BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034553
(91 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 49.3 bits (116), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVXXXXXXXXXXXAESNK 62
L D N K LYRR + + + + A+ D +K +E +PQN+ E N+
Sbjct: 344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403
Query: 63 RDAKFYANMFARVTKDSS 80
RD + YANMF + + +
Sbjct: 404 RDRRIYANMFKKFAEQDA 421
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVXXXXXXXXXXXAESNK 62
L D N K LYRR + + + + A+ D +K +E +PQN+ E N+
Sbjct: 344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNE 403
Query: 63 RDAKFYANMFARVTKDSS 80
RD + YANMF + + +
Sbjct: 404 RDRRTYANMFKKFAEQDA 421
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVXXXXXXXXXXXAESNK 62
L+ D +N K L+RR + ++ + D LA D +K ++ P N+
Sbjct: 223 LELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282
Query: 63 RDAKFYANMFARVTKDSSVA 82
R+ K YANMF R+ ++ + A
Sbjct: 283 REKKLYANMFERLAEEENKA 302
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 38/80 (47%)
Query: 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVXXXXXXXXXXXAESNK 62
L+ D +N K L RR + ++ + D LA D +K ++ P N+
Sbjct: 223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282
Query: 63 RDAKFYANMFARVTKDSSVA 82
R+ K YANMF R+ ++ + A
Sbjct: 283 REKKLYANMFERLAEEENKA 302
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVXXXXXXXXXXXAESNK 62
L+ D N KALYRRAQ + + + A D+KKA E P+++ +
Sbjct: 300 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 359
Query: 63 RDAKFYANMFA 73
++ YA MFA
Sbjct: 360 KEKAAYAKMFA 370
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN 43
L+ D +N KA YRR Y + D A D +KA+E DP N
Sbjct: 69 ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN 43
L+ D +N A Y Y + D A +KA+E DP N
Sbjct: 35 ALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNN 76
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR 44
++ D +VKALYRR+Q ++ L A LD+++ + +P+N+
Sbjct: 91 AIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%)
Query: 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVXXXXXXXXXXXAESN 61
VL D +NVKALY+ M L A+ ++ KA +P N ++ E+
Sbjct: 114 VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR 173
Query: 62 KRDAKFYANMFAR 74
K+D + MF +
Sbjct: 174 KKDKLTFGGMFDK 186
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 28.5 bits (62), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREV 46
L+ D +N +A Y Y + D A +KA+E DP N E
Sbjct: 35 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79
Score = 28.5 bits (62), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREV 46
L+ D +N +A Y Y + D A +KA+E DP N E
Sbjct: 69 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREV 46
L+ D +N +A Y Y + D A +KA+E DP N E
Sbjct: 35 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREV 46
+VL + N KAL+RR + E+ + A D +KA + P ++ +
Sbjct: 255 IVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAI 300
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN 43
L D +N Y R Q+ + + A D KA E DP+N
Sbjct: 297 LKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN 337
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 9 NVKALYRRAQVYMEIADLILAELDIKKAIEADP 41
NVKA ++R + + + + A+ D K +E DP
Sbjct: 99 NVKAYFKRGKAHAAVWNAQEAQADFAKVLELDP 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,857,879
Number of Sequences: 62578
Number of extensions: 40953
Number of successful extensions: 117
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 99
Number of HSP's gapped (non-prelim): 19
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)