++|+.-.-+++
T Consensus 32 ~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d------~~~L~Wrsr~~n~~n~Wyf~ 82 (99)
T cd04265 32 DGVPYLDKFAVSSSAQGEGTGEALWRRLRRD------FPKLFWRSRSTNPINPWYFK 82 (99)
T ss_pred CCceEEEEEEEchhhhhcChHHHHHHHHHhh------CCceEEEeCCCCcccceEEE
Confidence 3788999999999999999999999988654 23577888877754433333
No 88
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=96.31 E-value=0.067 Score=29.43 Aligned_cols=77 Identities=16% Similarity=0.157 Sum_probs=58.4
Q ss_pred ccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechh
Q 034552 2 VGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (91)
Q Consensus 2 VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~ 81 (91)
+|.+.+.... +...+-+.++ +|++|| ++.+.-...-+|+.++.....+...+...-...+-+-.=+|.+.++..
T Consensus 50 ~Gi~~v~~i~---~~~vecHa~y-~P~fRG--~a~~~~~~F~kwlL~Ns~f~~vit~vp~kt~~Grvic~llg~~RVG~i 123 (151)
T PF11039_consen 50 GGIVYVEEIQ---PSVVECHAMY-DPGFRG--YALEIGRLFCKWLLENSPFQNVITFVPDKTRYGRVICRLLGARRVGHI 123 (151)
T ss_pred EEEEEEEEEe---eeeEEEEeee-ccccch--hHHHHHHHHHHHHhcCCceeEEEEecccccccchhHhhhhCCceeeeH
Confidence 3445555444 3467777777 499998 888888888888887778888888777777777777788999999987
Q ss_pred hhh
Q 034552 82 EIF 84 (91)
Q Consensus 82 ~~~ 84 (91)
+++
T Consensus 124 d~~ 126 (151)
T PF11039_consen 124 DDY 126 (151)
T ss_pred HHH
Confidence 654
No 89
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=96.26 E-value=0.031 Score=32.50 Aligned_cols=31 Identities=10% Similarity=0.139 Sum_probs=25.3
Q ss_pred ceeeEEeeeCccccCcchHHHHHHHHHHHHH
Q 034552 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 47 (91)
Q Consensus 17 ~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~ 47 (91)
.-.+..+.+.|.||++|+|+.|++..=...+
T Consensus 80 ~~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr 110 (188)
T PF01853_consen 80 NNNLSCILTLPPYQRKGYGRFLIDFSYELSR 110 (188)
T ss_dssp -EEESEEEE-GGGTTSSHHHHHHHHHHHHHH
T ss_pred CeeEeehhhcchhhhcchhhhhhhhHHHHhh
Confidence 4578889999999999999999998766666
No 90
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=95.86 E-value=0.041 Score=33.01 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=51.9
Q ss_pred ceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHH-HhcCceeechhhhh
Q 034552 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLF-QKLGFEDISYSEIF 84 (91)
Q Consensus 17 ~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~-~~~Gf~~~~~~~~~ 84 (91)
..+-+...+.|+++++|+|-+|...--+.+. .+|+..+.++.++-|..-.+|. .|+|-.-.-..++|
T Consensus 74 y~ySH~~gV~e~~k~sglg~aLK~~Qre~a~-~~G~tli~WTfDPl~alNA~fNi~KLGa~artYi~nf 141 (266)
T COG3375 74 YLYSHMLGVREEVKGSGLGVALKMKQRERAL-SMGYTLIAWTFDPLNALNARFNISKLGAIARTYIKNF 141 (266)
T ss_pred eeeeeehhccccccccchhhhhHHHHHHHHH-hcCeeeEEEecccchhhhhhcchhhhceeEEEeeccc
Confidence 5567778899999999999999999999998 8999999999999885544443 46665544444433
No 91
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=95.81 E-value=0.08 Score=30.08 Aligned_cols=56 Identities=16% Similarity=0.193 Sum_probs=40.6
Q ss_pred CccceEEEeecC----CCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcC-ccEEEE
Q 034552 1 MVGDVNIYMNDL----DNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFG-IHVFRA 57 (91)
Q Consensus 1 ~VG~~~~~~~~~----~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~-~~~v~~ 57 (91)
+||+++..+... ..-..++|.++-++++.|.++++--|++++.+.+. ..| .+.+++
T Consensus 90 LvgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn-~~gI~qAvyT 150 (162)
T PF01233_consen 90 LVGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVN-LQGIWQAVYT 150 (162)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHH-TTT--EEEEE
T ss_pred EEEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhh-hcCceeeeee
Confidence 367776665541 12257899999999999999999999999999998 444 344443
No 92
>KOG4601 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=0.06 Score=32.36 Aligned_cols=68 Identities=12% Similarity=0.161 Sum_probs=45.2
Q ss_pred ccceEEEeecCCC----cCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhc
Q 034552 2 VGDVNIYMNDLDN----LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 73 (91)
Q Consensus 2 VG~~~~~~~~~~~----~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~ 73 (91)
||+=.++..|.+. ....-|-.|+|+++.|++|.|.++++.+++ +.+...-.+.++.-.....+|.++.
T Consensus 89 VG~KkLfl~D~~~~~ye~e~lcILDFyVheS~QR~G~G~~lfdyMl~----kE~vephQ~a~DrPS~kLl~Fm~kh 160 (264)
T KOG4601|consen 89 VGYKKLFLTDNEQNQYEEEALCILDFYVHESEQRSGNGFKLFDYMLK----KENVEPHQCAFDRPSAKLLQFMEKH 160 (264)
T ss_pred ccceeEEEeccHhhhhccCCceEEEEEeehhhhhcCchHHHHHHHHH----hcCCCchheeccChHHHHHHHHHHh
Confidence 5555666665322 234556777778999999999999988866 4455555666665555666666543
No 93
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=95.64 E-value=0.085 Score=28.35 Aligned_cols=43 Identities=12% Similarity=0.004 Sum_probs=37.3
Q ss_pred CceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEe
Q 034552 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKI 59 (91)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~ 59 (91)
+.........+|+++.-+.+..++..+++++. +.|++.+-+..
T Consensus 93 ~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~-~~g~~~~d~g~ 135 (142)
T PF13480_consen 93 GTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAI-ERGLRYFDFGG 135 (142)
T ss_pred CEEEEEEEEECHhhHhCCHHHHHHHHHHHHHH-HCCCCEEEECC
Confidence 56777778889999999999999999999999 78998777654
No 94
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.58 E-value=0.24 Score=29.38 Aligned_cols=64 Identities=16% Similarity=0.180 Sum_probs=49.1
Q ss_pred CCcCceeeEEeeeCc--cccCc---c-hHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 13 DNLELAEVEIMIAEP--KSRGK---G-LAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 13 ~~~~~~~i~~~~v~~--~~r~~---G-~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
..+...|.+.|++++ .-+.. . ++.+++..+++++. ..|++.|.+.+ ...+.+++.+.||.....
T Consensus 94 ~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a~-~~G~~~IvtVt---~~~meril~r~Gw~~~ri 163 (209)
T COG3916 94 SSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMIEYAL-ARGITGIVTVT---DTGMERILRRAGWPLTRI 163 (209)
T ss_pred CCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHHHHHH-HcCCceEEEEE---chHHHHHHHHcCCCeEEc
Confidence 345789999998874 22222 2 36789999999999 89999998776 457999999999986643
No 95
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=95.54 E-value=0.032 Score=35.62 Aligned_cols=51 Identities=22% Similarity=0.183 Sum_probs=35.7
Q ss_pred ccceEEEeecC-CCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCc
Q 034552 2 VGDVNIYMNDL-DNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGI 52 (91)
Q Consensus 2 VG~~~~~~~~~-~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~ 52 (91)
+|+..++.... .+.-...|+.+.+.|.||++|+|+.+++.+......+..+
T Consensus 201 ~gy~tiyk~y~yid~~R~RiSQmlilpPfq~~Glgs~l~E~i~r~~~~~p~v 252 (403)
T KOG2696|consen 201 VGYYTIYKFYEYIDRIRPRISQMLILPPFQGKGLGSQLYEAIARDYLEEPTV 252 (403)
T ss_pred eeeEEEeehhhhhhhhhhhhheeEEeccccCCchHHHHHHHHHHhhccCCce
Confidence 34455544431 1125678889999999999999999999999765534433
No 96
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=95.54 E-value=0.012 Score=37.79 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=30.6
Q ss_pred cceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHH
Q 034552 3 GDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYA 46 (91)
Q Consensus 3 G~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~ 46 (91)
|+++++.........-.+..+++.|.||++|+|+.||+.-=..-
T Consensus 246 G~VGYFSKEK~s~~~yNlaCILtLPpyQRkGYGklLIdFSYeLS 289 (396)
T KOG2747|consen 246 GCVGYFSKEKESSENYNLACILTLPPYQRKGYGKLLIDFSYELS 289 (396)
T ss_pred ceeeeeccccccccccceeeeeecChhhhcccchhhhhhhhhhh
Confidence 44455544433333445888999999999999999998754444
No 97
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=95.31 E-value=0.056 Score=32.92 Aligned_cols=48 Identities=19% Similarity=0.154 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechhhhh
Q 034552 33 GLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIF 84 (91)
Q Consensus 33 G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~~~ 84 (91)
+-...++..+.+.|. +.|+.+|.+.+...+ ...|++.||...+..+.|
T Consensus 21 ~~~~~~~~~~~~~a~-~~~~~ki~~~~~~~~---~~~~~~~g~~~e~~i~~~ 68 (266)
T TIGR03827 21 NDVEALIPDLDALAK-KEGYTKIIAKVPGSD---KPLFEERGYLEEAKIPGY 68 (266)
T ss_pred ccHHHHHHHHHHHHH-HcCCcEEEEEccHHH---HHHHHHCCCeEEEecccc
Confidence 347789999999998 899999999997764 789999999999988765
No 98
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.96 E-value=0.032 Score=38.69 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=27.9
Q ss_pred ceeeEEeeeCccccCcchHHHHHHHHHHHHH
Q 034552 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 47 (91)
Q Consensus 17 ~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~ 47 (91)
-+.|=.++|+|+|++.|||++.++.+.+|..
T Consensus 614 GaRIVRIAvhP~y~~MGYGsrAvqLL~~y~e 644 (1011)
T KOG2036|consen 614 GARIVRIAVHPEYQKMGYGSRAVQLLTDYFE 644 (1011)
T ss_pred CceEEEEEeccchhccCccHHHHHHHHHHHh
Confidence 4678889999999999999999999999865
No 99
>PHA01733 hypothetical protein
Probab=94.96 E-value=0.032 Score=31.38 Aligned_cols=48 Identities=15% Similarity=0.222 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechhh
Q 034552 35 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (91)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (91)
-..+++....++.+...++.++-.|.+.|..++++...+||+.....+
T Consensus 87 ~~~f~re~r~~l~e~~~Yp~LwNyV~~~N~~hir~Lk~lGF~f~~~~~ 134 (153)
T PHA01733 87 PIALLRGAKWWLPKSRNYDLLWNIVDKRNLVHRKLLRKLGFKGLRYVQ 134 (153)
T ss_pred CHHHHHHHHHHHHHhccccHHHHhHhcccHHHHHHHHHcCceeecccc
Confidence 344444444444334567888889999999999999999999876543
No 100
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=94.94 E-value=0.082 Score=32.75 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=26.1
Q ss_pred eeeEEeeeCccccCcchHHHHHHHHHHHHH
Q 034552 18 AEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 47 (91)
Q Consensus 18 ~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~ 47 (91)
-.+..+++.|.||++|+|+.|++..=...+
T Consensus 156 nNLaCIltLPpyQrkGyG~~LI~fSYeLSr 185 (290)
T PLN03238 156 YNLACILTLPPYQRKGYGKFLISFAYELSK 185 (290)
T ss_pred CcEEEEEecChhhhccHhHhHHHHHhHHhh
Confidence 458889999999999999999998777665
No 101
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=94.79 E-value=0.18 Score=25.69 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=25.5
Q ss_pred CccEEEEEecCCcHHHHHHHHhcCceeec
Q 034552 51 GIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (91)
Q Consensus 51 ~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (91)
....++-.|...|...++|.+.+|++...
T Consensus 55 ~Y~~l~N~V~~~N~~HIRfLk~lGA~f~~ 83 (86)
T PF11090_consen 55 QYPVLWNFVWVGNKSHIRFLKSLGAVFHN 83 (86)
T ss_pred HhhheeEEEEeCCHHHHHHHHhcCcEEcc
Confidence 36778999999999999999999998654
No 102
>PLN03239 histone acetyltransferase; Provisional
Probab=94.55 E-value=0.09 Score=33.44 Aligned_cols=30 Identities=10% Similarity=0.196 Sum_probs=26.0
Q ss_pred eeeEEeeeCccccCcchHHHHHHHHHHHHH
Q 034552 18 AEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 47 (91)
Q Consensus 18 ~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~ 47 (91)
--+..+++.|.||++|+|+.|++..=...+
T Consensus 214 ~NLaCIltLPpyQrkGyG~lLI~fSYeLSr 243 (351)
T PLN03239 214 YNLACILTFPAHQRKGYGRFLIAFSYELSK 243 (351)
T ss_pred CceEEEEecChhhhcchhhhhHhhhhHhhh
Confidence 468999999999999999999998766665
No 103
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=93.92 E-value=0.23 Score=28.68 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=42.5
Q ss_pred ceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcC
Q 034552 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLG 74 (91)
Q Consensus 17 ~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~G 74 (91)
.+|++.+.|.|+.+|.|++..+ ..+.-.++ +.++.--..++ ..+.++.+++++
T Consensus 85 VaElGLygVRpDLEGlGi~hs~-r~m~PvLq-~LgVPF~FGtV---R~al~~Hv~R~~ 137 (196)
T PF02474_consen 85 VAELGLYGVRPDLEGLGISHSM-RVMYPVLQ-ELGVPFGFGTV---RHALRNHVERLC 137 (196)
T ss_pred EEEEEEEEeeccccccccchhh-hhhhhHHH-hcCCCeecccc---hHHHHHHHHHHh
Confidence 6899999999999999999865 56666666 88888776666 457888888876
No 104
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=93.65 E-value=0.32 Score=26.66 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=43.9
Q ss_pred ceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeec
Q 034552 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (91)
Q Consensus 17 ~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (91)
..-+-.+. ||++....+|+..+-..+++|+ +.|.+.+++.--..+ ..++--|..|++..
T Consensus 63 lSaVY~fy-DPd~~~~SlG~~~iL~eI~~a~-~~~l~y~YLGY~I~~--c~kM~YK~~f~P~e 121 (128)
T PF04377_consen 63 LSAVYTFY-DPDYSKRSLGTYSILREIELAR-ELGLPYYYLGYWIHG--CPKMNYKARFRPHE 121 (128)
T ss_pred hhheeeee-CCCccccCcHHHHHHHHHHHHH-HcCCCEEeeCeEeCC--CCcccchhcCCcee
Confidence 34455555 7999999999999999999999 899999998744443 33455566666654
No 105
>PTZ00064 histone acetyltransferase; Provisional
Probab=93.64 E-value=0.13 Score=34.27 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=25.8
Q ss_pred eeeEEeeeCccccCcchHHHHHHHHHHHHH
Q 034552 18 AEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 47 (91)
Q Consensus 18 ~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~ 47 (91)
--+..+++.|.||++|||+.||+..=...+
T Consensus 385 nNLACILtLPpyQRKGYGklLIdfSYeLSr 414 (552)
T PTZ00064 385 YNLACILTLPCYQRKGYGKLLVDLSYKLSL 414 (552)
T ss_pred CceEEEEecchhhhcchhhhhhhhhhhhhh
Confidence 468899999999999999999988766655
No 106
>PHA00432 internal virion protein A
Probab=93.47 E-value=0.24 Score=27.50 Aligned_cols=30 Identities=10% Similarity=0.060 Sum_probs=27.4
Q ss_pred CccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 51 GIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 51 ~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
..+.+.-.|.+.|..+++|.+.+||+....
T Consensus 92 ~yp~LwNyV~~~N~~hir~Lk~lGf~f~~e 121 (137)
T PHA00432 92 QYPSLWNYVWVGNKSHIRFLKSIGAVFHNE 121 (137)
T ss_pred hhhhhheeeecCCHHHHHHHHHcCeeeecc
Confidence 478899999999999999999999998765
No 107
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=93.46 E-value=0.075 Score=34.91 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=25.4
Q ss_pred eeeEEeeeCccccCcchHHHHHHHHHHHHH
Q 034552 18 AEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 47 (91)
Q Consensus 18 ~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~ 47 (91)
-.+..+++.|.||++|+|+.||+..=...+
T Consensus 307 ~NLaCIltlP~yQrkGyG~~LI~~SYeLSr 336 (450)
T PLN00104 307 YNLACILTLPPYQRKGYGKFLIAFSYELSK 336 (450)
T ss_pred CceEEEEecchhhhcchhheehhheehhhh
Confidence 468999999999999999999987655554
No 108
>PRK14852 hypothetical protein; Provisional
Probab=92.87 E-value=0.37 Score=34.82 Aligned_cols=69 Identities=10% Similarity=0.149 Sum_probs=55.3
Q ss_pred cCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHH-hcCceeechhhhhhhh
Q 034552 15 LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQ-KLGFEDISYSEIFKEA 87 (91)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~-~~Gf~~~~~~~~~~~~ 87 (91)
...++++.++++|+.|.+-+--.+++.+..++. ..+++-+.+.|++. =..||+ =+||+..+....|+.+
T Consensus 119 r~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~-~~~~dd~~i~VnPk---H~~FY~r~l~f~~ig~~r~~p~V 188 (989)
T PRK14852 119 RNVVEVGALATQYSRRWTNLMVFLAKAMFQYSM-MSEVDDILVTVNPK---HVKFYTDIFLFKPFGEVRHYDTV 188 (989)
T ss_pred CeEEeeehheechhhcccchhHHHHHHHHHHHH-HcCCCeEEEEECcc---hHHHHHHHhCCccccccccCCCC
Confidence 368999999999888887777788888888877 67888888888655 466998 6899999987776554
No 109
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=92.59 E-value=0.51 Score=29.63 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=48.5
Q ss_pred EeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechh
Q 034552 22 IMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (91)
Q Consensus 22 ~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~ 81 (91)
+...++++++.+.+..++-.+++++. +.|++..-......|....+|=++.||+++...
T Consensus 224 ~~g~~~~~~~~~~~~lL~w~~i~~a~-~~G~~~fDfG~s~~~~G~~~FK~~~G~~~~~l~ 282 (330)
T TIGR03019 224 YAGGLREARDVAANDLMYWELMRRAC-ERGLRVFDFGRSKRGTGPFKFKKNWGFEPQPLH 282 (330)
T ss_pred eccChHHHHhhChHHHHHHHHHHHHH-HCCCcEEEcCCCCCCCccHHHHhcCCCeeccce
Confidence 44556889988899999999999999 889999888776666677788889999987643
No 110
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=92.46 E-value=0.57 Score=26.95 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=39.9
Q ss_pred CCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhc
Q 034552 13 DNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 73 (91)
Q Consensus 13 ~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~ 73 (91)
..+..+++.-+++.|..+|.|++.-+.+.+.+.- +.+.+.+.++|+.-.-++++.
T Consensus 84 ~~~~v~yLdKFav~~~~~g~gv~D~vf~~i~~d~------p~L~Wrsr~~n~~~~Wyf~rs 138 (170)
T PF04768_consen 84 SNGPVPYLDKFAVSKSAQGSGVADNVFNAIRKDF------PKLFWRSREDNPNNKWYFERS 138 (170)
T ss_dssp TCTSEEEEEEEEE-HHHHHTTHHHHHHHHHHHH-------SSEEEEEETT-TTHHHHHHH-
T ss_pred CCCCCeEEEEEEecchhhhcCHHHHHHHHHHHhc------cceEEEecCCCCcccEEEEee
Confidence 3446899999999999999999999999985432 237888888886655555554
No 111
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=92.28 E-value=0.34 Score=30.95 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=26.4
Q ss_pred cCceeeEEeeeCccccCcchHHHHHHHHHHHHH
Q 034552 15 LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 47 (91)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~ 47 (91)
....|+..+.++|+||+.|.|+.|-+.-.-++.
T Consensus 119 tG~sEl~tLfL~p~~R~~~~G~lLSr~RfLFiA 151 (342)
T PF04958_consen 119 TGCSELCTLFLDPDYRGGGNGRLLSRSRFLFIA 151 (342)
T ss_dssp TTSEEEEEEEE-GGGTTSHHHHHHHHHHHHHHH
T ss_pred CCCeeeEEEEECHHHcCCchHHHHHHHHHHHHH
Confidence 367899999999999999999988777555554
No 112
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=92.15 E-value=0.36 Score=33.05 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=49.3
Q ss_pred ccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechhhhh
Q 034552 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIF 84 (91)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~~~ 84 (91)
.+....+..++++..++.-++ ..|.....+.+..++.+-++||.++||..++....+
T Consensus 826 ~~a~D~~~~k~m~~vll~tL~-aNGsrGaf~~V~~dD~~~~~fys~lG~~d~~~~e~~ 882 (891)
T KOG3698|consen 826 MDASDAHPMKKMIQVLLVTLA-ANGSRGAFLTVAIDDIERQKFYSELGLTDLGLSECQ 882 (891)
T ss_pred cccccchHHHHHHHHHHHHHH-hcCCcceeEEechhHHHHHHHHHHhchHHHhHhhcc
Confidence 345567899999999999888 789999999999999999999999999987765543
No 113
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=91.57 E-value=1.2 Score=27.16 Aligned_cols=61 Identities=18% Similarity=0.212 Sum_probs=45.4
Q ss_pred CceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
...-+-.+. ||++...++|+..+-.-+++++ +.|.+.+++.---.+ ..++--|..|++...
T Consensus 167 ~lSAVY~Fy-DPd~~~~SLG~~~iL~qI~~ak-~~gl~y~YLGY~I~~--c~kM~YK~~f~P~E~ 227 (240)
T PRK01305 167 GLSAVYTFY-DPDEEHRSLGTFAILWQIELAK-RLGLPYVYLGYWIKG--SRKMNYKARFRPLEI 227 (240)
T ss_pred ceeeEEEee-CCCccccCCHHHHHHHHHHHHH-HcCCCeEeeeEEECC--CCcccccccCCccee
Confidence 344555555 7999999999999999999999 899999998854443 334556666776654
No 114
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=91.26 E-value=0.57 Score=29.86 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=25.2
Q ss_pred cCceeeEEeeeCccccCcchHHHHHHHHHHHH
Q 034552 15 LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYA 46 (91)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~ 46 (91)
....+|..+.++|+||+.|.|+.|-+.=.-++
T Consensus 115 tG~sElctLfL~p~~R~~~~G~LLSr~RfLFi 146 (335)
T TIGR03243 115 TGSSELCTLFLDPDYRKGGNGRLLSRSRFLFI 146 (335)
T ss_pred CCCeeeEEEEECHHHcCCCchhhHHHHHHHHH
Confidence 35789999999999999999987766544433
No 115
>PHA02769 hypothetical protein; Provisional
Probab=91.02 E-value=0.42 Score=25.80 Aligned_cols=46 Identities=20% Similarity=0.189 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHH--hhcCccEEEEEecCCcHHHHHHHHhcCceeechhh
Q 034552 35 AKDAVLMMMAYAV--ENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (91)
Q Consensus 35 g~~l~~~~~~~~~--~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (91)
|..+++.+...+. ++.|...++..-.++ .|..+|.+.||+.++...
T Consensus 94 gd~lvnfl~~l~~k~~~dg~evlwtlgfpd--hsnaly~kagfk~vg~ts 141 (154)
T PHA02769 94 GDHLVNFLNDLAEKLKKDGFEVLWTLGFPD--HSNALYKKAGFKLVGQTS 141 (154)
T ss_pred hHHHHHHHHHHHHHHhcCCeEEEEEecCCC--cchhHHhhhhhhHhcccc
Confidence 4445555444332 256787776655554 578899999999998653
No 116
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=91.00 E-value=0.63 Score=29.68 Aligned_cols=31 Identities=10% Similarity=0.048 Sum_probs=24.6
Q ss_pred cCceeeEEeeeCccccCcchHHHHHHHHHHH
Q 034552 15 LELAEVEIMIAEPKSRGKGLAKDAVLMMMAY 45 (91)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~ 45 (91)
....+|..+.++|+||+.|.|+.|-+.=.-+
T Consensus 116 tG~sElctLfL~p~~R~~~~G~lLSr~RfLF 146 (336)
T TIGR03245 116 TGSSLLCSFYVDPRLRKTEAAELLSRARLLF 146 (336)
T ss_pred CCCeeeEEEEECHHHcCCCchhHHHHHHHHH
Confidence 3578999999999999999988776654433
No 117
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=90.53 E-value=0.19 Score=26.08 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=19.7
Q ss_pred CceeeEEeeeCccccCcchHHHH
Q 034552 16 ELAEVEIMIAEPKSRGKGLAKDA 38 (91)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l 38 (91)
+.+|++.++|+|+||++.....|
T Consensus 77 ~~~EisRl~V~~~~R~~~~~~~L 99 (101)
T PF13444_consen 77 RVAEISRLCVHPEYRRRKVLLLL 99 (101)
T ss_pred cEEEeehheECHhHCCChHHHHH
Confidence 78999999999999988766554
No 118
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=90.52 E-value=0.67 Score=29.56 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=24.5
Q ss_pred cCceeeEEeeeCccccCcchHHHHHHHHHHH
Q 034552 15 LELAEVEIMIAEPKSRGKGLAKDAVLMMMAY 45 (91)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~ 45 (91)
....+|..+.++|+||+.|.|+.|-+.=.-+
T Consensus 115 tG~SElctLfL~p~~R~~~~G~LLSr~RfLF 145 (336)
T TIGR03244 115 TGYSELCTLFLDPDYRKGGNGRLLSKSRFLF 145 (336)
T ss_pred CCCeeeEEEEECHHHcCCcchhhHHHHHHHH
Confidence 3578999999999999999988776654333
No 119
>PRK10456 arginine succinyltransferase; Provisional
Probab=90.48 E-value=0.67 Score=29.66 Aligned_cols=31 Identities=13% Similarity=0.112 Sum_probs=24.5
Q ss_pred cCceeeEEeeeCccccCcchHHHHHHHHHHH
Q 034552 15 LELAEVEIMIAEPKSRGKGLAKDAVLMMMAY 45 (91)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~ 45 (91)
....+|..+.++|+||+.|.|+.|-+.=.-+
T Consensus 117 tG~sElctLfl~p~~R~~~~G~LLSr~RfLF 147 (344)
T PRK10456 117 TGSSELCTLFLDPDWRKEGNGYLLSKSRFMF 147 (344)
T ss_pred CCCceeEEEEECHHHcCCCchhHHHHHHHHH
Confidence 3577999999999999999988776654333
No 120
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.91 E-value=1.4 Score=27.02 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=45.2
Q ss_pred ceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechh
Q 034552 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (91)
Q Consensus 17 ~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~ 81 (91)
..-+..+. ||++...++|+..+-.-+.+++ +.|.+.+++.--..+ +.++--|.-|++....
T Consensus 175 lSsVY~Fy-dPd~s~~SLGt~~iL~~I~~aq-~~~l~yvYLGYwI~~--c~KM~YKa~f~P~e~L 235 (253)
T COG2935 175 LSSVYTFY-DPDMSKRSLGTLSILDQIAIAQ-RLGLPYVYLGYWIKG--CPKMNYKARFSPLELL 235 (253)
T ss_pred ceeEEEEe-CCChhhhcchHHHHHHHHHHHH-HhCCCeEEEEEEECC--ccccCcccccChHHhh
Confidence 44455555 7999999999999999999998 899999999855443 4455566666665543
No 121
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=89.46 E-value=1.4 Score=23.51 Aligned_cols=52 Identities=17% Similarity=0.226 Sum_probs=38.9
Q ss_pred cCceeeEEeeeCccccC-cchHHHHHHHHHHHHHhhcCcc-EEEEEecCCcHHHHHHHHh
Q 034552 15 LELAEVEIMIAEPKSRG-KGLAKDAVLMMMAYAVENFGIH-VFRAKIGESNGASLRLFQK 72 (91)
Q Consensus 15 ~~~~~i~~~~v~~~~r~-~G~g~~l~~~~~~~~~~~~~~~-~v~~~~~~~n~~~~~~~~~ 72 (91)
...+.+..+++.+.-|| .|++.-+.+.+.+. .+ .+.+...++|+.-.-++++
T Consensus 37 ~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~~------fp~~L~Wrsr~~n~~n~Wyfer 90 (108)
T cd04266 37 EKIAYLDKFAVLPKAQGSDGIADILFNAMLDG------FPNELIWRSRKDNPVNKWYFER 90 (108)
T ss_pred CCceEEEEEEEccccccccchHHHHHHHHHHc------CCCceEEEeCCCCcccceEEee
Confidence 46789999999999997 89999999988652 23 3777788777654444443
No 122
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=89.11 E-value=0.13 Score=32.84 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=22.0
Q ss_pred CceeeEEeeeCccccCcchHHHHHHH
Q 034552 16 ELAEVEIMIAEPKSRGKGLAKDAVLM 41 (91)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~ 41 (91)
..-.+..+.+.|.||++|+|..|++.
T Consensus 261 ~~yNLaCILtLP~yQRrGYG~lLIdF 286 (395)
T COG5027 261 QDYNLACILTLPPYQRRGYGKLLIDF 286 (395)
T ss_pred ccCceEEEEecChhHhcccceEeeee
Confidence 44568888999999999999988875
No 123
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=88.62 E-value=3.3 Score=24.12 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=46.6
Q ss_pred cCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeec
Q 034552 15 LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (91)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (91)
...+|++.++.. +.|.+..++..+...+. ..|++.+..+. ....++++.|+|..+..
T Consensus 85 ~~IvEvGnLAs~----~~g~~~~l~~~l~~~L~-~~g~~w~vfTa---T~~lr~~~~rlgl~~~~ 141 (179)
T PF12261_consen 85 SQIVEVGNLASF----SPGAARLLFAALAQLLA-QQGFEWVVFTA---TRQLRNLFRRLGLPPTV 141 (179)
T ss_pred hheeEeechhhc----CcccHHHHHHHHHHHHH-HCCCCEEEEeC---CHHHHHHHHHcCCCcee
Confidence 367888888763 48899999999999988 88999886654 55799999999998764
No 124
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=87.85 E-value=3.5 Score=24.04 Aligned_cols=62 Identities=18% Similarity=0.293 Sum_probs=47.4
Q ss_pred eEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCc---HHHHHHHHhcCceeechh
Q 034552 20 VEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESN---GASLRLFQKLGFEDISYS 81 (91)
Q Consensus 20 i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n---~~~~~~~~~~Gf~~~~~~ 81 (91)
.+.++.-|+=.--+..++-+-+++++|.++..+.+|.+...+.+ .+..+-+.-.||+++...
T Consensus 102 ~~l~~~IPdq~l~~gsKe~lvalLEfAEekl~~d~Vfi~F~K~R~dr~~LlrtfsyvGFEpvrp~ 166 (191)
T KOG4387|consen 102 ESLFFEIPDQALDVGSKEGLVALLEFAEEKLHVDKVFICFDKNREDRAALLRTFSYVGFEPVRPD 166 (191)
T ss_pred ccEEEecCcchhcccchHhHHHHHHHHHHhhccceEEEEEecCccChHhhhhhehcceeeecCCC
Confidence 34444446666667788999999999998899999999888776 445566677899988654
No 125
>PRK00756 acyltransferase NodA; Provisional
Probab=86.75 E-value=3.1 Score=24.13 Aligned_cols=53 Identities=19% Similarity=0.247 Sum_probs=38.5
Q ss_pred CceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhc
Q 034552 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 73 (91)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~ 73 (91)
-.++++.+.|.|+..|.|++..+ ..+.--++ +.++.--..++ ..++++-.+++
T Consensus 84 LVaElGLygVRpDLEGlGi~~S~-r~m~PvLq-~LgVPF~FGtV---R~al~~Hv~R~ 136 (196)
T PRK00756 84 LVAELGLYGVRPDLEGLGIAHSI-RAMYPVLQ-ELGVPFAFGTV---RHALRNHVERL 136 (196)
T ss_pred eEEEeeeeeeccccccccchhhH-HHHHHHHH-hcCCCeecccc---hHHHHHHHHHH
Confidence 36899999999999999998765 55555555 78888665555 34566666655
No 126
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=83.51 E-value=1.8 Score=22.60 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=16.7
Q ss_pred EEEEecCCcHHHHHHHHhcCceeec
Q 034552 55 FRAKIGESNGASLRLFQKLGFEDIS 79 (91)
Q Consensus 55 v~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (91)
+.+.| .+=.+|++||+++||+...
T Consensus 4 i~l~V-~D~~~a~~FY~~LGf~~~~ 27 (122)
T cd07235 4 VGIVV-ADMAKSLDFYRRLGFDFPE 27 (122)
T ss_pred EEEEe-ccHHHHHHHHHHhCceecC
Confidence 33434 3346899999999998754
No 127
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=82.27 E-value=1.1 Score=23.46 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=16.6
Q ss_pred CcHHHHHHHHhcCceeechhh
Q 034552 62 SNGASLRLFQKLGFEDISYSE 82 (91)
Q Consensus 62 ~n~~~~~~~~~~Gf~~~~~~~ 82 (91)
+=.++++||+.+||+.....+
T Consensus 11 Dl~~s~~FY~~LGf~~~~~~~ 31 (113)
T cd08356 11 DFAESKQFYQALGFELEWEND 31 (113)
T ss_pred cHHHHHHHHHHhCCeeEecCC
Confidence 346899999999999876543
No 128
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=80.15 E-value=2.7 Score=22.64 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=19.3
Q ss_pred ccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 52 IHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 52 ~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+..+...|. +-..+++||.++||+....
T Consensus 4 i~Hi~i~v~-Dl~~s~~FY~~LG~~~~~~ 31 (142)
T cd08353 4 MDNVGIVVR-DLEAAIAFFLELGLELEGR 31 (142)
T ss_pred eeeEEEEeC-CHHHHHHHHHHcCCEEccc
Confidence 344544444 4568899999999987654
No 129
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=79.81 E-value=7.8 Score=23.02 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=37.6
Q ss_pred cchHHHHHHHHHHHHHhh-cCccEEEEEecCCcHHHHHHHHhcCceeechh
Q 034552 32 KGLAKDAVLMMMAYAVEN-FGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (91)
Q Consensus 32 ~G~g~~l~~~~~~~~~~~-~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~ 81 (91)
-|.|-.++..+++..... .+...+.+.........+++....||...++.
T Consensus 73 AGMGG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 73 AGMGGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp EEE-HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEEE
T ss_pred ecCCHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEeE
Confidence 378888898888877633 25678889899888999999999999988764
No 130
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=79.00 E-value=14 Score=23.51 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=52.8
Q ss_pred ccceEEEeecC---CCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHh---h-----cCcc-EEEEEecCCcHHHHHH
Q 034552 2 VGDVNIYMNDL---DNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVE---N-----FGIH-VFRAKIGESNGASLRL 69 (91)
Q Consensus 2 VG~~~~~~~~~---~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~---~-----~~~~-~v~~~~~~~n~~~~~~ 69 (91)
|..+++.+... ++.-...|..+.+..=|..-|+-..|++.++-..++ + .+.+ .+.+.+..-+....++
T Consensus 181 IAiisl~~~~~~St~~~~vv~ItgigvRkVy~Ksgi~e~LidWA~~Rtr~l~~ey~k~k~~~si~ll~d~YSFD~~~~k~ 260 (304)
T PF11124_consen 181 IAIISLVPNKDQSTKENFVVKITGIGVRKVYVKSGIDEDLIDWAMLRTRQLYKEYLKGKKGCSIKLLVDVYSFDKDMKKT 260 (304)
T ss_pred eEEEEeccccccCCCceEEEEEeeeEEEEEEeecChHHHHHHHHHHHHHHHHHHhccccccceEEEEEEeeeccHHHHHH
Confidence 44555554431 222456777788878889999999999988554441 1 1212 2444567778999999
Q ss_pred HHhcCceeec
Q 034552 70 FQKLGFEDIS 79 (91)
Q Consensus 70 ~~~~Gf~~~~ 79 (91)
+++.||+.+.
T Consensus 261 L~~~gF~~i~ 270 (304)
T PF11124_consen 261 LKKKGFKKIS 270 (304)
T ss_pred HHHCCCeeee
Confidence 9999999987
No 131
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=78.59 E-value=2.1 Score=22.53 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=14.9
Q ss_pred CcHHHHHHHHhcCceeec
Q 034552 62 SNGASLRLFQKLGFEDIS 79 (91)
Q Consensus 62 ~n~~~~~~~~~~Gf~~~~ 79 (91)
+=.+|.+||+.+||+...
T Consensus 10 Dl~~s~~FY~~lGf~~~~ 27 (124)
T cd09012 10 DLEKSTAFYTALGFEFNP 27 (124)
T ss_pred CHHHHHHHHHHCCCEEcc
Confidence 347899999999999764
No 132
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=77.02 E-value=3.3 Score=26.88 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=29.8
Q ss_pred CceeeEEeeeCccccCcchHHHHHHHHHHHHH
Q 034552 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 47 (91)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~ 47 (91)
+.++|.++.||++.|+++++--||+++...+.
T Consensus 166 k~veINFLCVHKkLRSKRlaPvLIrEITRRvn 197 (421)
T KOG2779|consen 166 KMVEINFLCVHKKLRSKRLAPVLIREITRRVN 197 (421)
T ss_pred eeeeEEEEEEehhhhccccccHHHHHHHHHhh
Confidence 57899999999999999999999999998876
No 133
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=77.00 E-value=2.6 Score=22.01 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=16.5
Q ss_pred CcHHHHHHHHhcCceeechhh
Q 034552 62 SNGASLRLFQKLGFEDISYSE 82 (91)
Q Consensus 62 ~n~~~~~~~~~~Gf~~~~~~~ 82 (91)
+=..|++||.++||+.....+
T Consensus 12 Dl~~s~~FY~~lG~~~~~~~~ 32 (120)
T cd08350 12 DLDATEAFYARLGFSVGYRQA 32 (120)
T ss_pred CHHHHHHHHHHcCCEEEecCC
Confidence 447899999999999876543
No 134
>KOG3014 consensus Protein involved in establishing cohesion between sister chromatids during DNA replication [Replication, recombination and repair]
Probab=75.22 E-value=14 Score=22.87 Aligned_cols=32 Identities=13% Similarity=0.081 Sum_probs=27.4
Q ss_pred cCceeeEEeeeCccccCcchHHHHHHHHHHHH
Q 034552 15 LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYA 46 (91)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~ 46 (91)
+-.+.|+.+.|.+.-|++|+++.++..+...-
T Consensus 181 ~~~~GIsRIWV~s~~Rr~gIAs~lldva~~~~ 212 (257)
T KOG3014|consen 181 PAICGISRIWVSSLRRRKGIASLLLDVARCNF 212 (257)
T ss_pred CcEeeeEEEEeehhhhhhhhHHHHHHHHHHhh
Confidence 45678999999999999999999999887743
No 135
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=74.64 E-value=11 Score=20.06 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHhhcCccEEEEEecCCcHH---HHHHHHhcCceeechh
Q 034552 34 LAKDAVLMMMAYAVENFGIHVFRAKIGESNGA---SLRLFQKLGFEDISYS 81 (91)
Q Consensus 34 ~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~---~~~~~~~~Gf~~~~~~ 81 (91)
-.++.+-+++++|..+.++..+.+....+... ..+-+.-+||+.+...
T Consensus 38 ~~K~~lvaLLElAee~L~c~~vvic~~k~~~d~~~Llr~l~~vGF~lv~~~ 88 (108)
T PF02100_consen 38 GSKESLVALLELAEEKLGCSHVVICLDKNRPDRASLLRTLMWVGFELVTPG 88 (108)
T ss_dssp --SHHHHHHHHHHHHHH----EEEEE---SS-HHHHHHHHTTT--EEE---
T ss_pred ccHHHHHHHHHHhcCcCCCCEEEEEEECCchhHHHhhhhcEeeccEecCCC
Confidence 35678888889997678999999988777644 4555567888887643
No 136
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=72.82 E-value=12 Score=24.68 Aligned_cols=41 Identities=7% Similarity=0.134 Sum_probs=30.9
Q ss_pred eEEEeecCCCcCceeeEEeeeCccccC-cchHHHHHHHHHHH
Q 034552 5 VNIYMNDLDNLELAEVEIMIAEPKSRG-KGLAKDAVLMMMAY 45 (91)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~v~~~~r~-~G~g~~l~~~~~~~ 45 (91)
+.+......+.+..+++-++|.++.+| -|++..+.+-+.+.
T Consensus 388 aIlTyegs~~~~vpYLDKfAVl~~aQGs~gisd~vfniM~e~ 429 (495)
T COG5630 388 AILTYEGSGENNVPYLDKFAVLDDAQGSEGISDAVFNIMREE 429 (495)
T ss_pred EEEEeeccCCCCCcceeeeeccccccccchHHHHHHHHHHHh
Confidence 344444344558899999999999999 79999888776553
No 137
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=70.37 E-value=14 Score=22.35 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=25.5
Q ss_pred hcCccEEEEE---ecCCcHHHHHHHHhcCceeech
Q 034552 49 NFGIHVFRAK---IGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 49 ~~~~~~v~~~---~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
..+.+++..- +.+-|+....|+++.||..++.
T Consensus 115 al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~ 149 (238)
T COG3473 115 ALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDF 149 (238)
T ss_pred hhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEe
Confidence 5566666654 5677999999999999998864
No 138
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=70.01 E-value=3.6 Score=22.64 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=14.2
Q ss_pred cHHHHHHHHhcCceeec
Q 034552 63 NGASLRLFQKLGFEDIS 79 (91)
Q Consensus 63 n~~~~~~~~~~Gf~~~~ 79 (91)
=.++.+||..+||+.-.
T Consensus 14 L~~S~~Fy~alGfk~Np 30 (133)
T COG3607 14 LEASKAFYTALGFKFNP 30 (133)
T ss_pred HHHHHHHHHHhCcccCC
Confidence 36889999999999654
No 139
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=69.82 E-value=11 Score=22.63 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=31.6
Q ss_pred cchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeec
Q 034552 32 KGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (91)
Q Consensus 32 ~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (91)
+|+|.+-...++-|+.+ .. +..-+.-+++++.|+|+....
T Consensus 121 KGIG~ETaDsILlYa~~-rp-------~FVvD~Yt~R~l~rlg~i~~k 160 (215)
T COG2231 121 KGIGKETADSILLYALD-RP-------VFVVDKYTRRLLSRLGGIEEK 160 (215)
T ss_pred CCcchhhHHHHHHHHhc-Cc-------ccchhHHHHHHHHHhcccccc
Confidence 69999999999999983 22 222366789999999998874
No 140
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=68.73 E-value=16 Score=19.48 Aligned_cols=45 Identities=16% Similarity=0.205 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 35 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
.....-.+++.+. ..|++.+++.....+..+.+..++.|.+.++.
T Consensus 64 ~~~~~~~~v~~~~-~~g~~~v~~~~g~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 64 PPDKVPEIVDEAA-ALGVKAVWLQPGAESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp -HHHHHHHHHHHH-HHT-SEEEE-TTS--HHHHHHHHHTT-EEEES
T ss_pred CHHHHHHHHHHHH-HcCCCEEEEEcchHHHHHHHHHHHcCCEEEeC
Confidence 3445666777776 67999999999999999999999999998864
No 141
>PRK13913 3-methyladenine DNA glycosylase; Provisional
Probab=68.68 E-value=13 Score=22.43 Aligned_cols=40 Identities=25% Similarity=0.362 Sum_probs=29.6
Q ss_pred CcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceee
Q 034552 31 GKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDI 78 (91)
Q Consensus 31 ~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~ 78 (91)
=.|+|.+....++-+++ .. +.+. -+....++..++|+...
T Consensus 126 l~GIG~kTAd~iLlya~-~r--p~fv-----VDty~~Rv~~RlG~~~~ 165 (218)
T PRK13913 126 QKGIGKESADAILCYVC-AK--EVMV-----VDKYSYLFLKKLGIEIE 165 (218)
T ss_pred CCCccHHHHHHHHHHHc-CC--Cccc-----cchhHHHHHHHcCCCCC
Confidence 36999999999999988 33 2222 24457899999999754
No 142
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=68.57 E-value=5.5 Score=20.58 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=18.6
Q ss_pred cEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 53 HVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 53 ~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
..+.+.|.. =.+|.+||..+||+....
T Consensus 5 ~hv~l~v~D-l~~s~~FY~~lGl~~~~~ 31 (113)
T cd07267 5 AHVRFEHPD-LDKAERFLTDFGLEVAAR 31 (113)
T ss_pred EEEEEccCC-HHHHHHHHHHcCCEEEEe
Confidence 334444443 357899999999987654
No 143
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=68.40 E-value=20 Score=20.40 Aligned_cols=48 Identities=23% Similarity=0.313 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhhcCccEEEEEe-----------cCCcHHHHHHHHhcCceeechhhh
Q 034552 35 AKDAVLMMMAYAVENFGIHVFRAKI-----------GESNGASLRLFQKLGFEDISYSEI 83 (91)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~v~~~~-----------~~~n~~~~~~~~~~Gf~~~~~~~~ 83 (91)
+..+.+.+.+.+. +.|++.+...+ -+..+.+++.+.+.|++.....+.
T Consensus 74 Aq~aa~~~a~k~~-~~Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~I~Dv 132 (149)
T PTZ00129 74 AMMAAQDVAARCK-ELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGRIEDV 132 (149)
T ss_pred HHHHHHHHHHHHH-HcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEec
Confidence 4566777778887 78999999988 577899999999999998765543
No 144
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=67.57 E-value=8.2 Score=19.85 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=18.2
Q ss_pred cEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 53 HVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 53 ~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
..+.+.+.. =.++.+||..+||+....
T Consensus 4 ~hv~l~v~d-~~~s~~FY~~lG~~~~~~ 30 (112)
T cd08344 4 DHFALEVPD-LEVARRFYEAFGLDVREE 30 (112)
T ss_pred eEEEEecCC-HHHHHHHHHHhCCcEEee
Confidence 344444433 468899999999998643
No 145
>COG0271 BolA Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]
Probab=66.83 E-value=16 Score=18.85 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=36.5
Q ss_pred CceeeEEeeeCccccCcchHH--HHHHHHHHHHHhhcCccEEEEEecCCc
Q 034552 16 ELAEVEIMIAEPKSRGKGLAK--DAVLMMMAYAVENFGIHVFRAKIGESN 63 (91)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~--~l~~~~~~~~~~~~~~~~v~~~~~~~n 63 (91)
..-.+...+|+|.|+|+-.-. ++++.++.... ..+++.+.+.+....
T Consensus 37 ~~~Hf~i~IVS~~F~G~s~v~rHr~V~~~L~del-~~~iHALal~t~t~~ 85 (90)
T COG0271 37 GGSHFKVVIVSEAFQGKSLVARHRLVYSALKDEL-SGGIHALALHTYTPE 85 (90)
T ss_pred CCCeEEEEEEchhhCCccHHHHHHHHHHHHHHHH-hccceeeEeEeeccc
Confidence 345678889999999997753 88888888887 667888888876543
No 146
>PRK04531 acetylglutamate kinase; Provisional
Probab=66.19 E-value=13 Score=24.51 Aligned_cols=53 Identities=11% Similarity=0.048 Sum_probs=41.2
Q ss_pred cCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhc
Q 034552 15 LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 73 (91)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~ 73 (91)
+..+++..|++.+.-|+.|++.-+.+.+.+.. +.+.+...++|+.-.-+|++.
T Consensus 308 ~~~~~Ldkf~v~~~~~~~~v~d~vf~~~~~~~------~~L~Wrsr~~n~~~~Wyf~~s 360 (398)
T PRK04531 308 GGGPYLDKFAVLDDARGEGLGRAVWNVMREET------PQLFWRSRHNNTINKFYYAES 360 (398)
T ss_pred CCceEeEEEEEccchhhcChHHHHHHHHHhhC------CceEEEcCCCCCccceeeecc
Confidence 36789999999999999999999999886542 357888888886555455543
No 147
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=65.67 E-value=7.6 Score=19.53 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=16.0
Q ss_pred cHHHHHHHHh-cCceeechhh
Q 034552 63 NGASLRLFQK-LGFEDISYSE 82 (91)
Q Consensus 63 n~~~~~~~~~-~Gf~~~~~~~ 82 (91)
=..+.+||++ +||+.....+
T Consensus 6 ~~~a~~FY~~~lg~~~~~~~~ 26 (108)
T PF12681_consen 6 LEAAAAFYEDVLGFEVVFDDP 26 (108)
T ss_dssp HHHHHHHHHHTTTSEEEEEET
T ss_pred HHHHHHHHHHhcCCEEEEeCC
Confidence 3678999997 9999887544
No 148
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=65.44 E-value=23 Score=20.67 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHhhcCccEEEEEecCCc--HHHHHHHHhcCceeech
Q 034552 34 LAKDAVLMMMAYAVENFGIHVFRAKIGESN--GASLRLFQKLGFEDISY 80 (91)
Q Consensus 34 ~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n--~~~~~~~~~~Gf~~~~~ 80 (91)
.--++++++++.++ +.|...+...-.... ....+.++..||.....
T Consensus 20 T~P~vv~avv~~l~-~~g~~~i~i~e~~~~~~~~~~~~~~~~G~~~~~~ 67 (206)
T PF04015_consen 20 THPEVVRAVVEMLK-EAGAKEIIIAESPGSGAADTREVFKRSGYEEIAE 67 (206)
T ss_pred CCHHHHHHHHHHHH-HcCCCceEEEeCCCcchHhHHHHHHHcchhhHHH
Confidence 34589999999998 778876665544443 47888999999987644
No 149
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=65.27 E-value=11 Score=20.48 Aligned_cols=18 Identities=11% Similarity=0.523 Sum_probs=14.4
Q ss_pred CcHHHHHHHH-hcCceeec
Q 034552 62 SNGASLRLFQ-KLGFEDIS 79 (91)
Q Consensus 62 ~n~~~~~~~~-~~Gf~~~~ 79 (91)
+-.+|++||+ .+||+...
T Consensus 12 DlerSi~FY~~vLG~~~~~ 30 (127)
T cd08358 12 NRNKTIKFYREVLGMKVLR 30 (127)
T ss_pred CHHHHHHHHHHhcCCEEEe
Confidence 3579999995 69999765
No 150
>PHA00771 head assembly protein
Probab=64.89 E-value=22 Score=19.74 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=48.1
Q ss_pred ceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechhhhh
Q 034552 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIF 84 (91)
Q Consensus 17 ~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~~~ 84 (91)
..+-+.++ +|++||. ++ +.-...-+|+.++..+..+...+...-...+-+-.=+|.+.++..+++
T Consensus 62 ~~ecHa~y-~P~fRG~-ya-~~~r~F~kwlL~Nt~f~~vit~vp~kt~~G~vic~lig~rRVG~id~a 126 (151)
T PHA00771 62 TFDCHAMY-LPEIRGF-SK-EIGLAFWRYILTNTTVQCVTSFAARKFRHGQMYCAMIGLKRVGTIKKY 126 (151)
T ss_pred EEEEEeee-Cccccch-hH-HHHHHHHHHHhcCCceeEEEEecccccccchhhhhhhCCceeeeHHHH
Confidence 44555556 5999987 33 677777777776778888887777776677777788899999987654
No 151
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=64.39 E-value=18 Score=22.09 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=28.0
Q ss_pred HHHHHHhhcCccEEEEE---ecCCcHHHHHHHHhcCceeech
Q 034552 42 MMAYAVENFGIHVFRAK---IGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 42 ~~~~~~~~~~~~~v~~~---~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+.+-++ ..|+++|.+- ..+-|....++|++.||+.+..
T Consensus 111 ~~~AL~-alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~ 151 (239)
T TIGR02990 111 AVDGLA-ALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNF 151 (239)
T ss_pred HHHHHH-HcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeee
Confidence 333344 7788888775 3455788999999999998765
No 152
>cd03173 DUF619-like DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases. DUF619-like: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. This subgroup also includes the DUF619 domain of the FABP N-acetylglutamate kinase (NAGK), the enzyme that catalyzes the second reaction of arginine
Probab=63.20 E-value=20 Score=18.76 Aligned_cols=51 Identities=4% Similarity=0.029 Sum_probs=39.1
Q ss_pred cCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHH
Q 034552 15 LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQ 71 (91)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~ 71 (91)
...+.+..+++.+.-++.|++..+.+.+.+. .+.+...+.++|+.-.-+++
T Consensus 31 ~~v~~LdkFav~~~~~~~gv~D~vf~~i~~d------~~~L~Wrsr~~n~~n~Wyf~ 81 (98)
T cd03173 31 NSIPYLDKFAVSDHLWLNNVTDNIFNLIRKD------FPSLLWRVRENDANLKWYFS 81 (98)
T ss_pred CCCEEEEEEEEcccccccCHHHHHHHHHHhh------CCeeEEEeCCCCCccceEEE
Confidence 4688999999999999999999999988654 24678888877754433333
No 153
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=62.44 E-value=14 Score=22.40 Aligned_cols=35 Identities=11% Similarity=0.309 Sum_probs=30.2
Q ss_pred ccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCC
Q 034552 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (91)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~ 62 (91)
|...|+-.|...+..++++|. +.|++.+.+.+...
T Consensus 20 ~~~~GH~~G~~~~~~v~~~c~-~~GI~~lT~yaFSt 54 (226)
T TIGR00055 20 PRAYGHKAGVKSLRRILRWCA-NLGVECLTLYAFST 54 (226)
T ss_pred ChhHhHHHHHHHHHHHHHHHH-HcCCCEEEEEEeeh
Confidence 667788889999999999999 89999999886544
No 154
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=61.97 E-value=18 Score=19.38 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=17.9
Q ss_pred EEEEecCCcHHHHHHHHh-cCceeechh
Q 034552 55 FRAKIGESNGASLRLFQK-LGFEDISYS 81 (91)
Q Consensus 55 v~~~~~~~n~~~~~~~~~-~Gf~~~~~~ 81 (91)
+.+.| .+=.++.+||++ +||+.....
T Consensus 4 i~i~V-~D~e~s~~FY~~vLGf~~~~~~ 30 (136)
T cd08342 4 VEFYV-GNAKQLASWFSTKLGFEPVAYH 30 (136)
T ss_pred EEEEe-CCHHHHHHHHHHhcCCeEEEec
Confidence 34444 334688899998 999987543
No 155
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=61.77 E-value=8.5 Score=21.19 Aligned_cols=22 Identities=14% Similarity=0.409 Sum_probs=18.8
Q ss_pred eeeCccccCcchHHHHHHHHHH
Q 034552 23 MIAEPKSRGKGLAKDAVLMMMA 44 (91)
Q Consensus 23 ~~v~~~~r~~G~g~~l~~~~~~ 44 (91)
+.+||+++|.-+.+.+.+++-.
T Consensus 60 ILTD~D~~Ge~Irk~l~~~l~~ 81 (127)
T COG1658 60 ILTDPDRKGERIRKKLKEYLPG 81 (127)
T ss_pred EEeCCCcchHHHHHHHHHHhcc
Confidence 4668999999999999888766
No 156
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=60.95 E-value=16 Score=22.29 Aligned_cols=35 Identities=9% Similarity=0.076 Sum_probs=30.0
Q ss_pred ccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCC
Q 034552 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (91)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~ 62 (91)
|...|+-.|...+..++++|. +.|++.+.+.+...
T Consensus 27 ~~~~GH~~G~~~~~~i~~~c~-~~GI~~lT~YaFS~ 61 (230)
T PRK14837 27 SFFEGHKEGLKRAKEIVKHSL-KLGIKYLSLYVFST 61 (230)
T ss_pred chhhhHHHHHHHHHHHHHHHH-HcCCCEEEEEEeeh
Confidence 567788889999999999999 89999999886544
No 157
>PRK10150 beta-D-glucuronidase; Provisional
Probab=60.79 E-value=41 Score=23.34 Aligned_cols=64 Identities=19% Similarity=0.116 Sum_probs=45.4
Q ss_pred eeeEEeeeCccc--cCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechhh
Q 034552 18 AEVEIMIAEPKS--RGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (91)
Q Consensus 18 ~~i~~~~v~~~~--r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (91)
..+.-+..+++. +|.++..+.+..-++.++ +.|+..|++...+.+.....+..++|+-...+.+
T Consensus 292 v~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K-~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p 357 (604)
T PRK10150 292 FYFKGFGKHEDADIRGKGLDEVLNVHDHNLMK-WIGANSFRTSHYPYSEEMLDLADRHGIVVIDETP 357 (604)
T ss_pred EEEEeeeccCCCCccCCcCCHHHHHHHHHHHH-HCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecc
Confidence 334443344443 344455666666677787 8999999998777788888888999998876654
No 158
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=60.49 E-value=15 Score=22.60 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=30.5
Q ss_pred ccccCcchHHHHHHHHHHHHHhhcCccEEEEEecC-Cc
Q 034552 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGE-SN 63 (91)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~-~n 63 (91)
+...|+-.|...+..++.+|. +.|++.+.+.+.. +|
T Consensus 41 ~~~~GH~~G~~~l~~i~~~c~-~~GI~~vT~yaFS~eN 77 (249)
T PRK14831 41 PRIMGHRRGVDALKDLLRCCK-DWGIGALTAYAFSTEN 77 (249)
T ss_pred chhhhHHHHHHHHHHHHHHHH-HcCCCEEEEeecchhh
Confidence 456677789999999999999 8999999999877 44
No 159
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=60.11 E-value=9.9 Score=19.38 Aligned_cols=18 Identities=17% Similarity=0.409 Sum_probs=14.1
Q ss_pred CcHHHHHHHHh-cCceeec
Q 034552 62 SNGASLRLFQK-LGFEDIS 79 (91)
Q Consensus 62 ~n~~~~~~~~~-~Gf~~~~ 79 (91)
+=..+.+||++ +||+...
T Consensus 10 Dl~~s~~FY~~~lG~~~~~ 28 (112)
T cd07238 10 DPEAAAAFYADVLGLDVVM 28 (112)
T ss_pred CHHHHHHHHHHhcCceEEE
Confidence 34678999987 9999763
No 160
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=57.91 E-value=17 Score=20.36 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=18.5
Q ss_pred CccEEEEEecCCcHHHHHHHHh-cCceee
Q 034552 51 GIHVFRAKIGESNGASLRLFQK-LGFEDI 78 (91)
Q Consensus 51 ~~~~v~~~~~~~n~~~~~~~~~-~Gf~~~ 78 (91)
++..+.+.|.. =..|+.||++ +||+..
T Consensus 4 ~i~Hv~i~V~D-le~s~~FY~~~LG~~~~ 31 (162)
T TIGR03645 4 TFSHIGISVPD-LDAAVKFYTEVLGWYLI 31 (162)
T ss_pred eEEEEEEEeCC-HHHHHHHHHHhcCCEEE
Confidence 34555555544 4689999976 899875
No 161
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=57.81 E-value=21 Score=20.47 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhcCccEEEEE-e---cCCcHHHHHHHHhcCceeech
Q 034552 39 VLMMMAYAVENFGIHVFRAK-I---GESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 39 ~~~~~~~~~~~~~~~~v~~~-~---~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+++++++++ ..|++++-+- + ...-....++++..||.....
T Consensus 43 veEiieFak-~mgykkiGiAfCiGL~~EA~~~~~iL~~~gFev~sV 87 (157)
T PF08901_consen 43 VEEIIEFAK-RMGYKKIGIAFCIGLRKEARILAKILEANGFEVYSV 87 (157)
T ss_pred HHHHHHHHH-HcCCCeeeehhhHhHHHHHHHHHHHHHHCCCEEEEE
Confidence 577888888 8888887654 2 222344556778889987654
No 162
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=57.66 E-value=3.4 Score=22.51 Aligned_cols=14 Identities=7% Similarity=0.081 Sum_probs=0.0
Q ss_pred CccceEEEeecCCC
Q 034552 1 MVGDVNIYMNDLDN 14 (91)
Q Consensus 1 ~VG~~~~~~~~~~~ 14 (91)
++|+|.+++..-.+
T Consensus 10 ~lgYciYFD~KRR~ 23 (121)
T PF02064_consen 10 FLGYCIYFDYKRRS 23 (121)
T ss_dssp --------------
T ss_pred HHHHHhhccccccc
Confidence 46777777665333
No 163
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=57.13 E-value=30 Score=18.72 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhhcCccEEEEEecC-----------CcHHHHHHHHhcCceeechhh
Q 034552 35 AKDAVLMMMAYAVENFGIHVFRAKIGE-----------SNGASLRLFQKLGFEDISYSE 82 (91)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~v~~~~~~-----------~n~~~~~~~~~~Gf~~~~~~~ 82 (91)
+....+.+.+.+. +.|++.+...+.- ..+.+++-..+.|++.....+
T Consensus 48 Aq~aa~~~~~~~~-~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I~D 105 (114)
T TIGR03628 48 AMQAAGRAAEKAK-ERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIED 105 (114)
T ss_pred HHHHHHHHHHHHH-HcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEEEE
Confidence 4567777888888 8899999888744 568899999999999876544
No 164
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=56.89 E-value=36 Score=19.54 Aligned_cols=59 Identities=12% Similarity=0.230 Sum_probs=31.4
Q ss_pred eeeEEeeeCccccCcchHHHHHHHHH---HHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechhhhh
Q 034552 18 AEVEIMIAEPKSRGKGLAKDAVLMMM---AYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIF 84 (91)
Q Consensus 18 ~~i~~~~v~~~~r~~G~g~~l~~~~~---~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~~~ 84 (91)
.....+++||.| +..++..... +.+. +.+.+.+ +.+...+.. .+.+.+|++++.-.+.+
T Consensus 85 ~~~d~vv~DPPF----l~~ec~~k~a~ti~~L~-k~~~kii-~~Tg~~~~~--~~~~ll~~~~~~f~p~h 146 (162)
T PF10237_consen 85 GKFDVVVIDPPF----LSEECLTKTAETIRLLL-KPGGKII-LCTGEEMEE--LIKKLLGLRMCDFQPEH 146 (162)
T ss_pred CCceEEEECCCC----CCHHHHHHHHHHHHHHh-CccceEE-EecHHHHHH--HHHHHhCeeEEeEEecc
Confidence 367888999999 4444443322 3332 2244444 444444422 23344488877665544
No 165
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=56.78 E-value=20 Score=18.35 Aligned_cols=27 Identities=7% Similarity=0.197 Sum_probs=17.3
Q ss_pred EEEEEecCCcHHHHHHHHh-cCceeechh
Q 034552 54 VFRAKIGESNGASLRLFQK-LGFEDISYS 81 (91)
Q Consensus 54 ~v~~~~~~~n~~~~~~~~~-~Gf~~~~~~ 81 (91)
.+.+.| .+=..+.+||.+ +||+.....
T Consensus 4 hv~l~v-~d~~~a~~FY~~~lG~~~~~~~ 31 (126)
T cd08346 4 HVTLIT-RDAQETVDFYTDVLGLRLVKKT 31 (126)
T ss_pred cEEEEc-CChhHhHHHHHHccCCEEeeeE
Confidence 344433 334678899974 899877543
No 166
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=56.70 E-value=33 Score=19.08 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=31.4
Q ss_pred cccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCcee
Q 034552 28 KSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (91)
Q Consensus 28 ~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~ 77 (91)
|=||-|+|+.+++.+.+.+- + . +.....-.|..|-....|.|-..
T Consensus 6 DGQGGGiG~~iv~~lr~~~~-~-~---~eI~AlGTNa~AT~~MlKaGA~~ 50 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELP-E-E---VEIIALGTNAIATSAMLKAGANE 50 (131)
T ss_pred eCCCChhHHHHHHHHHHhCC-C-C---cEEEEEehhHHHHHHHHHcCCCC
Confidence 67899999999999977654 2 2 33334445777777777777653
No 167
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=56.61 E-value=29 Score=19.91 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=19.1
Q ss_pred hcCccEEEEEecCCcHHHHHHHHhcCceeechhh
Q 034552 49 NFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (91)
Q Consensus 49 ~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (91)
.+|+++|.+-+ .|+.-....+.+|-+.++.++
T Consensus 137 dLGV~~~rLLt--nnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 137 DLGVKKMRLLT--NNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HTT--SEEEE---S-HHHHHHHHHTT--EEEEE-
T ss_pred HcCCCEEEECC--CChhHHHHHhcCCCEEEEEec
Confidence 67889887654 467777888899988887654
No 168
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=56.14 E-value=21 Score=21.82 Aligned_cols=35 Identities=14% Similarity=0.306 Sum_probs=29.9
Q ss_pred ccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCC
Q 034552 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (91)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~ 62 (91)
|...|+-.|...+..++++|. +.|++.+.+.+...
T Consensus 24 ~~~~GH~~G~~~l~~i~~~~~-~lgIk~lTvYaFS~ 58 (233)
T PRK14841 24 PRIKGHQRGAEVLHNTVKWSL-ELGIKYLTAFSFST 58 (233)
T ss_pred chhhhHHHHHHHHHHHHHHHH-HcCCCEEEEEeeeH
Confidence 566788889999999999999 89999999886554
No 169
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=55.61 E-value=35 Score=19.00 Aligned_cols=47 Identities=19% Similarity=0.154 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhhcCccEEEEEecC-----------CcHHHHHHHHhcCceeechhh
Q 034552 35 AKDAVLMMMAYAVENFGIHVFRAKIGE-----------SNGASLRLFQKLGFEDISYSE 82 (91)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~v~~~~~~-----------~n~~~~~~~~~~Gf~~~~~~~ 82 (91)
+....+.+.+.+. +.|++.+...+.- ..+.+++.+.+.|++.....+
T Consensus 55 Aq~aae~~~~~~~-~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I~D 112 (132)
T PRK09607 55 AMQAAEKAAEDAK-EKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIED 112 (132)
T ss_pred HHHHHHHHHHHHH-HcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEEEE
Confidence 4567777778887 8899999888754 567899999999999876544
No 170
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=55.41 E-value=14 Score=18.95 Aligned_cols=29 Identities=14% Similarity=0.368 Sum_probs=19.6
Q ss_pred cEEEEEecCCcHHHHHHHHh-cCceeechhh
Q 034552 53 HVFRAKIGESNGASLRLFQK-LGFEDISYSE 82 (91)
Q Consensus 53 ~~v~~~~~~~n~~~~~~~~~-~Gf~~~~~~~ 82 (91)
..+.+.+.. =+.+.+||.+ +||+.+....
T Consensus 3 ~Hi~i~v~d-~~~~~~FY~~~lG~~~~~~~~ 32 (128)
T PF00903_consen 3 DHIAIRVKD-LEKAIDFYTDVLGFRLVEESD 32 (128)
T ss_dssp EEEEEEESC-HHHHHHHHHHTTTSEEEEEEE
T ss_pred EEEEEEcCC-HHHHHHHHHHHhCCcEEeeec
Confidence 344444444 4588999974 9999887654
No 171
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=55.24 E-value=23 Score=21.79 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=29.8
Q ss_pred ccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCC
Q 034552 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (91)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~ 62 (91)
|...|+-.|.+-+..++++|. +.|++.+.+.+...
T Consensus 29 ~~~~GH~~G~~~l~~i~~~c~-~lgI~~vTvYaFS~ 63 (241)
T PRK14842 29 KRSEGHREGANAIDRLMDASL-EYGLKNISLYAFST 63 (241)
T ss_pred ChhHhHHHHHHHHHHHHHHHH-HcCCCEEEEEEeeh
Confidence 566777789999999999999 89999999886554
No 172
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=55.00 E-value=47 Score=20.31 Aligned_cols=50 Identities=8% Similarity=0.073 Sum_probs=38.4
Q ss_pred cchHHHHHHHHHHHHHhhc-CccEEEEEecCCcHHHHHHHHhcCceeechh
Q 034552 32 KGLAKDAVLMMMAYAVENF-GIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (91)
Q Consensus 32 ~G~g~~l~~~~~~~~~~~~-~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~ 81 (91)
-|.|-.++..+++...+.. ++.++.+.-...-...+.+....+|....+.
T Consensus 92 AGMGG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 92 AGMGGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAET 142 (226)
T ss_pred eCCcHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeeee
Confidence 3788888888888776333 5677888777777788889999999987653
No 173
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=54.98 E-value=19 Score=22.09 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=30.0
Q ss_pred ccccCcchHHHHHHHHHHHHHhhcCccEEEEEec-CCc
Q 034552 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIG-ESN 63 (91)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~-~~n 63 (91)
|...|+-.|...+..++.+|. +.|++.+.+.+. .+|
T Consensus 35 ~~~~GH~~G~~~l~~iv~~c~-~~gI~~vTvYaFS~eN 71 (243)
T PRK14829 35 KRTEGHKAGEPVLFDVVAGAI-EAGVPYLSLYTFSTEN 71 (243)
T ss_pred ChhHHHHHHHHHHHHHHHHHH-HcCCCEEEEeeecchh
Confidence 456677789999999999999 899999999877 444
No 174
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=54.51 E-value=29 Score=17.69 Aligned_cols=29 Identities=21% Similarity=0.439 Sum_probs=19.6
Q ss_pred ccEEEEEecCCcHHHHHHHHh-cCceeechh
Q 034552 52 IHVFRAKIGESNGASLRLFQK-LGFEDISYS 81 (91)
Q Consensus 52 ~~~v~~~~~~~n~~~~~~~~~-~Gf~~~~~~ 81 (91)
+..+.+.+ .+-.++.+||++ +||+.....
T Consensus 4 l~hi~l~v-~d~~~s~~Fy~~~lG~~~~~~~ 33 (125)
T cd07253 4 IDHVVLTV-ADIEATLDFYTRVLGMEVVRFG 33 (125)
T ss_pred cceEEEEe-cCHHHHHHHHHHHhCceeeccc
Confidence 34455544 345688899987 899987654
No 175
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=54.34 E-value=21 Score=18.52 Aligned_cols=28 Identities=7% Similarity=0.358 Sum_probs=17.8
Q ss_pred cEEEEEecCCcHHHHHHHHh-cCceeechh
Q 034552 53 HVFRAKIGESNGASLRLFQK-LGFEDISYS 81 (91)
Q Consensus 53 ~~v~~~~~~~n~~~~~~~~~-~Gf~~~~~~ 81 (91)
..+.+.+.. =.+|.+||.+ +||+.....
T Consensus 6 ~hv~l~v~D-l~~s~~FY~~~lG~~~~~~~ 34 (122)
T cd07265 6 GHVQLRVLD-LEEAIKHYREVLGLDEVGRD 34 (122)
T ss_pred eEEEEEeCC-HHHHHHHHHhccCCEeeeec
Confidence 344444443 4678889965 899876543
No 176
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=53.79 E-value=24 Score=18.25 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=18.6
Q ss_pred cEEEEEecCCcHHHHHHHHh-cCceeechh
Q 034552 53 HVFRAKIGESNGASLRLFQK-LGFEDISYS 81 (91)
Q Consensus 53 ~~v~~~~~~~n~~~~~~~~~-~Gf~~~~~~ 81 (91)
..+.+.+.. =.++.+||.+ +||+.....
T Consensus 4 ~hi~l~v~d-~~~~~~Fy~~~lG~~~~~~~ 32 (125)
T cd07255 4 GAVTLRVAD-LERSLAFYQDVLGLEVLERT 32 (125)
T ss_pred EEEEEEECC-HHHHHHHHHhccCcEEEEcC
Confidence 445554543 3578889975 899987653
No 177
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=53.54 E-value=8.2 Score=21.54 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=21.1
Q ss_pred CccEEEEEecCCcHHHHHHHHhcCceeechh
Q 034552 51 GIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (91)
Q Consensus 51 ~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~ 81 (91)
|+.-|...+.. -..+..++.++||+.+++.
T Consensus 9 G~dFvEFa~~~-~~~l~~~~~~lGF~~~a~h 38 (139)
T PF14696_consen 9 GFDFVEFAVPD-AQALAQLFTALGFQPVARH 38 (139)
T ss_dssp EEEEEEEE-SS-TTSCHHHHCCCCEEEECCE
T ss_pred CeEEEEEecCC-HHHHHHHHHHhCcceEEec
Confidence 55666666655 4566778899999999864
No 178
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=53.33 E-value=25 Score=21.31 Aligned_cols=35 Identities=6% Similarity=0.185 Sum_probs=29.6
Q ss_pred ccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCC
Q 034552 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (91)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~ 62 (91)
|...|+-.|...+..++++|. +.|++.+.+.+...
T Consensus 21 ~~~~GH~~G~~~~~~i~~~~~-~~gI~~lTvyaFS~ 55 (221)
T cd00475 21 DRIEGHKAGAEKLRDILRWCL-ELGVKEVTLYAFST 55 (221)
T ss_pred ChhHhHHHHHHHHHHHHHHHH-HcCCCEEEEEeech
Confidence 566777789999999999999 89999999886543
No 179
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=53.33 E-value=20 Score=22.19 Aligned_cols=35 Identities=14% Similarity=0.276 Sum_probs=29.3
Q ss_pred ccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCC
Q 034552 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (91)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~ 62 (91)
|...|+-.|...+..++++|. +.|++.+.+.+...
T Consensus 39 ~~~~GH~~G~~~l~~i~~~c~-~~gI~~lTvyaFS~ 73 (253)
T PRK14832 39 PRIAGHRQGARTLKELLRCCK-DWGIKALTAYAFST 73 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEEeeh
Confidence 556677779999999999999 89999999886543
No 180
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=53.17 E-value=53 Score=20.40 Aligned_cols=66 Identities=12% Similarity=0.076 Sum_probs=41.3
Q ss_pred CceeeEEeeeCccccCcc--hHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechhh
Q 034552 16 ELAEVEIMIAEPKSRGKG--LAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (91)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G--~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (91)
+...|.-+.-++++-..| .-.+.+..-+..++ +.|+..|++...+.++....+..++|+-...+.+
T Consensus 13 k~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k-~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~ 80 (298)
T PF02836_consen 13 KPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMK-EMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIP 80 (298)
T ss_dssp EEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHH-HTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S
T ss_pred EEEEEEEEeeCcCcccccccCCHHHHHHHHHHHH-hcCcceEEcccccCcHHHHHHHhhcCCEEEEecc
Confidence 344555555566554444 44577777677777 8999999998778788888888999998765544
No 181
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=53.09 E-value=22 Score=18.51 Aligned_cols=26 Identities=15% Similarity=0.092 Sum_probs=17.0
Q ss_pred EEEEEecCCcHHHHHHHHh-cCceeech
Q 034552 54 VFRAKIGESNGASLRLFQK-LGFEDISY 80 (91)
Q Consensus 54 ~v~~~~~~~n~~~~~~~~~-~Gf~~~~~ 80 (91)
.+.+.|.. =.+|.+||.. +||+....
T Consensus 5 ~v~l~v~D-l~~s~~FY~~~LG~~~~~~ 31 (120)
T cd07252 5 YLGVESSD-LDAWRRFATDVLGLQVGDR 31 (120)
T ss_pred EEEEEeCC-HHHHHHHHHhccCceeccC
Confidence 34454544 3478899966 89987544
No 182
>PF03376 Adeno_E3B: Adenovirus E3B protein; InterPro: IPR005041 Adenoviruses are medium-sized, non-enveloped viruses containing double-stranded DNA. They can cause a variety of diseases including pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. These viruses have many mechanisms to evade the host immune response, including several proteins which are expressed as part of the early transcription unit 3 (E3) []. One of the regions of E3, known as the E3B region, encodes three proteins known as 10.4K, 14.5K and 14.7K. Two of these proteins, 10.4K and 14.5K, form the RID complex (receptor internalisation and degradation) which protects the infected cell from host-induced lysis by clearing the the TNF and Fas receptors from the cell surface []. Other receptors, such as the epidermal growth factor receptor, are also known to be cleared by RID []. This entry represents the E3B region 10.4K protein, also known as the RID alpha subunit.; GO: 0016020 membrane
Probab=52.98 E-value=7.3 Score=18.79 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=10.6
Q ss_pred eCccccCcchHHHH
Q 034552 25 AEPKSRGKGLAKDA 38 (91)
Q Consensus 25 v~~~~r~~G~g~~l 38 (91)
-+|+||++.+++.+
T Consensus 52 HhPqYrn~~iA~LL 65 (67)
T PF03376_consen 52 HHPQYRNQQIAALL 65 (67)
T ss_pred cCchhcCHHHHHHh
Confidence 47999999887643
No 183
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=52.74 E-value=18 Score=18.61 Aligned_cols=28 Identities=11% Similarity=0.198 Sum_probs=18.2
Q ss_pred ccEEEEEecCCcHHHHHHHHh-cCceeech
Q 034552 52 IHVFRAKIGESNGASLRLFQK-LGFEDISY 80 (91)
Q Consensus 52 ~~~v~~~~~~~n~~~~~~~~~-~Gf~~~~~ 80 (91)
+..+.+.|. +=..+.+||.+ +||+....
T Consensus 5 i~hi~l~v~-d~~~~~~Fy~~~lG~~~~~~ 33 (121)
T cd07266 5 LGHVELRVT-DLEKSREFYVDVLGLVETEE 33 (121)
T ss_pred eeEEEEEcC-CHHHHHHHHHhccCCEEecc
Confidence 344555453 34678889976 89987654
No 184
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=52.72 E-value=23 Score=22.82 Aligned_cols=35 Identities=9% Similarity=0.160 Sum_probs=29.7
Q ss_pred ccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCC
Q 034552 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (91)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~ 62 (91)
|...|+-.|.+.+..++++|. +.|++.+.+.+...
T Consensus 40 ~~~~GH~~G~~~l~~il~~c~-~lGIk~lTlYAFSt 74 (322)
T PTZ00349 40 HSAIGHFMGSKALIQIIEICI-KLKIKILSVFSFSL 74 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEEeeh
Confidence 566688889999999999999 89999999886543
No 185
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=52.43 E-value=35 Score=21.19 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=30.9
Q ss_pred CccccCcchHHHHHHHHHHHHHhhcCccEEEEEec
Q 034552 26 EPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIG 60 (91)
Q Consensus 26 ~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~ 60 (91)
-|.|--.|++++.+++..+|+..+.|.+.++....
T Consensus 152 vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaI 186 (259)
T COG0623 152 VPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAI 186 (259)
T ss_pred cCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeee
Confidence 39999999999999999999998889888887643
No 186
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=52.35 E-value=30 Score=20.55 Aligned_cols=51 Identities=20% Similarity=0.288 Sum_probs=33.2
Q ss_pred chHHHHH-HHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechhhhhhhh
Q 034552 33 GLAKDAV-LMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKEA 87 (91)
Q Consensus 33 G~g~~l~-~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~~~~~~ 87 (91)
|-|+.-+ .++.+.++ +.|.+.. +.+.+..-..+...+||...++.+....+
T Consensus 33 GsGKSTiA~ale~~L~-~~G~~~y---~LDGDnvR~gL~~dLgFs~edR~eniRRv 84 (197)
T COG0529 33 GSGKSTIANALEEKLF-AKGYHVY---LLDGDNVRHGLNRDLGFSREDRIENIRRV 84 (197)
T ss_pred CCCHHHHHHHHHHHHH-HcCCeEE---EecChhHhhcccCCCCCChHHHHHHHHHH
Confidence 4555434 44444555 6776644 55566666778899999999888766543
No 187
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=52.30 E-value=15 Score=18.48 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=15.1
Q ss_pred cHHHHHHHHh-cCceeechh
Q 034552 63 NGASLRLFQK-LGFEDISYS 81 (91)
Q Consensus 63 n~~~~~~~~~-~Gf~~~~~~ 81 (91)
=..+.+||++ +||+.....
T Consensus 9 ~~~s~~FY~~~lg~~~~~~~ 28 (112)
T cd08349 9 IERSLAFYRDVLGFEVDWEH 28 (112)
T ss_pred HHHHHHHHHhccCeEEEEEc
Confidence 4578999998 999976544
No 188
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=52.16 E-value=27 Score=21.31 Aligned_cols=35 Identities=6% Similarity=0.105 Sum_probs=29.2
Q ss_pred ccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCC
Q 034552 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (91)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~ 62 (91)
|...|+-.|...+..++++|. +.|++.+.+.+...
T Consensus 25 ~~~~GH~~G~~~l~~~~~~c~-~~gI~~lTvyaFS~ 59 (233)
T PRK14833 25 ARAAGHKKGVKTLREITIWCA-NHKLECLTLYAFST 59 (233)
T ss_pred ChhhhHHHHHHHHHHHHHHHH-HcCCCEEEEeecch
Confidence 456677789999999999999 89999999886554
No 189
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=51.80 E-value=24 Score=21.82 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=29.1
Q ss_pred ccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCC
Q 034552 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (91)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~ 62 (91)
|...|+-.|...+..++++|. +.|++.+.+.+...
T Consensus 43 ~~~~GH~~G~~~l~~v~~~c~-~~GIk~lTvYaFS~ 77 (250)
T PRK14840 43 RAISGHYYGAKSLPQIVDTAL-HLGIEVLTLFAFST 77 (250)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEEeeh
Confidence 456667779999999999999 89999999886554
No 190
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=51.75 E-value=30 Score=17.43 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=19.9
Q ss_pred cEEEEEecCCcHHHHHHHHh-cCceeechhh
Q 034552 53 HVFRAKIGESNGASLRLFQK-LGFEDISYSE 82 (91)
Q Consensus 53 ~~v~~~~~~~n~~~~~~~~~-~Gf~~~~~~~ 82 (91)
..+.+.|.. =..|..||.. +||+......
T Consensus 4 ~hv~l~v~d-l~~s~~FY~~~LG~~~~~~~~ 33 (138)
T COG0346 4 HHVTLAVPD-LEASIDFYTDVLGLRLVKDTV 33 (138)
T ss_pred EEEEEeeCC-HhHhHHHHHhhcCCeeeeecc
Confidence 344444444 4689999986 9999876543
No 191
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=51.73 E-value=35 Score=22.52 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=36.8
Q ss_pred cccCcchHHHHHHHHHHHHHhhcCccEEEEEe---------------cCCcHHHHHHHHhcCceeechhhhh
Q 034552 28 KSRGKGLAKDAVLMMMAYAVENFGIHVFRAKI---------------GESNGASLRLFQKLGFEDISYSEIF 84 (91)
Q Consensus 28 ~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~---------------~~~n~~~~~~~~~~Gf~~~~~~~~~ 84 (91)
+|...-+-..+++.+.++++ +.++-.+...- ...|...+..+.++||...+....+
T Consensus 74 d~~d~ell~~f~~~Lk~~ak-k~~a~~lridP~~~~~~~~~~g~~~~~~~~~~~~~~l~~~G~~~~g~~~~~ 144 (406)
T PF02388_consen 74 DYSDEELLEFFLEELKKYAK-KKRALFLRIDPNVIYQERDEDGEPIEGEENDELIENLKALGFRHQGFTKGY 144 (406)
T ss_dssp -TT-HHHHHHHHHHHHHHHC-TTTEEEEEE--S-EEECE-TTS-EEEE-S-THHHHHHHHTT-CCTS-SSST
T ss_pred CCCCHHHHHHHHHHHHHHHH-HCCEEEEEEeCchhhhhcccccccccCcchHHHHHHHHhcCceecCcccCC
Confidence 78888889999999999998 55554444331 2346788899999999988765543
No 192
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=51.62 E-value=22 Score=21.61 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=29.2
Q ss_pred ccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCC
Q 034552 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (91)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~ 62 (91)
|...|+-.|...+..++++|. +.|++.+.+.+...
T Consensus 14 ~~~~GH~~G~~~l~~i~~~c~-~~GI~~lT~yaFS~ 48 (229)
T PRK10240 14 IRAFGHKAGAKSVRRAVSFAA-NNGIEALTLYAFSS 48 (229)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEeeeh
Confidence 456677789999999999999 89999999886554
No 193
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=51.19 E-value=22 Score=22.61 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=29.4
Q ss_pred ccccCcchHHHHHHHHHHHHHhhcCccEEEEEec-CCc
Q 034552 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIG-ESN 63 (91)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~-~~n 63 (91)
+...|+-.|...+..++++|. +.|++.+.+++. .+|
T Consensus 88 ~~~~GH~~G~~~l~~v~~~c~-~lGI~~lTvYaFStEN 124 (296)
T PRK14827 88 ARTEGHKMGEAVVIDIACGAI-ELGIKWLSLYAFSTEN 124 (296)
T ss_pred CHhHHHHHHHHHHHHHHHHHH-HcCCCEEEEeeecchh
Confidence 455566678899999999999 899999999877 444
No 194
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=51.17 E-value=16 Score=18.43 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=15.5
Q ss_pred CcHHHHHHHHh-cCceeechh
Q 034552 62 SNGASLRLFQK-LGFEDISYS 81 (91)
Q Consensus 62 ~n~~~~~~~~~-~Gf~~~~~~ 81 (91)
+-.++.+||.+ +||+.....
T Consensus 8 d~~~~~~fY~~~lG~~~~~~~ 28 (119)
T cd07263 8 DQDKALAFYTEKLGFEVREDV 28 (119)
T ss_pred CHHHHHHHHHhccCeEEEEee
Confidence 34678899987 999987653
No 195
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=51.06 E-value=42 Score=21.05 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=28.0
Q ss_pred cccCcchHHHHHHHHHHHHHhhcCccEEEEEecCC
Q 034552 28 KSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (91)
Q Consensus 28 ~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~ 62 (91)
.-.|+-.|-..+..++++|. +.|++.|.+.+...
T Consensus 58 ~~~GH~aGf~~l~~ile~C~-~lGI~~vT~fAFSi 91 (271)
T KOG1602|consen 58 TSEGHEAGFEALKEILELCK-ELGIKEVTVFAFSI 91 (271)
T ss_pred cccchHHHHHHHHHHHHHHH-HcCCcEEEEEEEeh
Confidence 35566778899999999999 99999999886543
No 196
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=50.06 E-value=33 Score=21.21 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=28.9
Q ss_pred ccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCC
Q 034552 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (91)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~ 62 (91)
+...|+-.|..-+..++++|. +.|++.+.+.+...
T Consensus 35 ~~~~GH~~G~~~l~~i~~~c~-~lgI~~lTvYaFS~ 69 (249)
T PRK14834 35 PRAAGHRAGVEALRRVVRAAG-ELGIGYLTLFAFSS 69 (249)
T ss_pred chhhhHHHHHHHHHHHHHHHH-HcCCCEEEEEEEec
Confidence 455577778999999999999 89999999987544
No 197
>PRK10291 glyoxalase I; Provisional
Probab=50.05 E-value=17 Score=19.12 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=14.0
Q ss_pred cHHHHHHHHh-cCceeech
Q 034552 63 NGASLRLFQK-LGFEDISY 80 (91)
Q Consensus 63 n~~~~~~~~~-~Gf~~~~~ 80 (91)
=..|+.||.+ +||+....
T Consensus 7 le~s~~FY~~~LG~~~~~~ 25 (129)
T PRK10291 7 LQRSIDFYTNVLGMKLLRT 25 (129)
T ss_pred HHHHHHHHHhccCCEEEEe
Confidence 4689999965 99997653
No 198
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=49.89 E-value=22 Score=21.40 Aligned_cols=34 Identities=15% Similarity=0.349 Sum_probs=27.5
Q ss_pred ccccCcchHHHHHHHHHHHHHhhcCccEEEEEecC
Q 034552 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGE 61 (91)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~ 61 (91)
|...|+..|.+.+..++++|. +.|++.+.+.+..
T Consensus 15 ~~~~Gh~~G~~~l~~i~~~~~-~~gI~~lTvYaFS 48 (223)
T PF01255_consen 15 PRSEGHRAGAEKLKEIVEWCL-ELGIKYLTVYAFS 48 (223)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH-HCT-SEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEEec
Confidence 455667778899999999999 8999999998655
No 199
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=49.83 E-value=26 Score=21.64 Aligned_cols=68 Identities=12% Similarity=0.086 Sum_probs=39.3
Q ss_pred ceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCc-----HHHHHHHHhcCceeechhhhhhh
Q 034552 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESN-----GASLRLFQKLGFEDISYSEIFKE 86 (91)
Q Consensus 17 ~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n-----~~~~~~~~~~Gf~~~~~~~~~~~ 86 (91)
....+.+++||.|.-.|+.-.+-+.+... + ..|............ ...+++...+||...+..+.|+.
T Consensus 110 ~~~fD~f~TDPPyT~~G~~LFlsRgi~~L-k-~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~dii~~Fn~ 182 (243)
T PF01861_consen 110 RGKFDVFFTDPPYTPEGLKLFLSRGIEAL-K-GEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDIIPDFNR 182 (243)
T ss_dssp SS-BSEEEE---SSHHHHHHHHHHHHHTB---STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEEEEEEEE
T ss_pred hcCCCEEEeCCCCCHHHHHHHHHHHHHHh-C-CCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHHHhhhcc
Confidence 45678899999999988877666665533 3 445443333344431 25778888999999988776643
No 200
>PRK14968 putative methyltransferase; Provisional
Probab=49.78 E-value=46 Score=18.69 Aligned_cols=43 Identities=19% Similarity=0.115 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 37 DAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 37 ~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
.+++.+.+.++ ..|.-.+.......+.....+.++.||+....
T Consensus 129 ~~i~~~~~~Lk-~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 171 (188)
T PRK14968 129 RFLDEVGRYLK-PGGRILLLQSSLTGEDEVLEYLEKLGFEAEVV 171 (188)
T ss_pred HHHHHHHHhcC-CCeEEEEEEcccCCHHHHHHHHHHCCCeeeee
Confidence 45666666665 44544344334445677889999999987653
No 201
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=49.69 E-value=25 Score=17.97 Aligned_cols=28 Identities=7% Similarity=0.176 Sum_probs=17.8
Q ss_pred ccEEEEEecCCcHHHHHHHHh-cCceeech
Q 034552 52 IHVFRAKIGESNGASLRLFQK-LGFEDISY 80 (91)
Q Consensus 52 ~~~v~~~~~~~n~~~~~~~~~-~Gf~~~~~ 80 (91)
+..+.+.+. +=..+.+||.+ +||+....
T Consensus 4 i~hv~l~v~-d~~~s~~FY~~~lG~~~~~~ 32 (120)
T cd08362 4 LRGVGLGVP-DLAAAAAFYREVWGLSVVAE 32 (120)
T ss_pred eeEEEEecC-CHHHHHHHHHhCcCcEEEEe
Confidence 344444443 34678888886 88887644
No 202
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=49.55 E-value=27 Score=17.85 Aligned_cols=25 Identities=4% Similarity=-0.086 Sum_probs=15.9
Q ss_pred EEEEEecCCcHHHHHHHHh-cCceeec
Q 034552 54 VFRAKIGESNGASLRLFQK-LGFEDIS 79 (91)
Q Consensus 54 ~v~~~~~~~n~~~~~~~~~-~Gf~~~~ 79 (91)
.+.+.|. +=.+|.+||++ +||+...
T Consensus 4 Hi~l~v~-dl~~s~~FY~~~lg~~~~~ 29 (125)
T cd07241 4 HVAIWTK-DLERMKAFYVTYFGATSNE 29 (125)
T ss_pred EEEEEec-CHHHHHHHHHHHhCCEeec
Confidence 3444443 34578889976 7998653
No 203
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=49.31 E-value=32 Score=17.49 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=18.1
Q ss_pred CccEEEEEecCCcHHHHHHHH-hcCceeec
Q 034552 51 GIHVFRAKIGESNGASLRLFQ-KLGFEDIS 79 (91)
Q Consensus 51 ~~~~v~~~~~~~n~~~~~~~~-~~Gf~~~~ 79 (91)
++..+.+.+. +=.++.+||. .+||+...
T Consensus 3 ~~~hi~l~v~-d~~~a~~fy~~~lG~~~~~ 31 (125)
T cd08352 3 GIHHVAIICS-DYEKSKEFYVEILGFKVIR 31 (125)
T ss_pred ccceEEEEcC-CHHHHHHHHHHhcCCEEee
Confidence 3445555553 3467788887 59998764
No 204
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=49.30 E-value=11 Score=18.82 Aligned_cols=20 Identities=5% Similarity=0.152 Sum_probs=16.7
Q ss_pred EEEEEecCCcHHHHHHHHhc
Q 034552 54 VFRAKIGESNGASLRLFQKL 73 (91)
Q Consensus 54 ~v~~~~~~~n~~~~~~~~~~ 73 (91)
.+++.+++.|..|+..|...
T Consensus 19 ~LyLDTHP~d~~Al~~y~~~ 38 (78)
T PF12652_consen 19 NLYLDTHPDDQEALEYYNEY 38 (78)
T ss_pred HHHhcCCCCcHHHHHHHHHH
Confidence 46888999999999988764
No 205
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=48.96 E-value=52 Score=20.29 Aligned_cols=45 Identities=27% Similarity=0.424 Sum_probs=35.8
Q ss_pred CcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCcee
Q 034552 31 GKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (91)
Q Consensus 31 ~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~ 77 (91)
+-|.|+--+.+.+.++....|.+.+.....+.| +.++.-.+.+..
T Consensus 10 kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN--~Lrlhfg~~~~~ 54 (243)
T PF06564_consen 10 KGGVGKTTLTANLAWALARLGESVLAIDLDPQN--LLRLHFGLPLDD 54 (243)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHH--HHHHhcCCCCcc
Confidence 368999999999999998889998888888887 566666666554
No 206
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=48.63 E-value=19 Score=18.25 Aligned_cols=20 Identities=15% Similarity=0.348 Sum_probs=16.2
Q ss_pred CcHHHHHHHHh-cCceeechh
Q 034552 62 SNGASLRLFQK-LGFEDISYS 81 (91)
Q Consensus 62 ~n~~~~~~~~~-~Gf~~~~~~ 81 (91)
+-.++.+||.+ +||+.....
T Consensus 12 d~~~~~~FY~~~lg~~~~~~~ 32 (117)
T cd07240 12 DLERALEFYTDVLGLTVLDRD 32 (117)
T ss_pred CHHHHHHHHHhccCcEEEeec
Confidence 45789999998 999987654
No 207
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=48.44 E-value=36 Score=20.23 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=23.5
Q ss_pred hcCccEEEEEecCCcHHHHHHHHhcCceeechhhh
Q 034552 49 NFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEI 83 (91)
Q Consensus 49 ~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~~ 83 (91)
..|++.+.+-++ |+.-..-.+..|-+.+.+.+.
T Consensus 138 dLGI~~irLLtn--np~K~~~l~~~Gi~vverv~~ 170 (193)
T COG0807 138 DLGIKKIRLLTN--NPRKIYGLEGFGINVVERVPL 170 (193)
T ss_pred HcCCcEEEEecC--ChHHHHHHHhCCceEEEEeec
Confidence 678898887665 666666777888777776654
No 208
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=48.16 E-value=30 Score=21.28 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=29.3
Q ss_pred ccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCC
Q 034552 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (91)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~ 62 (91)
+...|+-.|...+..++++|. +.|++.+.+.+...
T Consensus 30 ~~~~GH~~G~~~l~~i~~~c~-~~GI~~lTvYaFS~ 64 (239)
T PRK14839 30 PRLAGHRAGVEAIRRVVEAAP-DLGIGTLTLYAFSS 64 (239)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEEech
Confidence 456677789999999999999 89999999886543
No 209
>PF01722 BolA: BolA-like protein; InterPro: IPR002634 This family consist of the morpho-protein BolA from Escherichia coli and its various homologs. In E. coli, over-expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division []. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase []. BolA is also induced by stress during early stages of growth [] and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5 [, ].; PDB: 1XS3_A 1V60_A 3O2E_A 1NY8_A 3TR3_A 2KZ0_A 2DHM_A 2KDN_A 1V9J_A.
Probab=48.10 E-value=35 Score=16.86 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=33.3
Q ss_pred ceeeEEeeeCccccCcchHH--HHHHHHHHHHHhhcCccEEEEEecC
Q 034552 17 LAEVEIMIAEPKSRGKGLAK--DAVLMMMAYAVENFGIHVFRAKIGE 61 (91)
Q Consensus 17 ~~~i~~~~v~~~~r~~G~g~--~l~~~~~~~~~~~~~~~~v~~~~~~ 61 (91)
...+...++++.|.|+-.-. ++++.++.... ..+++.+...+..
T Consensus 27 ~sHf~i~IvS~~F~g~s~i~rhr~V~~~L~~~i-~~~iHAlsi~t~t 72 (76)
T PF01722_consen 27 GSHFKIIIVSDEFEGKSRIKRHRLVYKALKDEI-KDGIHALSIKTYT 72 (76)
T ss_dssp SSEEEEEEECGGGTTS-HHHHHHHHHHHTHHHH-GCTCSEEEEEEE-
T ss_pred CceEEEEEEcHHhCCCCHHHHHHHHHHHHHHHh-cCCceEEEEEcCC
Confidence 56788899999999997753 78888888777 5668888776643
No 210
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=48.08 E-value=19 Score=18.58 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=13.7
Q ss_pred cHHHHHHHHh-cCceeech
Q 034552 63 NGASLRLFQK-LGFEDISY 80 (91)
Q Consensus 63 n~~~~~~~~~-~Gf~~~~~ 80 (91)
=.+|++||.+ +||+....
T Consensus 10 l~~s~~FY~~~lG~~~~~~ 28 (125)
T cd08357 10 LEAARAFYGDVLGCKEGRS 28 (125)
T ss_pred HHHHHHHHHHhcCCEEeec
Confidence 4678999974 89988654
No 211
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=47.65 E-value=29 Score=21.81 Aligned_cols=35 Identities=9% Similarity=0.242 Sum_probs=27.5
Q ss_pred ccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCC
Q 034552 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (91)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~ 62 (91)
|...|+-.|...+..++++|. +.|++.+.+.+...
T Consensus 62 ~~~~GH~~G~~~l~~i~~~c~-~lGIk~lTvYaFS~ 96 (275)
T PRK14835 62 QREMGHEFGVQKAYEVLEWCL-ELGIPTVTIWVFST 96 (275)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEEEEc
Confidence 344556668899999999999 89999999875443
No 212
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=47.06 E-value=30 Score=18.88 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=18.9
Q ss_pred cCccEEEEEecCCcHHHHHHHH-hcCceeec
Q 034552 50 FGIHVFRAKIGESNGASLRLFQ-KLGFEDIS 79 (91)
Q Consensus 50 ~~~~~v~~~~~~~n~~~~~~~~-~~Gf~~~~ 79 (91)
.++..+.+.+.. =.+|.+||. -+||+...
T Consensus 16 ~~i~hv~l~v~D-l~~a~~FY~~vLG~~~~~ 45 (150)
T TIGR00068 16 RRLLHTMLRVGD-LDKSLDFYTEVLGMKLLR 45 (150)
T ss_pred ceEEEEEEEecC-HHHHHHHHHHhcCCEEEE
Confidence 445556665544 357888996 58998754
No 213
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=46.34 E-value=66 Score=21.86 Aligned_cols=54 Identities=15% Similarity=0.160 Sum_probs=33.7
Q ss_pred EeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCc
Q 034552 22 IMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75 (91)
Q Consensus 22 ~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf 75 (91)
.+.++..+..-|+|.++...+.+..++....+...+.....-......+++.|.
T Consensus 395 vvtvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~~~d~~~~~~~~le~~~l 448 (464)
T PRK11892 395 LVTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGKDVPMPYAANLEKLAL 448 (464)
T ss_pred EEEEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEeccCCccCCcHHHHHHhcC
Confidence 356667777779999999999887653234444444332222234456778877
No 214
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=46.21 E-value=38 Score=17.79 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=13.9
Q ss_pred cHHHHHHHHh-cCceeechh
Q 034552 63 NGASLRLFQK-LGFEDISYS 81 (91)
Q Consensus 63 n~~~~~~~~~-~Gf~~~~~~ 81 (91)
-.++.+||.+ +||+.....
T Consensus 12 ~~~s~~FY~~~lG~~~~~~~ 31 (134)
T cd08348 12 LEAMVRFYRDVLGFTVTDRG 31 (134)
T ss_pred HHHHHHHHHHhcCCEEEeec
Confidence 4578889976 999876543
No 215
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=45.80 E-value=24 Score=17.18 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=16.5
Q ss_pred CCcHHHHHHHHh-cCceeechh
Q 034552 61 ESNGASLRLFQK-LGFEDISYS 81 (91)
Q Consensus 61 ~~n~~~~~~~~~-~Gf~~~~~~ 81 (91)
.+-..+.+||.+ +||+.....
T Consensus 7 ~d~~~~~~fy~~~lg~~~~~~~ 28 (112)
T cd06587 7 SDLEAAVAFYEEVLGFEVLFRN 28 (112)
T ss_pred CCHHHHHHHHHhccCCEEEEee
Confidence 345688999997 999987655
No 216
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=45.68 E-value=33 Score=19.11 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=17.4
Q ss_pred ccEEEEEecCCcHHHHHHHHh-cCceeec
Q 034552 52 IHVFRAKIGESNGASLRLFQK-LGFEDIS 79 (91)
Q Consensus 52 ~~~v~~~~~~~n~~~~~~~~~-~Gf~~~~ 79 (91)
+..+.+.|.. =.+|.+||.. +||+...
T Consensus 4 l~Hv~l~V~D-l~~s~~FY~~vLGl~~~~ 31 (161)
T cd07256 4 LDHFNLRVPD-VDAGLAYYRDELGFRVSE 31 (161)
T ss_pred EEEEEEecCC-HHHHHHHHHhccCCEEEE
Confidence 3444444433 3678899976 8998754
No 217
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=44.94 E-value=16 Score=17.10 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=5.4
Q ss_pred chHHHHHHHHHHHHH
Q 034552 33 GLAKDAVLMMMAYAV 47 (91)
Q Consensus 33 G~g~~l~~~~~~~~~ 47 (91)
||-..++....+..|
T Consensus 7 Gi~~~lVd~F~~mGF 21 (55)
T PF09288_consen 7 GIDKDLVDQFENMGF 21 (55)
T ss_dssp --SHHHHHHHHHHT-
T ss_pred CCCHHHHHHHHHcCC
Confidence 444444444444433
No 218
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=44.65 E-value=23 Score=18.23 Aligned_cols=18 Identities=22% Similarity=0.523 Sum_probs=13.9
Q ss_pred CcHHHHHHHHh-cCceeec
Q 034552 62 SNGASLRLFQK-LGFEDIS 79 (91)
Q Consensus 62 ~n~~~~~~~~~-~Gf~~~~ 79 (91)
+=.++.+||.+ +||+...
T Consensus 10 D~~~s~~FY~~~lG~~~~~ 28 (125)
T cd07264 10 DVEKTLEFYERAFGFERRF 28 (125)
T ss_pred CHHHHHHHHHHhhCCeEEe
Confidence 34688999987 8998754
No 219
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=44.60 E-value=56 Score=18.21 Aligned_cols=36 Identities=19% Similarity=0.014 Sum_probs=23.0
Q ss_pred ccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCC
Q 034552 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (91)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~ 62 (91)
..|+|.||..++++-.-..+.+-..-..+.+...++
T Consensus 14 q~y~GkGYS~~FveN~d~I~~rL~~ge~i~lV~g~D 49 (135)
T COG3543 14 QGYQGKGYSPAFVENYDAIAERLKAGEDIKLVDGPD 49 (135)
T ss_pred eecccccCCHHHHHHHHHHHHHhhcCCCeEEEeccc
Confidence 579999999998887777666333333344433333
No 220
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=44.58 E-value=18 Score=18.04 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=17.6
Q ss_pred EEeeeCccccCcchHHHHHHHHH
Q 034552 21 EIMIAEPKSRGKGLAKDAVLMMM 43 (91)
Q Consensus 21 ~~~~v~~~~r~~G~g~~l~~~~~ 43 (91)
=.+..||+..|+.+..++.+.+.
T Consensus 48 VIiltD~D~aG~~i~~~~~~~l~ 70 (81)
T cd01027 48 VIILTDPDRKGEKIRKKLSEYLS 70 (81)
T ss_pred EEEEECCCHHHHHHHHHHHHHhc
Confidence 34567899999888888877764
No 221
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=44.33 E-value=36 Score=17.44 Aligned_cols=26 Identities=12% Similarity=0.261 Sum_probs=17.8
Q ss_pred EEEEecCCcHHHHHHHHh-cCceeechh
Q 034552 55 FRAKIGESNGASLRLFQK-LGFEDISYS 81 (91)
Q Consensus 55 v~~~~~~~n~~~~~~~~~-~Gf~~~~~~ 81 (91)
+.+.|. +=.++.+||.+ +||+.....
T Consensus 4 v~l~v~-d~~~~~~fy~~~lG~~~~~~~ 30 (128)
T cd07249 4 IGIAVP-DLEAAIKFYRDVLGVGPWEEE 30 (128)
T ss_pred EEEEeC-CHHHHHHHHHHhhCCCCcccc
Confidence 444443 34678889987 999987543
No 222
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=44.09 E-value=79 Score=19.73 Aligned_cols=41 Identities=7% Similarity=0.114 Sum_probs=31.2
Q ss_pred chHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcC
Q 034552 33 GLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLG 74 (91)
Q Consensus 33 G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~G 74 (91)
.+|-++...+.+.+. ..|+..+...+........++.+++|
T Consensus 247 ~~gi~~a~e~~~~l~-~~gv~GvH~~t~n~~~~~~~il~~lg 287 (287)
T PF02219_consen 247 EIGIEIAVELIRELL-AEGVPGVHLYTMNREELVPEILENLG 287 (287)
T ss_dssp HHHHHHHHHHHHHHH-HTT-SEEEEEETTTSHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHH-HcCCCeEEEEcCCCHHHHHHHHHHcC
Confidence 456666666666666 56788899999888899999999887
No 223
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=44.06 E-value=42 Score=20.85 Aligned_cols=33 Identities=6% Similarity=0.106 Sum_probs=27.6
Q ss_pred ccc-cCcchHHHHHHHHHHHHHhhcCccEEEEEec
Q 034552 27 PKS-RGKGLAKDAVLMMMAYAVENFGIHVFRAKIG 60 (91)
Q Consensus 27 ~~~-r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~ 60 (91)
|.. .|+-.|...+..++++|. +.|++.+.+.+.
T Consensus 47 ~~~~~GH~~G~~~l~~~~~~~~-~~gIk~lTvYaF 80 (256)
T PRK14828 47 TDVSQGHRAGAAKIGEFLGWCD-ETDVNVVTLYLL 80 (256)
T ss_pred CchHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEEE
Confidence 344 667788899999999999 899999998755
No 224
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=43.51 E-value=44 Score=21.75 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=29.6
Q ss_pred CceeeEEeeeCccccCcchHHHHHHHHHHHHH
Q 034552 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 47 (91)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~ 47 (91)
..+++..+.++.+.|++.+.--|++++...+.
T Consensus 164 ~~~evNFLCihk~lRsKRltPvLIkEiTRR~n 195 (451)
T COG5092 164 SVLEVNFLCIHKELRSKRLTPVLIKEITRRAN 195 (451)
T ss_pred ccceEEEEEEehhhhhCccchHHHHHHHHhhh
Confidence 57899999999999999999999999998876
No 225
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=43.41 E-value=46 Score=20.61 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=25.6
Q ss_pred cCcchHHHHHHHHHHHHHhhcCccEEEEEecC
Q 034552 30 RGKGLAKDAVLMMMAYAVENFGIHVFRAKIGE 61 (91)
Q Consensus 30 r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~ 61 (91)
.|.-.|...+..++++|. +.|++.+.+.+..
T Consensus 46 ~Gh~~G~~~l~~~l~~c~-~~GI~~vTvYaFS 76 (251)
T PRK14830 46 AGHKAGMDTVKKITKAAS-ELGVKVLTLYAFS 76 (251)
T ss_pred hhHHHHHHHHHHHHHHHH-HcCCCEEEEEEEe
Confidence 356678889999999999 8999999888644
No 226
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=43.22 E-value=39 Score=20.80 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=29.1
Q ss_pred ccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCC
Q 034552 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (91)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~ 62 (91)
|...|+-.|...+..++++|. +.|++.+.+.+...
T Consensus 31 ~~~~GH~~G~~~l~~i~~~~~-~~gI~~lT~YaFS~ 65 (242)
T PRK14838 31 ERSFGHQAGAETVHIITEEAA-RLGVKFLTLYTFST 65 (242)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEeech
Confidence 456677788999999999999 89999999886543
No 227
>PRK11478 putative lyase; Provisional
Probab=43.11 E-value=36 Score=17.68 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=17.6
Q ss_pred ccEEEEEecCCcHHHHHHHH-hcCceeec
Q 034552 52 IHVFRAKIGESNGASLRLFQ-KLGFEDIS 79 (91)
Q Consensus 52 ~~~v~~~~~~~n~~~~~~~~-~~Gf~~~~ 79 (91)
+..+.+.| .+=.++.+||. .+||+...
T Consensus 7 i~hv~l~v-~D~~~a~~FY~~~LG~~~~~ 34 (129)
T PRK11478 7 VHHIAIIA-TDYAVSKAFYCDILGFTLQS 34 (129)
T ss_pred ecEEEEEc-CCHHHHHHHHHHHhCCEecc
Confidence 44455544 33467889995 58999753
No 228
>COG4904 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.72 E-value=29 Score=19.83 Aligned_cols=19 Identities=11% Similarity=0.258 Sum_probs=14.6
Q ss_pred cHHHHHHHHhcCceeechh
Q 034552 63 NGASLRLFQKLGFEDISYS 81 (91)
Q Consensus 63 n~~~~~~~~~~Gf~~~~~~ 81 (91)
...+..||++.||+.....
T Consensus 69 ~k~~~~FYEnyGf~A~elp 87 (174)
T COG4904 69 RKTVEAFYENYGFSAGELP 87 (174)
T ss_pred HHHHHHHHHHcCCCcCCCC
Confidence 3567789999999976544
No 229
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=42.55 E-value=28 Score=17.94 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=15.5
Q ss_pred CcHHHHHHHH-hcCceeech
Q 034552 62 SNGASLRLFQ-KLGFEDISY 80 (91)
Q Consensus 62 ~n~~~~~~~~-~~Gf~~~~~ 80 (91)
+=.+|.+||+ .+||+....
T Consensus 9 d~~~a~~FY~~~lG~~~~~~ 28 (122)
T cd08355 9 DAAAAIDWLTDAFGFEERLV 28 (122)
T ss_pred CHHHHHHHHHHhcCCEEEEE
Confidence 4568999997 999998754
No 230
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=42.33 E-value=33 Score=17.48 Aligned_cols=12 Identities=0% Similarity=-0.139 Sum_probs=5.2
Q ss_pred ccEEEEEecCCc
Q 034552 52 IHVFRAKIGESN 63 (91)
Q Consensus 52 ~~~v~~~~~~~n 63 (91)
++.+...++++.
T Consensus 60 ~~~iiiatD~D~ 71 (100)
T PF01751_consen 60 ADEIIIATDPDR 71 (100)
T ss_dssp CSEEEEEC-SSH
T ss_pred ccEeeecCCCCh
Confidence 444555444443
No 231
>PF15538 Toxin_61: Putative toxin 61
Probab=41.92 E-value=22 Score=20.32 Aligned_cols=31 Identities=10% Similarity=0.145 Sum_probs=24.2
Q ss_pred ecCCcHHHHHHHHhcCceeechhhhhhhhhh
Q 034552 59 IGESNGASLRLFQKLGFEDISYSEIFKEAVD 89 (91)
Q Consensus 59 ~~~~n~~~~~~~~~~Gf~~~~~~~~~~~~~~ 89 (91)
+...-..+..||...||..........++++
T Consensus 21 irgn~e~a~~F~~s~G~~~~~~~~~m~GIDf 51 (157)
T PF15538_consen 21 IRGNREIASDFFKSQGLTEADMESYMNGIDF 51 (157)
T ss_pred eccchHHHHHHHHHcCCCHHHHHHHhccCCc
Confidence 4444578899999999999887777777665
No 232
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=41.66 E-value=44 Score=17.74 Aligned_cols=29 Identities=7% Similarity=0.161 Sum_probs=19.1
Q ss_pred CccEEEEEecCCcHHHHHHHHh-cCceeech
Q 034552 51 GIHVFRAKIGESNGASLRLFQK-LGFEDISY 80 (91)
Q Consensus 51 ~~~~v~~~~~~~n~~~~~~~~~-~Gf~~~~~ 80 (91)
++..+.+.|. +-..+++||.+ +||+....
T Consensus 4 ~i~hv~l~V~-dl~~s~~FY~~~lG~~~~~~ 33 (131)
T cd08364 4 GLSHITLIVK-DLNKTTAFLQNIFNAREVYS 33 (131)
T ss_pred cEeEEEEEeC-CHHHHHHHHHHHhCCeeEEe
Confidence 4455656554 45688899965 99976543
No 233
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=41.39 E-value=43 Score=18.69 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=17.8
Q ss_pred cEEEEEecCCcHHHHHHHHh-cCceeechh
Q 034552 53 HVFRAKIGESNGASLRLFQK-LGFEDISYS 81 (91)
Q Consensus 53 ~~v~~~~~~~n~~~~~~~~~-~Gf~~~~~~ 81 (91)
..+.+.|.. =..+.+||++ +||+.....
T Consensus 3 ~HI~i~V~D-le~s~~FY~~~LG~~~~~~~ 31 (157)
T cd08347 3 HGVTLTVRD-PEATAAFLTDVLGFREVGEE 31 (157)
T ss_pred ccEEEEeCC-HHHHHHHHHHhcCCEEEeee
Confidence 444444433 3688899964 799876543
No 234
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=41.29 E-value=47 Score=17.21 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=17.7
Q ss_pred cEEEEEecCCcHHHHHHHHhc----Cceeech
Q 034552 53 HVFRAKIGESNGASLRLFQKL----GFEDISY 80 (91)
Q Consensus 53 ~~v~~~~~~~n~~~~~~~~~~----Gf~~~~~ 80 (91)
..+...+. +=.++.+||++. ||+....
T Consensus 3 ~Hv~i~v~-d~~~~~~Fy~~~l~~~G~~~~~~ 33 (128)
T cd07242 3 HHVELTVR-DLERSRAFYDWLLGLLGFEEVKE 33 (128)
T ss_pred ceEEEEeC-CHHHHHHHHHHHHhhcCCEEEEe
Confidence 34444443 346788899875 9987654
No 235
>PRK10702 endonuclease III; Provisional
Probab=40.83 E-value=71 Score=19.13 Aligned_cols=40 Identities=10% Similarity=0.232 Sum_probs=29.1
Q ss_pred cchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeec
Q 034552 32 KGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (91)
Q Consensus 32 ~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (91)
.|+|.+....++.+++ .. ..+ .-+....++..++|+....
T Consensus 115 pGVG~ktA~~ill~a~-~~--~~~-----~VDt~v~Rv~~r~g~~~~~ 154 (211)
T PRK10702 115 PGVGRKTANVVLNTAF-GW--PTI-----AVDTHIFRVCNRTQFAPGK 154 (211)
T ss_pred CcccHHHHHHHHHHHc-CC--Ccc-----cccchHHHHHHHhCCCCCC
Confidence 5999999999999988 32 222 2244578999999997543
No 236
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=40.80 E-value=44 Score=17.23 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=17.7
Q ss_pred ccEEEEEecCCcHHHHHHHHh-cCceeech
Q 034552 52 IHVFRAKIGESNGASLRLFQK-LGFEDISY 80 (91)
Q Consensus 52 ~~~v~~~~~~~n~~~~~~~~~-~Gf~~~~~ 80 (91)
+..+.+.|.. =.++.+||.+ +||+....
T Consensus 7 i~hv~l~v~d-l~~a~~FY~~~lG~~~~~~ 35 (121)
T cd09013 7 LAHVELLTPK-PEESLWFFTDVLGLEETGR 35 (121)
T ss_pred eeEEEEEeCC-HHHHHHHHHhCcCCEEEee
Confidence 3444444433 3678889975 69987754
No 237
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=40.61 E-value=87 Score=20.35 Aligned_cols=51 Identities=10% Similarity=0.229 Sum_probs=33.5
Q ss_pred eEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHH--HHHHHhcCceeech
Q 034552 20 VEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGAS--LRLFQKLGFEDISY 80 (91)
Q Consensus 20 i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~--~~~~~~~Gf~~~~~ 80 (91)
.+.+++||.+ .|+..++++.+.+ . -..++.+|++.. -+ .+.+.+ ||+....
T Consensus 289 ~D~v~lDPPR--~G~~~~~l~~l~~-~-----~~ivyvSC~p~t-larDl~~L~~-gY~l~~v 341 (362)
T PRK05031 289 FSTIFVDPPR--AGLDDETLKLVQA-Y-----ERILYISCNPET-LCENLETLSQ-THKVERF 341 (362)
T ss_pred CCEEEECCCC--CCCcHHHHHHHHc-c-----CCEEEEEeCHHH-HHHHHHHHcC-CcEEEEE
Confidence 5788999984 6888888887765 1 245777777733 22 333434 8987654
No 238
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=40.38 E-value=57 Score=19.90 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhc---CccEEEEEecCCcHHHHHHHHhc
Q 034552 39 VLMMMAYAVENF---GIHVFRAKIGESNGASLRLFQKL 73 (91)
Q Consensus 39 ~~~~~~~~~~~~---~~~~v~~~~~~~n~~~~~~~~~~ 73 (91)
-+.++++++ +. ..+.|.-..+++|.-+.++|+.+
T Consensus 80 Rn~AL~~ir-~~~~~~~~GVVyFADDdN~Ysl~lF~em 116 (223)
T cd00218 80 RNLALRWIR-EHLSAKLDGVVYFADDDNTYDLELFEEM 116 (223)
T ss_pred HHHHHHHHH-hccccCcceEEEEccCCCcccHHHHHHH
Confidence 457777777 44 67788888999999999999864
No 239
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=40.37 E-value=51 Score=17.96 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=18.6
Q ss_pred ccEEEEEecCCcHHHHHHHHh-cCceeech
Q 034552 52 IHVFRAKIGESNGASLRLFQK-LGFEDISY 80 (91)
Q Consensus 52 ~~~v~~~~~~~n~~~~~~~~~-~Gf~~~~~ 80 (91)
+..+.+.|.. =.++.+||++ +||+....
T Consensus 7 l~Hv~l~v~D-le~s~~FY~~vLGf~~~~~ 35 (143)
T cd07243 7 LDHCLLTGED-IAETTRFFTDVLDFYLAER 35 (143)
T ss_pred eCEEEEecCC-HHHHHHHHHHhcCCEEEEE
Confidence 3445555544 3578899976 99987554
No 240
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=40.36 E-value=66 Score=17.77 Aligned_cols=44 Identities=18% Similarity=0.357 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechhhhhhhh
Q 034552 39 VLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKEA 87 (91)
Q Consensus 39 ~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~~~~~~ 87 (91)
++.+++.++ +.|++.+.+.. +-|. ++|.-.|+....+...+..+
T Consensus 38 l~l~L~~~k-~~g~~~lfVi~-PvNg---~wydytG~~~~~r~~~y~kI 81 (130)
T PF04914_consen 38 LQLLLDVCK-ELGIDVLFVIQ-PVNG---KWYDYTGLSKEMRQEYYKKI 81 (130)
T ss_dssp HHHHHHHHH-HTT-EEEEEE-----H---HHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCceEEEec-CCcH---HHHHHhCCCHHHHHHHHHHH
Confidence 577888888 88999887744 4342 35555555555544444433
No 241
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=40.12 E-value=28 Score=18.27 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=17.8
Q ss_pred cEEEEEecCCcHHHHHHHHh-cCceeech
Q 034552 53 HVFRAKIGESNGASLRLFQK-LGFEDISY 80 (91)
Q Consensus 53 ~~v~~~~~~~n~~~~~~~~~-~Gf~~~~~ 80 (91)
..+.+.+. +=..|.+||.+ +||+....
T Consensus 8 ~~v~l~v~-d~~~s~~FY~~vLG~~~~~~ 35 (124)
T cd08361 8 AYVRLGTR-DLAGATRFATDILGLQVAER 35 (124)
T ss_pred eEEEEeeC-CHHHHHHHHHhccCceeccC
Confidence 34444444 34688999976 79997654
No 242
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=39.83 E-value=41 Score=15.28 Aligned_cols=20 Identities=10% Similarity=-0.122 Sum_probs=17.5
Q ss_pred cccCcchHHHHHHHHHHHHH
Q 034552 28 KSRGKGLAKDAVLMMMAYAV 47 (91)
Q Consensus 28 ~~r~~G~g~~l~~~~~~~~~ 47 (91)
=||+.-+|..+.+.+-+...
T Consensus 5 lYR~stlG~aL~dtLDeli~ 24 (49)
T PF02268_consen 5 LYRRSTLGIALTDTLDELIQ 24 (49)
T ss_dssp GGGCSHHHHHHHHHHHHHHH
T ss_pred HHHcchHHHHHHHHHHHHHH
Confidence 48999999999999888876
No 243
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=39.78 E-value=53 Score=18.14 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=20.0
Q ss_pred cCccEEEEEecCCcHHHHHHHHh-cCceeec
Q 034552 50 FGIHVFRAKIGESNGASLRLFQK-LGFEDIS 79 (91)
Q Consensus 50 ~~~~~v~~~~~~~n~~~~~~~~~-~Gf~~~~ 79 (91)
.++..+.+.|. +=.++++||.. +||+...
T Consensus 8 ~~l~Hi~l~v~-Dl~~a~~FY~~~LGl~~~~ 37 (154)
T cd07237 8 QGLGHVVLATP-DPDEAHAFYRDVLGFRLSD 37 (154)
T ss_pred CccCEEEEEeC-CHHHHHHHHHHccCCEEEE
Confidence 45566666554 45688899975 9998754
No 244
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=39.71 E-value=82 Score=18.71 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=17.6
Q ss_pred ecCCcHHHHHHHHhcCceeec
Q 034552 59 IGESNGASLRLFQKLGFEDIS 79 (91)
Q Consensus 59 ~~~~n~~~~~~~~~~Gf~~~~ 79 (91)
+...|..+.++|..+|+..+-
T Consensus 45 ~nv~N~~s~~~~~~~G~~~i~ 65 (233)
T PF01136_consen 45 LNVFNSESARFLKELGASRIT 65 (233)
T ss_pred ccCCCHHHHHHHHHcCCCEEE
Confidence 677799999999999988654
No 245
>PRK04017 hypothetical protein; Provisional
Probab=39.19 E-value=34 Score=19.03 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=17.1
Q ss_pred EeeeCccccCcchHHHHHHHHHH
Q 034552 22 IMIAEPKSRGKGLAKDAVLMMMA 44 (91)
Q Consensus 22 ~~~v~~~~r~~G~g~~l~~~~~~ 44 (91)
.+.+||++.|.-+.+.+.+.+..
T Consensus 69 IILTD~D~~GekIr~~l~~~l~~ 91 (132)
T PRK04017 69 IILTDFDRKGEELAKKLSEYLQG 91 (132)
T ss_pred EEEECCCcchHHHHHHHHHHHHh
Confidence 45668999988887777776644
No 246
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=39.10 E-value=1.1e+02 Score=20.14 Aligned_cols=55 Identities=11% Similarity=0.180 Sum_probs=40.5
Q ss_pred EeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeec
Q 034552 22 IMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (91)
Q Consensus 22 ~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (91)
.+.++|......+...|++.+.+.+. +.++..+.+... +..-....+..||....
T Consensus 105 R~l~~~~~~~~~~~~~L~~~~~~~a~-~~~~Ss~h~lF~--~~~~~~~l~~~G~~~r~ 159 (370)
T PF04339_consen 105 RLLIAPGADRAALRAALLQALEQLAE-ENGLSSWHILFP--DEEDAAALEEAGFLSRQ 159 (370)
T ss_pred ceeECCCCCHHHHHHHHHHHHHHHHH-HcCCCcceeecC--CHHHHHHHHhCCCceec
Confidence 35556777777889999999999998 788887765433 33455677889998753
No 247
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=39.07 E-value=83 Score=18.58 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=29.3
Q ss_pred cccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechhh
Q 034552 28 KSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (91)
Q Consensus 28 ~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (91)
++|.-|+|.++++ .+|++.|.+-++ |..-..-...+|-+.++..+
T Consensus 126 d~R~yGiGAQIL~--------dLGV~~mrLLtn--~~~k~~~L~g~GleV~~~~~ 170 (197)
T PRK00393 126 DERDYTLAADMLK--------ALGVKKVRLLTN--NPKKVEALTEAGINIVERVP 170 (197)
T ss_pred cceehhHHHHHHH--------HcCCCEEEECCC--CHHHHHHHHhCCCEEEEEec
Confidence 3566666665543 668898876554 55455566788888876553
No 248
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=38.79 E-value=41 Score=15.03 Aligned_cols=15 Identities=33% Similarity=0.798 Sum_probs=11.1
Q ss_pred HHHHHHHhcCceeec
Q 034552 65 ASLRLFQKLGFEDIS 79 (91)
Q Consensus 65 ~~~~~~~~~Gf~~~~ 79 (91)
...++++++||....
T Consensus 3 el~k~L~~~G~~~~r 17 (56)
T PF07927_consen 3 ELIKLLEKAGFEEVR 17 (56)
T ss_dssp HHHHHHHHTT-EEEE
T ss_pred HHHHHHHHCCCEEec
Confidence 357889999999874
No 249
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=38.23 E-value=28 Score=23.16 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=33.4
Q ss_pred chHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechhhhhhhh
Q 034552 33 GLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKEA 87 (91)
Q Consensus 33 G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~~~~~~ 87 (91)
|.|+--+..+++.-....|+... ....+.--..+.+++||.+.++.+..+.+
T Consensus 60 gagkttis~ale~~l~~~gipcy---~ldgdnirhgl~knlgfs~edreenirri 111 (627)
T KOG4238|consen 60 GAGKTTISFALEEYLVSHGIPCY---SLDGDNIRHGLNKNLGFSPEDREENIRRI 111 (627)
T ss_pred CCCcceeehHHHHHHHhcCCccc---ccCcchhhhhhhhccCCCchhHHHHHHHH
Confidence 55665555555533336677643 44445456778999999999887765543
No 250
>PRK06724 hypothetical protein; Provisional
Probab=37.69 E-value=66 Score=17.25 Aligned_cols=27 Identities=19% Similarity=0.493 Sum_probs=18.1
Q ss_pred CccEEEEEecCCcHHHHHHHHh----cCceee
Q 034552 51 GIHVFRAKIGESNGASLRLFQK----LGFEDI 78 (91)
Q Consensus 51 ~~~~v~~~~~~~n~~~~~~~~~----~Gf~~~ 78 (91)
++..+.+.|..- .+|.+||.+ +||+..
T Consensus 7 ~i~Hv~l~V~Dl-e~s~~FY~~vlg~lg~~~~ 37 (128)
T PRK06724 7 GIHHIEFWVANL-EESISFYDMLFSIIGWRKL 37 (128)
T ss_pred ccCEEEEEeCCH-HHHHHHHHHHHhhCCcEEe
Confidence 456666666543 477788886 577764
No 251
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=37.69 E-value=46 Score=21.47 Aligned_cols=36 Identities=11% Similarity=0.326 Sum_probs=28.2
Q ss_pred EeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEE
Q 034552 22 IMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRA 57 (91)
Q Consensus 22 ~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~ 57 (91)
.++|++.++.-|+|.++...+.+.++..+.....++
T Consensus 255 ~viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv 290 (324)
T COG0022 255 LVIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRV 290 (324)
T ss_pred EEEEEeccccCChHHHHHHHHHHHHHHhhcCchhhh
Confidence 467889999999999999999999986655444333
No 252
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=37.51 E-value=88 Score=18.38 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=28.2
Q ss_pred ccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechhh
Q 034552 29 SRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (91)
Q Consensus 29 ~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (91)
+|.-|+|.+++. .+|++.|.+-++ |..-....+.+|-+.++..+
T Consensus 124 ~R~yGiGAQIL~--------dLGV~~~rLLtn--~~~k~~~L~g~gleVv~~~~ 167 (191)
T TIGR00505 124 ERDFSLCADILE--------DLGVKKVRLLTN--NPKKIEILKKAGINIVERVP 167 (191)
T ss_pred ceehhHHHHHHH--------HcCCCEEEECCC--CHHHHHHHHhCCCEEEEEec
Confidence 555566555543 668898876554 55455666788887776553
No 253
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=37.39 E-value=1.1e+02 Score=19.37 Aligned_cols=55 Identities=9% Similarity=-0.104 Sum_probs=37.7
Q ss_pred eEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcC
Q 034552 20 VEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLG 74 (91)
Q Consensus 20 i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~G 74 (91)
=+.+.+||.|-.++==..+++.+.+-.+.-.+-....+.-.+......+|++++.
T Consensus 157 RglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L~ 211 (279)
T COG2961 157 RGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRALE 211 (279)
T ss_pred ceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHHh
Confidence 4567889999988866677776666444233444455666777788888887664
No 254
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=37.08 E-value=1.1e+02 Score=20.47 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=23.3
Q ss_pred hcCccEEEEEecCCcHHHHHHHHhcCceeechhh
Q 034552 49 NFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (91)
Q Consensus 49 ~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (91)
.+|++.|.+-+ .|+.-..-.+.+|.+.++..+
T Consensus 325 dLGV~~irLLT--Nnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 325 ALGIEKVRLLT--NNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HcCCCEEEECC--CCHHHHHHHHhCCCEEEEEec
Confidence 66888887655 366666777899998887654
No 255
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=36.35 E-value=1e+02 Score=20.08 Aligned_cols=54 Identities=9% Similarity=0.095 Sum_probs=33.8
Q ss_pred EeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCc
Q 034552 22 IMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75 (91)
Q Consensus 22 ~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf 75 (91)
.+.+++....-|+|+++.+.+.+..++....+.....+.+.-.+....+++.++
T Consensus 283 vvtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d~~~p~~~~le~~~~ 336 (356)
T PLN02683 283 LVTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGADVPMPYAANLERLAL 336 (356)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCCcCCCccHHHHHhhC
Confidence 456666666779999999999887652233444444443333444556677766
No 256
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=35.83 E-value=41 Score=17.33 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=14.1
Q ss_pred CcHHHHHHHH-hcCceeec
Q 034552 62 SNGASLRLFQ-KLGFEDIS 79 (91)
Q Consensus 62 ~n~~~~~~~~-~~Gf~~~~ 79 (91)
+=.+|.+||. .+||+...
T Consensus 12 D~~~a~~FY~~~lG~~~~~ 30 (120)
T cd09011 12 DIEKSKKFYEKVLGLKVVM 30 (120)
T ss_pred CHHHHHHHHHHhcCCEEee
Confidence 4578999998 59998753
No 257
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=35.25 E-value=31 Score=16.84 Aligned_cols=30 Identities=30% Similarity=0.493 Sum_probs=19.5
Q ss_pred cCccEEEEEecCCcHHHHHHHHhcCceeec
Q 034552 50 FGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (91)
Q Consensus 50 ~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (91)
..+..+.-.+..+.....+|.+++||.--.
T Consensus 35 ~si~elA~~~~vS~sti~Rf~kkLG~~gf~ 64 (77)
T PF01418_consen 35 MSISELAEKAGVSPSTIVRFCKKLGFSGFK 64 (77)
T ss_dssp --HHHHHHHCTS-HHHHHHHHHHCTTTCHH
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHhCCCCHH
Confidence 344444445666677889999999998543
No 258
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=35.12 E-value=1.8e+02 Score=22.38 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=42.0
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecC
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGE 61 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~ 61 (91)
++|++++.+.. .+...++.+--+|+. -+|+...|+-.++.+++ +.|++.+.+...+
T Consensus 432 i~af~s~~p~~---~~g~slDLMRr~pda-pnGvmE~L~~~l~~~~k-~~G~~~~sLg~AP 487 (1094)
T PRK02983 432 VVALLSFVPWG---RRGLSLDLMRRSPDA-PNGVIELMVAELALEAE-SLGITRISLNFAV 487 (1094)
T ss_pred EEEEEEEeeeC---CCCEEEEecccCCCC-CCCHHHHHHHHHHHHHH-HcCCCEEEechhh
Confidence 35666766643 234666666666765 58999999999999999 8999999987655
No 259
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=34.94 E-value=50 Score=16.06 Aligned_cols=17 Identities=18% Similarity=0.346 Sum_probs=13.5
Q ss_pred HHHHHHHHhcCceeech
Q 034552 64 GASLRLFQKLGFEDISY 80 (91)
Q Consensus 64 ~~~~~~~~~~Gf~~~~~ 80 (91)
....+..++.||..+..
T Consensus 10 ke~ik~Le~~Gf~~vrq 26 (66)
T COG1724 10 KEVIKALEKDGFQLVRQ 26 (66)
T ss_pred HHHHHHHHhCCcEEEEe
Confidence 45788999999998764
No 260
>PLN02540 methylenetetrahydrofolate reductase
Probab=34.40 E-value=1.7e+02 Score=20.72 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCcee
Q 034552 34 LAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (91)
Q Consensus 34 ~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~ 77 (91)
+|.++...+.+.+. +.|++.+...+...-.....+.+++|..+
T Consensus 245 ~Gieia~e~~~~L~-~~Gv~GiHfYTlN~e~~v~~ILe~lgl~~ 287 (565)
T PLN02540 245 YGIHLGTEMCKKIL-AHGIKGLHLYTLNLEKSALAILMNLGLID 287 (565)
T ss_pred HHHHHHHHHHHHHH-HcCCCEEEECccCChHHHHHHHHHcCCCC
Confidence 67777777777777 66899999999998899999999999754
No 261
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.26 E-value=1.1e+02 Score=18.63 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=32.2
Q ss_pred ccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHH
Q 034552 2 VGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 47 (91)
Q Consensus 2 VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~ 47 (91)
||.+.+.....+. ..+-|-+..-||..=..|.|+.+++.+...+.
T Consensus 166 vgSvAi~~L~~~~-~~gllafgS~D~~hf~~gmGT~fL~~la~vl~ 210 (218)
T COG3159 166 VGSVAIVPLGSQA-PLGLLAFGSRDPRHFQPGMGTLFLRHLALVLA 210 (218)
T ss_pred cceeEEEEccCCC-CceEEEecCCCccccCCCcchHHHHHHHHHHH
Confidence 5666665555332 55666666777887789999999999887665
No 262
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=34.24 E-value=71 Score=16.38 Aligned_cols=20 Identities=10% Similarity=0.242 Sum_probs=14.5
Q ss_pred CCcHHHHHHHHh----cCceeech
Q 034552 61 ESNGASLRLFQK----LGFEDISY 80 (91)
Q Consensus 61 ~~n~~~~~~~~~----~Gf~~~~~ 80 (91)
.+-.++.+||++ +||.....
T Consensus 9 ~d~~~s~~FY~~~f~~lg~~~~~~ 32 (123)
T cd07262 9 NDLERARAFYDAVLAPLGIKRVME 32 (123)
T ss_pred CcHHHHHHHHHHHHhhcCceEEee
Confidence 344678899987 59987654
No 263
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=34.07 E-value=1.3e+02 Score=19.14 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCc
Q 034552 34 LAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75 (91)
Q Consensus 34 ~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf 75 (91)
.|.++...+.+.+. +.|++.+...+...-....++.+.+|.
T Consensus 252 ~Gi~~a~e~i~~L~-~~gv~GvH~yt~n~~~~~~~il~~l~l 292 (296)
T PRK09432 252 VGASIAMDMVKILS-REGVKDFHFYTLNRAELTYAICHTLGV 292 (296)
T ss_pred HHHHHHHHHHHHHH-HCCCCEEEEecCCChHHHHHHHHHhCC
Confidence 56666666666666 668999999888887888889999886
No 264
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=33.64 E-value=45 Score=17.74 Aligned_cols=27 Identities=15% Similarity=0.130 Sum_probs=17.8
Q ss_pred cEEEEEecCCcHHHHHHHHh-cCceeech
Q 034552 53 HVFRAKIGESNGASLRLFQK-LGFEDISY 80 (91)
Q Consensus 53 ~~v~~~~~~~n~~~~~~~~~-~Gf~~~~~ 80 (91)
..+.+.|. +=..|.+||++ +||+....
T Consensus 5 ~hi~l~v~-dl~~s~~FY~~vlGl~~~~~ 32 (134)
T cd08360 5 GHVVLFVP-DVEAAEAFYRDRLGFRVSDR 32 (134)
T ss_pred eEEEEEcC-CHHHHHHHHHHhcCCEEEEE
Confidence 34444443 34688999965 89987654
No 265
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=33.24 E-value=1.2e+02 Score=21.30 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=25.1
Q ss_pred hcCccEEEEEecCCcHHHHHHHHhcCceeechhhh
Q 034552 49 NFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEI 83 (91)
Q Consensus 49 ~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~~ 83 (91)
..|++.|.+-+ .|+.-..-.+.+|.+.+++.+.
T Consensus 348 dLGI~kIrLLT--NNP~Ki~~L~~~GIeVv~rvpl 380 (555)
T PRK09319 348 DLGIKRLRLIT--NNPRKIAGLGGYGLEVVDRVPL 380 (555)
T ss_pred HcCCCEEEECC--CCHHHHHHHHhCCCEEEEEecc
Confidence 67889887655 4777777788999998877653
No 266
>PRK15447 putative protease; Provisional
Probab=33.18 E-value=1.3e+02 Score=19.04 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=17.6
Q ss_pred EEecCCcHHHHHHHHhcCceee
Q 034552 57 AKIGESNGASLRLFQKLGFEDI 78 (91)
Q Consensus 57 ~~~~~~n~~~~~~~~~~Gf~~~ 78 (91)
...+..|..+.++|.++|...+
T Consensus 114 ~~lni~N~~a~~~l~~~G~~rv 135 (301)
T PRK15447 114 PALNCYNAATLALLARLGATRW 135 (301)
T ss_pred cccccCCHHHHHHHHHcCCcEE
Confidence 4466789999999999998643
No 267
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=32.82 E-value=48 Score=16.88 Aligned_cols=19 Identities=11% Similarity=0.252 Sum_probs=14.2
Q ss_pred CcHHHHHHHH-hcCceeech
Q 034552 62 SNGASLRLFQ-KLGFEDISY 80 (91)
Q Consensus 62 ~n~~~~~~~~-~~Gf~~~~~ 80 (91)
+=.+|..||. .+||+....
T Consensus 11 D~~~s~~FY~~~lG~~~~~~ 30 (119)
T cd08359 11 DLAETADFYVRHFGFTVVFD 30 (119)
T ss_pred CHHHHHHHHHHhhCcEEEec
Confidence 3467899996 599987754
No 268
>PHA03005 sulfhydryl oxidase; Provisional
Probab=32.48 E-value=38 Score=17.66 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=12.2
Q ss_pred CccccCcchHHHHHHHH
Q 034552 26 EPKSRGKGLAKDAVLMM 42 (91)
Q Consensus 26 ~~~~r~~G~g~~l~~~~ 42 (91)
+|+|+|+++-+-+.-.+
T Consensus 2 dPk~WGra~W~vIFivi 18 (96)
T PHA03005 2 NPKYWGRAIWTVIFIVI 18 (96)
T ss_pred CcchhhhhHHHHHHHHH
Confidence 58888888877666433
No 269
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=32.48 E-value=49 Score=16.64 Aligned_cols=19 Identities=26% Similarity=0.336 Sum_probs=14.4
Q ss_pred CcHHHHHHHHh-cCceeech
Q 034552 62 SNGASLRLFQK-LGFEDISY 80 (91)
Q Consensus 62 ~n~~~~~~~~~-~Gf~~~~~ 80 (91)
+=.++.+||.+ +||+....
T Consensus 8 d~~~s~~Fy~~~lg~~~~~~ 27 (113)
T cd08345 8 DLNKSIAFYRDILGAELIYS 27 (113)
T ss_pred CHHHHHHHHHHhcCCeeeec
Confidence 34688899986 89987654
No 270
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=32.43 E-value=1.3e+02 Score=18.71 Aligned_cols=54 Identities=9% Similarity=-0.116 Sum_probs=30.3
Q ss_pred eEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhc
Q 034552 20 VEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 73 (91)
Q Consensus 20 i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~ 73 (91)
=+.+.+||.|-.+.=-..+...+.+-.++-.....+.+.-........+|++++
T Consensus 126 RglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l 179 (245)
T PF04378_consen 126 RGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRAL 179 (245)
T ss_dssp -EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHH
Confidence 356788999988876667777766655533333456666666676777776544
No 271
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=32.12 E-value=86 Score=16.70 Aligned_cols=52 Identities=15% Similarity=0.089 Sum_probs=36.9
Q ss_pred ccccCcchHHHHHHHHHHHHHhhcC-ccEEEEEecCCcHHHHHHHHhcCceee
Q 034552 27 PKSRGKGLAKDAVLMMMAYAVENFG-IHVFRAKIGESNGASLRLFQKLGFEDI 78 (91)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~-~~~v~~~~~~~n~~~~~~~~~~Gf~~~ 78 (91)
+.-...|+...+++.+.+++..... +...++.+.+..+.|..+.+++|=+..
T Consensus 26 KHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~He 78 (105)
T PF11009_consen 26 KHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHE 78 (105)
T ss_dssp EE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----
T ss_pred EeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcC
Confidence 4445578999999999998884443 888899999999999999999987654
No 272
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=31.93 E-value=1.2e+02 Score=19.22 Aligned_cols=60 Identities=7% Similarity=-0.133 Sum_probs=31.8
Q ss_pred eeEEeeeCccccCcc-h----HHHHHHHHHHHHHhhc--CccEEEEEecCCcHHHHHHHHhcCceeechh
Q 034552 19 EVEIMIAEPKSRGKG-L----AKDAVLMMMAYAVENF--GIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (91)
Q Consensus 19 ~i~~~~v~~~~r~~G-~----g~~l~~~~~~~~~~~~--~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~ 81 (91)
..+.++.+|.|-.+. . ...+...+++.+.+.. |-..+. +.+.+.....+.+..|| ..+..
T Consensus 248 ~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~--~~~~~~~~~~~~~~~g~-i~~~~ 314 (329)
T TIGR01177 248 SVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVY--AVPTRIDLESLAEDAFR-VVKRF 314 (329)
T ss_pred CCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEE--EEcCCCCHHHHHhhcCc-chhee
Confidence 467788888875431 1 1133344444443222 322233 33344456678999999 66544
No 273
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=31.54 E-value=50 Score=20.48 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=26.7
Q ss_pred ccccCcchHHHHHHHHHHHHHhhcCccEEEEEec
Q 034552 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIG 60 (91)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~ 60 (91)
|...|+-.|...+..++.+|. +.|++.+.+.+.
T Consensus 35 ~~~~GH~~G~~~~~~iv~~c~-~~gI~~lTvYaF 67 (253)
T PRK14836 35 PRVEGHRAGVRAVRRTIEFCL-EKGIEMLTLFAF 67 (253)
T ss_pred chhhhHHHHHHHHHHHHHHHH-HcCCCEEehhHh
Confidence 334566678899999999999 899999988753
No 274
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=31.49 E-value=82 Score=16.25 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=15.8
Q ss_pred EEEEEecCCcHHHHHHHHh-cCceeech
Q 034552 54 VFRAKIGESNGASLRLFQK-LGFEDISY 80 (91)
Q Consensus 54 ~v~~~~~~~n~~~~~~~~~-~Gf~~~~~ 80 (91)
.+.+.+. +=..+.+||++ +||+....
T Consensus 4 hv~l~v~-d~~~~~~FY~~vLG~~~~~~ 30 (121)
T cd07244 4 HITLAVS-DLERSVAFYVDLLGFKLHVR 30 (121)
T ss_pred eEEEEEC-CHHHHHHHHHHhcCCEEEEe
Confidence 3444443 34578888864 88887653
No 275
>PHA02324 hypothetical protein
Probab=31.16 E-value=24 Score=15.51 Aligned_cols=7 Identities=43% Similarity=0.776 Sum_probs=5.1
Q ss_pred ccccCcc
Q 034552 27 PKSRGKG 33 (91)
Q Consensus 27 ~~~r~~G 33 (91)
..|||||
T Consensus 40 K~YRGQG 46 (47)
T PHA02324 40 KPYRGQG 46 (47)
T ss_pred CcccCCC
Confidence 5688876
No 276
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.06 E-value=1.5e+02 Score=19.10 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=26.9
Q ss_pred ccCcchHHHHHHHHHHHHHhhcCccEEEEEecCC-cHHHHHHHHhcC
Q 034552 29 SRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES-NGASLRLFQKLG 74 (91)
Q Consensus 29 ~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~-n~~~~~~~~~~G 74 (91)
=-|.|+|+++..++. ++|.+-+.+.+++. +....+-.++.|
T Consensus 45 Ggg~GlGr~ialefa-----~rg~~~vl~Din~~~~~etv~~~~~~g 86 (300)
T KOG1201|consen 45 GGGSGLGRLIALEFA-----KRGAKLVLWDINKQGNEETVKEIRKIG 86 (300)
T ss_pred CCCchHHHHHHHHHH-----HhCCeEEEEeccccchHHHHHHHHhcC
Confidence 457899998876653 45666666665554 566666666665
No 277
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=31.03 E-value=1.4e+02 Score=20.81 Aligned_cols=46 Identities=11% Similarity=0.170 Sum_probs=36.1
Q ss_pred cchHHHHHHHHHHHHHhhcC-ccEEEEEecCCcHHHHHHHHhcCceee
Q 034552 32 KGLAKDAVLMMMAYAVENFG-IHVFRAKIGESNGASLRLFQKLGFEDI 78 (91)
Q Consensus 32 ~G~g~~l~~~~~~~~~~~~~-~~~v~~~~~~~n~~~~~~~~~~Gf~~~ 78 (91)
+.+|.+++-++.+.+. ..| ++.+...+..-..+...+.+++|.-..
T Consensus 255 r~~Gvel~vemc~kll-~~g~v~~lHfyTlNlEksv~~IL~~lgll~~ 301 (590)
T KOG0564|consen 255 RNYGVELIVEMCRKLL-DSGVVPGLHFYTLNLEKSVAAILKRLGLLDE 301 (590)
T ss_pred HHHhHHHHHHHHHHHH-hcCccceeEEEEecHHHHHHHHHHhcCcccc
Confidence 4567777777777666 445 888888898888999999999998655
No 278
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=30.46 E-value=90 Score=16.40 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=13.8
Q ss_pred CcHHHHHHHHh-cCceeech
Q 034552 62 SNGASLRLFQK-LGFEDISY 80 (91)
Q Consensus 62 ~n~~~~~~~~~-~Gf~~~~~ 80 (91)
+=.++.+||.+ +||+....
T Consensus 9 dl~~a~~Fy~~~lG~~~~~~ 28 (131)
T cd08343 9 DVAATAAFYTEVLGFRVSDR 28 (131)
T ss_pred CHHHHHHHHHhcCCCEEEEE
Confidence 34578889976 89987543
No 279
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=30.40 E-value=1.6e+02 Score=19.26 Aligned_cols=24 Identities=13% Similarity=0.405 Sum_probs=19.3
Q ss_pred EEEEecCCcHHHHHHHHhcCceee
Q 034552 55 FRAKIGESNGASLRLFQKLGFEDI 78 (91)
Q Consensus 55 v~~~~~~~n~~~~~~~~~~Gf~~~ 78 (91)
+...+...|....+||.++|.+.+
T Consensus 118 ~S~q~~v~N~~~~~f~~~~G~~rv 141 (347)
T COG0826 118 VSTQANVTNAETAKFWKELGAKRV 141 (347)
T ss_pred EeeeEecCCHHHHHHHHHcCCEEE
Confidence 445578889999999999997754
No 280
>PLN02300 lactoylglutathione lyase
Probab=30.36 E-value=54 Score=20.25 Aligned_cols=29 Identities=10% Similarity=0.350 Sum_probs=19.4
Q ss_pred CccEEEEEecCCcHHHHHHHHh-cCceeech
Q 034552 51 GIHVFRAKIGESNGASLRLFQK-LGFEDISY 80 (91)
Q Consensus 51 ~~~~v~~~~~~~n~~~~~~~~~-~Gf~~~~~ 80 (91)
.+..+.+.|.. =..|.+||++ +||+....
T Consensus 24 ~l~Hv~l~V~D-le~s~~FY~~vLG~~~~~~ 53 (286)
T PLN02300 24 RMLHVVYRVGD-LDRTIKFYTECLGMKLLRK 53 (286)
T ss_pred eEEEEEEEeCC-HHHHHHHHHHhcCCEEEEe
Confidence 44555555544 4589999975 89988653
No 281
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=30.15 E-value=77 Score=15.50 Aligned_cols=39 Identities=15% Similarity=0.097 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCcee
Q 034552 35 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (91)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~ 77 (91)
|-.++..+.+.+. ..|.+ +.+...+....++++..|+..
T Consensus 55 g~~~L~~l~~~~~-~~g~~---v~i~~~~~~~~~~l~~~gl~~ 93 (99)
T cd07043 55 GLGVLLGAYKRAR-AAGGR---LVLVNVSPAVRRVLELTGLDR 93 (99)
T ss_pred hHHHHHHHHHHHH-HcCCe---EEEEcCCHHHHHHHHHhCcce
Confidence 3444555555555 44544 333344678899999998764
No 282
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=29.97 E-value=87 Score=21.70 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=27.9
Q ss_pred hcCccEEEEEecCCcHHHHHHHHhcCceeec
Q 034552 49 NFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (91)
Q Consensus 49 ~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (91)
.+|-+.|...|-+.|+.-+.|.++.||-...
T Consensus 331 HlGGDEV~~~CW~s~~~Iq~fM~~kGfg~~~ 361 (542)
T KOG2499|consen 331 HLGGDEVSTPCWKSNPEIQDFMRKKGFGLDT 361 (542)
T ss_pred ecCCceeecccccCChHHHHHHHhCCCCchH
Confidence 4688999999999999999999999998654
No 283
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=29.89 E-value=2e+02 Score=20.21 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechh
Q 034552 35 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (91)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~ 81 (91)
-..+++.+.+-+. ..|...-.+.....+.....++..+||+.....
T Consensus 480 V~~~i~~vi~~a~-~~g~~v~vCGe~a~~p~~~~~l~~~G~~~lsv~ 525 (565)
T TIGR01417 480 VLRLIKLVIDAAK-AEGIWVGMCGEMAGDERAIPLLLGLGLRELSMS 525 (565)
T ss_pred HHHHHHHHHHHHH-HcCCeEEEeCCcCCCHHHHHHHHHCCCCEEEEC
Confidence 3457777777777 567665555567889999999999999987543
No 284
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=29.77 E-value=1.5e+02 Score=20.30 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=23.4
Q ss_pred hcCccEEEEEecCCcHHHHHHHHhcCceeechhh
Q 034552 49 NFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (91)
Q Consensus 49 ~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (91)
.+|++.|.+-++ |+.-..-.+.+|.+.++..+
T Consensus 378 dLGI~~irLLTN--Np~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 378 DLGVRTMRLMTN--NPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HcCCCEEEECCC--CHHHHHHHhhCCCEEEEEec
Confidence 678888876554 66666677899998876664
No 285
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=29.57 E-value=1.5e+02 Score=18.78 Aligned_cols=49 Identities=27% Similarity=0.220 Sum_probs=32.9
Q ss_pred cchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 32 KGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 32 ~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
-|.|+--+.++.....++.|.+.+.+++++...-+--|=.++|-.+...
T Consensus 10 GGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d~l~~~~~~~~~~v 58 (305)
T PF02374_consen 10 GGVGKTTVAAALALALARRGKRTLLVSTDPAHSLSDVLGQKLGGEPTKV 58 (305)
T ss_dssp TTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHHHHTS--BSS-EEE
T ss_pred CCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHHHhCCcCCCCCeEe
Confidence 3788888887777666678999999999988766555555566655543
No 286
>TIGR01083 nth endonuclease III. This equivalog model identifes nth members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=29.54 E-value=1.2e+02 Score=17.63 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=28.7
Q ss_pred cchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceee
Q 034552 32 KGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDI 78 (91)
Q Consensus 32 ~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~ 78 (91)
+|+|.+....++.+++ .. .. ..-+....++..++|+...
T Consensus 112 ~GIG~ktA~~ill~~~-~~--~~-----~~vD~~v~Ri~~r~g~~~~ 150 (191)
T TIGR01083 112 PGVGRKTANVVLNVAF-GI--PA-----IAVDTHVFRVSNRLGLSKG 150 (191)
T ss_pred CCCcHHHHHHHHHHHc-CC--Cc-----cccchhHHHHHHHcCCCCC
Confidence 5899999999998877 32 21 2335678899999998643
No 287
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=29.48 E-value=97 Score=16.44 Aligned_cols=52 Identities=19% Similarity=0.226 Sum_probs=36.7
Q ss_pred cCcchHH-HHHHHHHHHHHhhcCccEEEEEec---CCcHHHHHHHHhcCceeechhh
Q 034552 30 RGKGLAK-DAVLMMMAYAVENFGIHVFRAKIG---ESNGASLRLFQKLGFEDISYSE 82 (91)
Q Consensus 30 r~~G~g~-~l~~~~~~~~~~~~~~~~v~~~~~---~~n~~~~~~~~~~Gf~~~~~~~ 82 (91)
+..-++. .+.+.+.+.+. +.|++.+...+. .....+++.+.+.|++.....+
T Consensus 39 k~t~~Aa~~~a~~~~~~~~-~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~I~D 94 (108)
T TIGR03632 39 KSTPYAAQLAAEDAAKKAK-EFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTSIKD 94 (108)
T ss_pred cCCHHHHHHHHHHHHHHHH-HcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEE
Confidence 3334543 55566677777 789999888864 4468888888999998766543
No 288
>PF01585 G-patch: G-patch domain; InterPro: IPR000467 The D111/G-patch domain [] is a short conserved region of about 40 amino acids which occurs in a number of putative RNA-binding proteins, including tumor suppressor and DNA-damage-repair proteins, suggesting that this domain may have an RNA binding function. This domain has seven highly conserved glycines. A multiple alignment of a small subset of D111/G-patch domains is shown in Fig. 2b of [].; GO: 0003676 nucleic acid binding, 0005622 intracellular
Probab=29.37 E-value=44 Score=14.59 Aligned_cols=13 Identities=23% Similarity=0.721 Sum_probs=10.5
Q ss_pred HHHHHHHhcCcee
Q 034552 65 ASLRLFQKLGFED 77 (91)
Q Consensus 65 ~~~~~~~~~Gf~~ 77 (91)
...++.+++||++
T Consensus 4 ~g~~lm~kmGw~~ 16 (45)
T PF01585_consen 4 IGFKLMKKMGWKP 16 (45)
T ss_pred HHHHHHHHCCCCC
Confidence 5677899999985
No 289
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=28.79 E-value=1.5e+02 Score=18.53 Aligned_cols=61 Identities=15% Similarity=0.211 Sum_probs=40.6
Q ss_pred ceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCc---HHHHHHHHhcCceeechhh
Q 034552 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESN---GASLRLFQKLGFEDISYSE 82 (91)
Q Consensus 17 ~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n---~~~~~~~~~~Gf~~~~~~~ 82 (91)
.+.+-.++++|++++-..+.++-+.. . +.+++++.+-.+.-. ..........|....+..+
T Consensus 155 ~vD~vivVvDpS~~sl~taeri~~L~----~-elg~k~i~~V~NKv~e~e~~~~~~~~~~~~~vlg~iP 218 (255)
T COG3640 155 GVDLVIVVVDPSYKSLRTAERIKELA----E-ELGIKRIFVVLNKVDEEEELLRELAEELGLEVLGVIP 218 (255)
T ss_pred CCCEEEEEeCCcHHHHHHHHHHHHHH----H-HhCCceEEEEEeeccchhHHHHhhhhccCCeEEEEcc
Confidence 45677788999999887776665544 3 566777777665554 3355666677776666554
No 290
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=28.49 E-value=1.1e+02 Score=18.04 Aligned_cols=25 Identities=20% Similarity=0.485 Sum_probs=19.1
Q ss_pred eeEEeeeCccccCcchHHHHHHHHHH
Q 034552 19 EVEIMIAEPKSRGKGLAKDAVLMMMA 44 (91)
Q Consensus 19 ~i~~~~v~~~~r~~G~g~~l~~~~~~ 44 (91)
..+.++.+|.|+ .|+...+++.+..
T Consensus 121 ~fDlV~~DPPy~-~g~~~~~l~~l~~ 145 (199)
T PRK10909 121 PHNVVFVDPPFR-KGLLEETINLLED 145 (199)
T ss_pred CceEEEECCCCC-CChHHHHHHHHHH
Confidence 368889999997 5777777776655
No 291
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=28.47 E-value=90 Score=15.76 Aligned_cols=19 Identities=16% Similarity=0.504 Sum_probs=14.6
Q ss_pred CcHHHHHHHH-hcCceeech
Q 034552 62 SNGASLRLFQ-KLGFEDISY 80 (91)
Q Consensus 62 ~n~~~~~~~~-~~Gf~~~~~ 80 (91)
+=..+.+||. .+||+....
T Consensus 11 d~~~a~~FY~~~lG~~~~~~ 30 (122)
T cd07246 11 DAAAAIDFYKKAFGAEELER 30 (122)
T ss_pred CHHHHHHHHHHhhCCEEEEE
Confidence 4568899997 589997654
No 292
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=28.30 E-value=89 Score=20.04 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=27.7
Q ss_pred EEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEE
Q 034552 21 EIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFR 56 (91)
Q Consensus 21 ~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~ 56 (91)
..+.|+..|+..|+|.++...+.+.+++.+..+..+
T Consensus 290 ~lvtVe~~~p~~gigaei~A~i~E~~fdyLdAPv~r 325 (359)
T KOG0524|consen 290 RLVTVEEGWPQFGIGAEICAQIMENAFDYLDAPVQR 325 (359)
T ss_pred eEEEEeccccccchhHHHHHHHHHHHHhhhcchhhh
Confidence 456778899999999999999999888555444333
No 293
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=28.16 E-value=1.3e+02 Score=17.45 Aligned_cols=43 Identities=12% Similarity=0.082 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhcCccEEEEEecCCcHHHH---HHHHhcCceee
Q 034552 35 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASL---RLFQKLGFEDI 78 (91)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~---~~~~~~Gf~~~ 78 (91)
+..+...+++.+. +.+.+-+.-++...-.... +.+++.||+..
T Consensus 78 a~~~~~~~~~~a~-~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~ 123 (199)
T PF06414_consen 78 ASRLAEKLIEYAI-ENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVE 123 (199)
T ss_dssp HHHHHHHHHHHHH-HCT--EEEE--TTSSHHHHHHHHHHHCTT-EEE
T ss_pred HHHHHHHHHHHHH-HcCCCEEEecCCCChhHHHHHHHHHHcCCceEE
Confidence 5567788888888 6778777766666544443 56678899853
No 294
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=28.09 E-value=59 Score=19.30 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=19.6
Q ss_pred CCcHHHHHHHHhcCceeechhhhhh
Q 034552 61 ESNGASLRLFQKLGFEDISYSEIFK 85 (91)
Q Consensus 61 ~~n~~~~~~~~~~Gf~~~~~~~~~~ 85 (91)
+...++.+.+.+.||+.+|....|.
T Consensus 141 ~~S~~mskaLKkrGf~fvGpTt~ya 165 (188)
T COG2818 141 ELSDAMSKALKKRGFKFVGPTTVYA 165 (188)
T ss_pred hhHHHHHHHHHHccCeecCcHHHHH
Confidence 3456788899999999999877663
No 295
>PF06399 GFRP: GTP cyclohydrolase I feedback regulatory protein (GFRP); InterPro: IPR009112 GTP cyclohydrolase I feedback regulatory protein (GFRP) in mammals helps regulate the biosynthesis of tetrahydrobiopterin through the feedback inhibition of the rate-limiting enzyme GTP cyclohydrolase I (GTPCHI). Tetrahydrobiopterin is the cofactor required for the hydroxylation of aromatic amino acids. The crystal structure of GFRP reveals that the protein forms a homopentamer []. In the presence of phenylalanine, the stimulatory complex consists of a GTPCHI decamer sandwiched by two GFRP pentamers, which is thought to enhance GTPCHI activity by locking the enzyme in the active state []. The structure of GFRP consists of two alpha/beta layers arranged beta(2)-alpha-beta(2)-alpha-beta(2), with antiparallel beta-sheets in the order 342165.; GO: 0009890 negative regulation of biosynthetic process; PDB: 1IS7_N 1IS8_Q 1WPL_T 1JG5_C.
Probab=27.98 E-value=55 Score=16.62 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 37 DAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 37 ~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
++++.+-.......|-+.-...+...-.....-.+..||+.+..
T Consensus 26 ~LM~~LgA~~~~~lgn~f~ey~~~~~Pr~VLnKLE~~G~kVvsm 69 (83)
T PF06399_consen 26 ELMAYLGAKKRTPLGNNFKEYHVDDPPRVVLNKLEKMGYKVVSM 69 (83)
T ss_dssp HHHHHHT-EEE--TT-SS-EEEESS-HHHHHHHHHHTTEEEEEE
T ss_pred HHHHHhcCceeccccCcceEEEcCCChHHHHHHHHhcCeEEEEE
Confidence 55665554432234444445556666666778889999998764
No 296
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=27.79 E-value=1.5e+02 Score=18.25 Aligned_cols=40 Identities=13% Similarity=0.035 Sum_probs=28.7
Q ss_pred cCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHH
Q 034552 30 RGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRL 69 (91)
Q Consensus 30 r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~ 69 (91)
.+-|.|+-.+...+.......|.+.+...+++.|.....+
T Consensus 10 ~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~~ 49 (241)
T PRK13886 10 GKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEGY 49 (241)
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhhH
Confidence 3458888777777666555778888888898888654444
No 297
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=27.49 E-value=97 Score=15.80 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=12.7
Q ss_pred cHHHHHHHH-hcCceeech
Q 034552 63 NGASLRLFQ-KLGFEDISY 80 (91)
Q Consensus 63 n~~~~~~~~-~~Gf~~~~~ 80 (91)
-..+.+||. .+||+....
T Consensus 12 ~~~a~~FY~~~lG~~~~~~ 30 (120)
T cd07254 12 LEASIAFYSKLFGVEPTKV 30 (120)
T ss_pred HHHHHHHHHHHhCCeEecc
Confidence 367888885 558877554
No 298
>CHL00041 rps11 ribosomal protein S11
Probab=27.40 E-value=1.1e+02 Score=16.48 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhhcCccEEEEEe---cCCcHHHHHHHHhcCceeechhh
Q 034552 35 AKDAVLMMMAYAVENFGIHVFRAKI---GESNGASLRLFQKLGFEDISYSE 82 (91)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~v~~~~---~~~n~~~~~~~~~~Gf~~~~~~~ 82 (91)
+..+.+.+.+.+. +.|++.+...+ ......+++.+++.|.+.....+
T Consensus 58 a~~~a~~~~~~~~-~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~~I~D 107 (116)
T CHL00041 58 AQTAAENAIRTVI-DQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLSSIRD 107 (116)
T ss_pred HHHHHHHHHHHHH-HcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEE
Confidence 3566677778887 78898888876 34567888888899998776544
No 299
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=26.98 E-value=1.1e+02 Score=16.24 Aligned_cols=47 Identities=28% Similarity=0.396 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhhcCccEEEEEecC---CcHHHHHHHHhcCceeechhh
Q 034552 35 AKDAVLMMMAYAVENFGIHVFRAKIGE---SNGASLRLFQKLGFEDISYSE 82 (91)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~v~~~~~~---~n~~~~~~~~~~Gf~~~~~~~ 82 (91)
+..+.+.+.+.+. +.|++.+...+.- ...++++.+.+.|++.....+
T Consensus 45 a~~~a~~~~~~~~-~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~I~D 94 (110)
T PF00411_consen 45 AQQAAEKIAKKAK-ELGIKTVRVKIKGFGPGREAALKALKKSGLKIVSITD 94 (110)
T ss_dssp HHHHHHHHHHHHH-CTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEEEEE
T ss_pred HHHHHHHHHHHHH-HcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEEEEe
Confidence 3466677777887 7899988887654 346788888888988765443
No 300
>PF13289 SIR2_2: SIR2-like domain
Probab=26.96 E-value=1.1e+02 Score=16.26 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=13.4
Q ss_pred EEEEEecCCc-HHHHHHHHhcCcee
Q 034552 54 VFRAKIGESN-GASLRLFQKLGFED 77 (91)
Q Consensus 54 ~v~~~~~~~n-~~~~~~~~~~Gf~~ 77 (91)
.+++.+...+ .....++++.|.++
T Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~i~~ 142 (143)
T PF13289_consen 118 RHYIVIPDPDDENEREFLEKYGIEV 142 (143)
T ss_pred cEEEEEcCCchHHHHHHHHHcCCEE
Confidence 3444444444 66667777777654
No 301
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=26.95 E-value=2.7e+02 Score=20.74 Aligned_cols=65 Identities=12% Similarity=0.067 Sum_probs=48.5
Q ss_pred CceeeEEeeeCcccc--CcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechh
Q 034552 16 ELAEVEIMIAEPKSR--GKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (91)
Q Consensus 16 ~~~~i~~~~v~~~~r--~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~ 81 (91)
+...+.-+.-+++.- |++....++..-+..++ +.+++.++++-.+.++.-..+..++|+-.+.+-
T Consensus 298 kpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk-~~n~N~vRtsHyP~~~~~ydLcDelGllV~~Ea 364 (808)
T COG3250 298 KPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMK-EANMNSVRTSHYPNSEEFYDLCDELGLLVIDEA 364 (808)
T ss_pred eEEEEeeeecccCCCccccccCHHHHHHHHHHHH-HcCCCEEEecCCCCCHHHHHHHHHhCcEEEEec
Confidence 345555555555554 44555677888888888 899999999988888888888889999877654
No 302
>PRK07758 hypothetical protein; Provisional
Probab=26.87 E-value=73 Score=16.71 Aligned_cols=20 Identities=10% Similarity=0.197 Sum_probs=14.4
Q ss_pred cchHHHHHHHHHHHHHhhcCc
Q 034552 32 KGLAKDAVLMMMAYAVENFGI 52 (91)
Q Consensus 32 ~G~g~~l~~~~~~~~~~~~~~ 52 (91)
+|+|.+.++.+.+-+. +.|.
T Consensus 73 knlGkKSL~EIkekL~-E~GL 92 (95)
T PRK07758 73 HGMGPASLPKLRKALE-ESGL 92 (95)
T ss_pred cCCCHHHHHHHHHHHH-HcCC
Confidence 5778888888877776 5553
No 303
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.84 E-value=80 Score=19.90 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=18.0
Q ss_pred HHHHHHHhcCceeechhhhhhhh
Q 034552 65 ASLRLFQKLGFEDISYSEIFKEA 87 (91)
Q Consensus 65 ~~~~~~~~~Gf~~~~~~~~~~~~ 87 (91)
..+.++++.||+..+..+.++++
T Consensus 114 ~vi~~~E~~GfKvigahei~~~l 136 (279)
T COG3494 114 AVIDFIESRGFKVIGAHEIVPGL 136 (279)
T ss_pred HHHHHHHhcCcEEecHhhhhhhh
Confidence 45678899999999888777654
No 304
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=26.81 E-value=1.1e+02 Score=16.34 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=16.6
Q ss_pred cchHHHHHHHHHHHHHhhcCccEE
Q 034552 32 KGLAKDAVLMMMAYAVENFGIHVF 55 (91)
Q Consensus 32 ~G~g~~l~~~~~~~~~~~~~~~~v 55 (91)
-++...+++.+.+.++ +.+.++|
T Consensus 4 ~sia~~iv~~v~~~a~-~~~~~~V 26 (115)
T TIGR00100 4 LSLAEAMLEIVEEQAE-KHQAKKV 26 (115)
T ss_pred HHHHHHHHHHHHHHHH-HhCCCeE
Confidence 3678889999988887 5554443
No 305
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=26.63 E-value=2.3e+02 Score=19.93 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=39.0
Q ss_pred ccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecC
Q 034552 2 VGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGE 61 (91)
Q Consensus 2 VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~ 61 (91)
|++.++.+... .....++..=-+|+.- +|....|+..++.+++ +.|++++.+...+
T Consensus 405 vaFa~l~~~~~--~~~~SlDlMR~sp~ap-~g~mdfLf~~li~~aK-e~G~~~fsLgmAp 460 (538)
T COG2898 405 VAFANLMPTGG--KEGYSLDLMRRSPDAP-NGTMDFLFSELILWAK-EEGYQRFSLGMAP 460 (538)
T ss_pred EEEEeecccCC--cceeEEEeeecCCCCC-chHHHHHHHHHHHHHH-HcCCeEEecCCcc
Confidence 45555554332 2345555555556655 6899999999999999 8999999876544
No 306
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=26.26 E-value=55 Score=19.26 Aligned_cols=28 Identities=14% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEEEecCCcHHHHHHHHhcCceeechhhh
Q 034552 55 FRAKIGESNGASLRLFQKLGFEDISYSEI 83 (91)
Q Consensus 55 v~~~~~~~n~~~~~~~~~~Gf~~~~~~~~ 83 (91)
+...+. +-..+..++.++||.++..+..
T Consensus 81 ~E~~v~-D~~~~~~il~~LGF~~~~~VkK 108 (178)
T COG1437 81 IEIEVS-DVEKALEILKRLGFKEVAVVKK 108 (178)
T ss_pred EEEEeC-CHHHHHHHHHHcCCceeeEEEE
Confidence 344444 3457888999999998876643
No 307
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=26.01 E-value=1.2e+02 Score=16.25 Aligned_cols=28 Identities=14% Similarity=0.212 Sum_probs=17.7
Q ss_pred ccEEEEEecCCcHHHHHHHH-hcCceeech
Q 034552 52 IHVFRAKIGESNGASLRLFQ-KLGFEDISY 80 (91)
Q Consensus 52 ~~~v~~~~~~~n~~~~~~~~-~~Gf~~~~~ 80 (91)
+..+.+.+.. =.++.+||. .+||+....
T Consensus 5 i~hi~L~v~D-l~~s~~FY~~~lG~~~~~~ 33 (139)
T PRK04101 5 INHICFSVSN-LEKSIEFYEKVLGAKLLVK 33 (139)
T ss_pred EEEEEEEecC-HHHHHHHHHhccCCEEEee
Confidence 4445554443 357888995 689887643
No 308
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=25.94 E-value=2e+02 Score=19.31 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=22.4
Q ss_pred hcCccEEEEEecCCcHHHHHHHHhcCceeechhh
Q 034552 49 NFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (91)
Q Consensus 49 ~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (91)
.+|+++|.+-++ |+.=..-.+.+|.+.++..+
T Consensus 344 ~LGv~~irLLTn--np~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 344 DLGVRSMRLLTN--NPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HcCCCEEEECCC--CHHHHHHHhhCCCEEEEEec
Confidence 678888876553 65555667788888876654
No 309
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=25.80 E-value=1.2e+02 Score=16.13 Aligned_cols=25 Identities=4% Similarity=0.107 Sum_probs=15.5
Q ss_pred EEEEecCCcHHHHHHHHh-cCceeech
Q 034552 55 FRAKIGESNGASLRLFQK-LGFEDISY 80 (91)
Q Consensus 55 v~~~~~~~n~~~~~~~~~-~Gf~~~~~ 80 (91)
+.+.|. +-.+++.||.+ +||+....
T Consensus 4 V~l~V~-Dl~~a~~FY~~~LG~~~~~~ 29 (131)
T cd08363 4 MTFSVS-NLDKSISFYKHVFMEKLLVL 29 (131)
T ss_pred EEEEEC-CHHHHHHHHHHhhCCEEecc
Confidence 344443 34577888875 78887543
No 310
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.71 E-value=1.3e+02 Score=18.51 Aligned_cols=58 Identities=17% Similarity=0.196 Sum_probs=36.4
Q ss_pred eeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecC-CcHHHHHHHHhcCcee
Q 034552 18 AEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGE-SNGASLRLFQKLGFED 77 (91)
Q Consensus 18 ~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~-~n~~~~~~~~~~Gf~~ 77 (91)
.....+++ |...+.|+-+++-+...+... +.-.....++..+ .|..-.+|.+++|-=.
T Consensus 79 ~~~~alIv-p~~~~~g~rkqL~~~~~~~g~-e~~~p~p~C~Le~~~~p~i~~F~e~FG~P~ 137 (224)
T COG1810 79 GGVKALIV-PAEPPEGLRKQLKEFCEELGV-EFEAPEPFCSLEPNENPHIDEFAERFGKPE 137 (224)
T ss_pred CCccEEEE-ecCCChhHHHHHHHHhhhcce-eeecCCccccCCCCCChHHHHHHHHcCCce
Confidence 34566777 888888887777776654443 3333334444333 3678888999987543
No 311
>PLN02458 transferase, transferring glycosyl groups
Probab=25.64 E-value=1.2e+02 Score=19.84 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhc
Q 034552 37 DAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 73 (91)
Q Consensus 37 ~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~ 73 (91)
.--+.++.++. +.....|.-..+++|.-+.++|+.+
T Consensus 188 ~QRN~AL~~IR-~h~l~GVVyFADDdNtYsl~LFeEm 223 (346)
T PLN02458 188 HQRNLALRHIE-HHKLSGIVHFAGLSNVYDLDFFDEI 223 (346)
T ss_pred HHHHHHHHHHH-hcCcCceEEEccCCCcccHHHHHHH
Confidence 33477788887 5567888888999999999999873
No 312
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=25.49 E-value=68 Score=16.21 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=13.9
Q ss_pred CcHHHHHHHHhc-Cceeech
Q 034552 62 SNGASLRLFQKL-GFEDISY 80 (91)
Q Consensus 62 ~n~~~~~~~~~~-Gf~~~~~ 80 (91)
+=.++.+||.+. ||+....
T Consensus 8 d~~~a~~FY~~~lg~~~~~~ 27 (121)
T cd07251 8 DLARSRAFYEALLGWKPSAD 27 (121)
T ss_pred CHHHHHHHHHHhcCceeccc
Confidence 346788999755 9987655
No 313
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=25.36 E-value=4.5 Score=22.88 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=11.5
Q ss_pred ccceEEEeecCCCcCceeeEEeeeCccccCc
Q 034552 2 VGDVNIYMNDLDNLELAEVEIMIAEPKSRGK 32 (91)
Q Consensus 2 VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~ 32 (91)
+|+|.+++..-.+ ||+||++
T Consensus 21 lgYciYFD~KRR~-----------dPdFRkk 40 (148)
T TIGR00985 21 LGYAIYFDYKRRN-----------DPDFRKK 40 (148)
T ss_pred HHHHHhhhhhhcc-----------CHHHHHH
Confidence 5666666555333 6777744
No 314
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=25.18 E-value=1.1e+02 Score=15.74 Aligned_cols=39 Identities=15% Similarity=0.272 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCcee
Q 034552 35 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (91)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~ 77 (91)
|-.++..+.+.+. ..|..-+.+.+ +....+.+++.|+..
T Consensus 65 gi~~L~~~~~~~~-~~g~~~~l~~~---~~~v~~~l~~~~~~~ 103 (117)
T PF01740_consen 65 GIQALVDIIKELR-RRGVQLVLVGL---NPDVRRILERSGLID 103 (117)
T ss_dssp HHHHHHHHHHHHH-HTTCEEEEESH---HHHHHHHHHHTTGHH
T ss_pred HHHHHHHHHHHHH-HCCCEEEEEEC---CHHHHHHHHHcCCCh
Confidence 4455566666666 56666554433 677888999999873
No 315
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=25.03 E-value=1e+02 Score=15.26 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhc
Q 034552 37 DAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 73 (91)
Q Consensus 37 ~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~ 73 (91)
..+...+.+-. ..|+..+.+.-+.+...+..+.+++
T Consensus 5 ~~L~~wl~~~~-~lG~d~i~i~d~~s~D~t~~~l~~~ 40 (97)
T PF13704_consen 5 DYLPEWLAHHL-ALGVDHIYIYDDGSTDGTREILRAL 40 (97)
T ss_pred HHHHHHHHHHH-HcCCCEEEEEECCCCccHHHHHHhC
Confidence 34555666666 7788888887776666666666654
No 316
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=25.02 E-value=99 Score=15.76 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=14.8
Q ss_pred ecCCcHHHHHHHHh-cCceeech
Q 034552 59 IGESNGASLRLFQK-LGFEDISY 80 (91)
Q Consensus 59 ~~~~n~~~~~~~~~-~Gf~~~~~ 80 (91)
+.++-.+++.+|.+ +|+.+...
T Consensus 6 ~V~Dl~~a~~~~~~~lG~~~~~~ 28 (109)
T PF13669_consen 6 VVPDLDAAAAFYCDVLGFEPWER 28 (109)
T ss_dssp EES-HHHHHHHHHHCTTHEEEEE
T ss_pred EcCCHHHHHHHHHHhhCCcEEEE
Confidence 33455678888887 99886644
No 317
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=25.00 E-value=1.4e+02 Score=17.53 Aligned_cols=34 Identities=3% Similarity=-0.083 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHH
Q 034552 35 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRL 69 (91)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~ 69 (91)
|+-++..+++.+. +.|++.+...+..........
T Consensus 30 g~piI~~~l~~l~-~~Gi~~I~iv~~~~~~~i~~~ 63 (217)
T cd04197 30 NVPLIDYTLEFLA-LNGVEEVFVFCCSHSDQIKEY 63 (217)
T ss_pred CEehHHHHHHHHH-HCCCCeEEEEeCCCHHHHHHH
Confidence 3568888888888 679998888777544333333
No 318
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=24.97 E-value=1.1e+02 Score=17.09 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=17.0
Q ss_pred ccEEEEEecCCcHHHHHHHH-hcCceeech
Q 034552 52 IHVFRAKIGESNGASLRLFQ-KLGFEDISY 80 (91)
Q Consensus 52 ~~~v~~~~~~~n~~~~~~~~-~~Gf~~~~~ 80 (91)
+..+.+.|.. =..+..||. .+||+....
T Consensus 7 i~Hi~l~V~D-le~a~~FY~~vLG~~~~~~ 35 (166)
T cd09014 7 LDHVNLLASD-VDANRDFMEEVLGFRLREQ 35 (166)
T ss_pred eeeEEEEcCC-HHHHHHHHHHccCCEEEEE
Confidence 3344444433 467888886 688887543
No 319
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=24.94 E-value=1.6e+02 Score=17.40 Aligned_cols=45 Identities=9% Similarity=0.074 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechh
Q 034552 35 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (91)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~ 81 (91)
|+-|+..+++-+. . .+..+.+.+.++-+....+..+.|++.....
T Consensus 26 GkpLI~~v~~al~-~-~~d~i~v~isp~tp~t~~~~~~~gv~vi~tp 70 (177)
T COG2266 26 GKPLIDRVLEALR-K-IVDEIIVAISPHTPKTKEYLESVGVKVIETP 70 (177)
T ss_pred CccHHHHHHHHHH-h-hcCcEEEEeCCCCHhHHHHHHhcCceEEEcC
Confidence 4566777777665 3 7889999999999999999999998877543
No 320
>COG0100 RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]
Probab=24.58 E-value=1.4e+02 Score=16.64 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhhcCccEEEEEecC---CcHHHHHHHHhcCceeechhhh
Q 034552 36 KDAVLMMMAYAVENFGIHVFRAKIGE---SNGASLRLFQKLGFEDISYSEI 83 (91)
Q Consensus 36 ~~l~~~~~~~~~~~~~~~~v~~~~~~---~n~~~~~~~~~~Gf~~~~~~~~ 83 (91)
..+.+.+.+.+. +.|+..+...+.. .-+++++.+.+.|++.....+.
T Consensus 64 ~~aa~~aa~~a~-e~Gi~~v~v~vkgpG~GreaAiraL~~ag~~i~~I~Dv 113 (129)
T COG0100 64 QLAAEDAAKKAK-EHGIKSVEVKVKGPGPGREAAIRALAAAGLKITRIEDV 113 (129)
T ss_pred HHHHHHHHHHHH-HhCccEEEEEEECCCCcHHHHHHHHHHccceEEEEEEc
Confidence 344555566666 6899888887654 5789999999999998776543
No 321
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=24.49 E-value=1.9e+02 Score=18.17 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCce
Q 034552 34 LAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 76 (91)
Q Consensus 34 ~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~ 76 (91)
.|.+....+.+.+. +.|++.+...+........++.+++|..
T Consensus 237 ~gi~~a~~~~~~l~-~~G~~giH~~t~n~~~~~~~il~~l~~~ 278 (281)
T TIGR00677 237 YGIELIVEMCQKLL-ASGIKGLHFYTLNLEKAALMILERLGLL 278 (281)
T ss_pred HHHHHHHHHHHHHH-HCCCCeeEEeccCchHHHHHHHHHcCCC
Confidence 45555555666666 5588889998988888999999998854
No 322
>PRK01229 N-glycosylase/DNA lyase; Provisional
Probab=24.49 E-value=1.5e+02 Score=17.92 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=26.7
Q ss_pred CcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceee
Q 034552 31 GKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDI 78 (91)
Q Consensus 31 ~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~ 78 (91)
=+|+|.+-...++.++. . .+.+. -+....++..++|+...
T Consensus 124 lpGIG~KTAd~vL~~~~-~--~~~~i-----VDtHv~Ri~~RlG~~~~ 163 (208)
T PRK01229 124 IKGIGYKEASHFLRNVG-Y--EDLAI-----LDRHILRFLKRYGLIEE 163 (208)
T ss_pred CCCCcHHHHHHHHHHcc-C--CCeee-----eeHHHHHHHHHhCCCcc
Confidence 36888888888775433 1 12222 25678899999999764
No 323
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=24.27 E-value=2e+02 Score=18.23 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHhhcCcc
Q 034552 35 AKDAVLMMMAYAVENFGIH 53 (91)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~ 53 (91)
...-+.++.+|++ +.|+.
T Consensus 71 ~~~dl~elv~Ya~-~KgVg 88 (273)
T PF10566_consen 71 PDFDLPELVDYAK-EKGVG 88 (273)
T ss_dssp TT--HHHHHHHHH-HTT-E
T ss_pred CccCHHHHHHHHH-HcCCC
Confidence 3455555666665 45544
No 324
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=24.24 E-value=1.5e+02 Score=16.78 Aligned_cols=43 Identities=7% Similarity=-0.086 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 37 DAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 37 ~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
.+++.+.+.++ ..|.-.+.......-.....+.++.||...-.
T Consensus 121 ~~l~~~~~~Lk-~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 121 RFLDELPEILK-EGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred HHHHhHHHhhC-CCCEEEEEEeccCChHHHHHHHHhCCCeEEEE
Confidence 34444445544 44443333333333456688889999987643
No 325
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=24.15 E-value=1.7e+02 Score=17.44 Aligned_cols=40 Identities=18% Similarity=0.047 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCce
Q 034552 36 KDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 76 (91)
Q Consensus 36 ~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~ 76 (91)
..+++.+.+.++ .-|.-.+.+.+.+.-..+...++++||.
T Consensus 115 ~~ile~~~~~l~-~ggrlV~naitlE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 115 EEILEAAWERLK-PGGRLVANAITLETLAKALEALEQLGGR 154 (187)
T ss_pred HHHHHHHHHHcC-cCCeEEEEeecHHHHHHHHHHHHHcCCc
Confidence 577777777765 4444444444555556788899999994
No 326
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=24.04 E-value=80 Score=15.87 Aligned_cols=19 Identities=5% Similarity=0.132 Sum_probs=14.1
Q ss_pred cHHHHHHHHh-cCceeechh
Q 034552 63 NGASLRLFQK-LGFEDISYS 81 (91)
Q Consensus 63 n~~~~~~~~~-~Gf~~~~~~ 81 (91)
=..|..||.+ +||+.....
T Consensus 11 ~~~s~~FY~~~lG~~~~~~~ 30 (114)
T cd07247 11 PERAKAFYGAVFGWTFEDMG 30 (114)
T ss_pred HHHHHHHHHhccCceeeecc
Confidence 4578999985 699876544
No 327
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=24.03 E-value=1.7e+02 Score=17.85 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=34.3
Q ss_pred eEEeeeCccccCc-chHHHHHHHHHHHHHhhcCccEEEEEecC-CcHHHHHHHHhcCceeec
Q 034552 20 VEIMIAEPKSRGK-GLAKDAVLMMMAYAVENFGIHVFRAKIGE-SNGASLRLFQKLGFEDIS 79 (91)
Q Consensus 20 i~~~~v~~~~r~~-G~g~~l~~~~~~~~~~~~~~~~v~~~~~~-~n~~~~~~~~~~Gf~~~~ 79 (91)
...+++ |...++ |+-+.+-+.+.++-- +.-+....++..+ .|.....|.+.+|-=...
T Consensus 77 ~kavIv-p~~~~~~g~~~~lk~~~e~~gi-~~~~P~~~CsL~~~~~p~i~~F~~~fGkP~~e 136 (217)
T PF02593_consen 77 VKAVIV-PSESPKPGLRRQLKKQLEEFGI-EVEFPKPFCSLEENGNPQIDEFAEYFGKPKVE 136 (217)
T ss_pred CCEEEE-ecCCCccchHHHHHHHHHhcCc-eeecCccccccCCCCChhHHHHHHHhCCceEE
Confidence 455555 777777 555566555555432 2334445555554 577788888888764443
No 328
>PF02334 RTP: Replication terminator protein; InterPro: IPR003432 The bacterial replication terminator protein (RTP) plays a role in the termination of DNA replication by impeding replication fork movement. Two RTP dimers bind to the two inverted repeat regions at the termination site.; GO: 0003677 DNA binding, 0006274 DNA replication termination; PDB: 2DPU_A 2DPD_A 1F4K_A 1J0R_B 2EFW_F 2DQR_B 1BM9_B.
Probab=23.82 E-value=27 Score=18.87 Aligned_cols=22 Identities=9% Similarity=0.113 Sum_probs=11.8
Q ss_pred ccCcchHHHHHHHHHHHHHhhcC
Q 034552 29 SRGKGLAKDAVLMMMAYAVENFG 51 (91)
Q Consensus 29 ~r~~G~g~~l~~~~~~~~~~~~~ 51 (91)
.+++|+|..+++.+-+..+ ..|
T Consensus 28 e~~r~Yg~q~Ld~lr~EFk-~~G 49 (122)
T PF02334_consen 28 EQERGYGLQLLDELRSEFK-PLG 49 (122)
T ss_dssp HTT-EBCTCHHHHHHHHHT-TTT
T ss_pred hcccchHHHHHHHHHHHhh-hcC
Confidence 4556666666666655544 444
No 329
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=23.72 E-value=1.8e+02 Score=19.27 Aligned_cols=31 Identities=16% Similarity=0.301 Sum_probs=23.0
Q ss_pred hcCccEEEEEecCCcHHHHHHHHhcCceeechhh
Q 034552 49 NFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (91)
Q Consensus 49 ~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (91)
.+|++.|.+-+ |+.-..-.+.+|-+.+++.+
T Consensus 333 ~Lgv~~irLlT---np~K~~~L~~~Gi~V~~~~~ 363 (367)
T PRK14019 333 DLGVGKMRLLS---SPRKFPSMSGFGLEVTGYVP 363 (367)
T ss_pred HcCCCeEEECC---CcHHHHhhhhCCcEEEEEec
Confidence 77899998876 45556667888888886654
No 330
>KOG2313 consensus Stress-induced protein UVI31+ [Signal transduction mechanisms]
Probab=23.58 E-value=1.3e+02 Score=15.92 Aligned_cols=44 Identities=14% Similarity=0.207 Sum_probs=32.7
Q ss_pred CceeeEEeeeCccccCcchHH--HHHHHHHHHHHhhcCccEEEEEe
Q 034552 16 ELAEVEIMIAEPKSRGKGLAK--DAVLMMMAYAVENFGIHVFRAKI 59 (91)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~--~l~~~~~~~~~~~~~~~~v~~~~ 59 (91)
..-.+...+|+++|.|+.+-. +|++.++....+..|++.+....
T Consensus 49 ~EtHFrv~vVS~~FeG~s~v~RHRlVy~~L~eEl~~~gvHAL~i~a 94 (100)
T KOG2313|consen 49 AETHFRVEVVSSAFEGLSLVKRHRLVYKALKEELAGTGVHALSIMA 94 (100)
T ss_pred CccEEEEEEechhhCCccHHHHHHHHHHHHHHHhhccceeEEEeec
Confidence 345677888999999998864 78887777666344788877655
No 331
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=23.55 E-value=68 Score=12.71 Aligned_cols=14 Identities=7% Similarity=0.422 Sum_probs=8.0
Q ss_pred cchHHHHHHHHHHH
Q 034552 32 KGLAKDAVLMMMAY 45 (91)
Q Consensus 32 ~G~g~~l~~~~~~~ 45 (91)
.|+|....+.++++
T Consensus 17 pGIG~~tA~~I~~~ 30 (30)
T PF00633_consen 17 PGIGPKTANAILSF 30 (30)
T ss_dssp TT-SHHHHHHHHHH
T ss_pred CCcCHHHHHHHHhC
Confidence 46777766666543
No 332
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=23.38 E-value=1.2e+02 Score=15.53 Aligned_cols=24 Identities=8% Similarity=-0.103 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhhcCccEEEEEecC
Q 034552 37 DAVLMMMAYAVENFGIHVFRAKIGE 61 (91)
Q Consensus 37 ~l~~~~~~~~~~~~~~~~v~~~~~~ 61 (91)
++++.+.+.++ +.|+.++.+.+.-
T Consensus 51 ~~i~~~~e~~~-~~G~~Rv~t~ikI 74 (92)
T PF01910_consen 51 ALIKEAHEALF-EAGAKRVVTVIKI 74 (92)
T ss_dssp HHHHHHHHHHH-CTTSSEEEEEEEE
T ss_pred HHHHHHHHHHH-HcCCCeEEEEEEE
Confidence 66777777887 7889988877643
No 333
>cd01274 AIDA-1b AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b is an amyloid-beta precursor protein interacting protein. It consists of ankyrin repeats, a SAM domain and a C-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=23.35 E-value=1.4e+02 Score=16.31 Aligned_cols=43 Identities=7% Similarity=-0.028 Sum_probs=29.0
Q ss_pred ceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEec
Q 034552 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIG 60 (91)
Q Consensus 17 ~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~ 60 (91)
.-+||..-| ++.||.....+.++.+..-.........+.+.+.
T Consensus 6 akyLGs~eV-~~~~G~~~~~~Am~kik~~~~~~~k~~~V~L~IS 48 (127)
T cd01274 6 AHYLGSLEI-GELEGTDSTHAAMTKIKESIIDWETIPRVTLDLT 48 (127)
T ss_pred EEccceEEc-cCCCCcHHHHHHHHHHHHhhhccCCCCEEEEEEe
Confidence 346788888 7899998888888887554431123456666665
No 334
>PRK11628 transcriptional regulator BolA; Provisional
Probab=23.19 E-value=1.3e+02 Score=15.93 Aligned_cols=47 Identities=6% Similarity=0.156 Sum_probs=35.2
Q ss_pred CceeeEEeeeCccccCcchHH--HHHHHHHHHHHhhcCccEEEEEecCCc
Q 034552 16 ELAEVEIMIAEPKSRGKGLAK--DAVLMMMAYAVENFGIHVFRAKIGESN 63 (91)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~--~l~~~~~~~~~~~~~~~~v~~~~~~~n 63 (91)
....+...+|++.|.|+-.-. ++++.++.... ..+++.+...+..-.
T Consensus 35 ~~~Hf~v~IVS~~F~G~s~v~RHRlVy~~L~~~i-~~~IHALsi~t~tp~ 83 (105)
T PRK11628 35 SESHFKVVLVSDRFTGERFLNRHRMIYSTLAEEL-STTVHALALHTYTIK 83 (105)
T ss_pred CCceEEEEEEChHhCCCCHHHHHHHHHHHHHHHH-hCCccceeeecCCHH
Confidence 345888999999999997753 78888877666 357888877765543
No 335
>cd01212 JIP JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JIP is a mitogen-activated protein kinase scaffold protein. JIP consists of a C-terminal SH3 domain, followed by a PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=23.16 E-value=1.6e+02 Score=16.71 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=24.5
Q ss_pred ceeeEEeeeCccccCcchHHHHHHHHHHHHH
Q 034552 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 47 (91)
Q Consensus 17 ~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~ 47 (91)
.-+||.+-| |+.+|..+..+.++.+....+
T Consensus 7 vkyLGsveV-~~~kG~~v~~~A~rki~~~~k 36 (148)
T cd01212 7 LGYLGSVEV-LAHKGNGVLCQAMRKIVGEYK 36 (148)
T ss_pred eEecceEEe-cCCCCcHHHHHHHHHHHHHHH
Confidence 457889999 899999999999998876543
No 336
>smart00443 G_patch glycine rich nucleic binding domain. A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins.
Probab=23.12 E-value=79 Score=13.69 Aligned_cols=15 Identities=20% Similarity=0.694 Sum_probs=11.4
Q ss_pred cHHHHHHHHhcCcee
Q 034552 63 NGASLRLFQKLGFED 77 (91)
Q Consensus 63 n~~~~~~~~~~Gf~~ 77 (91)
+....++..++||++
T Consensus 4 ~~~g~~~l~~mGw~~ 18 (47)
T smart00443 4 SNIGYKLLRKMGWKE 18 (47)
T ss_pred ccHHHHHHHHcCCCC
Confidence 345668999999985
No 337
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain. Disabled (Dab) Phosphotyrosine-binding domain. Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains.
Probab=23.05 E-value=1.6e+02 Score=16.65 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=30.5
Q ss_pred eeEEeeeCccccCcchHHHHHHHHHHHHHh-hcCccEEEEEecCC
Q 034552 19 EVEIMIAEPKSRGKGLAKDAVLMMMAYAVE-NFGIHVFRAKIGES 62 (91)
Q Consensus 19 ~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~-~~~~~~v~~~~~~~ 62 (91)
.|+..-| ++-||..+..+.+..+...+.. .....++.+.+..+
T Consensus 19 ylG~~eV-~e~RG~~v~~~Ai~klk~~~k~~~~kk~kV~L~IS~d 62 (139)
T cd01215 19 LIGIQEV-DKARGDAMCAEAMRKAKSIIKGAGAHKTRITLQINID 62 (139)
T ss_pred ecccEec-ccCCchHHHHHHHHHHHHHhhhhccccceEEEEEccC
Confidence 5778888 7899999998888888765541 23456666666544
No 338
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=22.94 E-value=2.1e+02 Score=18.21 Aligned_cols=48 Identities=19% Similarity=0.128 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechhh
Q 034552 34 LAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (91)
Q Consensus 34 ~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (91)
.-..+++.+++-+. +.|.+.-.+.=...|+....++..+|.+.....+
T Consensus 232 avl~li~~vi~~a~-~~g~~vsvCGe~a~~p~~~~~Ll~lGi~~lSv~p 279 (293)
T PF02896_consen 232 AVLRLIKQVIDAAH-KAGKPVSVCGEMASDPEAIPLLLGLGIRSLSVSP 279 (293)
T ss_dssp HHHHHHHHHHHHHH-HTT-EEEEESGGGGSHHHHHHHHHHT-SEEEE-G
T ss_pred HHHHHHHHHHHHHh-hcCcEEEEecCCCCCHHHHHHHHHcCCCEEEECH
Confidence 34578888888887 7787777777777899999999999999776544
No 339
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=22.87 E-value=1.6e+02 Score=19.24 Aligned_cols=38 Identities=8% Similarity=0.010 Sum_probs=25.8
Q ss_pred ceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCC
Q 034552 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (91)
Q Consensus 17 ~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~ 62 (91)
...+..+++.++ +.+.+.+++.+. +.|++.+.++++.-
T Consensus 121 ~~rwfQLYvykd-------r~It~~Lv~raE-k~GfkAlvlTvDtP 158 (363)
T KOG0538|consen 121 GIRWFQLYVYKD-------RDITEQLVKRAE-KAGFKALVLTVDTP 158 (363)
T ss_pred CcEEEEEEecCc-------hHHHHHHHHHHH-HcCceEEEEEeccc
Confidence 345555666554 456666777776 78999998888664
No 340
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=22.78 E-value=1.4e+02 Score=15.91 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=16.9
Q ss_pred cchHHHHHHHHHHHHHhhcCccEEE
Q 034552 32 KGLAKDAVLMMMAYAVENFGIHVFR 56 (91)
Q Consensus 32 ~G~g~~l~~~~~~~~~~~~~~~~v~ 56 (91)
-++...+++.+.+.+. +.+.++|.
T Consensus 4 ~si~~~iv~~v~~~a~-~~~~~kV~ 27 (113)
T PF01155_consen 4 LSIAQSIVEIVEEEAE-ENGAKKVT 27 (113)
T ss_dssp HHHHHHHHHHHHHHHH-CTT-SEEE
T ss_pred HHHHHHHHHHHHHHHH-HcCCCEEE
Confidence 3577889999999998 55554443
No 341
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=22.69 E-value=1.3e+02 Score=19.78 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=27.5
Q ss_pred cCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCc
Q 034552 30 RGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75 (91)
Q Consensus 30 r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf 75 (91)
.|-|+|.+++.++++.+..-.. ..+........ ..-..|++.|=
T Consensus 10 pGDGIGpEv~~~a~kVl~a~~~-~~~~~e~~~~~-~G~~~~~~~G~ 53 (348)
T COG0473 10 PGDGIGPEVMAAALKVLEAAAE-FGLDFEFEEAE-VGGEAYDKHGE 53 (348)
T ss_pred CCCCCCHHHHHHHHHHHHHhhh-cCCceEEEEeh-hhHHHHHHcCC
Confidence 4789999999999998863222 22333333333 23567777773
No 342
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=22.53 E-value=73 Score=15.60 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=14.6
Q ss_pred CcHHHHHHHH-hcCceeech
Q 034552 62 SNGASLRLFQ-KLGFEDISY 80 (91)
Q Consensus 62 ~n~~~~~~~~-~~Gf~~~~~ 80 (91)
+=..+.+||+ .+||+....
T Consensus 10 d~~~~~~FY~~~lG~~~~~~ 29 (114)
T cd07245 10 DLEASRAFYTDVLGLEEGPR 29 (114)
T ss_pred CHHHHHHHHHHccCCcccCc
Confidence 4468899996 999987654
No 343
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=22.51 E-value=1.2e+02 Score=15.25 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=13.8
Q ss_pred CcHHHHHHHHh-cCceeech
Q 034552 62 SNGASLRLFQK-LGFEDISY 80 (91)
Q Consensus 62 ~n~~~~~~~~~-~Gf~~~~~ 80 (91)
+=.++.+||.+ +||+....
T Consensus 10 d~~~a~~fY~~~lG~~~~~~ 29 (121)
T cd07233 10 DLEKSLDFYTDVLGMKLLRR 29 (121)
T ss_pred CcHHHHHHHHhccCCeEEEE
Confidence 34578899975 69987653
No 344
>cd00145 POLBc DNA polymerase type-B family catalytic domain. DNA-directed DNA polymerases elongate DNA by adding nucleotide triphosphate (dNTP) residues to the 5'-end of the growing chain of DNA. DNA-directed DNA polymerases are multifunctional with both synthetic (polymerase) and degradative modes (exonucleases) and play roles in the processes of DNA replication, repair, and recombination. DNA-dependent DNA polymerases can be classified in six main groups based upon their phylogenetic relationships with E. coli polymerase I (class A), E. coli polymerase II (class B), E. coli polymerase III (class C), euryarchaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB, and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family B DNA polymerases include E. coli DNA polymerase II, some eubacterial phage DNA polymerases, nuclear replicative DNA polymerases (alpha, delta, epsilon, and zeta), and eukaryotic viral and plasmid-borne enzymes. DNA polymerase is
Probab=22.49 E-value=1.7e+02 Score=18.70 Aligned_cols=28 Identities=11% Similarity=0.228 Sum_probs=21.4
Q ss_pred chHHHHHHHHHHHHHhhcCccEEEEEecC
Q 034552 33 GLAKDAVLMMMAYAVENFGIHVFRAKIGE 61 (91)
Q Consensus 33 G~g~~l~~~~~~~~~~~~~~~~v~~~~~~ 61 (91)
-.|+.++..+.+.+. +.|...++..|+.
T Consensus 136 ~~GR~~l~~~~~~ie-~~g~~VIYGDTDS 163 (323)
T cd00145 136 SFGREIIQDTIALVE-EHGARVIYGDTDS 163 (323)
T ss_pred HHHHHHHHHHHHHHH-HcCCEEEEECCCc
Confidence 368889999999987 6787777766543
No 345
>KOG1220 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]
Probab=22.41 E-value=96 Score=21.92 Aligned_cols=53 Identities=13% Similarity=0.026 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhhcCccEEE-----EEecCCcHHHHHHHHhcCceeechhhhhhhh
Q 034552 35 AKDAVLMMMAYAVENFGIHVFR-----AKIGESNGASLRLFQKLGFEDISYSEIFKEA 87 (91)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~v~-----~~~~~~n~~~~~~~~~~Gf~~~~~~~~~~~~ 87 (91)
|-++...+.-++.++..-.... +....++.-...+.++.||+.+....-|+++
T Consensus 342 GNElgALl~~~~le~~k~~~~~~~~~ml~s~vSs~l~~~ia~~eGf~~~~tltGFKwv 399 (607)
T KOG1220|consen 342 GNELGALLSWWVLEEHKGSTPVQDVSMLNSTVSSGLTRFIAEIEGFHHEETLTGFKWV 399 (607)
T ss_pred chHHHHHHHHHHHHhccCCCccchhhhhhhHHHHHHHHHHHHHhCceeeeccccchhh
Confidence 4455555555555443333333 4444556666777788899999888777655
No 346
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.20 E-value=78 Score=16.44 Aligned_cols=15 Identities=20% Similarity=0.257 Sum_probs=11.6
Q ss_pred cHHHHHHHHhcCcee
Q 034552 63 NGASLRLFQKLGFED 77 (91)
Q Consensus 63 n~~~~~~~~~~Gf~~ 77 (91)
...++++|++.|--+
T Consensus 13 s~~tlRyYe~~GLl~ 27 (107)
T cd04777 13 TIDTVRHYIDLGLLI 27 (107)
T ss_pred CHHHHHHHHHCCCcC
Confidence 457889999999753
No 347
>PLN02367 lactoylglutathione lyase
Probab=22.17 E-value=89 Score=19.22 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=14.2
Q ss_pred cHHHHHHHH-hcCceeech
Q 034552 63 NGASLRLFQ-KLGFEDISY 80 (91)
Q Consensus 63 n~~~~~~~~-~~Gf~~~~~ 80 (91)
=..|++||. -+||+...+
T Consensus 86 le~Sl~FYt~vLGm~ll~r 104 (233)
T PLN02367 86 PKASLDFYSRVLGMSLLKR 104 (233)
T ss_pred HHHHHHHHHHhcCCEEeEE
Confidence 467999996 599997764
No 348
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=22.13 E-value=1.3e+02 Score=18.56 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=20.6
Q ss_pred HHHHHH-hhcCccEEEEEecCCcHHHHHHHHhcCceeec
Q 034552 42 MMAYAV-ENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (91)
Q Consensus 42 ~~~~~~-~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (91)
+++.++ +...++-+.-++.+++.-...=..++||....
T Consensus 31 Al~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~e 69 (262)
T KOG3040|consen 31 ALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVSE 69 (262)
T ss_pred HHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCccH
Confidence 344444 22234444444445555555666789998654
No 349
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=21.83 E-value=91 Score=13.95 Aligned_cols=14 Identities=36% Similarity=0.560 Sum_probs=10.7
Q ss_pred HHHHHhcCceeech
Q 034552 67 LRLFQKLGFEDISY 80 (91)
Q Consensus 67 ~~~~~~~Gf~~~~~ 80 (91)
.++.+++||+.+..
T Consensus 24 ~r~L~~~G~~Vi~I 37 (58)
T PF08373_consen 24 HRHLKALGYKVISI 37 (58)
T ss_pred HHHHHHCCCEEEEe
Confidence 46778999998754
No 350
>PF00376 MerR: MerR family regulatory protein; InterPro: IPR000551 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these is the MerR subfamily. MerR, which is found in many bacterial species mediates the mercuric-dependent induction of the mercury resistance operon. In the absence of mercury merR represses transcription by binding tightly, as a dimer, to the 'mer' operator region; when mercury is present the dimeric complex binds a single ion and becomes a potent transcriptional activator, while remaining bound to the mer site. Members of the family include the mercuric resistance operon regulatory protein merR; Bacillus subtilis bltR and bmrR; Bacillus glnR; Streptomyces coelicolor hspR; Bradyrhizobium japonicum nolA; Escherichia coli superoxide response regulator soxR; and Streptomyces lividans transcriptional activator tipA [, , , , , ]. Other members include hypothetical proteins from E. coli, B. subtilis and Haemophilus influenzae. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3HH0_A 2DG6_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q07_A 1Q06_A 1Q05_B ....
Probab=21.76 E-value=85 Score=13.12 Aligned_cols=15 Identities=20% Similarity=0.461 Sum_probs=11.2
Q ss_pred cHHHHHHHHhcCcee
Q 034552 63 NGASLRLFQKLGFED 77 (91)
Q Consensus 63 n~~~~~~~~~~Gf~~ 77 (91)
+...+++|++.|.-+
T Consensus 12 s~~tlR~ye~~Gll~ 26 (38)
T PF00376_consen 12 SPRTLRYYEREGLLP 26 (38)
T ss_dssp -HHHHHHHHHTTSS-
T ss_pred CHHHHHHHHHCCCCC
Confidence 467889999999763
No 351
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=21.66 E-value=2.2e+02 Score=17.76 Aligned_cols=54 Identities=11% Similarity=-0.037 Sum_probs=33.1
Q ss_pred CccceEEEeecCCCcCceeeEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEE
Q 034552 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAK 58 (91)
Q Consensus 1 ~VG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~ 58 (91)
++|++.+..... .+...++..--+|+ .=+|+-..++..+++.++ ..|++.+.+.
T Consensus 192 i~af~~~~~~~~--~~~~~~~~~k~~~~-a~~G~~e~l~~~~~~~~~-~~g~~~lnLg 245 (299)
T PF09924_consen 192 IVAFAIGSPLGG--RDGWSIDFEKADPD-APKGIYEFLNVEFAEHLK-AEGVEYLNLG 245 (299)
T ss_dssp EEEEEEEEEEE---TTEEEEEEEEE-TT--STTHHHHHHHHHHHHS---TT--EEE--
T ss_pred EEEEEEEEEccC--CccEEEEEEecCCC-CCCcHHHHHHHHHHHhhh-hCCceEEEcc
Confidence 356666665552 24566666666666 347899999999999998 6789988743
No 352
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=21.60 E-value=1.5e+02 Score=15.85 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=22.8
Q ss_pred cchHHHHHHHHHHHHHhhcC---ccEEEEEecCC---cHHHHHHH
Q 034552 32 KGLAKDAVLMMMAYAVENFG---IHVFRAKIGES---NGASLRLF 70 (91)
Q Consensus 32 ~G~g~~l~~~~~~~~~~~~~---~~~v~~~~~~~---n~~~~~~~ 70 (91)
-++...+++.+.+.+. +.+ ++++.+.+-.- ++.+.+|.
T Consensus 4 lsi~~~iv~~v~~~a~-~~~~~rV~~V~l~iG~ls~v~pe~L~f~ 47 (113)
T PRK12380 4 LSLCQSAVEIIQRQAE-QHDVKRVTAVWLEIGALSCVEESAVRFS 47 (113)
T ss_pred HHHHHHHHHHHHHHHH-HhCCCeEEEEEEEEcCccccCHHHHHHH
Confidence 3577888999988887 554 44444443332 34455444
No 353
>PF02021 UPF0102: Uncharacterised protein family UPF0102; InterPro: IPR003509 The proteins in this entry are functionally uncharacterised.; PDB: 3FOV_A.
Probab=21.52 E-value=1.1e+02 Score=15.70 Aligned_cols=17 Identities=12% Similarity=0.323 Sum_probs=12.2
Q ss_pred HHHHHHHHhcCceeech
Q 034552 64 GASLRLFQKLGFEDISY 80 (91)
Q Consensus 64 ~~~~~~~~~~Gf~~~~~ 80 (91)
..|..++++.||+....
T Consensus 4 ~~A~~~L~~~G~~IL~r 20 (93)
T PF02021_consen 4 ELAARYLERKGYRILER 20 (93)
T ss_dssp HHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHCCCEEeee
Confidence 35678889999998764
No 354
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=21.52 E-value=1.6e+02 Score=16.09 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=17.9
Q ss_pred chHHHHHHHHHHHHHhhcCccEEE
Q 034552 33 GLAKDAVLMMMAYAVENFGIHVFR 56 (91)
Q Consensus 33 G~g~~l~~~~~~~~~~~~~~~~v~ 56 (91)
.++..+++.+++++. +.+.+++.
T Consensus 5 Sla~aii~~i~~~A~-~~~a~~V~ 27 (115)
T COG0375 5 SLAQAIIELIEEQAE-KHGAKRVT 27 (115)
T ss_pred HHHHHHHHHHHHHHH-HcCCceEE
Confidence 477899999999998 67765443
No 355
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=21.47 E-value=1.6e+02 Score=17.66 Aligned_cols=53 Identities=8% Similarity=-0.066 Sum_probs=30.3
Q ss_pred cCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeechhh
Q 034552 30 RGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (91)
Q Consensus 30 r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (91)
+=.|+|.+..+.++-.++.+.....-..........+......+||+......
T Consensus 111 ~vpGIGkKtAeRIIlELkdKl~~~~~~~~~~~~~~ea~~AL~~LGy~~~ea~~ 163 (196)
T PRK13901 111 KVKGIGNKMAGKIFLKLRGKLVKNDELESSLFKFKELEQSIVNMGFDRKLVNS 163 (196)
T ss_pred hCCCCCHHHHHHHHHHHHHhhccccccccCcccHHHHHHHHHHcCCCHHHHHH
Confidence 34688888888777777644321100000111124577889999998765543
No 356
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=21.44 E-value=1.6e+02 Score=18.32 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=28.8
Q ss_pred CccccCcchHHHHHHHHHHHHHhhcCccEEEEEecC
Q 034552 26 EPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGE 61 (91)
Q Consensus 26 ~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~ 61 (91)
.|..-|.--|...+..++.+|. +.|++.+.+....
T Consensus 36 ~~r~~Gh~~G~~~~~~i~~~~~-~lgik~ltlyafS 70 (245)
T COG0020 36 LPRIEGHKAGAKALREILEWCL-ELGIKYLTLYAFS 70 (245)
T ss_pred CChhHHHHHhHHHHHHHHHHHH-HcCCCEEEEEEEe
Confidence 3566677789999999999999 8999999888544
No 357
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=21.41 E-value=1.5e+02 Score=15.85 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=23.6
Q ss_pred cchHHHHHHHHHHHHHhhcC---ccEEEEEecCC---cHHHHHHH
Q 034552 32 KGLAKDAVLMMMAYAVENFG---IHVFRAKIGES---NGASLRLF 70 (91)
Q Consensus 32 ~G~g~~l~~~~~~~~~~~~~---~~~v~~~~~~~---n~~~~~~~ 70 (91)
-++...+++.+.+.+. +.+ +++|.+.+-.- ++.+.+|.
T Consensus 4 ~si~~~iv~~v~~~a~-~~~~~~V~~V~l~iG~ls~V~p~~L~f~ 47 (114)
T PRK03681 4 ITLCQRALELIEQQAA-KHGAKRVTGVWLKIGAFSCVETSSLAFC 47 (114)
T ss_pred HHHHHHHHHHHHHHHH-HcCCCeEEEEEEEEcCccccCHHHHHHH
Confidence 3678889999999888 555 44455444333 34555544
No 358
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=21.24 E-value=1e+02 Score=16.34 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=13.1
Q ss_pred CcchHHHHHHHHHHHHHhhcC
Q 034552 31 GKGLAKDAVLMMMAYAVENFG 51 (91)
Q Consensus 31 ~~G~g~~l~~~~~~~~~~~~~ 51 (91)
.+|+....++.+++.+. +.|
T Consensus 3 ~kg~~~e~I~~vi~~l~-~~g 22 (121)
T PF02631_consen 3 RKGFSEEAIEEVIDRLK-ELG 22 (121)
T ss_dssp HTT--HHHHHHHHHHHH-HTT
T ss_pred ccCCCHHHHHHHHHHHH-HcC
Confidence 46778888888888887 444
No 359
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=21.15 E-value=31 Score=21.74 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceeech
Q 034552 39 VLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 39 ~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (91)
+.++-.++. +.|+..+...-. .+....+|+.+..|...+.
T Consensus 21 Vaais~~l~-~~g~NI~~~~qf-~D~~~g~FFmR~~f~~~~~ 60 (287)
T COG0788 21 VAAISGFLA-EHGCNIVDSDQF-DDPETGRFFMRVEFEGEGG 60 (287)
T ss_pred HHHHHHHHH-HcCCceeecccc-cccccCeEEEEEEEecCCC
Confidence 445556666 788998888777 5667889999999987765
No 360
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=21.14 E-value=95 Score=16.95 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=14.7
Q ss_pred CcHHHHHHH-HhcCceeech
Q 034552 62 SNGASLRLF-QKLGFEDISY 80 (91)
Q Consensus 62 ~n~~~~~~~-~~~Gf~~~~~ 80 (91)
+=..+.+|| +-+||+....
T Consensus 9 Dle~s~~Fy~~vLG~~~~~~ 28 (141)
T cd07258 9 NFEASRDSLVEDFGFRVSDL 28 (141)
T ss_pred CHHHHHHHHHhcCCCEeeee
Confidence 345788999 7999997654
No 361
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=21.02 E-value=95 Score=19.20 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=18.3
Q ss_pred cEEEEEecCCcHHHHHHHHh-cCceeech
Q 034552 53 HVFRAKIGESNGASLRLFQK-LGFEDISY 80 (91)
Q Consensus 53 ~~v~~~~~~~n~~~~~~~~~-~Gf~~~~~ 80 (91)
..+.+.|. +=.++++||++ +||+....
T Consensus 6 ~Hi~l~V~-Dle~s~~FY~~~LG~~~~~~ 33 (303)
T TIGR03211 6 GHVELRVL-DLEESLKHYTDVLGLEETGR 33 (303)
T ss_pred eEEEEEeC-CHHHHHHHHHHhcCCEEeee
Confidence 34444443 35689999975 99998754
No 362
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=20.98 E-value=85 Score=18.40 Aligned_cols=21 Identities=19% Similarity=0.426 Sum_probs=15.1
Q ss_pred EeeeCccccCcchHHHHHHHH
Q 034552 22 IMIAEPKSRGKGLAKDAVLMM 42 (91)
Q Consensus 22 ~~~v~~~~r~~G~g~~l~~~~ 42 (91)
.+.+||++.|.-+-+.+.+.+
T Consensus 51 IIfTDpD~~GekIRk~i~~~v 71 (174)
T TIGR00334 51 IILTDPDFPGEKIRKKIEQHL 71 (174)
T ss_pred EEEeCCCCchHHHHHHHHHHC
Confidence 346689999887777766653
No 363
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=20.97 E-value=2e+02 Score=17.02 Aligned_cols=41 Identities=24% Similarity=0.233 Sum_probs=27.1
Q ss_pred eEEeeeCccccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcH
Q 034552 20 VEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNG 64 (91)
Q Consensus 20 i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~ 64 (91)
+-.++-|..++|.|.|.+++..+.. ...+..+-+-..++|+
T Consensus 55 V~VMfDD~G~~g~G~GE~Al~~v~~----h~~IeVLG~iAVASnT 95 (180)
T PF14097_consen 55 VLVMFDDKGFIGEGPGEQALEYVAN----HPDIEVLGAIAVASNT 95 (180)
T ss_pred EEEEEeCCCCCCCCccHHHHHHHHc----CCCceEEEEEEEEecC
Confidence 4445667899999999998888765 3444544444444443
No 364
>PF12294 DUF3626: Protein of unknown function (DUF3626); InterPro: IPR022074 This family of proteins is found in bacteria. Proteins in this family are typically between 294 and 374 amino acids in length.
Probab=20.96 E-value=72 Score=20.37 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=15.9
Q ss_pred eEEeeeCccccCcchHHHHHHH
Q 034552 20 VEIMIAEPKSRGKGLAKDAVLM 41 (91)
Q Consensus 20 i~~~~v~~~~r~~G~g~~l~~~ 41 (91)
+..+++||.|||..++..+-..
T Consensus 191 VeaLVlDPsyrgT~ve~~~~~l 212 (297)
T PF12294_consen 191 VEALVLDPSYRGTEVEAAARAL 212 (297)
T ss_pred hHHHhcCccccCChHHHHHHHH
Confidence 4556889999999777655433
No 365
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=20.89 E-value=1.1e+02 Score=18.82 Aligned_cols=28 Identities=14% Similarity=0.059 Sum_probs=17.4
Q ss_pred ccEEEEEecCCcHHHHHHHH-hcCceeech
Q 034552 52 IHVFRAKIGESNGASLRLFQ-KLGFEDISY 80 (91)
Q Consensus 52 ~~~v~~~~~~~n~~~~~~~~-~~Gf~~~~~ 80 (91)
+..+.+.|.. =..|++||. -+||+....
T Consensus 4 i~~v~l~V~D-l~~s~~FY~~~LGl~~~~~ 32 (286)
T TIGR03213 4 LGYLGIGVSD-VDAWREFATEVLGMMVASE 32 (286)
T ss_pred eeEEEEEeCC-HHHHHHHHHhccCcccccC
Confidence 3445554444 357888995 599987643
No 366
>PRK07328 histidinol-phosphatase; Provisional
Probab=20.83 E-value=2.2e+02 Score=17.52 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=20.8
Q ss_pred HHHHHHHhhcCccEEEEEecCCc--------HHHHHHHHhcCceeec
Q 034552 41 MMMAYAVENFGIHVFRAKIGESN--------GASLRLFQKLGFEDIS 79 (91)
Q Consensus 41 ~~~~~~~~~~~~~~v~~~~~~~n--------~~~~~~~~~~Gf~~~~ 79 (91)
.+++.++ +.|++ +.+..++++ ..+.++.+++||+..-
T Consensus 212 ~il~~~~-~~g~~-itigSDAH~~~~vg~~~~~a~~~l~~~G~~~~~ 256 (269)
T PRK07328 212 ALLRACR-ERGIP-VVLGSDAHRPEEVGFGFAEALALLKEVGYTETV 256 (269)
T ss_pred HHHHHHH-HcCCC-EEEeCCCCCHHHHhccHHHHHHHHHHcCCcEEE
Confidence 3445555 55665 555555444 2355666778887653
No 367
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=20.72 E-value=1.4e+02 Score=15.27 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=15.6
Q ss_pred EEEEecCCcHHHHHHHH-hcCceeec
Q 034552 55 FRAKIGESNGASLRLFQ-KLGFEDIS 79 (91)
Q Consensus 55 v~~~~~~~n~~~~~~~~-~~Gf~~~~ 79 (91)
+.+.|. +=.++.+||+ .+||+...
T Consensus 5 v~l~v~-D~~~s~~FY~~~lG~~~~~ 29 (128)
T TIGR03081 5 VGIAVP-DLEEAAKLYEDVLGAHVSH 29 (128)
T ss_pred EEEEeC-CHHHHHHHHHHHhCCCCcc
Confidence 344443 4457888997 58988764
No 368
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=20.65 E-value=2e+02 Score=18.41 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=27.4
Q ss_pred hcCccEEEEEecCCcHHHHHHHHhcCceeechhhhhhh
Q 034552 49 NFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKE 86 (91)
Q Consensus 49 ~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~~~~~ 86 (91)
..|.+.+.+ +-....-.+...+++||.+....+.|.+
T Consensus 276 r~gL~~Vv~-~GlGefLi~~A~~~lg~ec~~i~e~~g~ 312 (330)
T COG1548 276 RYGLNTVVA-TGLGEFLIQEACKRLGYECISIDETYGK 312 (330)
T ss_pred HcChhhhhh-ccchHHHHHHHHHhhCCeEEEhhhhhcc
Confidence 678888766 4444667778889999998887766643
No 369
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=20.58 E-value=81 Score=18.32 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=18.7
Q ss_pred ccEEEEEecC-CcHHHHHHHHh-cCceeechh
Q 034552 52 IHVFRAKIGE-SNGASLRLFQK-LGFEDISYS 81 (91)
Q Consensus 52 ~~~v~~~~~~-~n~~~~~~~~~-~Gf~~~~~~ 81 (91)
+..+...|.. +-..+..||.+ +||+.....
T Consensus 4 iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~ 35 (191)
T cd07250 4 IDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSF 35 (191)
T ss_pred eeEEEeecChhHHHHHHHHHHHhhCCceeeEE
Confidence 3445444441 34678899965 999986543
No 370
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=20.54 E-value=1.5e+02 Score=18.83 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=32.0
Q ss_pred ccCcchHHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHH
Q 034552 29 SRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLF 70 (91)
Q Consensus 29 ~r~~G~g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~ 70 (91)
|=+-|+|+..+..-+..+..+.|.+.+...|++..++...+.
T Consensus 6 YGKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DST~~ll 47 (273)
T PF00142_consen 6 YGKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADSTRLLL 47 (273)
T ss_dssp EESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTSSCHHH
T ss_pred EcCCCcccChhhhHHHHHHHhccceeeEecccCCCccceecc
Confidence 445689999998888888888999999999999876654444
No 371
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=20.52 E-value=1.9e+02 Score=16.57 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=20.3
Q ss_pred CccEEEEEecCCcHHH-HHHHHhcCceeech
Q 034552 51 GIHVFRAKIGESNGAS-LRLFQKLGFEDISY 80 (91)
Q Consensus 51 ~~~~v~~~~~~~n~~~-~~~~~~~Gf~~~~~ 80 (91)
++--....++.....+ .+++++-||+.+..
T Consensus 45 ~~~lflWvTn~~~~~~~~~l~~~WGf~~~~~ 75 (176)
T PF05063_consen 45 GALLFLWVTNSQLPEAKLELFPAWGFEYVTE 75 (176)
T ss_pred CcEEEEEeccchhhHHHHHHHHhCCCEEEEE
Confidence 4333334455666667 89999999998754
No 372
>PRK08815 GTP cyclohydrolase; Provisional
Probab=20.44 E-value=2.8e+02 Score=18.51 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=22.7
Q ss_pred hcCccEEEEEecCCcHHHHHHHHhcCceeechhh
Q 034552 49 NFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (91)
Q Consensus 49 ~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (91)
..|+++|.+-++ |..-..-.+.+|.+.++..+
T Consensus 310 dLGV~kirLLTn--np~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 310 GLGITRVRLLTN--NPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HcCCCeEEECCC--CHHHHHHHHhCCCEEEEEec
Confidence 678888876554 55555667788888877654
No 373
>PF09754 PAC2: PAC2 family; InterPro: IPR019151 This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome, which is about 2000 kilodaltons (kDa) in molecular mass and contains one 20S core particle structure and two 19S regulatory caps. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits [, , , ].; PDB: 3MNF_A 2P90_B 3E35_A 3GAA_D 2WAM_C.
Probab=20.42 E-value=2e+02 Score=16.88 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=20.8
Q ss_pred cchHHHHHHHHHHHHHhhcCccEEEE
Q 034552 32 KGLAKDAVLMMMAYAVENFGIHVFRA 57 (91)
Q Consensus 32 ~G~g~~l~~~~~~~~~~~~~~~~v~~ 57 (91)
.+....+.+.++++++ +.|++.+.+
T Consensus 80 ~~~~~~f~~~l~~~~~-~~g~~~vi~ 104 (219)
T PF09754_consen 80 PGRWYEFAEELLDWIK-SFGVKEVIV 104 (219)
T ss_dssp SCGHHHHHHHHHHHHH-HTTECEEEE
T ss_pred chHHHHHHHHHHHHHH-HcCCCEEEE
Confidence 4677899999999998 888888874
No 374
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=20.36 E-value=2.1e+02 Score=17.10 Aligned_cols=40 Identities=25% Similarity=0.205 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhhcCccEEEEEecCCcHHHHHHHHhcCceee
Q 034552 35 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDI 78 (91)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~ 78 (91)
-+++++.++-.|+ +.|++...+-..-+|. .|.+.+.|.+-
T Consensus 124 l~~Lm~DaLi~Ak-~~gfDVFNaLd~mdN~---~fL~~lKFg~G 163 (190)
T PF02799_consen 124 LKELMNDALILAK-NEGFDVFNALDLMDNS---SFLEDLKFGPG 163 (190)
T ss_dssp HHHHHHHHHHHHH-HTTESEEEEESTTTGG---GTTTTTT-EEE
T ss_pred HHHHHHHHHHHHH-HcCCCEEehhhhccch---hhHhhCCccCC
Confidence 4689999998888 7999988887777776 47889999854
No 375
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=20.34 E-value=1.7e+02 Score=16.08 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=12.4
Q ss_pred cHHHHHHHH-hcCceeec
Q 034552 63 NGASLRLFQ-KLGFEDIS 79 (91)
Q Consensus 63 n~~~~~~~~-~~Gf~~~~ 79 (91)
=.+|++||. .+||+...
T Consensus 12 le~a~~FY~~~LG~~~~~ 29 (153)
T cd07257 12 FAASFDWYTETFGLKPSD 29 (153)
T ss_pred HHHHHHHHHHhcCCeEEe
Confidence 457888984 68998754
No 376
>PRK14686 hypothetical protein; Provisional
Probab=20.30 E-value=1.2e+02 Score=16.44 Aligned_cols=17 Identities=12% Similarity=0.284 Sum_probs=12.6
Q ss_pred HHHHHHHHhcCceeech
Q 034552 64 GASLRLFQKLGFEDISY 80 (91)
Q Consensus 64 ~~~~~~~~~~Gf~~~~~ 80 (91)
..+.+++++.||+...+
T Consensus 13 ~~A~~~L~~~Gy~il~r 29 (119)
T PRK14686 13 DLAVEFLIKKGYTILER 29 (119)
T ss_pred HHHHHHHHHCCCEEEEE
Confidence 35677888888888764
No 377
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=20.27 E-value=1.8e+02 Score=16.43 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=25.5
Q ss_pred hcCccEEEEEecCCcHHHHHHHHhcCceee
Q 034552 49 NFGIHVFRAKIGESNGASLRLFQKLGFEDI 78 (91)
Q Consensus 49 ~~~~~~v~~~~~~~n~~~~~~~~~~Gf~~~ 78 (91)
+.+.+.+++.....|..+.+.++..|-..+
T Consensus 95 ~~~~kv~W~QlGi~n~ea~~~~~~aG~~vV 124 (140)
T COG1832 95 EKGAKVVWLQLGIRNEEAAEKARDAGLDVV 124 (140)
T ss_pred hhCCCeEEEecCcCCHHHHHHHHHhCcHHH
Confidence 456889999999999999999999998433
No 378
>PRK14675 hypothetical protein; Provisional
Probab=20.20 E-value=1.2e+02 Score=16.65 Aligned_cols=17 Identities=6% Similarity=0.231 Sum_probs=12.9
Q ss_pred HHHHHHHHhcCceeech
Q 034552 64 GASLRLFQKLGFEDISY 80 (91)
Q Consensus 64 ~~~~~~~~~~Gf~~~~~ 80 (91)
..|.+++++.||++..+
T Consensus 16 ~~A~~~L~~~G~~il~r 32 (125)
T PRK14675 16 SIAVTYLKGLRYKIVER 32 (125)
T ss_pred HHHHHHHHHCCCEEEEE
Confidence 35677888889988764
No 379
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=20.20 E-value=1.6e+02 Score=15.55 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=16.7
Q ss_pred EEecCCcHHHHHHHH-hcCceeechh
Q 034552 57 AKIGESNGASLRLFQ-KLGFEDISYS 81 (91)
Q Consensus 57 ~~~~~~n~~~~~~~~-~~Gf~~~~~~ 81 (91)
+.+..+=..+++||+ .+|++.....
T Consensus 5 L~~~~~~~eAi~FY~~~fg~~~~~~~ 30 (128)
T cd06588 5 LWFNGNAEEALEFYQSVFGGEITSLT 30 (128)
T ss_pred EeeCCCHHHHHHHHHHHhCCEeEEEE
Confidence 344455567888996 5888876544
No 380
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=20.13 E-value=1.7e+02 Score=15.97 Aligned_cols=29 Identities=14% Similarity=0.021 Sum_probs=22.0
Q ss_pred eeeEEeeeCccccCcchHHHHHHHHHHHH
Q 034552 18 AEVEIMIAEPKSRGKGLAKDAVLMMMAYA 46 (91)
Q Consensus 18 ~~i~~~~v~~~~r~~G~g~~l~~~~~~~~ 46 (91)
...+++.+||++.++|.-.-+-.++....
T Consensus 63 ~~~~~i~IDP~~~~KGC~~TL~HEL~H~W 91 (141)
T PHA02456 63 QFVGWIEIDPDYANKGCRDTLAHELNHAW 91 (141)
T ss_pred cceeEEEECCcccccchHHHHHHHHHHHH
Confidence 35778899999999998777666655543
No 381
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=20.11 E-value=1.2e+02 Score=14.38 Aligned_cols=19 Identities=21% Similarity=0.454 Sum_probs=13.3
Q ss_pred CcHHHHHHHHhcCceeech
Q 034552 62 SNGASLRLFQKLGFEDISY 80 (91)
Q Consensus 62 ~n~~~~~~~~~~Gf~~~~~ 80 (91)
......++++++||+....
T Consensus 20 ~~~~i~~~L~~lg~~~~~~ 38 (70)
T PF03484_consen 20 SPEEIIKILKRLGFKVEKI 38 (70)
T ss_dssp -HHHHHHHHHHTT-EEEE-
T ss_pred CHHHHHHHHHHCCCEEEEC
Confidence 3456788999999998773
No 382
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=20.11 E-value=1.1e+02 Score=18.22 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=15.4
Q ss_pred HHHHHHHhcCceeechhhhhh
Q 034552 65 ASLRLFQKLGFEDISYSEIFK 85 (91)
Q Consensus 65 ~~~~~~~~~Gf~~~~~~~~~~ 85 (91)
+.-+-+++.||+.+|.+..|-
T Consensus 144 ~lskdLKkrGFkFvGpt~~ys 164 (187)
T PRK10353 144 ALSKALKKRGFKFVGTTICYS 164 (187)
T ss_pred HHHHHHHHcCCcccCcHHHHH
Confidence 444556799999999876653
No 383
>PRK14689 hypothetical protein; Provisional
Probab=20.04 E-value=1.2e+02 Score=16.68 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=13.5
Q ss_pred HHHHHHHHhcCceeechh
Q 034552 64 GASLRLFQKLGFEDISYS 81 (91)
Q Consensus 64 ~~~~~~~~~~Gf~~~~~~ 81 (91)
..|.+++++.||+...+.
T Consensus 16 ~~Aa~~L~~~Gy~Il~rN 33 (124)
T PRK14689 16 ERVLRLLQRRGWRLLDRN 33 (124)
T ss_pred HHHHHHHHHCCCEEEEEe
Confidence 357778889999887653
No 384
>PRK12497 hypothetical protein; Reviewed
Probab=20.00 E-value=1.3e+02 Score=16.22 Aligned_cols=16 Identities=13% Similarity=0.260 Sum_probs=12.1
Q ss_pred HHHHHHHhcCceeech
Q 034552 65 ASLRLFQKLGFEDISY 80 (91)
Q Consensus 65 ~~~~~~~~~Gf~~~~~ 80 (91)
.+..++++.||+...+
T Consensus 15 ~A~~~L~~~Gy~Il~r 30 (119)
T PRK12497 15 LAARYLESKGLRILAR 30 (119)
T ss_pred HHHHHHHHCCCEEEcc
Confidence 5667888888888764
Done!