Query 034553
Match_columns 91
No_of_seqs 183 out of 1303
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 04:03:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034553.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034553hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0543 FKBP-type peptidyl-pro 99.8 4.6E-19 1E-23 123.5 9.2 78 1-78 282-359 (397)
2 COG3063 PilF Tfp pilus assembl 99.4 9.3E-13 2E-17 86.9 8.2 81 10-91 35-115 (250)
3 KOG0545 Aryl-hydrocarbon recep 99.3 1.8E-11 4E-16 81.9 8.0 73 2-74 256-329 (329)
4 KOG0553 TPR repeat-containing 99.3 4.2E-12 9E-17 86.3 4.5 61 1-61 140-200 (304)
5 KOG4234 TPR repeat-containing 99.2 6.4E-11 1.4E-15 77.5 7.4 66 1-66 159-224 (271)
6 KOG0553 TPR repeat-containing 99.1 2.1E-10 4.5E-15 78.1 6.2 85 1-86 106-190 (304)
7 PRK15359 type III secretion sy 99.0 1.9E-09 4E-14 66.7 7.3 84 2-86 50-133 (144)
8 PF00515 TPR_1: Tetratricopept 99.0 1E-09 2.2E-14 51.9 4.5 34 10-43 1-34 (34)
9 PF13414 TPR_11: TPR repeat; P 99.0 4.5E-10 9.8E-15 60.8 2.8 65 8-73 1-66 (69)
10 KOG0548 Molecular co-chaperone 98.9 1.9E-09 4.2E-14 77.8 5.9 53 2-54 62-114 (539)
11 PF13414 TPR_11: TPR repeat; P 98.9 1.2E-08 2.7E-13 55.1 7.8 41 1-41 28-69 (69)
12 PLN03088 SGT1, suppressor of 98.9 4.3E-09 9.3E-14 73.6 7.2 59 2-60 62-120 (356)
13 PRK15359 type III secretion sy 98.9 7.6E-09 1.6E-13 64.0 7.0 59 1-59 83-141 (144)
14 PF13371 TPR_9: Tetratricopept 98.9 3.8E-09 8.3E-14 57.6 4.7 51 2-52 21-71 (73)
15 PF07719 TPR_2: Tetratricopept 98.9 7.8E-09 1.7E-13 48.6 5.2 34 10-43 1-34 (34)
16 PF13432 TPR_16: Tetratricopep 98.9 5E-09 1.1E-13 56.1 4.8 57 15-72 2-58 (65)
17 PF14853 Fis1_TPR_C: Fis1 C-te 98.9 4.2E-08 9.1E-13 51.3 7.7 49 11-59 2-50 (53)
18 KOG0546 HSP90 co-chaperone CPR 98.8 1.7E-08 3.8E-13 70.2 7.0 72 2-73 301-372 (372)
19 PLN03088 SGT1, suppressor of 98.8 3.2E-08 6.9E-13 69.2 8.4 77 1-78 27-103 (356)
20 PF13428 TPR_14: Tetratricopep 98.8 1.8E-08 3.8E-13 50.5 5.3 43 10-52 1-43 (44)
21 PRK10370 formate-dependent nit 98.8 3.3E-08 7.2E-13 64.1 7.7 84 2-86 65-151 (198)
22 PRK11189 lipoprotein NlpI; Pro 98.8 6E-08 1.3E-12 66.1 7.9 72 2-74 90-161 (296)
23 KOG0547 Translocase of outer m 98.7 4E-08 8.6E-13 71.0 7.0 80 1-81 385-464 (606)
24 KOG0548 Molecular co-chaperone 98.7 2.1E-08 4.5E-13 72.6 5.5 56 2-57 418-473 (539)
25 PF14559 TPR_19: Tetratricopep 98.7 1.3E-08 2.8E-13 54.8 3.3 51 2-52 17-67 (68)
26 TIGR00990 3a0801s09 mitochondr 98.7 7.8E-08 1.7E-12 71.0 7.6 85 2-87 391-475 (615)
27 TIGR02552 LcrH_SycD type III s 98.7 3.8E-07 8.2E-12 54.8 9.4 72 2-74 9-80 (135)
28 PF13431 TPR_17: Tetratricopep 98.7 1.1E-08 2.3E-13 48.9 1.7 31 1-31 4-34 (34)
29 KOG0550 Molecular chaperone (D 98.7 5.1E-08 1.1E-12 69.2 5.3 63 1-64 312-374 (486)
30 KOG0376 Serine-threonine phosp 98.6 3.6E-08 7.8E-13 70.7 4.2 62 1-62 63-124 (476)
31 PLN02789 farnesyltranstransfer 98.6 1.6E-07 3.6E-12 65.0 7.1 88 2-89 63-152 (320)
32 TIGR02552 LcrH_SycD type III s 98.6 2.6E-07 5.5E-12 55.5 6.9 75 2-77 43-117 (135)
33 COG3063 PilF Tfp pilus assembl 98.6 1.9E-07 4.2E-12 62.0 6.2 86 1-87 60-147 (250)
34 KOG0624 dsRNA-activated protei 98.6 1.1E-07 2.4E-12 66.7 5.2 76 2-78 64-139 (504)
35 PRK12370 invasion protein regu 98.6 4.1E-07 8.9E-12 66.7 8.3 62 2-63 330-391 (553)
36 KOG0624 dsRNA-activated protei 98.6 1.5E-07 3.3E-12 66.1 5.7 61 2-62 333-393 (504)
37 PRK15363 pathogenicity island 98.6 4E-07 8.7E-12 57.3 6.9 72 3-75 62-133 (157)
38 PF13432 TPR_16: Tetratricopep 98.5 4E-07 8.6E-12 48.6 5.8 43 2-44 23-65 (65)
39 PF13181 TPR_8: Tetratricopept 98.5 2.7E-07 5.9E-12 43.3 4.4 33 11-43 2-34 (34)
40 PLN02789 farnesyltranstransfer 98.5 6.3E-07 1.4E-11 62.1 7.8 86 2-87 134-225 (320)
41 PRK09782 bacteriophage N4 rece 98.5 5.9E-07 1.3E-11 69.9 8.0 85 2-87 635-719 (987)
42 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 9.7E-07 2.1E-11 63.4 8.3 69 4-73 69-140 (453)
43 COG4235 Cytochrome c biogenesi 98.5 5E-07 1.1E-11 61.7 6.1 56 3-58 149-204 (287)
44 TIGR00990 3a0801s09 mitochondr 98.5 1.2E-06 2.6E-11 64.8 8.4 76 2-78 357-432 (615)
45 KOG4626 O-linked N-acetylgluco 98.4 1.1E-06 2.5E-11 65.5 7.7 86 1-87 311-396 (966)
46 PRK10370 formate-dependent nit 98.4 1.5E-06 3.3E-11 56.4 7.3 76 2-78 99-177 (198)
47 PRK11189 lipoprotein NlpI; Pro 98.4 2E-06 4.3E-11 58.7 8.2 82 5-87 58-140 (296)
48 KOG4648 Uncharacterized conser 98.4 3.8E-07 8.2E-12 64.2 4.4 56 2-57 157-212 (536)
49 KOG1126 DNA-binding cell divis 98.4 6.2E-07 1.4E-11 66.3 5.6 75 1-76 480-554 (638)
50 PRK12370 invasion protein regu 98.4 1.5E-06 3.2E-11 63.8 7.4 87 1-88 286-381 (553)
51 PRK15179 Vi polysaccharide bio 98.4 2.9E-06 6.2E-11 64.1 8.8 84 2-86 112-195 (694)
52 cd00189 TPR Tetratricopeptide 98.4 7.2E-06 1.6E-10 44.1 8.3 62 2-63 26-87 (100)
53 PRK09782 bacteriophage N4 rece 98.3 2.5E-06 5.5E-11 66.5 8.0 86 2-89 602-687 (987)
54 PRK15179 Vi polysaccharide bio 98.3 2.9E-06 6.2E-11 64.1 8.0 76 1-77 145-220 (694)
55 COG5010 TadD Flp pilus assembl 98.3 4.1E-06 8.9E-11 56.3 7.9 81 7-88 97-177 (257)
56 COG5010 TadD Flp pilus assembl 98.3 2.6E-06 5.7E-11 57.2 6.1 65 2-66 126-190 (257)
57 PRK15174 Vi polysaccharide exp 98.2 7.1E-06 1.5E-10 61.5 8.1 74 2-76 276-349 (656)
58 TIGR02795 tol_pal_ybgF tol-pal 98.2 1.5E-05 3.3E-10 46.2 7.7 75 3-78 29-109 (119)
59 KOG1155 Anaphase-promoting com 98.2 9.8E-06 2.1E-10 58.6 7.8 72 1-73 389-460 (559)
60 TIGR02521 type_IV_pilW type IV 98.2 1.2E-05 2.5E-10 50.8 7.1 70 2-72 57-126 (234)
61 PF13429 TPR_15: Tetratricopep 98.2 8.8E-06 1.9E-10 54.7 6.8 79 7-86 143-221 (280)
62 smart00028 TPR Tetratricopepti 98.2 4.8E-06 1E-10 36.9 3.9 33 11-43 2-34 (34)
63 PF13174 TPR_6: Tetratricopept 98.2 6.9E-06 1.5E-10 37.9 4.5 33 11-43 1-33 (33)
64 TIGR02917 PEP_TPR_lipo putativ 98.2 1.1E-05 2.4E-10 59.8 7.5 85 2-88 762-846 (899)
65 PF06552 TOM20_plant: Plant sp 98.1 1.4E-05 3E-10 51.5 6.7 64 2-65 61-135 (186)
66 KOG0547 Translocase of outer m 98.1 1E-05 2.2E-10 59.0 6.7 62 1-62 174-236 (606)
67 PF12895 Apc3: Anaphase-promot 98.1 2.1E-06 4.5E-11 48.1 2.0 63 2-65 15-79 (84)
68 PRK15174 Vi polysaccharide exp 98.1 1.6E-05 3.5E-10 59.6 7.0 85 2-87 238-326 (656)
69 PRK10803 tol-pal system protei 98.1 3.6E-05 7.7E-10 52.2 7.9 76 3-79 170-251 (263)
70 PRK15363 pathogenicity island 98.0 8.5E-05 1.9E-09 46.9 8.7 73 3-76 27-100 (157)
71 cd00189 TPR Tetratricopeptide 98.0 0.0002 4.3E-09 38.3 9.1 64 12-76 2-65 (100)
72 KOG4626 O-linked N-acetylgluco 98.0 2.1E-05 4.7E-10 58.9 6.3 62 2-63 346-407 (966)
73 TIGR02521 type_IV_pilW type IV 98.0 7.3E-05 1.6E-09 47.1 7.9 79 9-88 30-108 (234)
74 PRK10049 pgaA outer membrane p 98.0 4.6E-05 9.9E-10 58.0 8.0 73 2-75 385-457 (765)
75 TIGR02917 PEP_TPR_lipo putativ 98.0 3.7E-05 7.9E-10 57.1 7.3 87 2-90 796-882 (899)
76 KOG1125 TPR repeat-containing 98.0 4.5E-05 9.7E-10 56.1 7.4 70 2-72 311-380 (579)
77 PRK02603 photosystem I assembl 98.0 6.4E-05 1.4E-09 47.3 7.4 72 5-77 30-104 (172)
78 CHL00033 ycf3 photosystem I as 98.0 7.6E-05 1.6E-09 46.7 7.5 56 2-57 61-119 (168)
79 PF13176 TPR_7: Tetratricopept 97.9 9.7E-06 2.1E-10 38.8 2.5 29 12-40 1-29 (36)
80 PF14559 TPR_19: Tetratricopep 97.9 4.8E-05 1E-09 40.5 5.6 54 20-74 1-54 (68)
81 PRK10049 pgaA outer membrane p 97.9 5.1E-05 1.1E-09 57.8 7.6 82 2-85 75-156 (765)
82 TIGR03302 OM_YfiO outer membra 97.9 9.8E-05 2.1E-09 48.2 8.0 44 2-45 59-105 (235)
83 KOG1128 Uncharacterized conser 97.9 3.9E-05 8.5E-10 57.8 6.2 62 2-63 511-572 (777)
84 KOG1126 DNA-binding cell divis 97.8 0.00011 2.4E-09 54.8 7.5 45 1-45 514-558 (638)
85 PF13371 TPR_9: Tetratricopept 97.8 0.00018 4E-09 38.7 6.7 59 17-76 2-60 (73)
86 KOG0550 Molecular chaperone (D 97.8 7.6E-05 1.6E-09 53.5 6.3 62 2-63 275-340 (486)
87 KOG4234 TPR repeat-containing 97.8 0.00014 2.9E-09 48.2 7.0 68 11-79 135-202 (271)
88 TIGR03302 OM_YfiO outer membra 97.8 0.00024 5.2E-09 46.3 8.3 75 4-79 27-104 (235)
89 KOG1155 Anaphase-promoting com 97.8 0.00026 5.6E-09 51.5 8.7 72 1-73 423-494 (559)
90 PRK11906 transcriptional regul 97.8 0.00013 2.9E-09 52.7 7.2 63 1-63 329-391 (458)
91 PRK11447 cellulose synthase su 97.8 0.00015 3.3E-09 57.4 8.0 57 6-62 599-655 (1157)
92 TIGR02795 tol_pal_ybgF tol-pal 97.8 8.8E-05 1.9E-09 43.0 5.1 50 2-51 65-117 (119)
93 KOG0543 FKBP-type peptidyl-pro 97.8 0.00024 5.1E-09 50.6 8.1 73 10-83 257-329 (397)
94 PF14561 TPR_20: Tetratricopep 97.7 0.00014 3.1E-09 41.7 5.7 62 2-63 14-77 (90)
95 KOG1174 Anaphase-promoting com 97.7 0.00015 3.3E-09 52.2 6.9 89 1-90 325-413 (564)
96 KOG3364 Membrane protein invol 97.7 0.00016 3.5E-09 44.7 6.1 52 8-59 69-120 (149)
97 PRK11447 cellulose synthase su 97.7 0.00014 3E-09 57.6 7.2 73 2-75 629-701 (1157)
98 PRK02603 photosystem I assembl 97.7 0.00012 2.6E-09 46.0 5.7 58 2-59 61-121 (172)
99 PF13429 TPR_15: Tetratricopep 97.7 3.3E-05 7.1E-10 51.9 3.2 55 8-62 212-266 (280)
100 KOG0551 Hsp90 co-chaperone CNS 97.7 5.9E-05 1.3E-09 52.8 4.4 44 1-44 144-187 (390)
101 PRK11788 tetratricopeptide rep 97.7 0.00016 3.6E-09 50.1 6.6 61 2-62 206-267 (389)
102 COG4235 Cytochrome c biogenesi 97.7 0.00014 3.1E-09 49.8 5.7 51 2-52 219-269 (287)
103 PF13424 TPR_12: Tetratricopep 97.7 0.00014 3.1E-09 39.8 4.7 65 7-72 2-73 (78)
104 PLN03098 LPA1 LOW PSII ACCUMUL 97.6 6.7E-05 1.5E-09 54.1 4.0 39 1-39 100-141 (453)
105 KOG4162 Predicted calmodulin-b 97.6 8.7E-05 1.9E-09 56.2 4.4 62 2-63 710-773 (799)
106 KOG2076 RNA polymerase III tra 97.6 0.00017 3.6E-09 55.4 5.7 65 8-73 447-511 (895)
107 KOG1173 Anaphase-promoting com 97.6 0.00019 4.1E-09 53.0 5.6 56 1-56 480-535 (611)
108 COG4783 Putative Zn-dependent 97.5 0.0005 1.1E-08 50.0 7.2 65 2-66 366-430 (484)
109 PRK10153 DNA-binding transcrip 97.5 0.00076 1.7E-08 49.7 7.9 71 5-77 415-485 (517)
110 KOG1125 TPR repeat-containing 97.5 0.00023 4.9E-09 52.5 5.1 63 2-64 456-518 (579)
111 CHL00033 ycf3 photosystem I as 97.4 0.0016 3.6E-08 40.6 7.8 67 10-77 35-104 (168)
112 PRK11788 tetratricopeptide rep 97.4 0.00072 1.6E-08 46.9 6.7 36 3-38 62-97 (389)
113 PRK10153 DNA-binding transcrip 97.4 0.00022 4.9E-09 52.4 4.2 44 1-45 445-488 (517)
114 KOG4555 TPR repeat-containing 97.4 0.00087 1.9E-08 41.7 5.8 42 1-42 68-109 (175)
115 TIGR00540 hemY_coli hemY prote 97.4 0.00075 1.6E-08 47.9 6.3 71 2-74 325-399 (409)
116 KOG4642 Chaperone-dependent E3 97.4 0.00047 1E-08 46.5 4.8 52 2-53 36-87 (284)
117 PRK14720 transcript cleavage f 97.3 0.0018 3.8E-08 50.6 8.4 52 6-57 112-163 (906)
118 PRK10747 putative protoheme IX 97.3 0.0014 3E-08 46.5 7.2 68 3-72 321-388 (398)
119 KOG2076 RNA polymerase III tra 97.3 0.0024 5.1E-08 49.4 8.2 61 2-62 165-225 (895)
120 KOG4642 Chaperone-dependent E3 97.3 0.00038 8.2E-09 47.0 3.6 60 1-60 69-133 (284)
121 cd05804 StaR_like StaR_like; a 97.2 0.0026 5.5E-08 43.7 7.5 60 4-63 108-167 (355)
122 PF12895 Apc3: Anaphase-promot 97.2 0.00041 8.9E-09 38.7 2.9 34 3-36 51-84 (84)
123 KOG1156 N-terminal acetyltrans 97.2 0.0014 3.1E-08 49.2 6.4 61 2-62 67-127 (700)
124 PF06552 TOM20_plant: Plant sp 97.2 0.0037 8.1E-08 40.4 7.5 57 3-59 18-84 (186)
125 PRK15331 chaperone protein Sic 97.2 0.0034 7.4E-08 39.9 7.2 68 4-72 31-98 (165)
126 KOG4162 Predicted calmodulin-b 97.2 0.0012 2.6E-08 50.3 5.9 61 4-64 678-738 (799)
127 PRK14574 hmsH outer membrane p 97.2 0.0022 4.7E-08 49.7 7.2 34 17-50 109-142 (822)
128 KOG1127 TPR repeat-containing 97.1 0.0017 3.7E-08 51.0 6.5 76 1-76 27-105 (1238)
129 PF13431 TPR_17: Tetratricopep 97.1 0.00056 1.2E-08 32.2 2.6 31 33-63 2-32 (34)
130 PF04733 Coatomer_E: Coatomer 97.1 0.0011 2.5E-08 45.4 4.9 55 6-60 197-251 (290)
131 KOG4648 Uncharacterized conser 97.1 0.0022 4.8E-08 45.6 6.2 61 2-62 123-183 (536)
132 COG4976 Predicted methyltransf 97.1 0.00047 1E-08 46.4 2.7 44 1-44 20-63 (287)
133 COG1729 Uncharacterized protei 97.1 0.005 1.1E-07 41.9 7.7 69 9-78 177-248 (262)
134 PF12569 NARP1: NMDA receptor- 97.1 0.0023 4.9E-08 47.3 6.4 71 2-74 220-290 (517)
135 KOG0376 Serine-threonine phosp 97.1 0.00028 6.1E-09 51.1 1.6 44 1-44 29-72 (476)
136 PRK11906 transcriptional regul 97.0 0.00092 2E-08 48.5 4.0 44 1-44 363-406 (458)
137 PF10516 SHNi-TPR: SHNi-TPR; 97.0 0.0017 3.8E-08 31.5 3.8 29 11-39 2-30 (38)
138 COG2956 Predicted N-acetylgluc 97.0 0.0026 5.7E-08 44.7 5.8 73 1-74 205-278 (389)
139 PF03704 BTAD: Bacterial trans 97.0 0.013 2.9E-07 35.5 8.5 57 9-65 61-117 (146)
140 KOG3824 Huntingtin interacting 96.9 0.0025 5.4E-08 44.8 5.2 60 2-61 142-201 (472)
141 PRK10803 tol-pal system protei 96.9 0.006 1.3E-07 41.4 7.0 47 7-53 214-260 (263)
142 COG4785 NlpI Lipoprotein NlpI, 96.9 0.0017 3.7E-08 43.6 4.2 43 2-44 125-167 (297)
143 KOG2003 TPR repeat-containing 96.9 0.0045 9.7E-08 45.6 6.5 62 2-63 516-577 (840)
144 KOG1308 Hsp70-interacting prot 96.9 0.00027 5.9E-09 49.6 0.2 58 2-60 174-231 (377)
145 KOG1308 Hsp70-interacting prot 96.9 0.0022 4.7E-08 45.2 4.5 60 1-60 139-198 (377)
146 cd05804 StaR_like StaR_like; a 96.9 0.0025 5.5E-08 43.7 4.9 62 2-63 140-205 (355)
147 PRK10941 hypothetical protein; 96.9 0.0052 1.1E-07 41.9 6.3 48 2-49 207-254 (269)
148 COG4785 NlpI Lipoprotein NlpI, 96.8 0.0019 4.1E-08 43.4 3.9 44 1-44 90-133 (297)
149 PF12688 TPR_5: Tetratrico pep 96.8 0.011 2.4E-07 35.7 7.0 63 11-74 2-67 (120)
150 PF07720 TPR_3: Tetratricopept 96.8 0.0085 1.8E-07 28.7 5.1 34 10-43 1-36 (36)
151 PF13525 YfiO: Outer membrane 96.8 0.017 3.7E-07 37.4 8.2 69 9-78 4-75 (203)
152 PF13374 TPR_10: Tetratricopep 96.8 0.0059 1.3E-07 29.0 4.6 29 11-39 3-31 (42)
153 PRK10747 putative protoheme IX 96.8 0.013 2.9E-07 41.6 8.1 62 2-63 144-206 (398)
154 PF13424 TPR_12: Tetratricopep 96.8 0.0014 3E-08 35.8 2.5 32 8-39 44-75 (78)
155 KOG2002 TPR-containing nuclear 96.8 0.0065 1.4E-07 47.5 6.8 57 2-58 333-390 (1018)
156 PRK10866 outer membrane biogen 96.7 0.003 6.6E-08 42.2 4.5 43 3-45 59-104 (243)
157 KOG2002 TPR-containing nuclear 96.7 0.0054 1.2E-07 47.9 6.2 78 8-86 305-383 (1018)
158 TIGR00540 hemY_coli hemY prote 96.7 0.0072 1.6E-07 43.0 6.6 79 8-89 261-345 (409)
159 KOG1129 TPR repeat-containing 96.7 0.0018 3.8E-08 45.8 3.2 79 8-87 393-471 (478)
160 PRK14574 hmsH outer membrane p 96.7 0.014 3E-07 45.4 8.3 70 6-76 412-481 (822)
161 PRK15331 chaperone protein Sic 96.7 0.0054 1.2E-07 39.0 5.0 41 5-45 66-106 (165)
162 PF09295 ChAPs: ChAPs (Chs5p-A 96.7 0.007 1.5E-07 43.4 6.1 64 2-65 226-289 (395)
163 PRK10866 outer membrane biogen 96.6 0.032 6.8E-07 37.4 8.8 70 8-78 30-102 (243)
164 KOG1127 TPR repeat-containing 96.6 0.005 1.1E-07 48.5 5.4 62 2-63 588-649 (1238)
165 PF13512 TPR_18: Tetratricopep 96.5 0.03 6.5E-07 34.8 7.4 39 7-45 44-82 (142)
166 PRK14720 transcript cleavage f 96.5 0.0065 1.4E-07 47.6 5.3 42 4-45 25-66 (906)
167 PF12688 TPR_5: Tetratrico pep 96.5 0.016 3.4E-07 35.0 5.9 56 8-63 36-94 (120)
168 TIGR03504 FimV_Cterm FimV C-te 96.4 0.012 2.7E-07 29.4 4.4 25 14-38 3-27 (44)
169 PF13525 YfiO: Outer membrane 96.4 0.045 9.8E-07 35.4 8.1 38 7-44 39-76 (203)
170 PF13512 TPR_18: Tetratricopep 96.3 0.0062 1.3E-07 37.9 3.6 46 3-48 74-137 (142)
171 KOG1310 WD40 repeat protein [G 96.3 0.0046 1E-07 46.1 3.4 58 2-59 437-494 (758)
172 PF09976 TPR_21: Tetratricopep 96.3 0.033 7.2E-07 34.0 6.9 59 5-63 40-104 (145)
173 PF12569 NARP1: NMDA receptor- 96.2 0.037 8.1E-07 41.0 7.8 48 7-54 35-82 (517)
174 KOG3060 Uncharacterized conser 96.2 0.071 1.5E-06 36.5 8.3 59 3-61 147-205 (289)
175 KOG0551 Hsp90 co-chaperone CNS 96.2 0.026 5.5E-07 39.9 6.3 37 9-45 118-154 (390)
176 KOG4555 TPR repeat-containing 96.1 0.057 1.2E-06 33.8 7.0 53 10-62 43-95 (175)
177 KOG1174 Anaphase-promoting com 96.1 0.02 4.2E-07 41.7 5.7 44 14-57 475-518 (564)
178 KOG2796 Uncharacterized conser 96.1 0.069 1.5E-06 37.0 8.0 76 2-77 278-356 (366)
179 PF14863 Alkyl_sulf_dimr: Alky 96.1 0.09 2E-06 32.6 7.8 54 9-62 69-122 (141)
180 KOG3081 Vesicle coat complex C 96.0 0.057 1.2E-06 37.1 7.2 54 7-60 204-257 (299)
181 KOG4507 Uncharacterized conser 96.0 0.011 2.5E-07 44.6 4.0 54 2-55 668-721 (886)
182 KOG0545 Aryl-hydrocarbon recep 95.9 0.03 6.5E-07 38.3 5.6 76 4-80 224-299 (329)
183 COG2912 Uncharacterized conser 95.9 0.025 5.5E-07 38.6 5.1 45 2-46 207-251 (269)
184 COG4783 Putative Zn-dependent 95.8 0.093 2E-06 38.5 8.0 70 7-77 303-372 (484)
185 PF07721 TPR_4: Tetratricopept 95.7 0.02 4.3E-07 25.1 2.7 24 11-34 2-25 (26)
186 KOG2396 HAT (Half-A-TPR) repea 95.3 0.11 2.4E-06 38.5 7.0 61 2-62 131-192 (568)
187 PF09976 TPR_21: Tetratricopep 95.3 0.084 1.8E-06 32.2 5.5 53 10-63 85-137 (145)
188 KOG1173 Anaphase-promoting com 95.2 0.078 1.7E-06 39.7 6.1 61 3-63 305-365 (611)
189 KOG0495 HAT repeat protein [RN 95.2 0.041 8.8E-07 42.2 4.6 59 2-60 677-735 (913)
190 PF09295 ChAPs: ChAPs (Chs5p-A 95.2 0.019 4.1E-07 41.2 2.7 42 2-43 260-301 (395)
191 KOG2003 TPR repeat-containing 94.8 0.15 3.2E-06 37.9 6.4 55 8-62 556-610 (840)
192 KOG3824 Huntingtin interacting 94.7 0.34 7.4E-06 34.4 7.7 68 13-81 119-186 (472)
193 KOG2053 Mitochondrial inherita 94.6 0.19 4.1E-06 39.5 6.9 84 3-90 36-119 (932)
194 KOG1156 N-terminal acetyltrans 94.5 0.11 2.4E-06 39.5 5.3 75 2-77 33-107 (700)
195 KOG1128 Uncharacterized conser 94.4 0.071 1.5E-06 40.9 4.2 70 2-72 545-614 (777)
196 PF08424 NRDE-2: NRDE-2, neces 94.3 0.45 9.8E-06 33.1 7.8 76 2-78 11-98 (321)
197 KOG1840 Kinesin light chain [C 94.2 0.15 3.3E-06 37.8 5.5 58 6-63 279-344 (508)
198 KOG3060 Uncharacterized conser 94.2 0.59 1.3E-05 32.1 7.9 42 7-48 83-124 (289)
199 PF03704 BTAD: Bacterial trans 94.2 0.12 2.7E-06 31.3 4.3 37 2-38 88-124 (146)
200 KOG0530 Protein farnesyltransf 94.1 0.28 6E-06 33.9 6.2 84 2-85 69-153 (318)
201 KOG1129 TPR repeat-containing 94.1 0.63 1.4E-05 33.4 8.1 66 9-75 255-320 (478)
202 COG1729 Uncharacterized protei 94.1 0.36 7.8E-06 33.0 6.7 48 6-53 211-258 (262)
203 COG4105 ComL DNA uptake lipopr 94.0 0.9 2E-05 30.9 8.5 69 9-78 33-104 (254)
204 PF12862 Apc5: Anaphase-promot 93.3 0.27 5.7E-06 28.0 4.4 34 9-42 40-73 (94)
205 COG3629 DnrI DNA-binding trans 92.9 0.71 1.5E-05 31.9 6.7 63 8-71 151-213 (280)
206 KOG3785 Uncharacterized conser 92.9 0.64 1.4E-05 33.7 6.6 55 11-65 58-112 (557)
207 PF12968 DUF3856: Domain of Un 92.9 0.28 6.1E-06 30.1 4.2 31 9-39 99-129 (144)
208 KOG0495 HAT repeat protein [RN 92.7 0.51 1.1E-05 36.5 6.2 69 4-74 811-879 (913)
209 PF05843 Suf: Suppressor of fo 92.1 0.83 1.8E-05 31.1 6.3 73 3-76 28-101 (280)
210 COG5191 Uncharacterized conser 92.0 0.094 2E-06 37.1 1.6 53 2-54 133-186 (435)
211 PF09613 HrpB1_HrpK: Bacterial 92.0 1.2 2.5E-05 28.4 6.3 58 5-62 39-96 (160)
212 smart00386 HAT HAT (Half-A-TPR 92.0 0.54 1.2E-05 20.4 4.7 30 24-53 1-30 (33)
213 COG3118 Thioredoxin domain-con 92.0 1.1 2.4E-05 31.2 6.7 56 3-58 229-286 (304)
214 KOG2376 Signal recognition par 91.9 0.84 1.8E-05 34.7 6.4 52 5-56 105-158 (652)
215 KOG4151 Myosin assembly protei 91.8 0.42 9.1E-06 37.0 4.9 56 2-57 119-174 (748)
216 KOG1840 Kinesin light chain [C 91.5 1.4 3E-05 32.9 7.2 69 5-74 194-270 (508)
217 PHA02537 M terminase endonucle 91.5 0.76 1.7E-05 30.8 5.4 52 7-59 164-226 (230)
218 COG3947 Response regulator con 91.3 1.3 2.8E-05 31.2 6.5 51 10-60 279-329 (361)
219 COG4105 ComL DNA uptake lipopr 91.0 0.58 1.3E-05 31.9 4.5 40 6-45 67-106 (254)
220 COG3071 HemY Uncharacterized e 91.0 1.2 2.6E-05 32.1 6.2 60 3-63 321-380 (400)
221 PF02064 MAS20: MAS20 protein 90.5 1.3 2.8E-05 26.9 5.3 38 14-51 67-104 (121)
222 COG4700 Uncharacterized protei 90.4 2.6 5.6E-05 28.1 6.9 54 10-63 89-143 (251)
223 cd02682 MIT_AAA_Arch MIT: doma 90.2 2 4.4E-05 23.9 8.0 36 10-45 6-48 (75)
224 PRK10941 hypothetical protein; 89.1 2.7 5.9E-05 28.8 6.6 59 17-76 188-246 (269)
225 cd02683 MIT_1 MIT: domain cont 88.9 2.7 5.8E-05 23.3 7.8 30 10-39 6-35 (77)
226 PF10373 EST1_DNA_bind: Est1 D 88.6 0.99 2.1E-05 29.9 4.2 56 1-56 7-62 (278)
227 PF04184 ST7: ST7 protein; In 88.3 2.7 5.8E-05 31.5 6.4 53 11-63 260-314 (539)
228 KOG0529 Protein geranylgeranyl 88.2 2.5 5.5E-05 30.7 6.2 72 2-73 101-177 (421)
229 PF04733 Coatomer_E: Coatomer 87.8 1.8 4E-05 29.7 5.2 45 2-46 227-272 (290)
230 PF14938 SNAP: Soluble NSF att 87.6 3.2 7E-05 28.1 6.3 63 10-73 114-183 (282)
231 COG3071 HemY Uncharacterized e 87.4 4.7 0.0001 29.2 7.1 55 8-62 151-205 (400)
232 KOG2053 Mitochondrial inherita 87.2 9.5 0.00021 30.5 9.0 69 7-77 74-142 (932)
233 PF10255 Paf67: RNA polymerase 86.9 0.7 1.5E-05 33.5 2.8 32 7-38 161-192 (404)
234 cd02681 MIT_calpain7_1 MIT: do 86.8 2.7 5.8E-05 23.4 4.6 30 10-39 6-35 (76)
235 COG2956 Predicted N-acetylgluc 86.7 3.9 8.5E-05 29.2 6.2 52 12-63 182-233 (389)
236 COG3914 Spy Predicted O-linked 85.9 5.9 0.00013 30.2 7.2 49 2-50 93-142 (620)
237 KOG1914 mRNA cleavage and poly 85.8 7.8 0.00017 29.6 7.7 62 2-64 12-73 (656)
238 PF04910 Tcf25: Transcriptiona 85.6 1.8 3.8E-05 30.8 4.3 36 3-38 33-68 (360)
239 PF09986 DUF2225: Uncharacteri 85.4 3.5 7.6E-05 27.2 5.4 31 10-40 165-195 (214)
240 PF04212 MIT: MIT (microtubule 84.7 4.3 9.4E-05 21.6 7.9 30 10-39 5-34 (69)
241 KOG1310 WD40 repeat protein [G 84.7 3.1 6.7E-05 31.7 5.2 63 2-64 400-465 (758)
242 KOG2376 Signal recognition par 84.4 8.3 0.00018 29.6 7.3 57 14-74 83-139 (652)
243 PF02259 FAT: FAT domain; Int 84.3 7.4 0.00016 26.5 6.8 54 9-62 251-310 (352)
244 PF10602 RPN7: 26S proteasome 84.3 5.2 0.00011 25.5 5.6 33 10-42 36-68 (177)
245 COG4531 ZnuA ABC-type Zn2+ tra 83.8 3.8 8.2E-05 28.5 5.0 56 29-88 164-222 (318)
246 KOG2610 Uncharacterized conser 83.5 6.5 0.00014 28.5 6.2 49 15-63 180-228 (491)
247 COG5091 SGT1 Suppressor of G2 83.3 2.8 6.1E-05 29.3 4.2 51 12-63 81-131 (368)
248 PF15469 Sec5: Exocyst complex 83.0 8.7 0.00019 24.3 6.3 43 20-62 96-142 (182)
249 TIGR00985 3a0801s04tom mitocho 83.0 5.5 0.00012 25.0 5.2 38 15-52 95-133 (148)
250 PF05843 Suf: Suppressor of fo 82.8 3.7 8E-05 27.9 4.8 78 12-89 3-80 (280)
251 PLN03081 pentatricopeptide (PP 82.7 4.1 8.8E-05 31.0 5.4 36 3-38 521-556 (697)
252 cd02678 MIT_VPS4 MIT: domain c 82.3 6.2 0.00013 21.5 7.8 30 10-39 6-35 (75)
253 cd02679 MIT_spastin MIT: domai 82.0 4.6 0.0001 22.6 4.2 29 11-39 9-37 (79)
254 KOG4340 Uncharacterized conser 81.8 4.8 0.0001 28.8 5.0 66 8-74 142-207 (459)
255 KOG4056 Translocase of outer m 81.7 5.8 0.00013 24.7 4.8 37 15-51 86-122 (143)
256 TIGR02561 HrpB1_HrpK type III 81.6 7.1 0.00015 24.7 5.3 58 5-62 39-96 (153)
257 PF12854 PPR_1: PPR repeat 81.4 4 8.6E-05 18.7 4.2 27 9-35 6-32 (34)
258 smart00745 MIT Microtubule Int 81.1 6.8 0.00015 21.2 7.9 28 12-39 10-37 (77)
259 PF13041 PPR_2: PPR repeat fam 80.9 5.1 0.00011 19.6 5.8 42 9-50 2-45 (50)
260 PF08424 NRDE-2: NRDE-2, neces 80.3 11 0.00025 26.1 6.6 55 1-55 56-110 (321)
261 COG0457 NrfG FOG: TPR repeat [ 79.9 10 0.00022 22.4 6.9 38 6-43 91-128 (291)
262 PF11846 DUF3366: Domain of un 79.8 12 0.00026 23.8 6.1 35 9-43 143-177 (193)
263 KOG2581 26S proteasome regulat 79.8 6.7 0.00015 28.9 5.3 37 8-44 245-281 (493)
264 PLN03077 Protein ECB2; Provisi 79.5 7.5 0.00016 30.3 6.0 35 3-37 684-718 (857)
265 KOG4507 Uncharacterized conser 79.4 5.5 0.00012 30.8 4.9 41 4-44 277-317 (886)
266 PRK15326 type III secretion sy 78.9 9.4 0.0002 21.5 6.5 44 22-65 19-62 (80)
267 COG3118 Thioredoxin domain-con 78.5 7.5 0.00016 27.2 5.1 47 14-60 138-184 (304)
268 COG2976 Uncharacterized protei 78.2 7.4 0.00016 25.8 4.7 22 14-35 130-151 (207)
269 PRK13184 pknD serine/threonine 77.8 15 0.00033 29.6 7.2 59 7-65 549-607 (932)
270 KOG1070 rRNA processing protei 77.7 12 0.00026 31.7 6.5 41 3-43 1451-1492(1710)
271 cd00280 TRFH Telomeric Repeat 77.6 7.3 0.00016 25.6 4.6 38 18-56 119-156 (200)
272 COG4941 Predicted RNA polymera 77.5 13 0.00027 26.9 6.0 45 10-54 365-409 (415)
273 cd02684 MIT_2 MIT: domain cont 76.8 10 0.00022 20.8 7.2 29 11-39 7-35 (75)
274 PF07980 SusD: SusD family; I 76.6 7.8 0.00017 25.2 4.7 31 9-39 132-162 (266)
275 PLN03081 pentatricopeptide (PP 76.1 11 0.00024 28.8 5.9 55 9-63 493-547 (697)
276 PF12652 CotJB: CotJB protein; 76.1 11 0.00025 21.0 6.3 55 19-77 4-58 (78)
277 cd02656 MIT MIT: domain contai 75.3 11 0.00023 20.3 7.8 29 11-39 7-35 (75)
278 KOG1915 Cell cycle control pro 75.1 14 0.00031 28.0 6.0 55 8-62 71-125 (677)
279 PF10579 Rapsyn_N: Rapsyn N-te 74.3 13 0.00029 20.9 7.0 47 9-55 5-51 (80)
280 PF09230 DFF40: DNA fragmentat 74.2 1.9 4.2E-05 28.9 1.3 48 43-91 83-132 (230)
281 KOG2997 F-box protein FBX9 [Ge 73.6 10 0.00022 27.0 4.7 38 10-47 19-56 (366)
282 COG3629 DnrI DNA-binding trans 73.2 9.2 0.0002 26.5 4.5 38 2-39 179-216 (280)
283 PF07079 DUF1347: Protein of u 73.0 16 0.00035 27.4 5.8 42 19-61 471-512 (549)
284 PF14938 SNAP: Soluble NSF att 72.8 5.7 0.00012 26.9 3.4 59 10-69 195-254 (282)
285 KOG4814 Uncharacterized conser 72.7 28 0.00061 27.4 7.1 45 8-52 392-436 (872)
286 PF07079 DUF1347: Protein of u 72.7 38 0.00083 25.5 7.6 50 3-56 489-542 (549)
287 KOG1130 Predicted G-alpha GTPa 72.6 3.4 7.3E-05 30.7 2.3 31 10-40 235-265 (639)
288 PF08238 Sel1: Sel1 repeat; I 71.7 8.3 0.00018 17.4 4.1 30 10-39 1-37 (39)
289 PF11817 Foie-gras_1: Foie gra 71.2 14 0.00031 24.6 4.9 48 13-60 181-234 (247)
290 COG0457 NrfG FOG: TPR repeat [ 70.5 19 0.00041 21.1 7.0 33 10-42 167-199 (291)
291 PF04910 Tcf25: Transcriptiona 70.0 19 0.00042 25.6 5.6 37 8-44 101-138 (360)
292 COG1447 CelC Phosphotransferas 69.2 14 0.0003 21.9 4.0 34 5-38 14-47 (105)
293 COG2015 Alkyl sulfatase and re 69.0 27 0.00059 26.5 6.2 58 13-72 455-512 (655)
294 PF15015 NYD-SP12_N: Spermatog 68.8 26 0.00056 26.2 6.0 50 16-65 234-283 (569)
295 PF15015 NYD-SP12_N: Spermatog 68.7 17 0.00037 27.1 5.1 38 1-38 253-290 (569)
296 COG4455 ImpE Protein of avirul 68.7 31 0.00068 23.6 6.0 42 4-45 29-70 (273)
297 KOG2471 TPR repeat-containing 68.3 16 0.00034 27.9 4.9 46 9-54 334-379 (696)
298 cd02677 MIT_SNX15 MIT: domain 68.0 18 0.00039 19.9 7.5 30 10-39 6-35 (75)
299 COG4700 Uncharacterized protei 67.3 35 0.00076 22.9 6.7 35 9-43 159-193 (251)
300 PF02255 PTS_IIA: PTS system, 67.2 11 0.00023 21.8 3.2 32 7-38 11-42 (96)
301 cd01016 TroA Metal binding pro 66.8 30 0.00065 23.5 5.9 33 30-62 115-148 (276)
302 cd00215 PTS_IIA_lac PTS_IIA, P 66.1 16 0.00036 21.1 3.9 33 6-38 11-43 (97)
303 TIGR00823 EIIA-LAC phosphotran 66.0 16 0.00035 21.2 3.9 33 6-38 13-45 (99)
304 KOG2796 Uncharacterized conser 65.9 28 0.00061 24.5 5.5 65 12-77 254-318 (366)
305 smart00671 SEL1 Sel1-like repe 65.0 12 0.00025 16.5 3.6 29 11-39 2-34 (36)
306 PF11207 DUF2989: Protein of u 64.6 39 0.00084 22.4 7.3 53 9-62 140-196 (203)
307 PLN03077 Protein ECB2; Provisi 64.6 46 0.00099 26.1 7.1 44 19-62 666-709 (857)
308 KOG1070 rRNA processing protei 64.5 36 0.00077 29.1 6.6 73 8-81 1562-1636(1710)
309 COG4976 Predicted methyltransf 64.4 16 0.00034 25.2 4.0 57 18-75 3-59 (287)
310 KOG4340 Uncharacterized conser 64.4 13 0.00028 26.7 3.7 41 4-44 38-78 (459)
311 COG3914 Spy Predicted O-linked 63.6 35 0.00075 26.3 6.0 51 3-53 129-185 (620)
312 PF10300 DUF3808: Protein of u 62.8 50 0.0011 24.3 6.7 30 12-41 307-336 (468)
313 cd01137 PsaA Metal binding pro 61.7 38 0.00083 23.1 5.7 54 32-89 133-191 (287)
314 PF02259 FAT: FAT domain; Int 61.4 18 0.0004 24.5 4.1 41 2-42 284-341 (352)
315 KOG3785 Uncharacterized conser 61.4 44 0.00095 24.6 6.0 49 14-62 155-203 (557)
316 PF12968 DUF3856: Domain of Un 61.3 12 0.00025 23.2 2.7 30 10-39 55-84 (144)
317 PF01535 PPR: PPR repeat; Int 61.3 12 0.00027 15.6 3.1 26 13-38 3-28 (31)
318 PF02184 HAT: HAT (Half-A-TPR) 60.9 16 0.00035 16.9 2.6 19 25-43 2-20 (32)
319 PF03745 DUF309: Domain of unk 60.3 24 0.00052 18.6 5.6 40 14-53 3-43 (62)
320 PRK09591 celC cellobiose phosp 60.0 23 0.0005 20.8 3.8 33 6-38 16-48 (104)
321 cd02680 MIT_calpain7_2 MIT: do 59.7 28 0.00061 19.2 8.6 30 10-39 6-35 (75)
322 PRK04841 transcriptional regul 59.6 24 0.00053 27.5 4.9 36 8-43 729-764 (903)
323 COG3014 Uncharacterized protei 59.4 41 0.00089 24.5 5.5 29 13-41 128-156 (449)
324 PF13708 Methyltransf_27: Meth 59.3 40 0.00086 21.8 5.2 60 27-86 26-86 (194)
325 TIGR00756 PPR pentatricopeptid 58.9 15 0.00032 15.7 3.8 26 13-38 3-28 (35)
326 PF10373 EST1_DNA_bind: Est1 D 58.7 27 0.00058 23.0 4.5 46 29-74 1-46 (278)
327 PRK10454 PTS system N,N'-diace 58.2 27 0.00059 21.0 3.9 33 6-38 27-59 (115)
328 PRK15180 Vi polysaccharide bio 57.4 64 0.0014 24.8 6.4 38 2-39 315-352 (831)
329 KOG0412 Golgi transport comple 56.7 22 0.00048 27.9 4.1 72 20-91 140-238 (773)
330 PF08631 SPO22: Meiosis protei 56.5 60 0.0013 22.0 6.8 30 10-39 35-65 (278)
331 PF10300 DUF3808: Protein of u 55.0 28 0.0006 25.7 4.3 38 4-41 261-298 (468)
332 PF06051 DUF928: Domain of Unk 54.7 51 0.0011 21.3 5.1 44 13-56 134-177 (189)
333 KOG1941 Acetylcholine receptor 54.7 79 0.0017 23.4 6.3 30 11-40 207-236 (518)
334 PF13281 DUF4071: Domain of un 54.6 45 0.00098 24.1 5.2 35 16-50 311-345 (374)
335 PF09205 DUF1955: Domain of un 54.3 51 0.0011 20.8 4.8 33 7-39 117-149 (161)
336 PRK15180 Vi polysaccharide bio 53.9 56 0.0012 25.1 5.7 55 3-57 769-823 (831)
337 TIGR03549 conserved hypothetic 53.9 66 0.0014 25.4 6.2 30 16-45 611-640 (718)
338 COG3898 Uncharacterized membra 53.4 40 0.00086 25.1 4.7 41 2-42 255-295 (531)
339 TIGR03772 anch_rpt_subst ancho 53.1 56 0.0012 24.4 5.6 56 30-89 325-385 (479)
340 PF08311 Mad3_BUB1_I: Mad3/BUB 52.5 48 0.001 19.8 4.5 30 8-37 97-126 (126)
341 PF13226 DUF4034: Domain of un 52.3 42 0.00091 23.2 4.6 54 4-57 71-146 (277)
342 COG0803 LraI ABC-type metal io 51.8 68 0.0015 22.1 5.6 53 33-89 150-206 (303)
343 PF08631 SPO22: Meiosis protei 50.2 33 0.00072 23.2 3.9 26 13-38 249-274 (278)
344 KOG1464 COP9 signalosome, subu 50.1 58 0.0013 23.2 5.0 39 24-62 41-83 (440)
345 PF13281 DUF4071: Domain of un 49.9 97 0.0021 22.5 9.3 69 8-76 177-257 (374)
346 PF08969 USP8_dimer: USP8 dime 49.7 52 0.0011 19.2 4.6 30 10-39 38-67 (115)
347 KOG0030 Myosin essential light 49.5 21 0.00045 22.5 2.5 45 32-76 35-79 (152)
348 KOG1914 mRNA cleavage and poly 48.9 1.2E+02 0.0026 23.6 6.7 85 4-89 47-138 (656)
349 PLN00061 photosystem II protei 48.3 63 0.0014 20.4 4.5 36 27-62 61-97 (150)
350 PF09731 Mitofilin: Mitochondr 46.6 84 0.0018 23.7 5.8 53 6-60 519-571 (582)
351 PF14689 SPOB_a: Sensor_kinase 46.2 44 0.00096 17.4 4.1 24 15-38 28-51 (62)
352 KOG1915 Cell cycle control pro 46.1 1.3E+02 0.0029 23.1 6.5 56 2-57 99-154 (677)
353 PF14561 TPR_20: Tetratricopep 45.9 55 0.0012 18.4 5.6 35 29-63 7-41 (90)
354 KOG1585 Protein required for f 45.0 59 0.0013 22.7 4.3 65 7-73 187-251 (308)
355 PF00244 14-3-3: 14-3-3 protei 44.8 93 0.002 20.8 8.6 43 12-54 3-46 (236)
356 KOG3677 RNA polymerase I-assoc 44.5 19 0.00041 26.8 2.1 25 14-38 276-300 (525)
357 PF12739 TRAPPC-Trs85: ER-Golg 44.5 1E+02 0.0022 22.3 5.8 33 6-38 203-236 (414)
358 PF09929 DUF2161: Uncharacteri 44.1 7.6 0.00017 23.5 0.0 9 82-90 94-102 (118)
359 smart00762 Cog4 COG4 transport 44.0 18 0.00038 25.4 1.8 28 64-91 27-54 (324)
360 PRK09545 znuA high-affinity zi 44.0 1E+02 0.0022 21.4 5.6 56 30-89 159-217 (311)
361 PF12583 TPPII_N: Tripeptidyl 43.8 70 0.0015 19.9 4.2 39 11-49 77-115 (139)
362 cd01017 AdcA Metal binding pro 43.2 1E+02 0.0022 20.8 5.7 54 32-89 129-185 (282)
363 KOG2062 26S proteasome regulat 43.0 1.1E+02 0.0025 24.6 6.0 36 9-44 58-96 (929)
364 KOG1941 Acetylcholine receptor 42.7 61 0.0013 24.0 4.3 53 11-63 123-181 (518)
365 KOG0529 Protein geranylgeranyl 42.6 69 0.0015 23.6 4.6 54 2-55 137-194 (421)
366 cd09240 BRO1_Alix Protein-inte 42.6 1.2E+02 0.0026 21.4 6.8 29 10-38 255-283 (346)
367 COG5191 Uncharacterized conser 42.0 41 0.00089 24.3 3.3 42 6-47 103-144 (435)
368 PF08318 COG4: COG4 transport 41.9 21 0.00046 25.0 2.0 27 65-91 28-54 (331)
369 PF10345 Cohesin_load: Cohesin 41.7 1.6E+02 0.0034 22.5 7.0 34 9-42 58-92 (608)
370 cd01145 TroA_c Periplasmic bin 40.4 99 0.0022 19.8 6.2 56 30-89 122-180 (203)
371 PLN03218 maturation of RBCL 1; 40.2 2.2E+02 0.0047 23.7 7.8 28 12-39 581-608 (1060)
372 KOG1130 Predicted G-alpha GTPa 39.4 45 0.00098 25.1 3.3 33 11-43 276-308 (639)
373 cd09239 BRO1_HD-PTP_like Prote 39.3 1.4E+02 0.0031 21.3 7.4 28 11-38 253-280 (361)
374 KOG2709 Uncharacterized conser 38.9 44 0.00095 25.0 3.1 27 13-39 25-51 (560)
375 cd01020 TroA_b Metal binding p 38.6 1.2E+02 0.0026 20.3 6.0 56 30-89 109-167 (264)
376 PF04781 DUF627: Protein of un 38.5 88 0.0019 18.7 5.7 30 16-45 2-31 (111)
377 COG4259 Uncharacterized protei 38.3 89 0.0019 18.7 4.8 39 10-48 72-110 (121)
378 COG3898 Uncharacterized membra 38.1 1.7E+02 0.0037 22.0 6.0 51 4-55 323-373 (531)
379 PF13812 PPR_3: Pentatricopept 37.1 40 0.00086 14.3 4.4 27 12-38 3-29 (34)
380 PF04184 ST7: ST7 protein; In 37.0 55 0.0012 24.8 3.5 74 1-77 193-291 (539)
381 PRK10548 flagellar biosynthesi 36.7 97 0.0021 18.7 5.4 24 66-89 87-110 (121)
382 cd09242 BRO1_ScBro1_like Prote 36.1 88 0.0019 22.1 4.3 29 11-39 245-273 (348)
383 PRK04841 transcriptional regul 36.0 77 0.0017 24.8 4.3 29 11-39 532-560 (903)
384 PF09797 NatB_MDM20: N-acetylt 35.0 66 0.0014 22.6 3.6 41 23-63 196-236 (365)
385 COG2976 Uncharacterized protei 34.9 1.4E+02 0.003 19.9 6.8 51 12-63 91-145 (207)
386 cd08977 SusD starch binding ou 34.6 1E+02 0.0022 21.4 4.4 33 8-40 284-316 (359)
387 PF01239 PPTA: Protein prenylt 34.5 47 0.001 14.4 4.9 27 29-55 2-28 (31)
388 cd09243 BRO1_Brox_like Protein 34.4 97 0.0021 22.2 4.3 28 11-38 249-276 (353)
389 PF06957 COPI_C: Coatomer (COP 34.2 65 0.0014 23.8 3.5 43 5-47 294-337 (422)
390 PF05131 Pep3_Vps18: Pep3/Vps1 34.1 32 0.00069 21.4 1.7 18 18-35 111-128 (147)
391 PRK04778 septation ring format 33.7 1.2E+02 0.0025 23.1 4.8 36 8-43 517-553 (569)
392 PF07219 HemY_N: HemY protein 33.7 99 0.0021 17.8 6.0 29 12-40 61-89 (108)
393 COG3170 FimV Tfp pilus assembl 33.6 1.3E+02 0.0028 23.9 5.0 27 14-40 713-739 (755)
394 KOG2422 Uncharacterized conser 33.5 2.4E+02 0.0051 22.1 6.7 52 9-60 341-394 (665)
395 KOG1497 COP9 signalosome, subu 33.4 1.9E+02 0.0041 21.0 8.6 61 12-72 146-208 (399)
396 PF12309 KBP_C: KIF-1 binding 32.9 74 0.0016 22.9 3.6 37 9-45 299-344 (371)
397 KOG2471 TPR repeat-containing 32.2 1.8E+02 0.0039 22.5 5.4 30 12-41 621-650 (696)
398 PF09797 NatB_MDM20: N-acetylt 32.2 94 0.002 21.9 4.0 34 2-35 209-242 (365)
399 KOG2758 Translation initiation 31.9 1.5E+02 0.0032 21.7 4.8 35 5-39 124-158 (432)
400 KOG1118 Lysophosphatidic acid 31.8 1.6E+02 0.0035 21.1 4.9 40 2-41 98-137 (366)
401 KOG0687 26S proteasome regulat 31.1 1.3E+02 0.0028 21.9 4.4 31 10-40 104-134 (393)
402 PF04505 Dispanin: Interferon- 30.9 1E+02 0.0022 17.1 3.2 24 16-39 43-66 (82)
403 KOG2758 Translation initiation 30.6 1.9E+02 0.004 21.1 5.1 39 5-43 162-201 (432)
404 cd09247 BRO1_Alix_like_2 Prote 30.5 1.1E+02 0.0024 21.6 4.1 30 10-39 253-282 (346)
405 PF12464 Mac: Maltose acetyltr 30.2 79 0.0017 15.6 5.0 37 40-76 11-54 (55)
406 PF04010 DUF357: Protein of un 29.8 1E+02 0.0022 16.9 4.8 30 9-38 34-63 (75)
407 cd01019 ZnuA Zinc binding prot 29.8 1.8E+02 0.004 19.8 5.5 53 33-89 138-193 (286)
408 COG2912 Uncharacterized conser 29.1 95 0.0021 21.5 3.4 42 18-59 189-230 (269)
409 cd09245 BRO1_UmRIM23-like Prot 29.1 1.3E+02 0.0028 22.0 4.3 30 10-39 296-325 (413)
410 PLN03218 maturation of RBCL 1; 29.0 3.4E+02 0.0074 22.6 8.1 25 12-36 686-710 (1060)
411 cd09034 BRO1_Alix_like Protein 29.0 1.3E+02 0.0027 20.9 4.2 30 10-39 251-280 (345)
412 cd01018 ZntC Metal binding pro 28.9 1.8E+02 0.004 19.5 5.6 52 34-89 130-184 (266)
413 PF01297 TroA: Periplasmic sol 28.8 1.4E+02 0.0031 19.6 4.3 53 32-88 108-163 (256)
414 PRK09343 prefoldin subunit bet 28.3 1.4E+02 0.003 17.8 6.5 33 6-39 50-82 (121)
415 PF10938 YfdX: YfdX protein; 27.9 1.6E+02 0.0034 18.4 4.6 28 11-38 118-145 (155)
416 KOG3783 Uncharacterized conser 27.7 2.9E+02 0.0062 21.3 6.3 36 9-44 489-525 (546)
417 TIGR02508 type_III_yscG type I 27.7 1.4E+02 0.0031 17.8 3.7 46 12-62 41-86 (115)
418 COG5600 Transcription-associat 27.5 1E+02 0.0022 22.6 3.4 33 10-42 220-252 (413)
419 PF07739 TipAS: TipAS antibiot 27.2 1.3E+02 0.0028 17.1 6.3 46 26-71 37-84 (118)
420 PF08717 nsp8: nsp8 replicase; 27.2 1.9E+02 0.0041 19.1 7.3 26 25-50 14-39 (199)
421 PRK11619 lytic murein transgly 27.0 1.3E+02 0.0028 23.4 4.2 31 8-38 344-374 (644)
422 PRK10241 hydroxyacylglutathion 27.0 1.3E+02 0.0029 20.0 3.9 29 29-57 168-196 (251)
423 PF10095 DUF2333: Uncharacteri 26.9 2.3E+02 0.0049 20.4 5.0 28 12-39 246-273 (336)
424 KOG3960 Myogenic helix-loop-he 26.7 1.1E+02 0.0024 21.2 3.4 45 21-65 128-180 (284)
425 cd09241 BRO1_ScRim20-like Prot 26.7 1.6E+02 0.0034 20.9 4.3 29 10-38 237-265 (355)
426 KOG1586 Protein required for f 26.5 2.3E+02 0.0049 19.7 7.7 36 10-45 194-230 (288)
427 KOG1811 Predicted Zn2+-binding 26.3 1.7E+02 0.0037 23.3 4.6 34 10-43 587-620 (1141)
428 KOG3081 Vesicle coat complex C 26.2 2.4E+02 0.0052 19.9 6.2 33 8-40 106-138 (299)
429 KOG2300 Uncharacterized conser 26.0 2.7E+02 0.0057 21.5 5.4 30 11-40 446-475 (629)
430 PF03097 BRO1: BRO1-like domai 25.9 2E+02 0.0043 20.2 4.8 29 10-38 239-267 (377)
431 COG2987 HutU Urocanate hydrata 25.4 1.8E+02 0.0039 22.1 4.4 53 6-58 342-402 (561)
432 PF04053 Coatomer_WDAD: Coatom 25.0 1.4E+02 0.003 22.1 3.9 32 7-38 344-375 (443)
433 PHA02096 hypothetical protein 25.0 80 0.0017 17.9 2.1 43 45-88 37-79 (103)
434 cd07661 BAR_ICA69 The Bin/Amph 24.7 2.2E+02 0.0047 19.0 4.8 39 23-61 111-150 (204)
435 KOG2610 Uncharacterized conser 24.6 1.4E+02 0.0031 22.0 3.7 32 13-44 250-283 (491)
436 TIGR01987 HI0074 nucleotidyltr 24.5 93 0.002 18.8 2.5 23 23-45 2-24 (123)
437 COG0790 FOG: TPR repeat, SEL1 24.2 1.7E+02 0.0037 19.5 4.0 35 6-40 105-143 (292)
438 PLN02469 hydroxyacylglutathion 24.1 1.7E+02 0.0036 19.8 3.9 30 30-59 178-207 (258)
439 COG5345 Uncharacterized protei 23.6 2.6E+02 0.0055 20.0 4.7 30 11-40 268-297 (358)
440 COG5107 RNA14 Pre-mRNA 3'-end 23.4 3.5E+02 0.0076 20.8 6.7 44 3-46 35-78 (660)
441 KOG4459 Membrane-associated pr 23.4 1E+02 0.0022 23.2 2.8 49 11-59 134-182 (471)
442 TIGR02302 aProt_lowcomp conser 23.3 3.2E+02 0.0069 22.3 5.7 36 28-63 507-542 (851)
443 PF03130 HEAT_PBS: PBS lyase H 22.9 81 0.0018 13.3 2.5 21 17-38 6-26 (27)
444 PF04539 Sigma70_r3: Sigma-70 22.9 96 0.0021 16.4 2.2 39 23-61 3-41 (78)
445 PF13779 DUF4175: Domain of un 22.8 3.5E+02 0.0076 21.9 5.8 38 27-64 475-512 (820)
446 COG3947 Response regulator con 22.6 1.2E+02 0.0025 21.8 2.9 35 2-36 305-339 (361)
447 PF06160 EzrA: Septation ring 22.4 2.4E+02 0.0052 21.4 4.8 35 9-43 514-550 (560)
448 PF09562 RE_LlaMI: LlaMI restr 22.3 28 0.00061 23.5 -0.1 8 83-90 200-207 (271)
449 PF12793 SgrR_N: Sugar transpo 22.0 1.9E+02 0.004 17.2 3.5 27 8-34 68-94 (115)
450 PF10345 Cohesin_load: Cohesin 21.8 3.1E+02 0.0067 20.9 5.3 26 9-34 403-428 (608)
451 COG2178 Predicted RNA-binding 21.7 2.4E+02 0.0052 18.8 4.1 27 13-39 32-58 (204)
452 KOG2114 Vacuolar assembly/sort 21.7 1.1E+02 0.0025 24.8 3.0 38 5-42 362-401 (933)
453 COG4649 Uncharacterized protei 21.5 2.6E+02 0.0056 18.6 6.3 33 10-42 94-126 (221)
454 KOG4814 Uncharacterized conser 21.5 4.4E+02 0.0094 21.2 6.7 33 12-44 356-388 (872)
455 PF12075 KN_motif: KN motif; 21.3 31 0.00067 16.7 -0.0 10 79-88 2-11 (39)
456 COG4455 ImpE Protein of avirul 21.3 2.9E+02 0.0063 19.1 5.2 48 18-65 9-56 (273)
457 KOG0569 Permease of the major 21.1 2.6E+02 0.0056 21.0 4.7 34 22-55 214-247 (485)
458 PF12475 Amdo_NSP: Amdovirus n 20.9 37 0.0008 17.2 0.2 14 76-89 6-19 (48)
459 PF09311 Rab5-bind: Rabaptin-l 20.2 2E+02 0.0044 18.3 3.6 32 7-38 137-168 (181)
460 PF04652 DUF605: Vta1 like; I 20.1 2.4E+02 0.0052 19.9 4.2 20 24-43 344-364 (380)
461 PF01213 CAP_N: Adenylate cycl 20.0 1.1E+02 0.0024 21.6 2.5 64 26-89 78-147 (312)
No 1
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=4.6e-19 Score=123.50 Aligned_cols=78 Identities=38% Similarity=0.592 Sum_probs=75.0
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD 78 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~ 78 (91)
++|.++|+|+||+||||+|+..+|+|+.|+.+|+++++++|+|.+|..+|..+.++++++..+++.+|++||++.+..
T Consensus 282 kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~ 359 (397)
T KOG0543|consen 282 KVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAEE 359 (397)
T ss_pred HHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999998754
No 2
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.43 E-value=9.3e-13 Score=86.90 Aligned_cols=81 Identities=25% Similarity=0.359 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhhhcc
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVGYFA 89 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~g~f~ 89 (91)
.++...+|..|+..|++..|..-+++||++||++..++..+..+-+.+++-.-++ +.|++..+..++..+++|||||||
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~-e~YrkAlsl~p~~GdVLNNYG~FL 113 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLAD-ESYRKALSLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHH-HHHHHHHhcCCCccchhhhhhHHH
Confidence 4678889999999999999999999999999999999999999999999988775 479999999999999999999999
Q ss_pred cC
Q 034553 90 CD 91 (91)
Q Consensus 90 ~~ 91 (91)
|.
T Consensus 114 C~ 115 (250)
T COG3063 114 CA 115 (250)
T ss_pred Hh
Confidence 94
No 3
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.8e-11 Score=81.95 Aligned_cols=73 Identities=29% Similarity=0.335 Sum_probs=68.2
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR-EVKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
+|..+|+|+|||||||.|+...-+..+|..||.++|+++|.-+ .+..+|+.++.++.+.++.++-.+++||+.
T Consensus 256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~edr~~~~kmfs~ 329 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEEDRLRCRKMFSQ 329 (329)
T ss_pred HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC
Confidence 5788999999999999999999999999999999999999865 789999999999999999999999999973
No 4
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=4.2e-12 Score=86.27 Aligned_cols=61 Identities=31% Similarity=0.259 Sum_probs=56.7
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN 61 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~ 61 (91)
+||.+||.++|+|-|+|.|++.+|++++|++.|++||+|+|+|...+..|..++..+.+..
T Consensus 140 ~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 140 SALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 3789999999999999999999999999999999999999999999999999999887765
No 5
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=6.4e-11 Score=77.48 Aligned_cols=66 Identities=29% Similarity=0.316 Sum_probs=61.9
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAK 66 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~ 66 (91)
+||+++|.+.+|+.|||.+|..+..|++|+.||++.++++|...+++..+.++...+.+..++-+.
T Consensus 159 Kaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKe 224 (271)
T KOG4234|consen 159 KAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKE 224 (271)
T ss_pred hhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999888876553
No 6
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=2.1e-10 Score=78.10 Aligned_cols=85 Identities=14% Similarity=0.094 Sum_probs=74.9
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS 80 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~ 80 (91)
+||+++|.|+--|-.||.||.+||.|+.|++|++.|+.+||....+...|..+...++.+.++.. .|++.+...+....
T Consensus 106 ~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~-aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 106 EAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE-AYKKALELDPDNES 184 (304)
T ss_pred HHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH-HHHhhhccCCCcHH
Confidence 47999999999999999999999999999999999999999999999999999999999988865 48998888766554
Q ss_pred hhhhhh
Q 034553 81 VATKVG 86 (91)
Q Consensus 81 ~~~~~g 86 (91)
..++++
T Consensus 185 ~K~nL~ 190 (304)
T KOG0553|consen 185 YKSNLK 190 (304)
T ss_pred HHHHHH
Confidence 444443
No 7
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.02 E-value=1.9e-09 Score=66.69 Aligned_cols=84 Identities=12% Similarity=0.019 Sum_probs=63.3
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
++.++|.+..+|+.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.......+.....
T Consensus 50 al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi-~~~~~Al~~~p~~~~~ 128 (144)
T PRK15359 50 LVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAR-EAFQTAIKMSYADASW 128 (144)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCChHH
Confidence 567888888888888888888888888888888888888888888888888888887777764 3566666655544444
Q ss_pred hhhhh
Q 034553 82 ATKVG 86 (91)
Q Consensus 82 ~~~~g 86 (91)
.++.|
T Consensus 129 ~~~~~ 133 (144)
T PRK15359 129 SEIRQ 133 (144)
T ss_pred HHHHH
Confidence 43333
No 8
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=99.01 E-value=1e-09 Score=51.92 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQN 43 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~ 43 (91)
+++|+++|.++..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4789999999999999999999999999999974
No 9
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.97 E-value=4.5e-10 Score=60.80 Aligned_cols=65 Identities=23% Similarity=0.206 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhh
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQA-ESNKRDAKFYANMFA 73 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~mf~ 73 (91)
+++..|+.+|.+++..|+|++|+..|+++++++|++..+...+..+...++ ...+... .+.+..+
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~-~~~~al~ 66 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIE-DFEKALK 66 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHH-HHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHH-HHHHHHH
Confidence 368899999999999999999999999999999999999999999999998 6666533 4454443
No 10
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.9e-09 Score=77.84 Aligned_cols=53 Identities=19% Similarity=0.192 Sum_probs=51.2
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLK 54 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~ 54 (91)
+++++|+++|+|+|.|.++..+|+|++|+..|.++|+++|+|+.+...|..+.
T Consensus 62 ~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 62 TRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 57899999999999999999999999999999999999999999999998888
No 11
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.94 E-value=1.2e-08 Score=55.06 Aligned_cols=41 Identities=32% Similarity=0.474 Sum_probs=39.1
Q ss_pred CcccccCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHCC
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIA-DLILAELDIKKAIEADP 41 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg-~~~~A~~~~~~al~l~p 41 (91)
++|+++|+++.+|+++|.++..+| ++++|+.+++++++++|
T Consensus 28 ~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 28 KAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 368899999999999999999999 79999999999999998
No 12
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.93 E-value=4.3e-09 Score=73.60 Aligned_cols=59 Identities=20% Similarity=0.265 Sum_probs=51.4
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES 60 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 60 (91)
||+++|+++.+|+++|.+++.+|+|++|+..|+++++++|++..+...+..+...+...
T Consensus 62 Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 62 AIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred HHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 67888999999999999999999999999999999999999998888888888888554
No 13
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.91 E-value=7.6e-09 Score=63.96 Aligned_cols=59 Identities=12% Similarity=0.129 Sum_probs=53.1
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAE 59 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 59 (91)
+++.++|+++.+++++|.++..+|++++|+..|+++++++|++......+..+...+..
T Consensus 83 ~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 83 HALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT 141 (144)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999988887777666543
No 14
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.89 E-value=3.8e-09 Score=57.62 Aligned_cols=51 Identities=20% Similarity=0.341 Sum_probs=46.2
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKS 52 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~ 52 (91)
++.++|+++.+|+.+|.++..+|++++|+.+|+++++++|++..+......
T Consensus 21 ~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 21 ALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 578899999999999999999999999999999999999998877665544
No 15
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.89 E-value=7.8e-09 Score=48.57 Aligned_cols=34 Identities=32% Similarity=0.426 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQN 43 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~ 43 (91)
+++|+.+|.+++.+|++++|+..|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4789999999999999999999999999999986
No 16
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.88 E-value=5e-09 Score=56.11 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=27.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034553 15 RRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMF 72 (91)
Q Consensus 15 rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf 72 (91)
.+|.+++..|+|++|+..|+++++.+|++..++..+..+....++..++. ..+..+.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~-~~~~~a~ 58 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEAL-AYYERAL 58 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHH-HHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Confidence 34455555555555555555555555555555555555555555544443 3344433
No 17
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=98.86 E-value=4.2e-08 Score=51.33 Aligned_cols=49 Identities=18% Similarity=0.237 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAE 59 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 59 (91)
+.+|..|.+++++|+|+.|...++.+|+++|+|..+......++.++..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999999999999999998888877653
No 18
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.7e-08 Score=70.18 Aligned_cols=72 Identities=26% Similarity=0.385 Sum_probs=68.1
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFA 73 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~ 73 (91)
+++.+++..++||||+.+++.+.++++|+.++..+....|++..+...+..+.+.++++.++++..+.+||+
T Consensus 301 ~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s 372 (372)
T KOG0546|consen 301 ALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQKKALSKMFS 372 (372)
T ss_pred ccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence 466789999999999999999999999999999999999999999999999999999999999988999884
No 19
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.82 E-value=3.2e-08 Score=69.23 Aligned_cols=77 Identities=23% Similarity=0.196 Sum_probs=66.3
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD 78 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~ 78 (91)
+||+++|+++.+|+.+|.+++.+|++++|+.++++++.++|++..+...+..+...++++.++.. .+.+.....+..
T Consensus 27 ~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~-~~~~al~l~P~~ 103 (356)
T PLN03088 27 QAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA-ALEKGASLAPGD 103 (356)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHhCCCC
Confidence 36889999999999999999999999999999999999999999999999999888888877644 456655554443
No 20
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.82 E-value=1.8e-08 Score=50.51 Aligned_cols=43 Identities=21% Similarity=0.188 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKS 52 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~ 52 (91)
+.+++.+|.++..+|++++|+..|+++++.+|+|.+++..+..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3578999999999999999999999999999999999887764
No 21
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.81 E-value=3.3e-08 Score=64.13 Aligned_cols=84 Identities=11% Similarity=0.077 Sum_probs=64.5
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHH--HHHHHHHHHHhhhcccCC
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLK-QLQAES--NKRDAKFYANMFARVTKD 78 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~-~~~~~~--~~~~~~~~~~mf~~~~~~ 78 (91)
+|+.+|+++.+|+.+|.++..+|++++|+..|+++++++|++.++...+..+. ...+.. .+. ...+.+.....+..
T Consensus 65 ~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A-~~~l~~al~~dP~~ 143 (198)
T PRK10370 65 KIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT-REMIDKALALDANE 143 (198)
T ss_pred HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH-HHHHHHHHHhCCCC
Confidence 57889999999999999999999999999999999999999999998888764 343332 232 34566666666655
Q ss_pred chhhhhhh
Q 034553 79 SSVATKVG 86 (91)
Q Consensus 79 ~~~~~~~g 86 (91)
......+|
T Consensus 144 ~~al~~LA 151 (198)
T PRK10370 144 VTALMLLA 151 (198)
T ss_pred hhHHHHHH
Confidence 55544443
No 22
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.75 E-value=6e-08 Score=66.15 Aligned_cols=72 Identities=10% Similarity=-0.026 Sum_probs=52.5
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
+|+++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++.. .+.+....
T Consensus 90 Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~-~~~~al~~ 161 (296)
T PRK11189 90 ALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQD-DLLAFYQD 161 (296)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHh
Confidence 5677888888888888888888888888888888888888888777777776666666555532 34444433
No 23
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=4e-08 Score=71.05 Aligned_cols=80 Identities=20% Similarity=0.150 Sum_probs=60.7
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS 80 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~ 80 (91)
+|.++||.|+..||.||+.++-+++|++|+.||+++..|+|++.-...++.-+.-+.....+.++ .|...-.+++.-.+
T Consensus 385 ~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~-~Fee~kkkFP~~~E 463 (606)
T KOG0547|consen 385 KAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMK-TFEEAKKKFPNCPE 463 (606)
T ss_pred HHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCCch
Confidence 36789999999999999999999999999999999999999997666665555555554444332 35555555555544
Q ss_pred h
Q 034553 81 V 81 (91)
Q Consensus 81 ~ 81 (91)
+
T Consensus 464 v 464 (606)
T KOG0547|consen 464 V 464 (606)
T ss_pred H
Confidence 4
No 24
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.1e-08 Score=72.61 Aligned_cols=56 Identities=21% Similarity=0.199 Sum_probs=50.7
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQ 57 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~ 57 (91)
+|++||++++||+|.|.++..+.+|+.|++.|++++++||++.++...+.++...+
T Consensus 418 ~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 418 CIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 67889999999999999999999999999999999999999999999988888765
No 25
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.73 E-value=1.3e-08 Score=54.77 Aligned_cols=51 Identities=25% Similarity=0.265 Sum_probs=41.0
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKS 52 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~ 52 (91)
+++.+|++..+++..|.+++..|++++|...+++++..+|+++.+...+..
T Consensus 17 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 17 ALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 467788888888888888888888888888888888888887777666554
No 26
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.70 E-value=7.8e-08 Score=71.01 Aligned_cols=85 Identities=15% Similarity=0.139 Sum_probs=57.7
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
+|+++|+++.+|+.+|.+++.+|++++|+.+|+++++++|++..+...+..+....+...++. ..+++.....+....+
T Consensus 391 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~-~~~~~al~~~P~~~~~ 469 (615)
T TIGR00990 391 ALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSM-ATFRRCKKNFPEAPDV 469 (615)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHhCCCChHH
Confidence 466777778888888888888888888888888888888877777777777766666666553 3455555554544445
Q ss_pred hhhhhh
Q 034553 82 ATKVGY 87 (91)
Q Consensus 82 ~~~~g~ 87 (91)
.+.+|.
T Consensus 470 ~~~lg~ 475 (615)
T TIGR00990 470 YNYYGE 475 (615)
T ss_pred HHHHHH
Confidence 555543
No 27
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.70 E-value=3.8e-07 Score=54.77 Aligned_cols=72 Identities=19% Similarity=0.055 Sum_probs=51.3
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
++.++|++..+.+.+|.+++..|++++|+..+++++.++|.+..+...+..+....++..++.. .+......
T Consensus 9 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~-~~~~~~~~ 80 (135)
T TIGR02552 9 LLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAID-AYALAAAL 80 (135)
T ss_pred HHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhc
Confidence 5677777777788888888888888888888888888888777777777777777766665533 33443333
No 28
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.68 E-value=1.1e-08 Score=48.86 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=28.9
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHH
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAEL 31 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~ 31 (91)
+||+++|+|+.+|+.+|.++...|++++|++
T Consensus 4 kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 4 KAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4799999999999999999999999999963
No 29
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=5.1e-08 Score=69.25 Aligned_cols=63 Identities=24% Similarity=0.303 Sum_probs=57.2
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRD 64 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~ 64 (91)
+|+.+||..+|||.+||.+++.+++|++|++||+++.+++.+ .+++..+.+++..++..++++
T Consensus 312 ~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRkd 374 (486)
T KOG0550|consen 312 EALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRKD 374 (486)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhhh
Confidence 478999999999999999999999999999999999999877 889999999999888877643
No 30
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.64 E-value=3.6e-08 Score=70.72 Aligned_cols=62 Identities=19% Similarity=0.281 Sum_probs=58.6
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 62 (91)
+||+++|...|+|+|||.+.+.++.+.+|+.+|+....+.|+++.+...+.+++..+.++.-
T Consensus 63 kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~f 124 (476)
T KOG0376|consen 63 KAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKF 124 (476)
T ss_pred hhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhh
Confidence 47899999999999999999999999999999999999999999999999999999988644
No 31
>PLN02789 farnesyltranstransferase
Probab=98.62 E-value=1.6e-07 Score=65.02 Aligned_cols=88 Identities=13% Similarity=0.098 Sum_probs=73.1
Q ss_pred cccccCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcccCCc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIA-DLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES-NKRDAKFYANMFARVTKDS 79 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg-~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~mf~~~~~~~ 79 (91)
+|+++|++..+|..||.++..+| ++++|+..++++++.+|++..++...+.+-..++.. ..++...+.++++..+..+
T Consensus 63 aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy 142 (320)
T PLN02789 63 VIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNY 142 (320)
T ss_pred HHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccH
Confidence 68899999999999999999999 689999999999999999999888877776666542 2345667889998888888
Q ss_pred hhhhhhhhcc
Q 034553 80 SVATKVGYFA 89 (91)
Q Consensus 80 ~~~~~~g~f~ 89 (91)
++-++.||.+
T Consensus 143 ~AW~~R~w~l 152 (320)
T PLN02789 143 HAWSHRQWVL 152 (320)
T ss_pred HHHHHHHHHH
Confidence 8888777654
No 32
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.61 E-value=2.6e-07 Score=55.52 Aligned_cols=75 Identities=11% Similarity=-0.063 Sum_probs=63.3
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK 77 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~ 77 (91)
++.++|.++.+++++|.+++.+|++++|+..++++++++|.+......+..+....++..++.. .+.......+.
T Consensus 43 ~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~ 117 (135)
T TIGR02552 43 LAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALK-ALDLAIEICGE 117 (135)
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhccc
Confidence 4677999999999999999999999999999999999999999999999988888887776643 55666655443
No 33
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.58 E-value=1.9e-07 Score=61.99 Aligned_cols=86 Identities=20% Similarity=0.215 Sum_probs=68.9
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--ccCC
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR--VTKD 78 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~--~~~~ 78 (91)
+||++||++..+|.-+|.+|..+|+.+.|-+.|++|+.++|++.++.+...-.-=..++..++... +.+.... .+..
T Consensus 60 kAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~-F~~Al~~P~Y~~~ 138 (250)
T COG3063 60 KALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQ-FERALADPAYGEP 138 (250)
T ss_pred HHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHH-HHHHHhCCCCCCc
Confidence 478999999999999999999999999999999999999999999999998877777777776443 3433322 2344
Q ss_pred chhhhhhhh
Q 034553 79 SSVATKVGY 87 (91)
Q Consensus 79 ~~~~~~~g~ 87 (91)
+++..|.|+
T Consensus 139 s~t~eN~G~ 147 (250)
T COG3063 139 SDTLENLGL 147 (250)
T ss_pred chhhhhhHH
Confidence 556666664
No 34
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.58 E-value=1.1e-07 Score=66.73 Aligned_cols=76 Identities=20% Similarity=0.344 Sum_probs=65.1
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD 78 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~ 78 (91)
|++.||++..|+||||.+|+.+|+-..|+.|+.++|++.|+...++.+...+.-+.++..+++. -|+.++...++.
T Consensus 64 Ave~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~-DF~~vl~~~~s~ 139 (504)
T KOG0624|consen 64 AVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEA-DFDQVLQHEPSN 139 (504)
T ss_pred HHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHH-HHHHHHhcCCCc
Confidence 6889999999999999999999999999999999999999999999888888888888887755 356666655443
No 35
>PRK12370 invasion protein regulator; Provisional
Probab=98.57 E-value=4.1e-07 Score=66.75 Aligned_cols=62 Identities=16% Similarity=0.103 Sum_probs=39.7
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
|++++|+++.+|..+|.++...|++++|+..|+++++++|++..+...+..+....++..++
T Consensus 330 Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eA 391 (553)
T PRK12370 330 ATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEA 391 (553)
T ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 45666666666666666666666666666666666666666666666666555555555444
No 36
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.57 E-value=1.5e-07 Score=66.05 Aligned_cols=61 Identities=31% Similarity=0.320 Sum_probs=57.1
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 62 (91)
+|+++|+++.++..||.||+.-..|++|+.+|++|++++|+|..++..+.++++..++..+
T Consensus 333 vL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~k 393 (504)
T KOG0624|consen 333 VLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGK 393 (504)
T ss_pred HHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhcc
Confidence 6889999999999999999999999999999999999999999999999999888777644
No 37
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.56 E-value=4e-07 Score=57.32 Aligned_cols=72 Identities=6% Similarity=-0.122 Sum_probs=59.5
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARV 75 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~ 75 (91)
..+||.+...|+.+|.++-.+|+|++|+..|.+++.++|+++.....+..+.-.+++...+.+ .++......
T Consensus 62 ~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~-aF~~Ai~~~ 133 (157)
T PRK15363 62 TIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIK-ALKAVVRIC 133 (157)
T ss_pred HHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHH-HHHHHHHHh
Confidence 467999999999999999999999999999999999999999888888888888877776633 455554443
No 38
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.54 E-value=4e-07 Score=48.59 Aligned_cols=43 Identities=26% Similarity=0.260 Sum_probs=39.3
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR 44 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~ 44 (91)
+++.+|+++.+++.+|.++..+|++++|+..|+++++++|+|+
T Consensus 23 ~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 23 ALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5788999999999999999999999999999999999999975
No 39
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=98.53 E-value=2.7e-07 Score=43.29 Aligned_cols=33 Identities=30% Similarity=0.467 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEADPQN 43 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~ 43 (91)
++|+.+|.++..+|++++|+..|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 689999999999999999999999999999964
No 40
>PLN02789 farnesyltranstransferase
Probab=98.52 E-value=6.3e-07 Score=62.13 Aligned_cols=86 Identities=13% Similarity=0.040 Sum_probs=62.1
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---H---HHHHHHHHHHHHhhhcc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQ---A---ESNKRDAKFYANMFARV 75 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~---~---~~~~~~~~~~~~mf~~~ 75 (91)
+|++||.|..||..||.++..+|+|++|++.+.++++++|+|..++..+..+-..+ . ...+++.....++....
T Consensus 134 al~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~ 213 (320)
T PLN02789 134 ILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN 213 (320)
T ss_pred HHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC
Confidence 67889999999999999999999999999999999999999998888887765443 1 11233444555555555
Q ss_pred cCCchhhhhhhh
Q 034553 76 TKDSSVATKVGY 87 (91)
Q Consensus 76 ~~~~~~~~~~g~ 87 (91)
+...+.-+.+|.
T Consensus 214 P~N~SaW~Yl~~ 225 (320)
T PLN02789 214 PRNESPWRYLRG 225 (320)
T ss_pred CCCcCHHHHHHH
Confidence 554444444443
No 41
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.51 E-value=5.9e-07 Score=69.93 Aligned_cols=85 Identities=7% Similarity=0.048 Sum_probs=55.1
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
+++++|+++.+++..|.++..+|++++|+..|+++++++|++..+...+..+....++..++.. .+++.+...+....+
T Consensus 635 AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~-~l~~Al~l~P~~a~i 713 (987)
T PRK09782 635 ALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH-YARLVIDDIDNQALI 713 (987)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHhcCCCCchh
Confidence 4566677777777777777777777777777777777777766666666666666666666543 456666665555555
Q ss_pred hhhhhh
Q 034553 82 ATKVGY 87 (91)
Q Consensus 82 ~~~~g~ 87 (91)
...+|+
T Consensus 714 ~~~~g~ 719 (987)
T PRK09782 714 TPLTPE 719 (987)
T ss_pred hhhhhH
Confidence 555554
No 42
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.50 E-value=9.7e-07 Score=63.43 Aligned_cols=69 Identities=12% Similarity=0.121 Sum_probs=56.4
Q ss_pred cccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034553 4 DCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREV---KLLQKSLKQLQAESNKRDAKFYANMFA 73 (91)
Q Consensus 4 ~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~mf~ 73 (91)
.-+|+++.+|+.+|.+++.+|+|++|+..|+++++++|++.++ ...+.-+...+++..++.. .+++...
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla-~LrrALe 140 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAAD-CLRTALR 140 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHH
Confidence 3589999999999999999999999999999999999999865 7777777777777666533 3344333
No 43
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=5e-07 Score=61.67 Aligned_cols=56 Identities=20% Similarity=0.130 Sum_probs=51.8
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQA 58 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~ 58 (91)
|..||++++.|..+|.+|+.+|+++.|...|.+|++|.|+|.++...+.++-....
T Consensus 149 L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a 204 (287)
T COG4235 149 LQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQA 204 (287)
T ss_pred HHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999999999999998888766554
No 44
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.46 E-value=1.2e-06 Score=64.79 Aligned_cols=76 Identities=17% Similarity=0.221 Sum_probs=61.8
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD 78 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~ 78 (91)
+|+++|++..+|+.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++.. .+.+.....+..
T Consensus 357 al~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~kal~l~P~~ 432 (615)
T TIGR00990 357 SIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGK-DYQKSIDLDPDF 432 (615)
T ss_pred HHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHcCccC
Confidence 5778899999999999999999999999999999999999999888888888888877777643 466666554443
No 45
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.45 E-value=1.1e-06 Score=65.52 Aligned_cols=86 Identities=10% Similarity=0.045 Sum_probs=73.5
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS 80 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~ 80 (91)
+||+++|+++.||...|.|+-.+|+..+|+..|+++|.+.|+.+++...|..+........++.+ .|.+.|.-+++-..
T Consensus 311 ral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~-ly~~al~v~p~~aa 389 (966)
T KOG4626|consen 311 RALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR-LYLKALEVFPEFAA 389 (966)
T ss_pred HHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH-HHHHHHhhChhhhh
Confidence 47889999999999999999999999999999999999999999999999999888877777643 67777777777777
Q ss_pred hhhhhhh
Q 034553 81 VATKVGY 87 (91)
Q Consensus 81 ~~~~~g~ 87 (91)
..||+|-
T Consensus 390 a~nNLa~ 396 (966)
T KOG4626|consen 390 AHNNLAS 396 (966)
T ss_pred hhhhHHH
Confidence 7777664
No 46
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.43 E-value=1.5e-06 Score=56.37 Aligned_cols=76 Identities=16% Similarity=0.113 Sum_probs=60.9
Q ss_pred cccccCCCHHHHHHHHHHH-HHhCC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553 2 VLDCDCHNVKALYRRAQVY-MEIAD--LILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD 78 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~-~~lg~--~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~ 78 (91)
+++++|+++..++..|.++ ...|+ +++|...++++++++|++..+...+..+....+++.++. ..++++....+..
T Consensus 99 Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai-~~~~~aL~l~~~~ 177 (198)
T PRK10370 99 ALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAI-ELWQKVLDLNSPR 177 (198)
T ss_pred HHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCC
Confidence 6778888888888888875 56676 588888899999999888888888888888888888774 4677777766553
No 47
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.43 E-value=2e-06 Score=58.68 Aligned_cols=82 Identities=11% Similarity=0.067 Sum_probs=68.8
Q ss_pred ccCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhh
Q 034553 5 CDCH-NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVAT 83 (91)
Q Consensus 5 ~~p~-~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~ 83 (91)
++|. .+..|+.+|.++..+|++++|+.+|+++++++|++..+...+..+....++..++.. .+.+.....+.......
T Consensus 58 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~-~~~~Al~l~P~~~~a~~ 136 (296)
T PRK11189 58 LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE-AFDSVLELDPTYNYAYL 136 (296)
T ss_pred CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCCCHHHHH
Confidence 4444 488999999999999999999999999999999999999999999999999888754 57777777666555655
Q ss_pred hhhh
Q 034553 84 KVGY 87 (91)
Q Consensus 84 ~~g~ 87 (91)
+.|.
T Consensus 137 ~lg~ 140 (296)
T PRK11189 137 NRGI 140 (296)
T ss_pred HHHH
Confidence 5554
No 48
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.41 E-value=3.8e-07 Score=64.15 Aligned_cols=56 Identities=25% Similarity=0.297 Sum_probs=50.8
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQ 57 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~ 57 (91)
||.+|-.++|||.|||.|...||...+|.+|++.+|+|+|++.+++..+..+....
T Consensus 157 AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~ 212 (536)
T KOG4648|consen 157 AIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLR 212 (536)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchH
Confidence 57788899999999999999999999999999999999999988888887776633
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=6.2e-07 Score=66.33 Aligned_cols=75 Identities=21% Similarity=0.304 Sum_probs=66.1
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT 76 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~ 76 (91)
.||..||.+-.|||..|.+|+++++++.|.-.|++|++++|.|..+.--+..+..+++..+++- ..+.+.+-..+
T Consensus 480 ~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL-~~~~~A~~ld~ 554 (638)
T KOG1126|consen 480 KALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKAL-QLYEKAIHLDP 554 (638)
T ss_pred hhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHH-HHHHHHHhcCC
Confidence 3789999999999999999999999999999999999999999999999999999999888763 35666655543
No 50
>PRK12370 invasion protein regulator; Provisional
Probab=98.40 E-value=1.5e-06 Score=63.81 Aligned_cols=87 Identities=15% Similarity=0.158 Sum_probs=71.3
Q ss_pred CcccccCCCHHHHHHHHHHHHHhC---------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIA---------DLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANM 71 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg---------~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~m 71 (91)
+|+++||+++.+|..+|.++..++ ++++|+..++++++++|++..+...+..+....++..++. ..+.+.
T Consensus 286 ~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~-~~~~~A 364 (553)
T PRK12370 286 QCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGS-LLFKQA 364 (553)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHH
Confidence 378999999999999999887554 3899999999999999999999999998888888777764 467777
Q ss_pred hhcccCCchhhhhhhhc
Q 034553 72 FARVTKDSSVATKVGYF 88 (91)
Q Consensus 72 f~~~~~~~~~~~~~g~f 88 (91)
....+........+|..
T Consensus 365 l~l~P~~~~a~~~lg~~ 381 (553)
T PRK12370 365 NLLSPISADIKYYYGWN 381 (553)
T ss_pred HHhCCCCHHHHHHHHHH
Confidence 77777666666666654
No 51
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.38 E-value=2.9e-06 Score=64.10 Aligned_cols=84 Identities=7% Similarity=-0.033 Sum_probs=50.3
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
+++++|++..|+..++.++.+++.+++|+..+++++..+|++.++...+..+-..+++++++. ..|.+.....+...++
T Consensus 112 ~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~-~~y~~~~~~~p~~~~~ 190 (694)
T PRK15179 112 IHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQAD-ACFERLSRQHPEFENG 190 (694)
T ss_pred HHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHH-HHHHHHHhcCCCcHHH
Confidence 455666666666666666666666666666666666666666666666666666666666653 3455555543333334
Q ss_pred hhhhh
Q 034553 82 ATKVG 86 (91)
Q Consensus 82 ~~~~g 86 (91)
...+|
T Consensus 191 ~~~~a 195 (694)
T PRK15179 191 YVGWA 195 (694)
T ss_pred HHHHH
Confidence 33333
No 52
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.38 E-value=7.2e-06 Score=44.15 Aligned_cols=62 Identities=24% Similarity=0.231 Sum_probs=47.0
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
+++..|.+..+++.+|.++...+++++|+..|++++.+.|.+..+...+..+....++....
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 87 (100)
T cd00189 26 ALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEA 87 (100)
T ss_pred HHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHH
Confidence 45667777788888888888888888888888888888888777777776666666665444
No 53
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.35 E-value=2.5e-06 Score=66.48 Aligned_cols=86 Identities=15% Similarity=0.218 Sum_probs=74.0
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
+++++|+ +.+++.+|.++..+|++++|+..|++++.++|++..+...+..+-...++..++. ..+.+.....+....+
T Consensus 602 AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi-~~l~~AL~l~P~~~~a 679 (987)
T PRK09782 602 SLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSR-EMLERAHKGLPDDPAL 679 (987)
T ss_pred HHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHhCCCCHHH
Confidence 6788996 9999999999999999999999999999999999999999998888887776663 4678888887877777
Q ss_pred hhhhhhcc
Q 034553 82 ATKVGYFA 89 (91)
Q Consensus 82 ~~~~g~f~ 89 (91)
..++|+.+
T Consensus 680 ~~nLA~al 687 (987)
T PRK09782 680 IRQLAYVN 687 (987)
T ss_pred HHHHHHHH
Confidence 87777643
No 54
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.35 E-value=2.9e-06 Score=64.11 Aligned_cols=76 Identities=7% Similarity=0.025 Sum_probs=66.9
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK 77 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~ 77 (91)
++++.+|++..+++.+|.++..+|+|++|+..|++++.-+|+++.++..+..+-+..++..++. ..|++.+...+.
T Consensus 145 ~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~-~~~~~a~~~~~~ 220 (694)
T PRK15179 145 LYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR-DVLQAGLDAIGD 220 (694)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhhCc
Confidence 3678999999999999999999999999999999999999999999999999999998888874 467777665543
No 55
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.34 E-value=4.1e-06 Score=56.33 Aligned_cols=81 Identities=14% Similarity=0.110 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhh
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVG 86 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~g 86 (91)
|.....+.-.|+..+..|+|..|+..++++..++|+|.+++..+..+-..+++...++. .|.+.++..+....+.||.|
T Consensus 97 ~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~-ay~qAl~L~~~~p~~~nNlg 175 (257)
T COG5010 97 PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARR-AYRQALELAPNEPSIANNLG 175 (257)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHH-HHHHHHHhccCCchhhhhHH
Confidence 33444444455555555555555555555555555555555555555555555555432 34555555555555555555
Q ss_pred hc
Q 034553 87 YF 88 (91)
Q Consensus 87 ~f 88 (91)
++
T Consensus 176 ms 177 (257)
T COG5010 176 MS 177 (257)
T ss_pred HH
Confidence 43
No 56
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.29 E-value=2.6e-06 Score=57.23 Aligned_cols=65 Identities=9% Similarity=0.016 Sum_probs=59.2
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAK 66 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~ 66 (91)
+..++|+++++|.-+|.+|.++|++++|...|.+++++.|+++.+.+.+.-.....++.+.++.-
T Consensus 126 A~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~l 190 (257)
T COG5010 126 AARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETL 190 (257)
T ss_pred HhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHH
Confidence 57889999999999999999999999999999999999999999999998888887777776553
No 57
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.24 E-value=7.1e-06 Score=61.49 Aligned_cols=74 Identities=9% Similarity=0.080 Sum_probs=57.5
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT 76 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~ 76 (91)
+++++|+++.++..+|.++..+|++++|+..++++++++|++..+...+..+....++..++.. .+.++....+
T Consensus 276 Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~-~l~~al~~~P 349 (656)
T PRK15174 276 ALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASD-EFVQLAREKG 349 (656)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCc
Confidence 5678888888888888888888888888888888888888888888888887777777766533 4555555433
No 58
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.22 E-value=1.5e-05 Score=46.24 Aligned_cols=75 Identities=13% Similarity=0.077 Sum_probs=55.1
Q ss_pred ccccCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553 3 LDCDCHN---VKALYRRAQVYMEIADLILAELDIKKAIEADPQN---REVKLLQKSLKQLQAESNKRDAKFYANMFARVT 76 (91)
Q Consensus 3 l~~~p~~---~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~ 76 (91)
++.+|++ ..+++.+|.+++..|++++|+..|+.++..+|++ ..+...+..+....+...+.. ..+..+....+
T Consensus 29 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~~~~~p 107 (119)
T TIGR02795 29 LKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAK-ATLQQVIKRYP 107 (119)
T ss_pred HHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHH-HHHHHHHHHCc
Confidence 4556665 6789999999999999999999999999998885 456667777766666665553 35666666654
Q ss_pred CC
Q 034553 77 KD 78 (91)
Q Consensus 77 ~~ 78 (91)
..
T Consensus 108 ~~ 109 (119)
T TIGR02795 108 GS 109 (119)
T ss_pred CC
Confidence 43
No 59
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=9.8e-06 Score=58.63 Aligned_cols=72 Identities=15% Similarity=0.148 Sum_probs=59.9
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFA 73 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~ 73 (91)
+|++++|.+-+|||..|++|.-++-+.=|+-.|++|+++-|+|+-++..|+.|..++..-.++.+ -|++...
T Consensus 389 rAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK-Cykrai~ 460 (559)
T KOG1155|consen 389 RAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK-CYKRAIL 460 (559)
T ss_pred HHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH-HHHHHHh
Confidence 37888999999999999999888888889999999999999999899999999888888777754 5565543
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.18 E-value=1.2e-05 Score=50.82 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=54.5
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMF 72 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf 72 (91)
+++.+|++..+++.+|.++..+|++++|+..++++++++|.+..+...+..+....++..++.. .+.+..
T Consensus 57 ~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~-~~~~~~ 126 (234)
T TIGR02521 57 ALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQ-QFEQAI 126 (234)
T ss_pred HHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHH-HHHHHH
Confidence 4567889999999999999999999999999999999999888877777777666666655432 344443
No 61
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.17 E-value=8.8e-06 Score=54.66 Aligned_cols=79 Identities=15% Similarity=0.182 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhh
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVG 86 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~g 86 (91)
|.++..|+.+|.++...|++++|+..|+++++++|+|..+...+.-+....++..+. +...+..-...+........+|
T Consensus 143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~-~~~l~~~~~~~~~~~~~~~~la 221 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEA-REALKRLLKAAPDDPDLWDALA 221 (280)
T ss_dssp -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHH-HHHHHHHHHH-HTSCCHCHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHH-HHHHHHHHHHCcCHHHHHHHHH
Confidence 578889999999999999999999999999999999999888776655544444432 2233333333334444444444
No 62
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=98.17 E-value=4.8e-06 Score=36.90 Aligned_cols=33 Identities=36% Similarity=0.507 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEADPQN 43 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~ 43 (91)
.+|+++|.+++.+++++.|+..++++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 578999999999999999999999999999864
No 63
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=98.17 E-value=6.9e-06 Score=37.86 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEADPQN 43 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~ 43 (91)
.|+|+.|.++..+|++++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 489999999999999999999999999999974
No 64
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.16 E-value=1.1e-05 Score=59.81 Aligned_cols=85 Identities=12% Similarity=0.105 Sum_probs=60.4
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
+++.+|+++.+++..|.++..+|++++|+..|+++++.+|++..+...+..+....+. .+ -...+.+++...+.....
T Consensus 762 ~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~-A~~~~~~~~~~~~~~~~~ 839 (899)
T TIGR02917 762 WLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PR-ALEYAEKALKLAPNIPAI 839 (899)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HH-HHHHHHHHHhhCCCCcHH
Confidence 3566888888888888888888888888888888888888888877777766666555 22 234556666555555445
Q ss_pred hhhhhhc
Q 034553 82 ATKVGYF 88 (91)
Q Consensus 82 ~~~~g~f 88 (91)
...+|..
T Consensus 840 ~~~~~~~ 846 (899)
T TIGR02917 840 LDTLGWL 846 (899)
T ss_pred HHHHHHH
Confidence 5555443
No 65
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.14 E-value=1.4e-05 Score=51.47 Aligned_cols=64 Identities=17% Similarity=0.150 Sum_probs=52.0
Q ss_pred cccccCCCHHHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIAD-----------LILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDA 65 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~-----------~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 65 (91)
||.++|+...|++..|.|+..++. |+.|...|++|..++|+|...+..|....+.-.-..+-++
T Consensus 61 AL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e~~~ 135 (186)
T PF06552_consen 61 ALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPELHMEIHK 135 (186)
T ss_dssp HHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHHHHHHHH
Confidence 789999999999999999988875 8999999999999999999999999888776666555444
No 66
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=1e-05 Score=58.96 Aligned_cols=62 Identities=23% Similarity=0.210 Sum_probs=48.2
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEAD-PQNREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~ 62 (91)
+||+++|+++||++||+.|+..+|++.+|+.|..-..-++ -+|..+.-.+.++-++.....-
T Consensus 174 kALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka 236 (606)
T KOG0547|consen 174 KALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKA 236 (606)
T ss_pred HHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999988755554 3466666666666665555443
No 67
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.08 E-value=2.1e-06 Score=48.13 Aligned_cols=63 Identities=22% Similarity=0.230 Sum_probs=52.9
Q ss_pred cccccCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCH--NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDA 65 (91)
Q Consensus 2 al~~~p~--~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 65 (91)
+++.+|. +...++.+|.+++.+|+|++|+..+++ ++++|.+..+.-.+.++--.++++.++..
T Consensus 15 ~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 15 LLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3556674 567788899999999999999999999 88999988888888999999988887643
No 68
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.07 E-value=1.6e-05 Score=59.60 Aligned_cols=85 Identities=11% Similarity=0.001 Sum_probs=68.9
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLIL----AELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK 77 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~----A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~ 77 (91)
+++++|+++.+++.+|.++..+|++++ |+..|+++++++|++..+...+..+....++..++. ..+++.....+.
T Consensus 238 al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~-~~l~~al~l~P~ 316 (656)
T PRK15174 238 ALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAI-PLLQQSLATHPD 316 (656)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHhCCC
Confidence 567899999999999999999999986 899999999999999999999988888888777764 356676666655
Q ss_pred Cchhhhhhhh
Q 034553 78 DSSVATKVGY 87 (91)
Q Consensus 78 ~~~~~~~~g~ 87 (91)
...+...+|.
T Consensus 317 ~~~a~~~La~ 326 (656)
T PRK15174 317 LPYVRAMYAR 326 (656)
T ss_pred CHHHHHHHHH
Confidence 5555555543
No 69
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.06 E-value=3.6e-05 Score=52.17 Aligned_cols=76 Identities=11% Similarity=0.083 Sum_probs=57.2
Q ss_pred ccccCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553 3 LDCDCHN---VKALYRRAQVYMEIADLILAELDIKKAIEADPQNR---EVKLLQKSLKQLQAESNKRDAKFYANMFARVT 76 (91)
Q Consensus 3 l~~~p~~---~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~ 76 (91)
|+..|++ +.++|.+|.+++..|++++|+..|+++++..|++. ++.-.+..+...++...++ +..+..+....+
T Consensus 170 l~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A-~~~~~~vi~~yP 248 (263)
T PRK10803 170 VKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKA-KAVYQQVIKKYP 248 (263)
T ss_pred HHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHCc
Confidence 5667877 57999999999999999999999999999988864 5666666666666655554 345666666665
Q ss_pred CCc
Q 034553 77 KDS 79 (91)
Q Consensus 77 ~~~ 79 (91)
+..
T Consensus 249 ~s~ 251 (263)
T PRK10803 249 GTD 251 (263)
T ss_pred CCH
Confidence 543
No 70
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.04 E-value=8.5e-05 Score=46.86 Aligned_cols=73 Identities=19% Similarity=0.063 Sum_probs=65.0
Q ss_pred cccc-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553 3 LDCD-CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT 76 (91)
Q Consensus 3 l~~~-p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~ 76 (91)
..++ ++....+|..|.-++..|++++|...|+-+..+||.+...+-.|..+.+..+++.++- ..|...+....
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI-~aY~~A~~L~~ 100 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAI-YAYGRAAQIKI 100 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcCC
Confidence 3456 7788999999999999999999999999999999999999999999999999999884 46777776644
No 71
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.01 E-value=0.0002 Score=38.29 Aligned_cols=64 Identities=19% Similarity=0.140 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553 12 ALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT 76 (91)
Q Consensus 12 a~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~ 76 (91)
+++.+|.++...|++++|+..+++++++.|++..+...+..+....+...++. ..+.......+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~~~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEAL-EDYEKALELDP 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCC
Confidence 68899999999999999999999999999999888888888887777766653 34455444433
No 72
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.00 E-value=2.1e-05 Score=58.94 Aligned_cols=62 Identities=18% Similarity=0.096 Sum_probs=45.4
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
||.+.|+++.+.+.+|.++..+|.+++|...|.+++++.|.-+++.+.|..+.+..+...++
T Consensus 346 aL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~A 407 (966)
T KOG4626|consen 346 ALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDA 407 (966)
T ss_pred HHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHH
Confidence 56777777777777777777777777777777777777777777777777666666555544
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.98 E-value=7.3e-05 Score=47.14 Aligned_cols=79 Identities=24% Similarity=0.276 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhhhc
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVGYF 88 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~g~f 88 (91)
.+.+++.+|.++...|++++|+..++++++.+|++..+...+..+....++..++. ..+.+.....+........+|.+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAE-DSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCCHHHHHHHHHH
Confidence 47889999999999999999999999999999999998888888888877776653 35666666555544455555543
No 74
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.98 E-value=4.6e-05 Score=58.04 Aligned_cols=73 Identities=21% Similarity=0.047 Sum_probs=56.2
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARV 75 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~ 75 (91)
++...|+++.+++.+|.++...|++++|+..++++++++|++..+...+..+....++..+++. .++.+....
T Consensus 385 al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~-~~~~ll~~~ 457 (765)
T PRK10049 385 LAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDV-LTDDVVARE 457 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHH-HHHHHHHhC
Confidence 4567899999999999999999999999999999999999988777777777666666666543 344444443
No 75
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.98 E-value=3.7e-05 Score=57.08 Aligned_cols=87 Identities=15% Similarity=0.088 Sum_probs=65.5
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
+++.+|+++.++...|.++..+|+ ++|+..+++++++.|++..+...+..+....+...++. ..++++....+....+
T Consensus 796 ~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~ 873 (899)
T TIGR02917 796 VVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRAL-PLLRKAVNIAPEAAAI 873 (899)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCChHH
Confidence 456778888888888888888888 77888888888888888888777777777777666664 3677777776666666
Q ss_pred hhhhhhccc
Q 034553 82 ATKVGYFAC 90 (91)
Q Consensus 82 ~~~~g~f~~ 90 (91)
..+++..+|
T Consensus 874 ~~~l~~~~~ 882 (899)
T TIGR02917 874 RYHLALALL 882 (899)
T ss_pred HHHHHHHHH
Confidence 766666554
No 76
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.97 E-value=4.5e-05 Score=56.13 Aligned_cols=70 Identities=14% Similarity=0.085 Sum_probs=59.9
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMF 72 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf 72 (91)
|+..||.+++||.++|.+....++-..|+..++++++|+|+|.++...|.....-.....++-+ +..+|.
T Consensus 311 AVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~-~L~~Wi 380 (579)
T KOG1125|consen 311 AVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK-MLDKWI 380 (579)
T ss_pred HHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH-HHHHHH
Confidence 5788999999999999999999999999999999999999999999998877766666665533 455554
No 77
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.96 E-value=6.4e-05 Score=47.32 Aligned_cols=72 Identities=11% Similarity=0.076 Sum_probs=48.9
Q ss_pred ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553 5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN---REVKLLQKSLKQLQAESNKRDAKFYANMFARVTK 77 (91)
Q Consensus 5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~ 77 (91)
.+|....+++++|..+...|++++|+..|++++++.|+. ..+...+..+....+...++.. .+.+.....+.
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~ 104 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALE-YYHQALELNPK 104 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCcc
Confidence 345667778888888888888888888888888877653 3566666777766666666533 44555544333
No 78
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.95 E-value=7.6e-05 Score=46.72 Aligned_cols=56 Identities=11% Similarity=0.011 Sum_probs=45.6
Q ss_pred cccccCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 034553 2 VLDCDCH---NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQ 57 (91)
Q Consensus 2 al~~~p~---~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~ 57 (91)
++.+.|+ .+.+|+..|.++..+|++++|+..|++++.++|.+......+..+...+
T Consensus 61 al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~ 119 (168)
T CHL00033 61 AMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYR 119 (168)
T ss_pred HHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 3445454 3458999999999999999999999999999999988777777777633
No 79
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.94 E-value=9.7e-06 Score=38.76 Aligned_cols=29 Identities=21% Similarity=0.166 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Q 034553 12 ALYRRAQVYMEIADLILAELDIKKAIEAD 40 (91)
Q Consensus 12 a~~rrg~a~~~lg~~~~A~~~~~~al~l~ 40 (91)
+|..+|.++..+|+|++|+..|+++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 68899999999999999999999977654
No 80
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.94 E-value=4.8e-05 Score=40.53 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=44.5
Q ss_pred HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 20 YMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 20 ~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
++..|+|++|+..|++++..+|+|.++...+..+....++..++.. .+.++...
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~-~l~~~~~~ 54 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEE-LLERLLKQ 54 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHH-HHHCCHGG
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHH
Confidence 4678999999999999999999999999999999999998887743 44544444
No 81
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.94 E-value=5.1e-05 Score=57.76 Aligned_cols=82 Identities=10% Similarity=0.039 Sum_probs=52.6
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
+|+++|.++.+++..|.++...|++++|+..++++++.+|++.. ...+..+....+...++. ..+.++....+.....
T Consensus 75 al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al-~~l~~al~~~P~~~~~ 152 (765)
T PRK10049 75 ALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDEL-RAMTQALPRAPQTQQY 152 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHH-HHHHHHHHhCCCCHHH
Confidence 45667777777777777777777777777777777777777777 666666666655555543 3456666655554444
Q ss_pred hhhh
Q 034553 82 ATKV 85 (91)
Q Consensus 82 ~~~~ 85 (91)
...+
T Consensus 153 ~~~l 156 (765)
T PRK10049 153 PTEY 156 (765)
T ss_pred HHHH
Confidence 3333
No 82
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.93 E-value=9.8e-05 Score=48.17 Aligned_cols=44 Identities=16% Similarity=0.099 Sum_probs=34.0
Q ss_pred cccccCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH
Q 034553 2 VLDCDCHNV---KALYRRAQVYMEIADLILAELDIKKAIEADPQNRE 45 (91)
Q Consensus 2 al~~~p~~~---ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~ 45 (91)
++..+|+++ .+++.+|.+++..|++++|+..|+++++..|++..
T Consensus 59 ~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 105 (235)
T TIGR03302 59 LESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD 105 (235)
T ss_pred HHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 345666654 67788888888888888888888888888887665
No 83
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.89 E-value=3.9e-05 Score=57.83 Aligned_cols=62 Identities=8% Similarity=0.062 Sum_probs=57.9
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
+++++|-....||++|.+..++++++.|.++|.+++.++|++.++++.+.....+++...++
T Consensus 511 sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra 572 (777)
T KOG1128|consen 511 SLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRA 572 (777)
T ss_pred HhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHH
Confidence 47889999999999999999999999999999999999999999999999999888877664
No 84
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.83 E-value=0.00011 Score=54.78 Aligned_cols=45 Identities=20% Similarity=0.136 Sum_probs=27.9
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE 45 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~ 45 (91)
+|+++||.|.--....|.++.++|+.++|+..|++|+.+||.|+.
T Consensus 514 kA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 514 KAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred hhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence 355666666666666666666666666666666666666666543
No 85
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.82 E-value=0.00018 Score=38.74 Aligned_cols=59 Identities=17% Similarity=0.144 Sum_probs=51.3
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553 17 AQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT 76 (91)
Q Consensus 17 g~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~ 76 (91)
..++...++|++|+..+++++.++|++..++..+..+....+...++. ..+.++....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~-~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEAL-EDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHH-HHHHHHHHHCC
Confidence 467899999999999999999999999999999999999999988874 45677766644
No 86
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=7.6e-05 Score=53.49 Aligned_cols=62 Identities=21% Similarity=0.155 Sum_probs=50.6
Q ss_pred cccccCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHN----VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 2 al~~~p~~----~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
+|.+||+| ++.|+.||.+...+|+..+|+.+++++++|||..-.+......+...+.+..++
T Consensus 275 al~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~A 340 (486)
T KOG0550|consen 275 ALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEA 340 (486)
T ss_pred hhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68889965 566999999999999999999999999999998766666666666666655544
No 87
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.81 E-value=0.00014 Score=48.19 Aligned_cols=68 Identities=15% Similarity=0.104 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDS 79 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~ 79 (91)
-.|..||.|+++++.++.|+.++.++++|+|.+..+......+...+..+.++ -.-|+++....++..
T Consensus 135 Ily~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eea-leDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 135 ILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEA-LEDYKKILESDPSRR 202 (271)
T ss_pred HHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHhCcchH
Confidence 35789999999999999999999999999999877766666666666555444 234677776666544
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.81 E-value=0.00024 Score=46.34 Aligned_cols=75 Identities=9% Similarity=-0.016 Sum_probs=59.6
Q ss_pred cccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc
Q 034553 4 DCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR---EVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDS 79 (91)
Q Consensus 4 ~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~ 79 (91)
..++..+.+++.+|.+++..|++++|+..|++++..+|+++ .+...+..+....++..++. ..+.++....++..
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~-~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAI-AAADRFIRLHPNHP 104 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHCcCCC
Confidence 35677899999999999999999999999999999999876 45566677777777776663 46777777665443
No 89
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00026 Score=51.52 Aligned_cols=72 Identities=15% Similarity=0.136 Sum_probs=63.7
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFA 73 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~ 73 (91)
+|+.+.|+++.-|.-+|.+|.++++.++|+..|.+|+.+...+..+...|..+.+.++...++ .+.|.+...
T Consensus 423 kA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA-a~~yek~v~ 494 (559)
T KOG1155|consen 423 KALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA-AQYYEKYVE 494 (559)
T ss_pred HHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH-HHHHHHHHH
Confidence 467899999999999999999999999999999999999888889999999999999998886 345555443
No 90
>PRK11906 transcriptional regulator; Provisional
Probab=97.78 E-value=0.00013 Score=52.72 Aligned_cols=63 Identities=8% Similarity=-0.048 Sum_probs=53.0
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
+|+++||.++.|++..|.++...++++.|...|++|+.++|+.+.+.-...-+.-..++..++
T Consensus 329 rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a 391 (458)
T PRK11906 329 YVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEA 391 (458)
T ss_pred HHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHH
Confidence 378999999999999999999999999999999999999999998777776655555444443
No 91
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.77 E-value=0.00015 Score=57.41 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=27.7
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 62 (91)
+|.++.+++.+|.++..+|++++|+..|+++++++|++..++..+..+....++..+
T Consensus 599 ~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 599 QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 444444555555555555555555555555555555554444444444444444333
No 92
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.76 E-value=8.8e-05 Score=42.95 Aligned_cols=50 Identities=24% Similarity=0.240 Sum_probs=42.3
Q ss_pred cccccCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 034553 2 VLDCDCHN---VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQK 51 (91)
Q Consensus 2 al~~~p~~---~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~ 51 (91)
++..+|++ +.+++..|.++..+|++++|+..++++++..|++..+...+.
T Consensus 65 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 117 (119)
T TIGR02795 65 VVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK 117 (119)
T ss_pred HHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 34566764 678999999999999999999999999999999987665543
No 93
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00024 Score=50.56 Aligned_cols=73 Identities=12% Similarity=0.120 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhh
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVAT 83 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~ 83 (91)
..+|.+.+.++.++++|..|+..++++|+++|+|..+.-...++...+.++..+ +.-++++...-+....+.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A-~~df~ka~k~~P~Nka~~~ 329 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLA-RDDFQKALKLEPSNKAARA 329 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHH-HHHHHHHHHhCCCcHHHHH
Confidence 357899999999999999999999999999999998888888888888887776 3456777766666555544
No 94
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.75 E-value=0.00014 Score=41.74 Aligned_cols=62 Identities=13% Similarity=0.112 Sum_probs=49.1
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN--REVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~--~~~~~~l~~~~~~~~~~~~~ 63 (91)
+++.+|++..+.|..|.+++..|++++|++.+-.++..+|+. ..++..+-.+-..++....-
T Consensus 14 ~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~pl 77 (90)
T PF14561_consen 14 ALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPL 77 (90)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChH
Confidence 467799999999999999999999999999999999998865 57888887777777765543
No 95
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00015 Score=52.24 Aligned_cols=89 Identities=12% Similarity=0.064 Sum_probs=70.5
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS 80 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~ 80 (91)
++|+.+|++..||.-+|.++..+++.++|+-.|+.|..|.|..-++...|-...-..+..+++- .+....+..++....
T Consensus 325 K~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~-~~An~~~~~~~~sA~ 403 (564)
T KOG1174|consen 325 KCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN-ALANWTIRLFQNSAR 403 (564)
T ss_pred HHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH-HHHHHHHHHhhcchh
Confidence 4789999999999999999999999999999999999999998888888877776666666653 244555556666666
Q ss_pred hhhhhhhccc
Q 034553 81 VATKVGYFAC 90 (91)
Q Consensus 81 ~~~~~g~f~~ 90 (91)
+.+=+|.-.|
T Consensus 404 ~LtL~g~~V~ 413 (564)
T KOG1174|consen 404 SLTLFGTLVL 413 (564)
T ss_pred hhhhhcceee
Confidence 6666664433
No 96
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.74 E-value=0.00016 Score=44.74 Aligned_cols=52 Identities=15% Similarity=0.225 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAE 59 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 59 (91)
.....+|..+..++++++|+.|+..++..|+.+|+|..+......++.++..
T Consensus 69 ~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~itk 120 (149)
T KOG3364|consen 69 RRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIEDKITK 120 (149)
T ss_pred cchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Confidence 3566789999999999999999999999999999999999888887776654
No 97
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.73 E-value=0.00014 Score=57.59 Aligned_cols=73 Identities=12% Similarity=0.090 Sum_probs=62.4
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARV 75 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~ 75 (91)
+++++|+++.+++.+|.++..+|++++|+..|+++++.+|++..+...+..+....++..++. +.+.++....
T Consensus 629 al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~-~~~~~al~~~ 701 (1157)
T PRK11447 629 VLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQ-RTFNRLIPQA 701 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHH-HHHHHHhhhC
Confidence 678899999999999999999999999999999999999999988888888887777776664 3566666543
No 98
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.73 E-value=0.00012 Score=46.05 Aligned_cols=58 Identities=16% Similarity=0.117 Sum_probs=46.7
Q ss_pred cccccCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCH---NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAE 59 (91)
Q Consensus 2 al~~~p~---~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 59 (91)
+++++|+ ...+++.+|.++..+|++++|+..+++++.++|++......+..+...+++
T Consensus 61 al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 61 ALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 3444444 357999999999999999999999999999999998877777666655443
No 99
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.72 E-value=3.3e-05 Score=51.88 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 62 (91)
+++..+...|.++..+|++++|+..|+++++.+|+|+.+...+..+-...+...+
T Consensus 212 ~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~ 266 (280)
T PF13429_consen 212 DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDE 266 (280)
T ss_dssp TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------
T ss_pred CHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccc
Confidence 3333444445555555555555555555555555555554444444444444443
No 100
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=5.9e-05 Score=52.78 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=37.1
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR 44 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~ 44 (91)
+|+.++|.+.||++|-|.|++.|..+.+|+..++.++.++-+..
T Consensus 144 ~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 144 AALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred HHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 47889999999999999999999998888888888777654433
No 101
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.70 E-value=0.00016 Score=50.05 Aligned_cols=61 Identities=20% Similarity=0.136 Sum_probs=37.9
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR-EVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~-~~~~~l~~~~~~~~~~~~ 62 (91)
+++.+|++..+++.+|.++...|++++|+..++++++.+|.+. .+...+..+....+...+
T Consensus 206 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 206 ALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence 3456677777777777777777777777777777777776653 334444444444443333
No 102
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00014 Score=49.81 Aligned_cols=51 Identities=22% Similarity=0.160 Sum_probs=36.3
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKS 52 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~ 52 (91)
+|.+||+|+.+.+..|..++..|+|.+|+...++.+.+.|.+..-+..+++
T Consensus 219 al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 219 ALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 567777777777777777777777777777777777777766544444433
No 103
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.65 E-value=0.00014 Score=39.79 Aligned_cols=65 Identities=14% Similarity=0.031 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---CCC-C---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEA---DPQ-N---REVKLLQKSLKQLQAESNKRDAKFYANMF 72 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l---~p~-~---~~~~~~l~~~~~~~~~~~~~~~~~~~~mf 72 (91)
|+-..++..+|.++..+|+|++|+..|++++++ -++ + ..+...+..+....++..++.. .+.+.+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~-~~~~al 73 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALE-YYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHH
Confidence 455788999999999999999999999999987 222 2 2466777888888888777643 444444
No 104
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.65 E-value=6.7e-05 Score=54.15 Aligned_cols=39 Identities=15% Similarity=0.069 Sum_probs=36.7
Q ss_pred CcccccCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 1 MVLDCDCHNVKA---LYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 1 ~al~~~p~~~ka---~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
+||+++|++..+ ||.+|.+|..+|++++|+.++++|+++
T Consensus 100 rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 100 TALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 378999999976 999999999999999999999999998
No 105
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.62 E-value=8.7e-05 Score=56.25 Aligned_cols=62 Identities=23% Similarity=0.253 Sum_probs=47.9
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHH--HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAEL--DIKKAIEADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~--~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
|+.+||+++....-.|.++...|+..-|.. .+..++++||.|.+++..+..+-+..+...++
T Consensus 710 Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 710 ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHH
Confidence 466788888888888888888887777776 77778888888888888888887777776654
No 106
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.60 E-value=0.00017 Score=55.43 Aligned_cols=65 Identities=22% Similarity=0.241 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFA 73 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~ 73 (91)
++.-.|++.|.+++.+|.++.|++.|.+++.++|++.+++-.|..+...++...++. +....|+.
T Consensus 447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~Ekal-EtL~~~~~ 511 (895)
T KOG2076|consen 447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKAL-ETLEQIIN 511 (895)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHH-HHHhcccC
Confidence 356689999999999999999999999999999999999999999999998887653 34555553
No 107
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00019 Score=52.99 Aligned_cols=56 Identities=18% Similarity=0.064 Sum_probs=49.3
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQL 56 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~ 56 (91)
++|.+.|.++.+|--.|.++..+|+++.|++.|.++|.++|+|..+...|..+-..
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 36788999999999999999999999999999999999999998888877755443
No 108
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.54 E-value=0.0005 Score=49.95 Aligned_cols=65 Identities=12% Similarity=-0.058 Sum_probs=58.5
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAK 66 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~ 66 (91)
++.++|+..-..+..|.+++..|++.+|+..+++.+.-+|+|+..+..|.+....++...+....
T Consensus 366 al~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 366 ALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence 67889999889999999999999999999999999999999999999999999988887776554
No 109
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.50 E-value=0.00076 Score=49.69 Aligned_cols=71 Identities=14% Similarity=-0.025 Sum_probs=59.5
Q ss_pred ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553 5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK 77 (91)
Q Consensus 5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~ 77 (91)
.+|..+.+|.-.|......|++++|...+++|+.++| +..+...+..+....++..++. ..|.+.+...+.
T Consensus 415 ~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~-~~~~~A~~L~P~ 485 (517)
T PRK10153 415 ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAA-DAYSTAFNLRPG 485 (517)
T ss_pred cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCC
Confidence 4778888999999999999999999999999999999 4788889999988888888774 467777766543
No 110
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.50 E-value=0.00023 Score=52.55 Aligned_cols=63 Identities=10% Similarity=-0.076 Sum_probs=45.6
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRD 64 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~ 64 (91)
||..+|++..-|.|+|.++..-.+.++|+..|++||+|.|+..-++..|...-.-++.++++-
T Consensus 456 AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~ 518 (579)
T KOG1125|consen 456 ALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAV 518 (579)
T ss_pred HHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHH
Confidence 567777777777777777777777777777777777777777666666666666666665553
No 111
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.42 E-value=0.0016 Score=40.64 Aligned_cols=67 Identities=12% Similarity=0.053 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNR---EVKLLQKSLKQLQAESNKRDAKFYANMFARVTK 77 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~ 77 (91)
..+|+..|.++..+|++++|+..|++++.+.|+.. .+...+..+....+...++.. .+.+.....+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~-~~~~Al~~~~~ 104 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE-YYFQALERNPF 104 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCcC
Confidence 56679999999999999999999999999977633 477778888877777777643 45555554433
No 112
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.42 E-value=0.00072 Score=46.86 Aligned_cols=36 Identities=11% Similarity=0.046 Sum_probs=19.5
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
++.+|+++.+++.+|.++...|++++|+..+++++.
T Consensus 62 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 97 (389)
T PRK11788 62 LKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLS 97 (389)
T ss_pred HhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc
Confidence 444555555555555555555555555555555544
No 113
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.41 E-value=0.00022 Score=52.44 Aligned_cols=44 Identities=18% Similarity=0.116 Sum_probs=40.6
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE 45 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~ 45 (91)
+|++++| +..+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus 445 rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 445 KAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 4788999 5889999999999999999999999999999999764
No 114
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.37 E-value=0.00087 Score=41.74 Aligned_cols=42 Identities=26% Similarity=0.082 Sum_probs=38.0
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQ 42 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~ 42 (91)
++|.+-|.++-+|.+|++++--.|+.++|++|+++++++...
T Consensus 68 qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~ 109 (175)
T KOG4555|consen 68 QALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGD 109 (175)
T ss_pred HHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence 357788999999999999999999999999999999999644
No 115
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.36 E-value=0.00075 Score=47.94 Aligned_cols=71 Identities=10% Similarity=0.023 Sum_probs=56.0
Q ss_pred cccccCCCH--HHHHHHHHHHHHhCCHHHHHHHHH--HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 2 VLDCDCHNV--KALYRRAQVYMEIADLILAELDIK--KAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 2 al~~~p~~~--ka~~rrg~a~~~lg~~~~A~~~~~--~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
+++.+|+++ ..+.-.|.+++..|+|++|.+.|+ .+++.+|++.... .+..+....++..++ ...|++-.+.
T Consensus 325 ~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~~~A-~~~~~~~l~~ 399 (409)
T TIGR00540 325 QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDKAEA-AAMRQDSLGL 399 (409)
T ss_pred HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCHHHH-HHHHHHHHHH
Confidence 467899999 778889999999999999999999 5888889876644 888888888777666 3456654433
No 116
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.00047 Score=46.52 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=25.5
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSL 53 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~ 53 (91)
||-++|..+..|-.|+.+++++.+++.+..+++++++++|+.....-.++..
T Consensus 36 aI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 36 AICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW 87 (284)
T ss_pred HHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555544333333333
No 117
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.34 E-value=0.0018 Score=50.59 Aligned_cols=52 Identities=17% Similarity=0.085 Sum_probs=46.7
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQ 57 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~ 57 (91)
.|++-.|++.+|.+|-.+|++++|...++++++++|+|+.+.+.+.-.....
T Consensus 112 ~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 112 YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence 4566689999999999999999999999999999999999988887766666
No 118
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.31 E-value=0.0014 Score=46.55 Aligned_cols=68 Identities=10% Similarity=0.068 Sum_probs=55.9
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMF 72 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf 72 (91)
++.+|+++..++-.|.+++..+++++|...|+++++++|++.. ...+..+....++..++ ...|++-.
T Consensus 321 lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A-~~~~~~~l 388 (398)
T PRK10747 321 IKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEA-AAMRRDGL 388 (398)
T ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHH-HHHHHHHH
Confidence 5678999999999999999999999999999999999999765 34688888888777665 33455433
No 119
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.26 E-value=0.0024 Score=49.40 Aligned_cols=61 Identities=21% Similarity=0.166 Sum_probs=41.4
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 62 (91)
+|+++|.++.||+-+|.+|..+|+.+.|....-.|-.|+|++.+.+..+......++...+
T Consensus 165 vIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 165 VIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 4667777777777777777777777777776666666777776666666666555554444
No 120
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00038 Score=46.96 Aligned_cols=60 Identities=20% Similarity=0.108 Sum_probs=49.6
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC---C-C-CHHHHHHHHHHHHHHHHH
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEAD---P-Q-NREVKLLQKSLKQLQAES 60 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~---p-~-~~~~~~~l~~~~~~~~~~ 60 (91)
+||+++|+.++++|-.|++.+....|++|+..+++++.+- | + -.++...|..++.+....
T Consensus 69 ralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v 133 (284)
T KOG4642|consen 69 RALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEV 133 (284)
T ss_pred HHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccch
Confidence 4789999999999999999999999999999999997763 2 2 236888888877765444
No 121
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.22 E-value=0.0026 Score=43.66 Aligned_cols=60 Identities=15% Similarity=0.000 Sum_probs=40.6
Q ss_pred cccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 4 DCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 4 ~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
..+|...-++...|.++...|++++|+..++++++++|++..+...+..+....++..+.
T Consensus 108 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA 167 (355)
T cd05804 108 PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEG 167 (355)
T ss_pred cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHH
Confidence 345666666666777777777777777777777777777766666666666665555554
No 122
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.21 E-value=0.00041 Score=38.65 Aligned_cols=34 Identities=24% Similarity=0.205 Sum_probs=29.5
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKA 36 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~a 36 (91)
++.+|.++..++-.|.+++.+|+|++|+..|+++
T Consensus 51 ~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 51 LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 3567888899999999999999999999999875
No 123
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.21 E-value=0.0014 Score=49.19 Aligned_cols=61 Identities=10% Similarity=-0.098 Sum_probs=55.2
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 62 (91)
+++.|+.+.-+|.-.|..+-.-.+|++|++.|+.||.++|+|..+...+..++..+....-
T Consensus 67 glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 67 GLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred HhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhh
Confidence 4667888888999999999999999999999999999999999999999999988877654
No 124
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.20 E-value=0.0037 Score=40.39 Aligned_cols=57 Identities=12% Similarity=0.077 Sum_probs=44.2
Q ss_pred ccccCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 034553 3 LDCDCHNVKALYRRAQVYMEIAD----------LILAELDIKKAIEADPQNREVKLLQKSLKQLQAE 59 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~----------~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 59 (91)
...||.+++++++=|.|+..|.+ +++|+.-|+.||.|+|+..++.-.+..+......
T Consensus 18 y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 18 YAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 46799999999999999988854 5789999999999999998887777777666654
No 125
>PRK15331 chaperone protein SicA; Provisional
Probab=97.19 E-value=0.0034 Score=39.94 Aligned_cols=68 Identities=21% Similarity=0.126 Sum_probs=57.3
Q ss_pred cccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034553 4 DCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMF 72 (91)
Q Consensus 4 ~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf 72 (91)
.+.++-..+.|..|.-++..|++++|...|+-...++|.|......|..+.+..+++.++.. .|.-.+
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~-~Y~~A~ 98 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACD-LYAVAF 98 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 45566778899999999999999999999999999999999999999999999999988743 444333
No 126
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.18 E-value=0.0012 Score=50.30 Aligned_cols=61 Identities=15% Similarity=0.054 Sum_probs=52.0
Q ss_pred cccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q 034553 4 DCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRD 64 (91)
Q Consensus 4 ~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~ 64 (91)
.++|-.+-.||-+|..+...|.+++|.+.|..|+.+||++..+...+..+....+...-++
T Consensus 678 ~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~ 738 (799)
T KOG4162|consen 678 KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAE 738 (799)
T ss_pred hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHH
Confidence 4678888899999999999999999999999999999999999999988888887554443
No 127
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.15 E-value=0.0022 Score=49.71 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=17.7
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q 034553 17 AQVYMEIADLILAELDIKKAIEADPQNREVKLLQ 50 (91)
Q Consensus 17 g~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l 50 (91)
|.++..+|+|+.|++.|+++++++|+|+++...+
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gL 142 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGM 142 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 4455555555555555555555555555444443
No 128
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.14 E-value=0.0017 Score=51.01 Aligned_cols=76 Identities=20% Similarity=0.046 Sum_probs=61.3
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhccc
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIAD-LILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDA--KFYANMFARVT 76 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~-~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~mf~~~~ 76 (91)
++|+.||+|.-|++-.|.++..++. .++|..+|..|.+++|+|.-+++.|..+..+.......++ ..|++.+....
T Consensus 27 kvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~ld~~~~~yq~~~l~le 105 (1238)
T KOG1127|consen 27 KVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILDLDRAAKCYQRAVLILE 105 (1238)
T ss_pred HHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhhhhHhHHHHHHHHHhhh
Confidence 4789999999999999999999998 9999999999999999999999999888877433333222 24555554443
No 129
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.14 E-value=0.00056 Score=32.24 Aligned_cols=31 Identities=32% Similarity=0.276 Sum_probs=26.9
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 33 IKKAIEADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 33 ~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
|+++++++|+|..+...+..+-...++..++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 7899999999999999999998877766554
No 130
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.11 E-value=0.0011 Score=45.43 Aligned_cols=55 Identities=16% Similarity=0.058 Sum_probs=45.3
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES 60 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 60 (91)
.|.++..+...|.+++.+|+|++|...+..++..+|+++++...+..+....+..
T Consensus 197 ~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 197 FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 4678899999999999999999999999999999999999888888777776665
No 131
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.09 E-value=0.0022 Score=45.63 Aligned_cols=61 Identities=18% Similarity=0.120 Sum_probs=44.8
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 62 (91)
+|.++|.|+-.+.+||.||+++..|..|..||+.|+.||-....+......++..++...+
T Consensus 123 ~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 123 AIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 5778888888899999999999999999999999999886655444444444444444333
No 132
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.09 E-value=0.00047 Score=46.38 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=41.6
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR 44 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~ 44 (91)
+++++-|.+..+|||.|....+.|+++.|...|++.++++|.+.
T Consensus 20 qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 20 QALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred HHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 47889999999999999999999999999999999999999875
No 133
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.09 E-value=0.005 Score=41.89 Aligned_cols=69 Identities=10% Similarity=0.073 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR---EVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD 78 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~ 78 (91)
-+.|+|++|.+++.+|+|++|...|..+.+-.|.++ +..-.|..+...++...++ ...++.+.++.++-
T Consensus 177 ~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A-~atl~qv~k~YP~t 248 (262)
T COG1729 177 TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA-CATLQQVIKRYPGT 248 (262)
T ss_pred cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHCCCC
Confidence 467899999999999999999999999999888765 5666666666666665554 34566666666554
No 134
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.07 E-value=0.0023 Score=47.28 Aligned_cols=71 Identities=17% Similarity=0.170 Sum_probs=47.8
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
||++.|..++-|+.+|.++-+.|++.+|...++.|..+|+.|.-+...-.+..-+.+...+++. .-++|.+
T Consensus 220 aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~--~~~~Ftr 290 (517)
T PF12569_consen 220 AIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEK--TASLFTR 290 (517)
T ss_pred HHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHH--HHHhhcC
Confidence 6778888888888888888888888888888888888888776555444444333344444322 2344544
No 135
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.07 E-value=0.00028 Score=51.14 Aligned_cols=44 Identities=25% Similarity=0.181 Sum_probs=41.7
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR 44 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~ 44 (91)
+||+++|+++.-+-.|+++++..++|-.|+.|+.+|++++|...
T Consensus 29 KaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~ 72 (476)
T KOG0376|consen 29 KAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYI 72 (476)
T ss_pred HHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhh
Confidence 47999999999999999999999999999999999999999864
No 136
>PRK11906 transcriptional regulator; Provisional
Probab=97.04 E-value=0.00092 Score=48.50 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=41.3
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR 44 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~ 44 (91)
+|+.++|+++.+||.+|.++...|+.++|+..++++++++|.-.
T Consensus 363 rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 363 QAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred HHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 47889999999999999999999999999999999999999754
No 137
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=97.03 E-value=0.0017 Score=31.52 Aligned_cols=29 Identities=21% Similarity=0.158 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
+.|.++|-+-+..++|+.|+.||+++|++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46889999999999999999999999987
No 138
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.00 E-value=0.0026 Score=44.66 Aligned_cols=73 Identities=16% Similarity=0.136 Sum_probs=60.0
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR-EVKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
+|++-||.++.|=.-+|.+.+..|+|+.|++.++++++-||+.- ++...|..+...++...+.. ...+++...
T Consensus 205 kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~-~fL~~~~~~ 278 (389)
T COG2956 205 KALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL-NFLRRAMET 278 (389)
T ss_pred HHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHc
Confidence 46788999999999999999999999999999999999999864 78888888888887766642 344444433
No 139
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.99 E-value=0.013 Score=35.55 Aligned_cols=57 Identities=23% Similarity=0.170 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDA 65 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 65 (91)
...++.+.+..+...|++++|+..+++++.++|-+..+...+-++....+....+..
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~ 117 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALR 117 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 456777888899999999999999999999999999999998888888888776643
No 140
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.93 E-value=0.0025 Score=44.80 Aligned_cols=60 Identities=18% Similarity=0.136 Sum_probs=46.2
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN 61 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~ 61 (91)
|+.++|+|+.++.+.|+....-.+.-+|-..|-+||.++|.|.++.....+.........
T Consensus 142 AlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~plV~~iD 201 (472)
T KOG3824|consen 142 ALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTTPLVSAID 201 (472)
T ss_pred HHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccchHHHHHH
Confidence 567888888888888888888888888888888888888888877776665555444443
No 141
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.92 E-value=0.006 Score=41.40 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSL 53 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~ 53 (91)
|..+.+++..|.++..+|++++|+..|+++++..|++..+.....++
T Consensus 214 ~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 214 PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 34688999999999999999999999999999999988766655554
No 142
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.91 E-value=0.0017 Score=43.57 Aligned_cols=43 Identities=23% Similarity=0.164 Sum_probs=31.6
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR 44 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~ 44 (91)
++++||.+--|+.+||.+++--|+|.-|.+++.+-..-||+|+
T Consensus 125 ~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 125 VLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred HhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 4567777777777777777777777777777777777777765
No 143
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.90 E-value=0.0045 Score=45.60 Aligned_cols=62 Identities=18% Similarity=0.088 Sum_probs=53.3
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
||.-|.....|+|..|..+..+|++++|++.|-+...+--++.++...+..+...+....++
T Consensus 516 al~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 516 ALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQA 577 (840)
T ss_pred HHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHH
Confidence 46667788999999999999999999999999998888888889888888888888776654
No 144
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.87 E-value=0.00027 Score=49.57 Aligned_cols=58 Identities=12% Similarity=0.008 Sum_probs=43.7
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES 60 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 60 (91)
||+++|+..+.|-.||.++..+|++++|..++..+++++-+ .++..++..+....+..
T Consensus 174 A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d-E~~~a~lKeV~p~a~ki 231 (377)
T KOG1308|consen 174 AIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD-EANSATLKEVFPNAGKI 231 (377)
T ss_pred hhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc-HHHHHHHHHhccchhhh
Confidence 67888999999999999999999999999999998888743 44555555555544433
No 145
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.87 E-value=0.0022 Score=45.20 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=49.4
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES 60 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 60 (91)
.+|.++|.+..-|-.||.+++.+.....|+.||..+++++|+...-.......+..++..
T Consensus 139 ~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 139 SAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred cccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence 479999999999999999999999999999999999999998765444444444444443
No 146
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.86 E-value=0.0025 Score=43.69 Aligned_cols=62 Identities=6% Similarity=-0.132 Sum_probs=48.6
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHH----HHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREV----KLLQKSLKQLQAESNKR 63 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~----~~~l~~~~~~~~~~~~~ 63 (91)
+++++|+++.++...|.+++..|++++|+..+++++.+.|.+... ...+..+....++..+.
T Consensus 140 al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 140 ALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 578899999999999999999999999999999999998854322 22455555555555554
No 147
>PRK10941 hypothetical protein; Provisional
Probab=96.86 E-value=0.0052 Score=41.93 Aligned_cols=48 Identities=17% Similarity=0.253 Sum_probs=41.8
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLL 49 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~ 49 (91)
.+.++|+++.-+--||.++.++|-+..|+.|++.-++..|+++.+...
T Consensus 207 ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 207 LLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 467899999888889999999999999999999999999998754433
No 148
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.84 E-value=0.0019 Score=43.37 Aligned_cols=44 Identities=11% Similarity=0.039 Sum_probs=37.6
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR 44 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~ 44 (91)
++|.+.|.-+.++...|.-+..-|+|+.|.+.|+.++++||.+.
T Consensus 90 QaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~ 133 (297)
T COG4785 90 QALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 133 (297)
T ss_pred hhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence 36778888888888888888888899999999999999988764
No 149
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.84 E-value=0.011 Score=35.68 Aligned_cols=63 Identities=14% Similarity=0.035 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEADPQNR---EVKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
+++|.+|-++-.+|+.++|+..|+++++..+... .+.-.+......+++..+... .++.....
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~-~L~~~~~~ 67 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALA-LLEEALEE 67 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHH
Confidence 4566677777777777777777777766544332 344445555555555555432 33444433
No 150
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=96.81 E-value=0.0085 Score=28.68 Aligned_cols=34 Identities=18% Similarity=-0.048 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHH--HHHHHHHCCCC
Q 034553 10 VKALYRRAQVYMEIADLILAELD--IKKAIEADPQN 43 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~--~~~al~l~p~~ 43 (91)
++.++..|..+...|++++|+.. |.-+..++|.|
T Consensus 1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 35788889999999999999999 55888898875
No 151
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.79 E-value=0.017 Score=37.38 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR---EVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD 78 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~ 78 (91)
.++++|..|...+..|+|++|+..|+.+....|... .+.-.+..+.-..+++..+. ..+.++....+..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~-~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAI-AAYERFIKLYPNS 75 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHH-HHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCCCC
Confidence 467888888888888888888888888888877754 45555555555556665552 3466666665543
No 152
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.79 E-value=0.0059 Score=28.98 Aligned_cols=29 Identities=24% Similarity=0.132 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
.++...|.++..+|++++|+..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 57889999999999999999999999986
No 153
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.78 E-value=0.013 Score=41.57 Aligned_cols=62 Identities=13% Similarity=0.087 Sum_probs=47.5
Q ss_pred cccccCCCHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKA-LYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 2 al~~~p~~~ka-~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
+.+.+|++.-+ ....+..+...|+++.|+..++++++.+|++..+...+..+....++..+.
T Consensus 144 A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 144 AAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 34567777533 345588889999999999999999999999988888887777766665543
No 154
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.78 E-value=0.0014 Score=35.78 Aligned_cols=32 Identities=19% Similarity=0.219 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
.-+.+++..|.++..+|++++|+..+++++++
T Consensus 44 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 44 DTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34778999999999999999999999999986
No 155
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.76 E-value=0.0065 Score=47.53 Aligned_cols=57 Identities=26% Similarity=0.290 Sum_probs=39.6
Q ss_pred cccccCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHN-VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQA 58 (91)
Q Consensus 2 al~~~p~~-~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~ 58 (91)
+++.+|++ +-++++.|+.++..|+++.|+..|+++++..|++.+....|..+.....
T Consensus 333 s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 333 SLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred HHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence 34556665 6677777777777777777777777777777777777777776666653
No 156
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.75 E-value=0.003 Score=42.24 Aligned_cols=43 Identities=21% Similarity=0.167 Sum_probs=31.0
Q ss_pred ccccCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH
Q 034553 3 LDCDCHNVKA---LYRRAQVYMEIADLILAELDIKKAIEADPQNRE 45 (91)
Q Consensus 3 l~~~p~~~ka---~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~ 45 (91)
+...|..+-+ .+..|.+++.+++|++|+..+++.+++.|+++.
T Consensus 59 ~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 59 DNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred HHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 3445555444 478888888888888888888888888887653
No 157
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.74 E-value=0.0054 Score=47.93 Aligned_cols=78 Identities=10% Similarity=0.127 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhh
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN-REVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVG 86 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~g 86 (91)
--+.++|..|.++..+|+|+.|...|..+++.+|++ .-....|..++-...+.... ...+.+++...++..++..-+|
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s-~~~fEkv~k~~p~~~etm~iLG 383 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEES-KFCFEKVLKQLPNNYETMKILG 383 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHH-HHHHHHHHHhCcchHHHHHHHH
Confidence 346789999999999999999999999999999998 45566666666666666655 3467777777776666655444
No 158
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.74 E-value=0.0072 Score=42.97 Aligned_cols=79 Identities=19% Similarity=0.185 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc--hh
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE----VKLLQKSLKQLQAESNKRDAKFYANMFARVTKDS--SV 81 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~--~~ 81 (91)
+++..++..|..+...|++++|...++++++..|++.. .......+. .....+......++....+... .+
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~---~~~~~~~~~~~e~~lk~~p~~~~~~l 337 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLK---PEDNEKLEKLIEKQAKNVDDKPKCCI 337 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcC---CCChHHHHHHHHHHHHhCCCChhHHH
Confidence 68999999999999999999999999999999999874 222222222 1111222345667777777776 66
Q ss_pred hhhhhhcc
Q 034553 82 ATKVGYFA 89 (91)
Q Consensus 82 ~~~~g~f~ 89 (91)
...+||..
T Consensus 338 l~sLg~l~ 345 (409)
T TIGR00540 338 NRALGQLL 345 (409)
T ss_pred HHHHHHHH
Confidence 77778754
No 159
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.72 E-value=0.0018 Score=45.83 Aligned_cols=79 Identities=16% Similarity=0.146 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhhh
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVGY 87 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~g~ 87 (91)
.-.+.||+.|.+....||+.-|...|+-+|.-||++.++.+.|..+..+.+...++ +..+...=+..+.+.+++.|++.
T Consensus 393 ~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~A-rsll~~A~s~~P~m~E~~~Nl~~ 471 (478)
T KOG1129|consen 393 QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGA-RSLLNAAKSVMPDMAEVTTNLQF 471 (478)
T ss_pred hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHH-HHHHHHhhhhCccccccccceeE
Confidence 45678999999999999999999999999999999999999999999888777665 44555555556666777776653
No 160
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.72 E-value=0.014 Score=45.38 Aligned_cols=70 Identities=11% Similarity=0.107 Sum_probs=49.4
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT 76 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~ 76 (91)
||++..+..-++.++...|++.+|.+.+++.+...|.|..++..+..+....+...+++. .++......+
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~-~~k~a~~l~P 481 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQ-ELKAVESLAP 481 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHhhhCC
Confidence 567777777777777777777777777777777777777777777777777777666643 3454444433
No 161
>PRK15331 chaperone protein SicA; Provisional
Probab=96.69 E-value=0.0054 Score=39.04 Aligned_cols=41 Identities=15% Similarity=-0.143 Sum_probs=33.7
Q ss_pred ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH
Q 034553 5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE 45 (91)
Q Consensus 5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~ 45 (91)
+||.|++-|+.+|.++..+++|+.|+..|-.+..++++|+.
T Consensus 66 ~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~ 106 (165)
T PRK15331 66 YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR 106 (165)
T ss_pred hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Confidence 57888888888888888888888888888888888777653
No 162
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.68 E-value=0.007 Score=43.40 Aligned_cols=64 Identities=17% Similarity=0.046 Sum_probs=58.3
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDA 65 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 65 (91)
+|..+|.+...+.-.+..++..++++.|+...+++.++.|++...+..|..+...+++.+.+-.
T Consensus 226 aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 226 ALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALL 289 (395)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 4667899999999999999999999999999999999999999999999999999999888743
No 163
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.65 E-value=0.032 Score=37.37 Aligned_cols=70 Identities=10% Similarity=-0.046 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVK---LLQKSLKQLQAESNKRDAKFYANMFARVTKD 78 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~ 78 (91)
..+..+|..|...+..|+|++|+..|+.++...|..+.+. -.+..+.-..+++.++. ..++++....+..
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~-~~~e~fi~~~P~~ 102 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQ-AAIDRFIRLNPTH 102 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHhCcCC
Confidence 4688899999999999999999999999999999987544 55566666667776653 4567777776654
No 164
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.64 E-value=0.005 Score=48.52 Aligned_cols=62 Identities=13% Similarity=0.053 Sum_probs=52.7
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
|++.+|.+..+|...|.+|...|.|..|++.|.+|-.++|.+.-.+--...++..++++++.
T Consensus 588 ALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 588 ALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred HhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence 68899999999999999999999999999999999999999876655555666666666553
No 165
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.50 E-value=0.03 Score=34.85 Aligned_cols=39 Identities=18% Similarity=0.093 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE 45 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~ 45 (91)
|--..|.+.+|-+++..++|++|+..+++.++|+|+++.
T Consensus 44 ~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 44 EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 345678899999999999999999999999999998763
No 166
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.50 E-value=0.0065 Score=47.56 Aligned_cols=42 Identities=10% Similarity=-0.033 Sum_probs=29.6
Q ss_pred cccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH
Q 034553 4 DCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE 45 (91)
Q Consensus 4 ~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~ 45 (91)
..+|.+.+++.+...++...+++++|+..++.+++..|+...
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~ 66 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS 66 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee
Confidence 456777777777777777777777777777777777766543
No 167
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.47 E-value=0.016 Score=35.01 Aligned_cols=56 Identities=14% Similarity=0.106 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHH
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQ---NREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~---~~~~~~~l~~~~~~~~~~~~~ 63 (91)
.-..+++.+|.++..+|++++|+..++.++.-.|+ +..+...+..+-...++.+++
T Consensus 36 ~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eA 94 (120)
T PF12688_consen 36 DRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEA 94 (120)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHH
Confidence 34679999999999999999999999999998888 556665555555555555443
No 168
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=96.43 E-value=0.012 Score=29.41 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=23.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 14 YRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 14 ~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
+.+|.+|+.+|+++.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5689999999999999999999995
No 169
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.40 E-value=0.045 Score=35.42 Aligned_cols=38 Identities=18% Similarity=0.064 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR 44 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~ 44 (91)
|--.+|.+..|.+++..|+|++|+..+++.++..|+++
T Consensus 39 ~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 39 PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 34578999999999999999999999999999999976
No 170
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.35 E-value=0.0062 Score=37.90 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=38.3
Q ss_pred ccccCCCHH---HHHHHHHHHHHhCC---------------HHHHHHHHHHHHHHCCCCHHHHH
Q 034553 3 LDCDCHNVK---ALYRRAQVYMEIAD---------------LILAELDIKKAIEADPQNREVKL 48 (91)
Q Consensus 3 l~~~p~~~k---a~~rrg~a~~~lg~---------------~~~A~~~~~~al~l~p~~~~~~~ 48 (91)
|+++|.+++ |+|++|.+++.+.. ...|..+|+.++..-|++.-+..
T Consensus 74 irLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 74 IRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 577787665 69999999999988 88999999999999998874443
No 171
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.32 E-value=0.0046 Score=46.05 Aligned_cols=58 Identities=16% Similarity=-0.001 Sum_probs=46.9
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAE 59 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 59 (91)
||++||...||||+++.++..++.+.+|++....+....|.+.........+...+..
T Consensus 437 Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~rDi~a 494 (758)
T KOG1310|consen 437 ALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCLPRDISA 494 (758)
T ss_pred hccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhccccchHH
Confidence 7899999999999999999999999999988887777888777655555444444443
No 172
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.32 E-value=0.033 Score=33.97 Aligned_cols=59 Identities=17% Similarity=0.097 Sum_probs=44.2
Q ss_pred ccCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHH
Q 034553 5 CDCHN---VKALYRRAQVYMEIADLILAELDIKKAIEADPQNR---EVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 5 ~~p~~---~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~~~~~~~~ 63 (91)
-+|+. ..+.+.+|.+++..|++++|+..|+.++...|++. .++-.|..+....+.+.++
T Consensus 40 ~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~A 104 (145)
T PF09976_consen 40 DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEA 104 (145)
T ss_pred HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 45666 67889999999999999999999999999876653 3444555565555555554
No 173
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.24 E-value=0.037 Score=41.02 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLK 54 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~ 54 (91)
++....+-.||..++.+|++++|...|...++.+|+|......+..+.
T Consensus 35 ~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 35 LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 345667778999999999999999999999999999998888887776
No 174
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.19 E-value=0.071 Score=36.48 Aligned_cols=59 Identities=17% Similarity=0.118 Sum_probs=48.9
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN 61 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~ 61 (91)
++.-+++.+||...+..|+..|+|+.|.=.++.++-+.|-++.....+..+.--++...
T Consensus 147 L~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~e 205 (289)
T KOG3060|consen 147 LDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAE 205 (289)
T ss_pred HHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH
Confidence 34567889999999999999999999999999999999999888777777766665533
No 175
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.026 Score=39.93 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE 45 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~ 45 (91)
|+--|.+||.|.+.+|+|..|+.|+.+|+.++|.+..
T Consensus 118 navLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~K 154 (390)
T KOG0551|consen 118 NAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLK 154 (390)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 4556899999999999999999999999999999863
No 176
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.12 E-value=0.057 Score=33.78 Aligned_cols=53 Identities=19% Similarity=0.098 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 62 (91)
++.+=+.|.++...|+.+.|++-|.+++.+-|.++++.+.........+...+
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ 95 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEE 95 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHH
Confidence 45677899999999999999999999999999998887777666555544433
No 177
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.02 Score=41.74 Aligned_cols=44 Identities=14% Similarity=0.063 Sum_probs=24.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 034553 14 YRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQ 57 (91)
Q Consensus 14 ~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~ 57 (91)
...|.++...+.+.+|++.|..||.+||+|......++++++..
T Consensus 475 ~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 475 NHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSD 518 (564)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhcc
Confidence 33444444555555555556666666666555555555555444
No 178
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.12 E-value=0.069 Score=37.00 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=53.9
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR---EVKLLQKSLKQLQAESNKRDAKFYANMFARVTK 77 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~ 77 (91)
++..||.++.+-..+|.+++.+|+..+|++.++.++...|... .+.-.|..+...--....+.+.....+.....+
T Consensus 278 i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL~Ys~~~~~k~~l~~~ia~~~~ 356 (366)
T KOG2796|consen 278 ILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYELEYSRSMQKKQALLEAVAGKEG 356 (366)
T ss_pred ccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHhccCC
Confidence 5788999999999999999999999999999999999999754 333344444333322222334445555554444
No 179
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=96.05 E-value=0.09 Score=32.65 Aligned_cols=54 Identities=20% Similarity=0.237 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 62 (91)
-......++...+..|+|.-|....+.++..+|+|.+++.....+-..+....+
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 356778899999999999999999999999999999999999888888777654
No 180
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=0.057 Score=37.13 Aligned_cols=54 Identities=15% Similarity=0.056 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES 60 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 60 (91)
|..+.-+...+.+++.+|+|++|...++.+|.-+|++++....+-.+....+..
T Consensus 204 ~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 204 PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 557788889999999999999999999999999999998888877776666555
No 181
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.97 E-value=0.011 Score=44.59 Aligned_cols=54 Identities=11% Similarity=0.145 Sum_probs=46.7
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQ 55 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~ 55 (91)
+|.++..-+-.+|-.|.+++.+.+.+.|++.|+.|++++|++.++.+.|..+.=
T Consensus 668 ~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 668 ALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 455666667788999999999999999999999999999999999888876654
No 182
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.03 Score=38.32 Aligned_cols=76 Identities=9% Similarity=0.007 Sum_probs=57.4
Q ss_pred cccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553 4 DCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS 80 (91)
Q Consensus 4 ~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~ 80 (91)
+++..+..-+.+.+++++..|+|-++++++..+|..+|.|..+.-...++........+++. -+.+.+...++..+
T Consensus 224 eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~-D~~~vL~ldpslas 299 (329)
T KOG0545|consen 224 ELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKA-DLQKVLELDPSLAS 299 (329)
T ss_pred HHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHH-HHHHHHhcChhhHH
Confidence 34445566788999999999999999999999999999998777766666666666666533 45666666554433
No 183
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.87 E-value=0.025 Score=38.61 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=41.6
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREV 46 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~ 46 (91)
.|.++|.++.-+--||.+|.++|-+..|+.|+...++.-|+++.+
T Consensus 207 ~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 207 LLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 478899999999999999999999999999999999999998754
No 184
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.82 E-value=0.093 Score=38.51 Aligned_cols=70 Identities=16% Similarity=0.011 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK 77 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~ 77 (91)
|...-++|-+++.++..|.+++|...++..++..|+|.-.......+.-..+...++. +.++++....+.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~-e~~~kal~l~P~ 372 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAI-ERLKKALALDPN 372 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHhcCCC
Confidence 4455566666666666666666666666666666666655555555555555444442 244555544443
No 185
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=95.66 E-value=0.02 Score=25.10 Aligned_cols=24 Identities=21% Similarity=0.094 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHH
Q 034553 11 KALYRRAQVYMEIADLILAELDIK 34 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~ 34 (91)
.+++.+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999998875
No 186
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.30 E-value=0.11 Score=38.50 Aligned_cols=61 Identities=15% Similarity=0.057 Sum_probs=51.8
Q ss_pred cccccCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIAD-LILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~-~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 62 (91)
+|..+|+++.-|.--|.-.+..+. .+.|...|.++|..+|+++.++...-+++-.--....
T Consensus 131 ~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~~Kl~ 192 (568)
T KOG2396|consen 131 MLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMELMYAEKLR 192 (568)
T ss_pred HHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999998887 9999999999999999999988887776655444433
No 187
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=95.26 E-value=0.084 Score=32.18 Aligned_cols=53 Identities=11% Similarity=0.046 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
..+.+|+|.+++..|+|++|+..++.+ .-.|-.+.+...+..+....++..++
T Consensus 85 ~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A 137 (145)
T PF09976_consen 85 PLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEA 137 (145)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHH
Confidence 568999999999999999999999762 22233345666677777766666655
No 188
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.078 Score=39.68 Aligned_cols=61 Identities=16% Similarity=0.063 Sum_probs=53.3
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
.+..|+.+-.||-.|.-|+.+|.+++|...|.++-.+||....++-..+..-.-.++..++
T Consensus 305 V~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQA 365 (611)
T KOG1173|consen 305 VDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQA 365 (611)
T ss_pred HHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHH
Confidence 4678999999999999999999999999999999999999999988888877766666654
No 189
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=95.20 E-value=0.041 Score=42.15 Aligned_cols=59 Identities=14% Similarity=0.076 Sum_probs=53.8
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES 60 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 60 (91)
+|+.-|++.|-|.-+|+++..+++.+.|...|..++++-|+...++-.|.+++.+...-
T Consensus 677 ~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~ 735 (913)
T KOG0495|consen 677 ALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQL 735 (913)
T ss_pred HHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcch
Confidence 57788999999999999999999999999999999999999999999999888877644
No 190
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.17 E-value=0.019 Score=41.23 Aligned_cols=42 Identities=14% Similarity=0.257 Sum_probs=35.6
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN 43 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~ 43 (91)
++++.|+..++|+.++.+|..+|+|+.|+..++.+--+.+.+
T Consensus 260 av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~ 301 (395)
T PF09295_consen 260 AVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKD 301 (395)
T ss_pred HHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCcc
Confidence 567899999999999999999999999998888665544333
No 191
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.78 E-value=0.15 Score=37.94 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 62 (91)
+++..++..+.+|..+.+...|++.+..+..+-|+++.+...|..+....+...+
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksq 610 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQ 610 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhh
Confidence 5789999999999999999999999999999999999999988888766555443
No 192
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.67 E-value=0.34 Score=34.41 Aligned_cols=68 Identities=15% Similarity=0.159 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 13 LYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 13 ~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
-.+.|.-....|+.+.|...|..|+.++|.++++...+......-++.-+++. .|-+.+...++.++.
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq-~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQ-CYVKALTISPGNSEA 186 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhh-hhheeeeeCCCchHH
Confidence 44556667889999999999999999999999999999998888777766654 444445544444433
No 193
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.61 E-value=0.19 Score=39.46 Aligned_cols=84 Identities=7% Similarity=-0.038 Sum_probs=51.1
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhh
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVA 82 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~ 82 (91)
++..|+-.-|....|.++.++|.+++|...++..-.+-|+|......+..+...++...+. -..|.+...+.++ -+
T Consensus 36 lkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~-~~~Ye~~~~~~P~---ee 111 (932)
T KOG2053|consen 36 LKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA-VHLYERANQKYPS---EE 111 (932)
T ss_pred HHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH-HHHHHHHHhhCCc---HH
Confidence 4456666666667777777777777777555554445555666666666666666665554 2355665555543 45
Q ss_pred hhhhhccc
Q 034553 83 TKVGYFAC 90 (91)
Q Consensus 83 ~~~g~f~~ 90 (91)
+-++||-|
T Consensus 112 ll~~lFma 119 (932)
T KOG2053|consen 112 LLYHLFMA 119 (932)
T ss_pred HHHHHHHH
Confidence 55666654
No 194
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=94.50 E-value=0.11 Score=39.47 Aligned_cols=75 Identities=9% Similarity=-0.014 Sum_probs=66.3
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK 77 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~ 77 (91)
+|...|.+++.+--+|..+..+|+-++|....+.++..||.+...+..++.+.+.-+++.++-+ -|++.+...+.
T Consensus 33 iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK-cy~nAl~~~~d 107 (700)
T KOG1156|consen 33 ILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK-CYRNALKIEKD 107 (700)
T ss_pred HHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH-HHHHHHhcCCC
Confidence 4567899999999999999999999999999999999999999999999999999999998754 67777665433
No 195
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=94.44 E-value=0.071 Score=40.94 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=56.8
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMF 72 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf 72 (91)
++.++|++..+|.+.+.+|+.+++-.+|...+++|++.+-.+-.++...-.+...+++..++ ...|.++.
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda-~~A~~rll 614 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDA-IKAYHRLL 614 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHH-HHHHHHHH
Confidence 46789999999999999999999999999999999999877767777666666666666655 33455554
No 196
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.33 E-value=0.45 Score=33.05 Aligned_cols=76 Identities=13% Similarity=0.084 Sum_probs=54.3
Q ss_pred cccccCCCHHHHHHHHHHHHHhCC------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIAD------------LILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYA 69 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~------------~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 69 (91)
.++-+|.++++|.......-.+-. .+.-+..|++||+.+|++..++..+-++-..+....+ -...++
T Consensus 11 ~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~-l~~~we 89 (321)
T PF08424_consen 11 RVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEK-LAKKWE 89 (321)
T ss_pred HHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH-HHHHHH
Confidence 356789999999998877655543 5677889999999999988777776666666653333 344577
Q ss_pred HhhhcccCC
Q 034553 70 NMFARVTKD 78 (91)
Q Consensus 70 ~mf~~~~~~ 78 (91)
++....++.
T Consensus 90 ~~l~~~~~~ 98 (321)
T PF08424_consen 90 ELLFKNPGS 98 (321)
T ss_pred HHHHHCCCC
Confidence 777665553
No 197
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=94.23 E-value=0.15 Score=37.83 Aligned_cols=58 Identities=19% Similarity=0.093 Sum_probs=40.8
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-----CCCHHH---HHHHHHHHHHHHHHHHH
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEAD-----PQNREV---KLLQKSLKQLQAESNKR 63 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~-----p~~~~~---~~~l~~~~~~~~~~~~~ 63 (91)
+|.-+-.+.++|.+|+..|+|++|...|++|+++- .+.+++ ...+..+.....+..++
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea 344 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEA 344 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHH
Confidence 45566789999999999999999999999999973 233333 33444444444444444
No 198
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.22 E-value=0.59 Score=32.12 Aligned_cols=42 Identities=12% Similarity=0.047 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHH
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKL 48 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~ 48 (91)
|++.+.---.|.-+...|.|++|++.|+..++-||.|..++.
T Consensus 83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~K 124 (289)
T KOG3060|consen 83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRK 124 (289)
T ss_pred CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHH
Confidence 555555555556666666666666666666666666555444
No 199
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.17 E-value=0.12 Score=31.25 Aligned_cols=37 Identities=11% Similarity=-0.127 Sum_probs=32.0
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
++.+||-+..+|...-.++..+|++.+|+..|++...
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5778999999999999999999999999999998754
No 200
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.28 Score=33.93 Aligned_cols=84 Identities=17% Similarity=0.183 Sum_probs=67.0
Q ss_pred cccccCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553 2 VLDCDCHNVKALYRRAQVYME-IADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS 80 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~-lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~ 80 (91)
+|.++|.|--.|.-|-.++-. ..+..+-+..+....+-+|.|-.++.-.+.+-..++...-.|-...+.|+...++.++
T Consensus 69 ~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYH 148 (318)
T KOG0530|consen 69 AIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYH 148 (318)
T ss_pred HHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchh
Confidence 578899888887666555544 4577888888999999999999999999999999987665678889999998887777
Q ss_pred hhhhh
Q 034553 81 VATKV 85 (91)
Q Consensus 81 ~~~~~ 85 (91)
+=...
T Consensus 149 aWshR 153 (318)
T KOG0530|consen 149 AWSHR 153 (318)
T ss_pred hhHHH
Confidence 64443
No 201
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.12 E-value=0.63 Score=33.36 Aligned_cols=66 Identities=15% Similarity=0.159 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARV 75 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~ 75 (91)
.++.+..++.+|..+..++.|+..|..+++.-|.+...+-.+.++.+.+.++... .+.|+...+..
T Consensus 255 ~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a-~~lYk~vlk~~ 320 (478)
T KOG1129|consen 255 HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDA-LQLYKLVLKLH 320 (478)
T ss_pred chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHH-HHHHHHHHhcC
Confidence 5677777888888888888888888888888888888888888888888877765 34567666553
No 202
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.09 E-value=0.36 Score=33.00 Aligned_cols=48 Identities=17% Similarity=0.137 Sum_probs=41.4
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSL 53 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~ 53 (91)
.|.-++++|..|.+...+|+-++|...|+.+.+--|+...+......+
T Consensus 211 s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 211 SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 355678899999999999999999999999999999988776655444
No 203
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.04 E-value=0.9 Score=30.94 Aligned_cols=69 Identities=9% Similarity=-0.006 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR---EVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD 78 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~ 78 (91)
.+.-||..|+..+.-|+|++|+..|+.+..-.|.++ .+.-.+.-+.-+.+++..+. ....++....++.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~-~~~drFi~lyP~~ 104 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLAL-AYIDRFIRLYPTH 104 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHH-HHHHHHHHhCCCC
Confidence 577899999999999999999999999999988765 44445555555555555553 2455555665543
No 204
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.25 E-value=0.27 Score=28.04 Aligned_cols=34 Identities=18% Similarity=0.074 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQ 42 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~ 42 (91)
..-|+..+|..+...|++++|+..+++++.+...
T Consensus 40 ~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 40 LAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999998543
No 205
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.94 E-value=0.71 Score=31.87 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANM 71 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~m 71 (91)
...+++...+.++...|+++.++.++++.+.++|-+..+...+-......+...... ..|+++
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai-~~y~~l 213 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAI-RAYRQL 213 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHH-HHHHHH
Confidence 457888899999999999999999999999999999888877777666665555442 234444
No 206
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.87 E-value=0.64 Score=33.68 Aligned_cols=55 Identities=13% Similarity=0.012 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDA 65 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 65 (91)
..-...|.+++++|+|++|+..|.-+..-+.-+.++...|.-+.--++.+.+++.
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999988766677888888888888888887654
No 207
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=92.86 E-value=0.28 Score=30.10 Aligned_cols=31 Identities=19% Similarity=0.108 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
++.+-|.||.++..+|..++|+..|+++-+.
T Consensus 99 WIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 99 WIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 5678899999999999999999999998874
No 208
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=92.72 E-value=0.51 Score=36.51 Aligned_cols=69 Identities=12% Similarity=0.078 Sum_probs=54.2
Q ss_pred cccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 4 DCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 4 ~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
+.-..++..+.-.|..+..-..++.|.+.|.++++++|++-+++..+-+.....+...+. + ..-++|..
T Consensus 811 kkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~-k-ev~~~c~~ 879 (913)
T KOG0495|consen 811 KKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQ-K-EVLKKCET 879 (913)
T ss_pred HhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHH-H-HHHHHHhc
Confidence 334467778888899999999999999999999999999999999998888877754432 2 23444544
No 209
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=92.13 E-value=0.83 Score=31.08 Aligned_cols=73 Identities=8% Similarity=-0.013 Sum_probs=45.7
Q ss_pred ccccCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553 3 LDCDCHNVKALYRRAQVYME-IADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT 76 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~-lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~ 76 (91)
++..+.....|..-|...+. .++.+.|...|+.+++.-|.+..++...-.....+++.... +..+.+....++
T Consensus 28 ~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~a-R~lfer~i~~l~ 101 (280)
T PF05843_consen 28 RKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNA-RALFERAISSLP 101 (280)
T ss_dssp HCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHH-HHHHHHHCCTSS
T ss_pred HcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHH-HHHHHHHHHhcC
Confidence 33344567778888888777 45666699999999999999887776665555555544332 445555554443
No 210
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.99 E-value=0.094 Score=37.10 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=44.7
Q ss_pred cccccCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYR-RAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLK 54 (91)
Q Consensus 2 al~~~p~~~ka~~r-rg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~ 54 (91)
++..+|.|++-|.- .+.-+...++++.|...|.+++.++|+++.++.+.-+.+
T Consensus 133 ~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~E 186 (435)
T COG5191 133 CLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRME 186 (435)
T ss_pred HHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHHH
Confidence 57789999999887 455678899999999999999999999998877665544
No 211
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.99 E-value=1.2 Score=28.37 Aligned_cols=58 Identities=10% Similarity=-0.174 Sum_probs=50.2
Q ss_pred ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553 5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 62 (91)
+.|+++..-.--|..++..|+|.+|+..|+.+.+-.|..+-++..+.-|-..++....
T Consensus 39 LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 39 LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 5799999999999999999999999999999988889888888888888776655544
No 212
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=91.99 E-value=0.54 Score=20.44 Aligned_cols=30 Identities=23% Similarity=0.213 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 034553 24 ADLILAELDIKKAIEADPQNREVKLLQKSL 53 (91)
Q Consensus 24 g~~~~A~~~~~~al~l~p~~~~~~~~l~~~ 53 (91)
|+++.|...|++++...|.+..++......
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 578899999999999999888887766544
No 213
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.97 E-value=1.1 Score=31.21 Aligned_cols=56 Identities=16% Similarity=0.044 Sum_probs=46.3
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHH
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQ--NREVKLLQKSLKQLQA 58 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~--~~~~~~~l~~~~~~~~ 58 (91)
+..||++..+-+..|..+...|++++|.+.+-..++.|-. +..+++.+-.+-...+
T Consensus 229 ~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 229 LAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 4569999999999999999999999999999999987654 4567777766666555
No 214
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.91 E-value=0.84 Score=34.66 Aligned_cols=52 Identities=17% Similarity=0.038 Sum_probs=36.9
Q ss_pred ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHH
Q 034553 5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR--EVKLLQKSLKQL 56 (91)
Q Consensus 5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~--~~~~~l~~~~~~ 56 (91)
+|+...+.+.-+|++++++|+|++|+..|+...+-+.++. +++..+..+...
T Consensus 105 ~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~ 158 (652)
T KOG2376|consen 105 LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA 158 (652)
T ss_pred ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 4666778888899999999999999999998877654433 444444444333
No 215
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.85 E-value=0.42 Score=37.00 Aligned_cols=56 Identities=30% Similarity=0.359 Sum_probs=46.2
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQ 57 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~ 57 (91)
|+...|...+++++|+.+|..++.++-|++++......+|++.++.....+++..+
T Consensus 119 a~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 119 ALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred hhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 56778999999999999999999999999999999999999966555444444333
No 216
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=91.53 E-value=1.4 Score=32.92 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=53.5
Q ss_pred ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEA--------DPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
-+|.-..+....|..|...|+|+.|+..|+.++.+ .|.-......+..+...++++.++. ..|++++..
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv-~ly~~AL~i 270 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAV-NLYEEALTI 270 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHH
Confidence 35777777888999999999999999999999998 5655566666777777777777763 356666543
No 217
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=91.51 E-value=0.76 Score=30.84 Aligned_cols=52 Identities=21% Similarity=0.162 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHHH-----------hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 034553 7 CHNVKALYRRAQVYME-----------IADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAE 59 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~-----------lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 59 (91)
|+-+.|-+.+...+.. .+++..|+..|++|+.++|+ ..++..+.++.+.++.
T Consensus 164 pd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr~ 226 (230)
T PHA02537 164 PDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLKA 226 (230)
T ss_pred ChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHhh
Confidence 4556665555555543 35778999999999999986 5677778888777764
No 218
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.33 E-value=1.3 Score=31.18 Aligned_cols=51 Identities=18% Similarity=0.094 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES 60 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 60 (91)
.+-++..+..+...|.+.+|++..++++.++|=+.+....+..+-..++..
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~ 329 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDE 329 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccc
Confidence 345667788899999999999999999999999888888887777777663
No 219
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.00 E-value=0.58 Score=31.85 Aligned_cols=40 Identities=20% Similarity=0.118 Sum_probs=35.7
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE 45 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~ 45 (91)
.|-..++..-.+.++++-++|++|+...++-+.+.|+++.
T Consensus 67 s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 67 SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence 3456789999999999999999999999999999998763
No 220
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=90.98 E-value=1.2 Score=32.13 Aligned_cols=60 Identities=10% Similarity=-0.035 Sum_probs=49.0
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
+...|+++-.++-.|..+++-+.|.+|...|+.+++..|+. .....+..+-..+++...+
T Consensus 321 l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 321 LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEA 380 (400)
T ss_pred HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHH
Confidence 56789999999999999999999999999999999999874 4556666666666655544
No 221
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=90.51 E-value=1.3 Score=26.87 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=31.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 034553 14 YRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQK 51 (91)
Q Consensus 14 ~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~ 51 (91)
...|..++..|++++|..+|-+|+.+.|+-.++...++
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~q 104 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIYQ 104 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 35788899999999999999999999998766655544
No 222
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=90.43 E-value=2.6 Score=28.06 Aligned_cols=54 Identities=17% Similarity=0.077 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIE-ADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~-l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
+.-.+|+|.++..+|++.+|...|+.++. +-..++...-.+...+-.+.+....
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHH
Confidence 34578999999999999999999999987 5556677766666666666665554
No 223
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=90.22 E-value=2 Score=23.85 Aligned_cols=36 Identities=22% Similarity=0.080 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-------CCCCHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEA-------DPQNRE 45 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l-------~p~~~~ 45 (91)
...+..+|.-+-..|++++|+..|+.+.++ .|+++.
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence 456778888899999988888887776654 677654
No 224
>PRK10941 hypothetical protein; Provisional
Probab=89.13 E-value=2.7 Score=28.77 Aligned_cols=59 Identities=10% Similarity=-0.027 Sum_probs=43.5
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553 17 AQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT 76 (91)
Q Consensus 17 g~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~ 76 (91)
=.+++..++++.|+...++.+.++|+++.-+.....+...+.-...+- .-+..+.++.+
T Consensus 188 K~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~-~DL~~fl~~~P 246 (269)
T PRK10941 188 KAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVAL-SDLSYFVEQCP 246 (269)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHhCC
Confidence 456789999999999999999999999977777777777776655542 22344444443
No 225
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=88.86 E-value=2.7 Score=23.31 Aligned_cols=30 Identities=17% Similarity=0.127 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
...+..+|.-.-..|+|++|+..|..+++.
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 456788899999999999988888887663
No 226
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=88.61 E-value=0.99 Score=29.93 Aligned_cols=56 Identities=9% Similarity=-0.126 Sum_probs=43.9
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQL 56 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~ 56 (91)
+|+.+.|++...|...|......|+.=+|+=.|-+++-..-..+.+...|..+-.+
T Consensus 7 ~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 7 KAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999998654446677766666555
No 227
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.33 E-value=2.7 Score=31.49 Aligned_cols=53 Identities=11% Similarity=-0.099 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHH
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEADPQN--REVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~--~~~~~~l~~~~~~~~~~~~~ 63 (91)
-+-.|.|.+.-++|+.++|++.++..++..|.+ ..++..|-.+--.++.+.+.
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~ 314 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADV 314 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHH
Confidence 344566788889999999999999999988863 35666665555555554443
No 228
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.24 E-value=2.5 Score=30.75 Aligned_cols=72 Identities=17% Similarity=0.156 Sum_probs=55.6
Q ss_pred cccccCCCHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIAD--LILAELDIKKAIEADPQNREVKLLQKSLKQLQAES---NKRDAKFYANMFA 73 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~--~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~mf~ 73 (91)
+|+.+|+..-+|+.|.-++.+.+. +..=+..++++|++||.|-.++.-.+-+-...... ...+-+..-++..
T Consensus 101 ~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~ 177 (421)
T KOG0529|consen 101 ALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLIN 177 (421)
T ss_pred HHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHh
Confidence 578899999999999999987764 67888899999999999988888777777666665 4444444444443
No 229
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=87.77 E-value=1.8 Score=29.74 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=36.8
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHCCCCHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADL-ILAELDIKKAIEADPQNREV 46 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~-~~A~~~~~~al~l~p~~~~~ 46 (91)
|+..+|+++.++..++.+...+|+. +.+.+.+......+|+++-+
T Consensus 227 al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 227 ALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 6788999999999999999999999 66667778878899997644
No 230
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=87.63 E-value=3.2 Score=28.11 Aligned_cols=63 Identities=22% Similarity=0.132 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHC--CCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034553 10 VKALYRRAQVYMEI-ADLILAELDIKKAIEAD--PQNR----EVKLLQKSLKQLQAESNKRDAKFYANMFA 73 (91)
Q Consensus 10 ~ka~~rrg~a~~~l-g~~~~A~~~~~~al~l~--p~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~mf~ 73 (91)
.+++.+.|.++... |+++.|++.|++|+++- .+.. .+...+..+...++++.++- ..|.++..
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~-~~~e~~~~ 183 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAI-EIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHH
Confidence 56788889999888 99999999999999972 1221 45566667777777776652 34555443
No 231
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=87.44 E-value=4.7 Score=29.22 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 62 (91)
++.-...-|+......|+++.|..-...+++..|.++++.....++...++...+
T Consensus 151 ~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ 205 (400)
T COG3071 151 DTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQA 205 (400)
T ss_pred chHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHH
Confidence 3555677888999999999999999999999999999888887777777766544
No 232
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=87.21 E-value=9.5 Score=30.53 Aligned_cols=69 Identities=14% Similarity=0.061 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK 77 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~ 77 (91)
+++...+--.-.+|..++.+++|+..|++++..+|+ .+....+..+..+.+.+.+.++. .=+|+..+|+
T Consensus 74 ~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQka-a~~LyK~~pk 142 (932)
T KOG2053|consen 74 GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKA-ALQLYKNFPK 142 (932)
T ss_pred CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCc
Confidence 344555556677899999999999999999999999 88888999999999988887653 3344444443
No 233
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=86.94 E-value=0.7 Score=33.47 Aligned_cols=32 Identities=9% Similarity=0.119 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
+-++-.+|..|.+|+.+++|.+|+..|...|-
T Consensus 161 ~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 161 ACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred chheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999988765
No 234
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=86.84 E-value=2.7 Score=23.35 Aligned_cols=30 Identities=17% Similarity=-0.051 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
...+.++|.-.-..|+|++|+..|..++++
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345778899999999999999999998874
No 235
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=86.67 E-value=3.9 Score=29.25 Aligned_cols=52 Identities=19% Similarity=0.164 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 12 ALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 12 a~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
-|-..++.+....+.+.|+..+.+|++.+|+..-+.-.+..+....+++..+
T Consensus 182 fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~A 233 (389)
T COG2956 182 FYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKA 233 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHH
Confidence 3556778888888999999999999999999887777777777777666554
No 236
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=85.86 E-value=5.9 Score=30.23 Aligned_cols=49 Identities=24% Similarity=0.058 Sum_probs=39.2
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHCCCCHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKK-AIEADPQNREVKLLQ 50 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~-al~l~p~~~~~~~~l 50 (91)
+|..||++..++...|.+....|....+..++.. +....|+|.++..-+
T Consensus 93 ~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 142 (620)
T COG3914 93 PLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHL 142 (620)
T ss_pred hHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhH
Confidence 4677899999999999998888877777766666 888888888777666
No 237
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=85.85 E-value=7.8 Score=29.56 Aligned_cols=62 Identities=3% Similarity=-0.053 Sum_probs=47.5
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRD 64 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~ 64 (91)
-|+.+|.++.+|+.+-.-+... -+++..++|++.+..-|..+.++...-+-+-+.+.+..-|
T Consensus 12 rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VE 73 (656)
T KOG1914|consen 12 RIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVE 73 (656)
T ss_pred HHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHH
Confidence 3678999999999876655444 9999999999999999998887777666655555555443
No 238
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=85.60 E-value=1.8 Score=30.80 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=33.1
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
|+.+|-++.++...+.++...|+++.|-+.+++||=
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf 68 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALF 68 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999864
No 239
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=85.38 E-value=3.5 Score=27.19 Aligned_cols=31 Identities=13% Similarity=0.124 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEAD 40 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~ 40 (91)
...+|..|....++|++++|+..|.+++..-
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 4567778888888888888888888887753
No 240
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=84.74 E-value=4.3 Score=21.56 Aligned_cols=30 Identities=27% Similarity=0.056 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
...+..+|.-.-..|++++|+..|..|++.
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 345678889999999999999999888774
No 241
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=84.72 E-value=3.1 Score=31.70 Aligned_cols=63 Identities=16% Similarity=0.074 Sum_probs=51.5
Q ss_pred cccccCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEI---ADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRD 64 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~l---g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~ 64 (91)
+++.-|.....|-.|+.++++. |+--.|+.|+..|++++|....+.-.|.++-..+....++.
T Consensus 400 a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal 465 (758)
T KOG1310|consen 400 AIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEAL 465 (758)
T ss_pred HhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhh
Confidence 4556678888888999998874 57788999999999999998888888888877777776653
No 242
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.39 E-value=8.3 Score=29.56 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 14 YRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 14 ~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
|.++.++++++..++|+..++ .+++.+..+......+-.++..+.+.- ..|+.+...
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydeal-diY~~L~kn 139 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEAL-DIYQHLAKN 139 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHH-HHHHHHHhc
Confidence 577777777777777777777 455555556666666666666666542 345554433
No 243
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.28 E-value=7.4 Score=26.49 Aligned_cols=54 Identities=19% Similarity=0.013 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEI------ADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 9 ~~ka~~rrg~a~~~l------g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 62 (91)
..++++.+|.-...+ +..++++..|..+.+++|+...+...+......+-....
T Consensus 251 ~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~ 310 (352)
T PF02259_consen 251 KAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDP 310 (352)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhh
Confidence 467888888888888 899999999999999999988877777777666655443
No 244
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.26 E-value=5.2 Score=25.50 Aligned_cols=33 Identities=27% Similarity=0.121 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQ 42 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~ 42 (91)
..++..+|.-|+..|+++.|++.|.++.+-...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~ 68 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTS 68 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC
Confidence 468899999999999999999999998886543
No 245
>COG4531 ZnuA ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=83.79 E-value=3.8 Score=28.53 Aligned_cols=56 Identities=29% Similarity=0.288 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc--hhhhhhhhc
Q 034553 29 AELDIKKAIEADPQNR-EVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDS--SVATKVGYF 88 (91)
Q Consensus 29 A~~~~~~al~l~p~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~--~~~~~~g~f 88 (91)
|...-.+..+++|.|. .+...+......+....++-.+. +..+.++. -+++.||||
T Consensus 164 A~~i~~~L~e~dp~~~a~y~aNlk~f~~~La~~d~~i~~~----L~pvk~Kpf~VFHDAY~YF 222 (318)
T COG4531 164 AAAIAKKLAELDPQNAAKYDANLKDFEAQLAALDKKVGEE----LAPVKGKPFFVFHDAYGYF 222 (318)
T ss_pred HHHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHHHHHH----hcccCCCCeEEEechHHHH
Confidence 5556678889999987 57788888888887776654433 44444433 237788887
No 246
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.52 E-value=6.5 Score=28.49 Aligned_cols=49 Identities=10% Similarity=-0.033 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 15 RRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 15 rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
-.+..++..|-|++|.+.-+++++++|.+.=+...+..+.+.-.+.+++
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg 228 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEG 228 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhH
Confidence 3466788999999999999999999999987777777777766666554
No 247
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=83.28 E-value=2.8 Score=29.27 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 12 ALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 12 a~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
.-+|++.+++.+.+|+.|-..|..|+.+--++ .+-.+-.++..++....++
T Consensus 81 ~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d-~L~~We~rLet~L~~~~kk 131 (368)
T COG5091 81 VNFRYFVHFFNIKDYELAQSYFKKAKNLYVDD-TLPLWEDRLETKLNKKNKK 131 (368)
T ss_pred ehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHhHhhHh
Confidence 35899999999999999999999999984333 3333444555555444443
No 248
>PF15469 Sec5: Exocyst complex component Sec5
Probab=83.01 E-value=8.7 Score=24.34 Aligned_cols=43 Identities=19% Similarity=0.054 Sum_probs=31.7
Q ss_pred HHHhCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHH
Q 034553 20 YMEIADLILAELDIKKAIEADP----QNREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 20 ~~~lg~~~~A~~~~~~al~l~p----~~~~~~~~l~~~~~~~~~~~~ 62 (91)
++..|+|+.++.+|.+|..+-- ....+...+..++..+.+.+.
T Consensus 96 ~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~ 142 (182)
T PF15469_consen 96 CIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFRE 142 (182)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999742 334566666777776666654
No 249
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=83.01 E-value=5.5 Score=25.02 Aligned_cols=38 Identities=11% Similarity=0.169 Sum_probs=31.9
Q ss_pred HHHHHHHHhC-CHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 034553 15 RRAQVYMEIA-DLILAELDIKKAIEADPQNREVKLLQKS 52 (91)
Q Consensus 15 rrg~a~~~lg-~~~~A~~~~~~al~l~p~~~~~~~~l~~ 52 (91)
.+|..+...| +.++|..+|-+|+.+-|+-.++...+++
T Consensus 95 ~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL~iyq~ 133 (148)
T TIGR00985 95 QLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLLSIYQQ 133 (148)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 5688899999 9999999999999999987776655543
No 250
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=82.79 E-value=3.7 Score=27.95 Aligned_cols=78 Identities=12% Similarity=0.060 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhhhcc
Q 034553 12 ALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVGYFA 89 (91)
Q Consensus 12 a~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~g~f~ 89 (91)
+|........+.+..+.|...|.+|++-.+-...+......++.......+.-...|......++.+.+.-..|-.|+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 345555666666779999999999996555566777777777666444333224456666677777666666666665
No 251
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=82.66 E-value=4.1 Score=31.04 Aligned_cols=36 Identities=6% Similarity=-0.057 Sum_probs=21.1
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
++++|+++..|.-...+|...|++++|.+.++...+
T Consensus 521 ~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 521 YGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred hCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 345565555666666666666666666666655443
No 252
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=82.29 E-value=6.2 Score=21.49 Aligned_cols=30 Identities=17% Similarity=-0.021 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
+..+..+|.-.-..|+|++|+..|..|++.
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345778888888999999998888887764
No 253
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=81.99 E-value=4.6 Score=22.61 Aligned_cols=29 Identities=17% Similarity=-0.025 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
..+..+|..+-..|+.++|+..|++++..
T Consensus 9 ~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 9 FEEISKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 34556667777789999999999999885
No 254
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.79 E-value=4.8 Score=28.75 Aligned_cols=66 Identities=5% Similarity=-0.043 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
+...+....|-..++-|+|++|++-|+.|++...-++.+.-.+..+.-..+++..+-+ ..+.+.++
T Consensus 142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk-~iSEIieR 207 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALK-HISEIIER 207 (459)
T ss_pred CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHH-HHHHHHHh
Confidence 4667788888899999999999999999999988888777777777777777666543 33444443
No 255
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.66 E-value=5.8 Score=24.71 Aligned_cols=37 Identities=8% Similarity=-0.009 Sum_probs=31.8
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 034553 15 RRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQK 51 (91)
Q Consensus 15 rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~ 51 (91)
.+|..++..|+++++..++-.|+.+-|....+...++
T Consensus 86 ~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqLL~vlq 122 (143)
T KOG4056|consen 86 QLGEELLAQGNEEEGAEHLANAIVVCGQPAQLLQVLQ 122 (143)
T ss_pred HhHHHHHHccCHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 5799999999999999999999999998776655443
No 256
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.57 E-value=7.1 Score=24.69 Aligned_cols=58 Identities=5% Similarity=-0.130 Sum_probs=46.9
Q ss_pred ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553 5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 62 (91)
+-|+.+..-.--|..++..|+|++|+..|+.+.+-.|..+-.+..+.-|-..+++..-
T Consensus 39 LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~W 96 (153)
T TIGR02561 39 LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEW 96 (153)
T ss_pred hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHH
Confidence 4588888888889999999999999999999888777777777777777776655544
No 257
>PF12854 PPR_1: PPR repeat
Probab=81.36 E-value=4 Score=18.67 Aligned_cols=27 Identities=11% Similarity=-0.064 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKK 35 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~ 35 (91)
+.-.|.-.-.++.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 566788888999999999999998875
No 258
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=81.07 E-value=6.8 Score=21.16 Aligned_cols=28 Identities=36% Similarity=0.103 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 12 ALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 12 a~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
.+..+|...-..|++++|+..|..|++.
T Consensus 10 ~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 10 ELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566778888899999998888887774
No 259
>PF13041 PPR_2: PPR repeat family
Probab=80.90 E-value=5.1 Score=19.60 Aligned_cols=42 Identities=14% Similarity=0.089 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEA--DPQNREVKLLQ 50 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l--~p~~~~~~~~l 50 (91)
++-.|.-.-.++.+.|++++|.+.|++..+. .|+.......+
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li 45 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILI 45 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3456667778899999999999999998884 57655444433
No 260
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=80.26 E-value=11 Score=26.12 Aligned_cols=55 Identities=11% Similarity=-0.005 Sum_probs=46.4
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQ 55 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~ 55 (91)
+||+.+|++.+-+...=.....+.+-+.-..-.++++..+|++..++...-...+
T Consensus 56 rAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q 110 (321)
T PF08424_consen 56 RALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQ 110 (321)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 4788899999999998888899999999999999999999998877666544433
No 261
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=79.88 E-value=10 Score=22.37 Aligned_cols=38 Identities=18% Similarity=0.092 Sum_probs=21.6
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN 43 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~ 43 (91)
.+.....++..|.....++.+..++..+..++..++.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (291)
T COG0457 91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP 128 (291)
T ss_pred ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc
Confidence 34455555555566666666666666666655555544
No 262
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=79.80 E-value=12 Score=23.82 Aligned_cols=35 Identities=17% Similarity=0.071 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQN 43 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~ 43 (91)
++..+.+.+.++..+|+.++|.....++..+-|.+
T Consensus 143 ~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 143 DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 67788889999999999999999999999999943
No 263
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=79.79 E-value=6.7 Score=28.88 Aligned_cols=37 Identities=19% Similarity=0.117 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR 44 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~ 44 (91)
..+.-+|..|.+..-.++|+.|.+.|-.|+...|.+.
T Consensus 245 e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 245 EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 4566788999999999999999999999999999854
No 264
>PLN03077 Protein ECB2; Provisional
Probab=79.53 E-value=7.5 Score=30.34 Aligned_cols=35 Identities=11% Similarity=0.006 Sum_probs=23.0
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAI 37 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al 37 (91)
++++|+++-.|...+.+|...|++++|....+...
T Consensus 684 ~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 684 FELDPNSVGYYILLCNLYADAGKWDEVARVRKTMR 718 (857)
T ss_pred HhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 45666666666666667777777776666665543
No 265
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=79.36 E-value=5.5 Score=30.81 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=33.7
Q ss_pred cccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH
Q 034553 4 DCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR 44 (91)
Q Consensus 4 ~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~ 44 (91)
+--|....-+|-.|.++..+++|...+..|..+++.+|...
T Consensus 277 ~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~ 317 (886)
T KOG4507|consen 277 DDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFE 317 (886)
T ss_pred cCCccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchh
Confidence 33344444588899999999999999999999999999754
No 266
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=78.91 E-value=9.4 Score=21.51 Aligned_cols=44 Identities=9% Similarity=0.037 Sum_probs=30.7
Q ss_pred HhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034553 22 EIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDA 65 (91)
Q Consensus 22 ~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 65 (91)
..++...++..-...++.+|+|+.+...++..-....-....+-
T Consensus 19 ~a~~~~~~l~~Al~~l~~~pdnP~~LA~~Qa~l~eyn~~RNaQS 62 (80)
T PRK15326 19 GVDNLQTQVTEALDKLAAKPSDPALLAAYQSKLSEYNLYRNAQS 62 (80)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777888999999987777766655555554433
No 267
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.52 E-value=7.5 Score=27.25 Aligned_cols=47 Identities=28% Similarity=0.290 Sum_probs=26.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 034553 14 YRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES 60 (91)
Q Consensus 14 ~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 60 (91)
+..+......|++.+|...|..++..+|++.++.-.+.++.-..+..
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~ 184 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDV 184 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCCh
Confidence 44455556666666666666666666666655555555554444433
No 268
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.20 E-value=7.4 Score=25.78 Aligned_cols=22 Identities=18% Similarity=0.086 Sum_probs=11.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHH
Q 034553 14 YRRAQVYMEIADLILAELDIKK 35 (91)
Q Consensus 14 ~rrg~a~~~lg~~~~A~~~~~~ 35 (91)
.|.|.+.+.+|.+++|+..+..
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhc
Confidence 4555555555555555555443
No 269
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=77.76 E-value=15 Score=29.60 Aligned_cols=59 Identities=17% Similarity=0.105 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDA 65 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 65 (91)
|.-+--|..+|.+|..+|+|++-++.|.-|++--|+.+++-.....+-.++.+.....+
T Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (932)
T PRK13184 549 VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHR 607 (932)
T ss_pred CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 45566788999999999999999999999999999999888888777777776655433
No 270
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=77.69 E-value=12 Score=31.72 Aligned_cols=41 Identities=10% Similarity=0.105 Sum_probs=35.4
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HCCCC
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIE-ADPQN 43 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~-l~p~~ 43 (91)
+.-+|+..--|.+-=.-++.+++.+.|.+..++||. ++|..
T Consensus 1451 vrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE 1492 (1710)
T KOG1070|consen 1451 VRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFRE 1492 (1710)
T ss_pred HhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch
Confidence 455799999999998899999999999999999998 66653
No 271
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=77.63 E-value=7.3 Score=25.62 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=30.3
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 034553 18 QVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQL 56 (91)
Q Consensus 18 ~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~ 56 (91)
.+++..|+|++|.+.+++... +|++...+..|..+-..
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHc
Confidence 457899999999999999999 99887666666555443
No 272
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=77.52 E-value=13 Score=26.92 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLK 54 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~ 54 (91)
--.|--||-.+.++|.-++|...|++++.+.++..+....+.++.
T Consensus 365 ~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~~ 409 (415)
T COG4941 365 HLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRLD 409 (415)
T ss_pred cccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 335667888999999999999999999999998776655555443
No 273
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=76.78 E-value=10 Score=20.80 Aligned_cols=29 Identities=21% Similarity=-0.079 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
-.+..+|.-.-..|+|++|+..|..+++.
T Consensus 7 i~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 7 IALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34677888889999999999999988874
No 274
>PF07980 SusD: SusD family; InterPro: IPR012944 This domain occurs in several hypothetical proteins. It also occurs in RagB, Q9ZA59 from SWISSPROT, a protein involved in signalling [] and SusD, Q8A1G2 from SWISSPROT, an outer membrane protein involved in nutrient binding [].; PDB: 3IHV_A 3LEW_A 3JQ1_A 3JQ0_A 3NQP_B 3SNX_A 3L22_A 3OTN_A 3IV0_A 3QNK_C ....
Probab=76.58 E-value=7.8 Score=25.24 Aligned_cols=31 Identities=6% Similarity=-0.039 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
.+++|+.+|.|+..+|+.++|+.+++.+.+-
T Consensus 132 ~aEvyL~~AEA~~~~g~~~~A~~~lN~vR~R 162 (266)
T PF07980_consen 132 LAEVYLIYAEALARLGNTAEALEYLNQVRKR 162 (266)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3688999999999999999999999998864
No 275
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=76.09 E-value=11 Score=28.76 Aligned_cols=55 Identities=13% Similarity=0.060 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
+...|.-...++...|+++.|...++++++++|++......+..+....+...++
T Consensus 493 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 493 TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHH
Confidence 3455667777777888888888888888888888766555555555555555444
No 276
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=76.08 E-value=11 Score=20.99 Aligned_cols=55 Identities=16% Similarity=0.321 Sum_probs=40.3
Q ss_pred HHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553 19 VYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK 77 (91)
Q Consensus 19 a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~ 77 (91)
.+..+..++=|+.++.--|.-.|+|..+.........+.++.. ..|.+.|+.+..
T Consensus 4 LL~~I~~~~Fa~~dl~LyLDTHP~d~~Al~~y~~~~~~~~~l~----~~Ye~~yGPLt~ 58 (78)
T PF12652_consen 4 LLREIQEVSFAVVDLNLYLDTHPDDQEALEYYNEYSKQRKQLK----KEYEKRYGPLTN 58 (78)
T ss_pred HHHHHHHHhhHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH----HHHHHHhCCCcC
Confidence 3455566777888888888889999999999888877776654 346666666543
No 277
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=75.28 E-value=11 Score=20.32 Aligned_cols=29 Identities=24% Similarity=0.042 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
..+...|.-.-..|++++|+..|..|++.
T Consensus 7 ~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 7 KELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34667788888889999999888887774
No 278
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=75.14 E-value=14 Score=27.96 Aligned_cols=55 Identities=16% Similarity=0.127 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 62 (91)
-+...|.+-|+=-..++++..|...+++||..|..|..++-....++.+.+.-.-
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNh 125 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNH 125 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhH
Confidence 3556677888888889999999999999999988887777777666666555443
No 279
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=74.34 E-value=13 Score=20.91 Aligned_cols=47 Identities=15% Similarity=0.028 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQ 55 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~ 55 (91)
-.+....+|.=++...+.++|+...+++|+..++..+-...|.-+..
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~q 51 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQ 51 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 35778889999999999999999999999998887754444444433
No 280
>PF09230 DFF40: DNA fragmentation factor 40 kDa; InterPro: IPR015311 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. DNA fragmentation factor (DFF) is a complex of the DNase DFF40 (CAD) and its chaperone/inhibitor DFF45 (ICAD-L). In its inactive form, DFF is a heterodimer composed of a 45kDa chaperone inhibitor subunit (DFF45 or ICAD), and a 40kDa latent endonuclease subunit (DFF40 or CAD). Upon caspase-3 cleavage of DFF45, DFF40 forms active endonuclease homo-oligomers. It is activated during apoptosis to induce DNA fragmentation. DNA binding by DFF is mediated by the nuclease subunit, which can also form stable DNA complexes after release from DFF [, ]. The nuclease subunit is inhibited in DNA cleavage but not in DNA binding []. DFF45 can also be cleaved and inactivated by caspase-7 but not by caspase-6 and caspase-8. The cleaved DFF45 fragments dissociate from DFF40, allowing DFF40 to oligomerise, forming a large complex that cleaves DNA by introducing double strand breaks. Histone H1 confers DNA binding ability to DFF and stimulates the nuclease activity of DFF40 [].; GO: 0016787 hydrolase activity, 0006309 DNA fragmentation involved in apoptotic nuclear change, 0005634 nucleus, 0005737 cytoplasm; PDB: 1V0D_A.
Probab=74.16 E-value=1.9 Score=28.85 Aligned_cols=48 Identities=21% Similarity=0.365 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cCCchhhhhhhhcccC
Q 034553 43 NREVKLLQKSLKQLQAESNKRDAKFYANMFARV--TKDSSVATKVGYFACD 91 (91)
Q Consensus 43 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~--~~~~~~~~~~g~f~~~ 91 (91)
++.++..+..+-....+..+.. ..++-+|... .+....=++-|||.||
T Consensus 83 ~~~ar~~~~~~l~~~~~~Lk~~-~Yng~YFDR~~a~~~~rLCt~~GwF~Cq 132 (230)
T PF09230_consen 83 NAKAREEYLRVLESFRQKLKSD-KYNGSYFDRSCAKEGVRLCTPEGWFSCQ 132 (230)
T ss_dssp -TTTHHHHHHHHHHHHHHHHHG-GGGGGGG-SS-S-TTT-SS-TT--EE--
T ss_pred CHHHHHHHHHHHHHHHHHHhcC-CccceeeccccccccccccCCCCceeee
Confidence 4445555555555555544432 3567778775 2334557999999997
No 281
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=73.55 E-value=10 Score=27.05 Aligned_cols=38 Identities=21% Similarity=0.112 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVK 47 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~ 47 (91)
+.++|+.|.-..+-|..-+|+..|+.|+++.|+=..+.
T Consensus 19 A~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~~ 56 (366)
T KOG2997|consen 19 AIALYEKAVLKEQDGSLYDAINFYRDALQIVPDIESKY 56 (366)
T ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHHHH
Confidence 45689999999999999999999999999998744433
No 282
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=73.23 E-value=9.2 Score=26.48 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=34.9
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
.+.++|-+.++|.+.=.+++..|+...|+..|+++-.+
T Consensus 179 Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 179 LIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 36789999999999999999999999999999998774
No 283
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=72.99 E-value=16 Score=27.40 Aligned_cols=42 Identities=7% Similarity=-0.121 Sum_probs=20.3
Q ss_pred HHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q 034553 19 VYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN 61 (91)
Q Consensus 19 a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~ 61 (91)
-++..|+|..+.-...=..+++| ++.+...++.+-..-+.+.
T Consensus 471 yLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~ 512 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQ 512 (549)
T ss_pred HHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHH
Confidence 34445555555544444455555 3445555555444444443
No 284
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=72.76 E-value=5.7 Score=26.88 Aligned_cols=59 Identities=15% Similarity=0.209 Sum_probs=38.3
Q ss_pred HH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034553 10 VK-ALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYA 69 (91)
Q Consensus 10 ~k-a~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 69 (91)
++ .+++.+.+++..||+..|...+++....+|.... ..+-..+...+...+..+.+.+.
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~-s~E~~~~~~l~~A~~~~D~e~f~ 254 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS-SREYKFLEDLLEAYEEGDVEAFT 254 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT-SHHHHHHHHHHHHHHTT-CCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-cHHHHHHHHHHHHHHhCCHHHHH
Confidence 44 4567888999999999999999999999996543 22223344445555444443333
No 285
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.72 E-value=28 Score=27.37 Aligned_cols=45 Identities=22% Similarity=0.115 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKS 52 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~ 52 (91)
.+.|..-..+.+|..+...+.|++.+..|-+.+|.+.-....+..
T Consensus 392 ~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 392 RFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 457777788889999999999999999999999998754444433
No 286
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=72.71 E-value=38 Score=25.51 Aligned_cols=50 Identities=14% Similarity=-0.008 Sum_probs=36.7
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHH
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR----EVKLLQKSLKQL 56 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~----~~~~~l~~~~~~ 56 (91)
.+++| ++.+|-..|.+++...+|++|-..+. ++-|++. .+.+.+..|++-
T Consensus 489 ~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~---~LP~n~~~~dskvqKAl~lCqKh 542 (549)
T PF07079_consen 489 TKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQ---KLPPNERMRDSKVQKALALCQKH 542 (549)
T ss_pred HHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHH---hCCCchhhHHHHHHHHHHHHHHh
Confidence 35788 89999999999999999999998876 4566432 344444444443
No 287
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=72.65 E-value=3.4 Score=30.69 Aligned_cols=31 Identities=13% Similarity=0.049 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEAD 40 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~ 40 (91)
..|+-..|.+++-+|+++.|+++|++.+.|.
T Consensus 235 RRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 235 RRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 3577888999999999999999999987763
No 288
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=71.72 E-value=8.3 Score=17.42 Aligned_cols=30 Identities=27% Similarity=0.133 Sum_probs=20.5
Q ss_pred HHHHHHHH--HHHHHhC-----CHHHHHHHHHHHHHH
Q 034553 10 VKALYRRA--QVYMEIA-----DLILAELDIKKAIEA 39 (91)
Q Consensus 10 ~ka~~rrg--~a~~~lg-----~~~~A~~~~~~al~l 39 (91)
+.|.++.| ..+..-. +++.|+..|+++.+.
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 46788888 4444332 478888888887664
No 289
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=71.18 E-value=14 Score=24.65 Aligned_cols=48 Identities=15% Similarity=0.041 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHH
Q 034553 13 LYRRAQVYMEIADLILAELDIKKAIEADPQN------REVKLLQKSLKQLQAES 60 (91)
Q Consensus 13 ~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~------~~~~~~l~~~~~~~~~~ 60 (91)
-+..|.-|+.+|+|+.|+..|+.+...-... ..+...+..|...++..
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV 234 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 4577899999999999999999996653221 24555555555544443
No 290
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=70.51 E-value=19 Score=21.10 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQ 42 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~ 42 (91)
...++..+..+...++++.|+..+.+++...|.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 167 AEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred HHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 333444444444445555555555555554444
No 291
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=69.99 E-value=19 Score=25.61 Aligned_cols=37 Identities=22% Similarity=0.052 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CH
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQ-NR 44 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~-~~ 44 (91)
....|++|..+.+.+.|-+.-|.+.++-.+.+||. |+
T Consensus 101 ~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP 138 (360)
T PF04910_consen 101 QFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP 138 (360)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Confidence 34578999999999999999999999999999999 65
No 292
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=69.16 E-value=14 Score=21.92 Aligned_cols=34 Identities=21% Similarity=0.048 Sum_probs=28.7
Q ss_pred ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
+...|.+..+..|.-+.+-|+|++|...+..|-+
T Consensus 14 ~~aG~ArS~~~eAl~~Ak~g~f~~A~~~i~eA~~ 47 (105)
T COG1447 14 LHAGNARSKAYEALKAAKEGDFEEAEELIQEAND 47 (105)
T ss_pred HHcccHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4568899999999999999999999888776543
No 293
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=69.02 E-value=27 Score=26.54 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034553 13 LYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMF 72 (91)
Q Consensus 13 ~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf 72 (91)
...+|..-+..|+|.=+.+.+++++-.+|+|..++.....+-..++-+.+ -..++++|
T Consensus 455 Vl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE--~A~wRn~y 512 (655)
T COG2015 455 VLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAE--SATWRNFY 512 (655)
T ss_pred HHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhc--cchhhhhH
Confidence 34566666789999999999999999999999999999999888887655 34566654
No 294
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=68.78 E-value=26 Score=26.22 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=26.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034553 16 RAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDA 65 (91)
Q Consensus 16 rg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 65 (91)
...+|+.+++.+.|+.+..+.+.++|...--.-....+-..+..+.++-+
T Consensus 234 lv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 234 LVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred HHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666554333334444555555544433
No 295
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=68.73 E-value=17 Score=27.10 Aligned_cols=38 Identities=13% Similarity=0.044 Sum_probs=32.9
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
+.|-++|.+..-|.|+|.++-.|.+|.+|-..+.-+.=
T Consensus 253 rsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 253 RSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred hhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999887766544
No 296
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.70 E-value=31 Score=23.59 Aligned_cols=42 Identities=14% Similarity=0.005 Sum_probs=34.1
Q ss_pred cccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH
Q 034553 4 DCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE 45 (91)
Q Consensus 4 ~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~ 45 (91)
+-+|.+.-.-.-.-+.++-.|+|+.|..-++-+-.++|++..
T Consensus 29 kakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 29 KAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred hcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 446777766666778888899999999999999999998753
No 297
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.25 E-value=16 Score=27.88 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLK 54 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~ 54 (91)
...-+|+.|..+.++|++-.|.+.|.++...--.|+-+|-.+.++=
T Consensus 334 s~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 334 SMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECC 379 (696)
T ss_pred chhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4567899999999999999999999999998777777766665553
No 298
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=67.98 E-value=18 Score=19.86 Aligned_cols=30 Identities=20% Similarity=0.007 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
+..++.+|.-.-..|+|++|...|..++++
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345778888888999999999999998885
No 299
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=67.29 E-value=35 Score=22.88 Aligned_cols=35 Identities=17% Similarity=0.019 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQN 43 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~ 43 (91)
.+..+.-.|.++..+|.+++|...|+-++..-|.-
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence 44556666777777777777777777777777653
No 300
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=67.20 E-value=11 Score=21.84 Aligned_cols=32 Identities=25% Similarity=0.105 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
.++.+.++..|.-..+.|+|++|...++.|-+
T Consensus 11 aG~Ars~~~eAl~~a~~~~fe~A~~~l~~a~~ 42 (96)
T PF02255_consen 11 AGDARSLAMEALKAAREGDFEEAEELLKEADE 42 (96)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45678888888888999999988888877644
No 301
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=66.84 E-value=30 Score=23.49 Aligned_cols=33 Identities=6% Similarity=0.033 Sum_probs=20.5
Q ss_pred HHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHH
Q 034553 30 ELDIKKAIEADPQNRE-VKLLQKSLKQLQAESNK 62 (91)
Q Consensus 30 ~~~~~~al~l~p~~~~-~~~~l~~~~~~~~~~~~ 62 (91)
....+...+++|.+++ ..........++....+
T Consensus 115 ~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~ 148 (276)
T cd01016 115 KAVAEVLSEKLPEHKDEFQANSEAYVEELDSLDA 148 (276)
T ss_pred HHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHH
Confidence 3344555678999874 56666666666655544
No 302
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=66.08 E-value=16 Score=21.13 Aligned_cols=33 Identities=18% Similarity=0.064 Sum_probs=26.2
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
..++.+.++-.|.-..+.|+|++|...++.|-+
T Consensus 11 ~aG~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~ 43 (97)
T cd00215 11 HAGNARSKALEALKAAKEGDFAEAEELLEEAND 43 (97)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 346778888888888999999988888877644
No 303
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=66.04 E-value=16 Score=21.23 Aligned_cols=33 Identities=12% Similarity=-0.033 Sum_probs=26.0
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
+.++.+.++--|.-..+.|+|++|.+.++.|-+
T Consensus 13 ~aG~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~ 45 (99)
T TIGR00823 13 YAGDARSKALEALKAAKAGDFAKARALVEQAGM 45 (99)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 346778888888888999999888887776544
No 304
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.93 E-value=28 Score=24.54 Aligned_cols=65 Identities=11% Similarity=0.047 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553 12 ALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK 77 (91)
Q Consensus 12 a~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~ 77 (91)
.+...+.++...++|.+|...+.+.+..||.+..+.+....|.--++....+-+. ...|..++++
T Consensus 254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~-~e~~~~~~P~ 318 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQ-LEAMVQQDPR 318 (366)
T ss_pred HHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHH-HHHHhccCCc
Confidence 3445566677778999999999999999999887777777666666665555442 3455555554
No 305
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=64.97 E-value=12 Score=16.51 Aligned_cols=29 Identities=38% Similarity=0.214 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHh----CCHHHHHHHHHHHHHH
Q 034553 11 KALYRRAQVYMEI----ADLILAELDIKKAIEA 39 (91)
Q Consensus 11 ka~~rrg~a~~~l----g~~~~A~~~~~~al~l 39 (91)
.|.+..|..+..- .+.+.|+..++++.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 5777888777542 3888899888888764
No 306
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=64.58 E-value=39 Score=22.41 Aligned_cols=53 Identities=19% Similarity=0.095 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQ----NREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~----~~~~~~~l~~~~~~~~~~~~ 62 (91)
.+.-.+..|..| -..+.+.|+..+.++|++.+. |+++...|..+....+..+.
T Consensus 140 t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 140 TAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred CHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 345555555444 488999999999999998654 46888888888887776654
No 307
>PLN03077 Protein ECB2; Provisional
Probab=64.55 E-value=46 Score=26.13 Aligned_cols=44 Identities=18% Similarity=0.139 Sum_probs=22.7
Q ss_pred HHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553 19 VYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 19 a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 62 (91)
++..-++.+.|....+++++++|++......+..+....+...+
T Consensus 666 ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 666 ACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH
Confidence 34444555555555555566666665555555555444444333
No 308
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=64.52 E-value=36 Score=29.13 Aligned_cols=73 Identities=12% Similarity=0.161 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQ--NREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
+-.+.|...|..++...+-++|...+.+||+.-|. +.++......++-+.+...++ +..|.+.+...+++-+.
T Consensus 1562 q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRG-RtlfEgll~ayPKRtDl 1636 (1710)
T KOG1070|consen 1562 QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERG-RTLFEGLLSAYPKRTDL 1636 (1710)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhh-HHHHHHHHhhCccchhH
Confidence 34677888888888888888888888888888887 446666666665555554443 34455555554444433
No 309
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=64.44 E-value=16 Score=25.18 Aligned_cols=57 Identities=14% Similarity=0.046 Sum_probs=43.6
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034553 18 QVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARV 75 (91)
Q Consensus 18 ~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~ 75 (91)
......++.+.|.+.|.+++++.|+...-+-.+...+.+..+...+- +.|.+++...
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa-~a~~~~L~ld 59 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAA-AAYEEVLELD 59 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHH-HHHHHHHcCC
Confidence 34567789999999999999999998888777777777776665553 3567766654
No 310
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.43 E-value=13 Score=26.68 Aligned_cols=41 Identities=12% Similarity=0.106 Sum_probs=35.8
Q ss_pred cccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH
Q 034553 4 DCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR 44 (91)
Q Consensus 4 ~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~ 44 (91)
+.+|.+.-++.-.|.+|+...+|..|-+.|+..-.+.|...
T Consensus 38 Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~ 78 (459)
T KOG4340|consen 38 ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE 78 (459)
T ss_pred hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH
Confidence 45788888999999999999999999999999988888754
No 311
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=63.63 E-value=35 Score=26.31 Aligned_cols=51 Identities=16% Similarity=0.028 Sum_probs=41.7
Q ss_pred ccccCCCHHHHHHH------HHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 034553 3 LDCDCHNVKALYRR------AQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSL 53 (91)
Q Consensus 3 l~~~p~~~ka~~rr------g~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~ 53 (91)
....|+|......+ |.....+|...++...+.++..+.|.+..+...+-..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 129 EWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 45667888887777 9999999999999999999999999997655554443
No 312
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=62.84 E-value=50 Score=24.34 Aligned_cols=30 Identities=13% Similarity=-0.013 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCC
Q 034553 12 ALYRRAQVYMEIADLILAELDIKKAIEADP 41 (91)
Q Consensus 12 a~~rrg~a~~~lg~~~~A~~~~~~al~l~p 41 (91)
.+|.+|.+++.+++|++|...+.+..+.+.
T Consensus 307 ~~~El~w~~~~~~~w~~A~~~f~~L~~~s~ 336 (468)
T PF10300_consen 307 CYFELAWCHMFQHDWEEAAEYFLRLLKESK 336 (468)
T ss_pred HHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence 355555555555555555555555555443
No 313
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=61.75 E-value=38 Score=23.15 Aligned_cols=54 Identities=24% Similarity=0.211 Sum_probs=28.9
Q ss_pred HHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC----Cchhhhhhhhcc
Q 034553 32 DIKKAIEADPQNRE-VKLLQKSLKQLQAESNKRDAKFYANMFARVTK----DSSVATKVGYFA 89 (91)
Q Consensus 32 ~~~~al~l~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~----~~~~~~~~g~f~ 89 (91)
..+...+++|.+.+ ..........++.+..+. ++..+..++. --..+..++||+
T Consensus 133 Ia~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~----~~~~l~~~~~~~~~~v~~H~af~Y~~ 191 (287)
T cd01137 133 IAKALSEADPANAETYQKNAAAYKAKLKALDEW----AKAKFATIPAEKRKLVTSEGAFSYFA 191 (287)
T ss_pred HHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCCcccCEEEEecccHHHHH
Confidence 34555578999874 555555555555554432 3333443321 112466777764
No 314
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=61.39 E-value=18 Score=24.54 Aligned_cols=41 Identities=17% Similarity=-0.048 Sum_probs=29.4
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCH-----------------HHHHHHHHHHHHHCCC
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADL-----------------ILAELDIKKAIEADPQ 42 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~-----------------~~A~~~~~~al~l~p~ 42 (91)
+++++|++.++|+..|..+..+-+. ..|+..|-+++.+.|.
T Consensus 284 a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 284 ATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 5678999999999999887655332 2366666677776665
No 315
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.35 E-value=44 Score=24.64 Aligned_cols=49 Identities=10% Similarity=-0.070 Sum_probs=33.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553 14 YRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 14 ~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 62 (91)
...|.+++..-.|.+|++.|+++|.-+|+...+...+..+-.++.-+.-
T Consensus 155 LSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydv 203 (557)
T KOG3785|consen 155 LSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDV 203 (557)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhh
Confidence 3455566666678888888888887777766666666666666655443
No 316
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=61.31 E-value=12 Score=23.17 Aligned_cols=30 Identities=3% Similarity=-0.136 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
.-+|--++-++..||+|++++..-.++|.-
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 345666788899999999999888888763
No 317
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=61.25 E-value=12 Score=15.63 Aligned_cols=26 Identities=12% Similarity=-0.024 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 13 LYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 13 ~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
|.-.-.++.+.|++++|...|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 33445678889999999999887654
No 318
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=60.94 E-value=16 Score=16.88 Aligned_cols=19 Identities=11% Similarity=0.079 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHHHCCCC
Q 034553 25 DLILAELDIKKAIEADPQN 43 (91)
Q Consensus 25 ~~~~A~~~~~~al~l~p~~ 43 (91)
+++.|...|++.+...|+-
T Consensus 2 E~dRAR~IyeR~v~~hp~~ 20 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEV 20 (32)
T ss_pred hHHHHHHHHHHHHHhCCCc
Confidence 6788999999999998874
No 319
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=60.26 E-value=24 Score=18.60 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHH
Q 034553 14 YRRAQVYMEIADLILAELDIKKAIEADPQN-REVKLLQKSL 53 (91)
Q Consensus 14 ~rrg~a~~~lg~~~~A~~~~~~al~l~p~~-~~~~~~l~~~ 53 (91)
+..|..++..|+|=+|-+.++.+-...|++ ..+...+-.+
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~ 43 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQL 43 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHH
Confidence 567899999999999999999999766554 2444444333
No 320
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=60.01 E-value=23 Score=20.79 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=25.3
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
..++.+.++--|.-..+-|+|++|...++.|-+
T Consensus 16 ~aG~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~ 48 (104)
T PRK09591 16 HSGNARTEVHEAFAAMREGNFDLAEQKLNQSNE 48 (104)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677888888888888888888887776544
No 321
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=59.75 E-value=28 Score=19.23 Aligned_cols=30 Identities=20% Similarity=-0.078 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
+..+...|...-..|+|++|+..|..|++.
T Consensus 6 ai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 6 AHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 445667788888999999999999999984
No 322
>PRK04841 transcriptional regulator MalT; Provisional
Probab=59.59 E-value=24 Score=27.48 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN 43 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~ 43 (91)
..+.++...|.++..+|++++|...+.+++++....
T Consensus 729 ~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 729 DLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 345688899999999999999999999999987543
No 323
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.40 E-value=41 Score=24.50 Aligned_cols=29 Identities=28% Similarity=0.348 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCC
Q 034553 13 LYRRAQVYMEIADLILAELDIKKAIEADP 41 (91)
Q Consensus 13 ~~rrg~a~~~lg~~~~A~~~~~~al~l~p 41 (91)
++.+|.-|+...+++.|...|+++.....
T Consensus 128 n~YkaLNYm~~nD~~~ArVEfnRan~rQ~ 156 (449)
T COG3014 128 NYYKALNYMLLNDSAKARVEFNRANERQR 156 (449)
T ss_pred HHHHHhhHHHhcchhhhHHHHHHHHHHHH
Confidence 56678888999999999999999988643
No 324
>PF13708 Methyltransf_27: Methyltransferase domain
Probab=59.31 E-value=40 Score=21.83 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhh
Q 034553 27 ILAELDIKKAIE-ADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVG 86 (91)
Q Consensus 27 ~~A~~~~~~al~-l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~g 86 (91)
.++.+.+.+-++ .+|-.-...+.+..+........+--...+-.+|..++..+.++++++
T Consensus 26 ~~~r~~~~~~l~~~~~p~ft~~NI~~t~~~l~~~r~~~~~~~v~~vF~~Ls~~yKTN~~~~ 86 (194)
T PF13708_consen 26 AQARDEWDKQLEEDDPPEFTEENIYSTFEQLHANRGEIFERGVIDVFRSLSWDYKTNSPCK 86 (194)
T ss_pred HHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhchhhccCCCee
Confidence 566777777777 344444555556666666666655555678888988888888887754
No 325
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=58.87 E-value=15 Score=15.65 Aligned_cols=26 Identities=12% Similarity=-0.088 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 13 LYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 13 ~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
|.-.-.++...|++++|...|....+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455678899999999999998765
No 326
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=58.67 E-value=27 Score=23.02 Aligned_cols=46 Identities=22% Similarity=0.130 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 29 AELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 29 A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
|+..|.+|..+.|++-...+.|..+....+..-.+---.++.+...
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~ 46 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVR 46 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcC
Confidence 6789999999999999999999988887666555443344444443
No 327
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=58.23 E-value=27 Score=20.96 Aligned_cols=33 Identities=12% Similarity=0.070 Sum_probs=26.3
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
..++.+.++--|.-..+.|+|++|...++.|-+
T Consensus 27 ~aG~ArS~~~eAl~~Ak~gdfe~A~~~l~eA~e 59 (115)
T PRK10454 27 NSGQARSLAYAALKQAKQGDFAAAKAMMDQSRM 59 (115)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346778888888888999999988888877654
No 328
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=57.40 E-value=64 Score=24.84 Aligned_cols=38 Identities=13% Similarity=0.099 Sum_probs=30.0
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
+|+-.|..+.-...++.+...+|+||.|..++.-+-++
T Consensus 315 ~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~ 352 (831)
T PRK15180 315 ALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI 352 (831)
T ss_pred HHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh
Confidence 35556777777778889999999999999988876664
No 329
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.70 E-value=22 Score=27.91 Aligned_cols=72 Identities=14% Similarity=0.169 Sum_probs=45.3
Q ss_pred HHHhCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHH----H--------HHHHHHHHHHHHhh
Q 034553 20 YMEIADLILAELDIKKAIEADPQNR---------------EVKLLQKSLKQLQ----A--------ESNKRDAKFYANMF 72 (91)
Q Consensus 20 ~~~lg~~~~A~~~~~~al~l~p~~~---------------~~~~~l~~~~~~~----~--------~~~~~~~~~~~~mf 72 (91)
-+...+|+.|-.+..+.+.+||.-. +....|....+++ + ...-++-..|=+||
T Consensus 140 Al~seDyE~AA~~IhRflslD~~~i~~~~~~~~~~ts~i~~~~~~L~~a~e~L~~l~~~~f~eA~r~~D~~ei~RffKmF 219 (773)
T KOG0412|consen 140 ALESEDYEKAATHIHRFLSLDQALIESRFAKQVVPTSEISDPYETLKEAKERLSKLFKERFTEAVRKQDLKEITRFFKMF 219 (773)
T ss_pred HHhhhhHHHHHHHHHHHHhcCHHHHhhhhhhccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHc
Confidence 3567799999999999999875311 1112222222222 1 11223344577888
Q ss_pred hcccCCchhhhhhhhcccC
Q 034553 73 ARVTKDSSVATKVGYFACD 91 (91)
Q Consensus 73 ~~~~~~~~~~~~~g~f~~~ 91 (91)
-.+|.......-|--|+|+
T Consensus 220 PliG~~~eGL~~ys~ylc~ 238 (773)
T KOG0412|consen 220 PLIGEEDEGLQLYSVYLCQ 238 (773)
T ss_pred cccCCchhhHHHHHHHHHH
Confidence 8888888888888888885
No 330
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=56.50 E-value=60 Score=21.97 Aligned_cols=30 Identities=10% Similarity=0.084 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIA-DLILAELDIKKAIEA 39 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg-~~~~A~~~~~~al~l 39 (91)
...+|.-|...+..+ ++++|+..+++++++
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 346888899999999 999999999999998
No 331
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=54.97 E-value=28 Score=25.67 Aligned_cols=38 Identities=16% Similarity=0.063 Sum_probs=32.9
Q ss_pred cccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC
Q 034553 4 DCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADP 41 (91)
Q Consensus 4 ~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p 41 (91)
+.-|+.+--++-.|..+...|+.++|++.|++++....
T Consensus 261 ~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~ 298 (468)
T PF10300_consen 261 KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQS 298 (468)
T ss_pred HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchh
Confidence 45688888899999999999999999999999885433
No 332
>PF06051 DUF928: Domain of Unknown Function (DUF928); InterPro: IPR010328 This is a family of uncharacterised bacterial proteins.
Probab=54.72 E-value=51 Score=21.29 Aligned_cols=44 Identities=16% Similarity=0.111 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 034553 13 LYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQL 56 (91)
Q Consensus 13 ~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~ 56 (91)
-..++..|...|=+-+|+..+-+...-+|+|..+......+-+.
T Consensus 134 ~~e~~~~YAe~GiWyDaL~~La~lr~~~p~d~~l~~~W~~LL~s 177 (189)
T PF06051_consen 134 PLERAALYAENGIWYDALATLAELRRSQPNDPQLAQDWQELLES 177 (189)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHcCCCChHHHHHHHHHHHh
Confidence 35688999999999999999999999999999888777776553
No 333
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=54.66 E-value=79 Score=23.41 Aligned_cols=30 Identities=20% Similarity=0.066 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEAD 40 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~ 40 (91)
-++|+.+.++-.+|++-+|.+.++.+-++.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 468999999999999999999999998863
No 334
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=54.63 E-value=45 Score=24.13 Aligned_cols=35 Identities=17% Similarity=0.072 Sum_probs=27.1
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q 034553 16 RAQVYMEIADLILAELDIKKAIEADPQNREVKLLQ 50 (91)
Q Consensus 16 rg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l 50 (91)
.+.+.+..|+++.|++.+++++++.|..=.....+
T Consensus 311 l~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~ 345 (374)
T PF13281_consen 311 LLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTL 345 (374)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHH
Confidence 34566789999999999999999998765444333
No 335
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=54.26 E-value=51 Score=20.81 Aligned_cols=33 Identities=24% Similarity=0.173 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
..++.-++..|.||-++|+..+|-+.+++|.+-
T Consensus 117 ~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 117 EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp -S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 356778888899999999998888888887763
No 336
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=53.94 E-value=56 Score=25.12 Aligned_cols=55 Identities=18% Similarity=0.025 Sum_probs=42.1
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQ 57 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~ 57 (91)
|-.|..|.-|+-.-+.--+.+.+|-.|++..++.-+++.....+...+..|-..+
T Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (831)
T PRK15180 769 LVFDSENAYALKYAALNAMHLRDYTQALQYWQRLEKVNGPTEPVTRQISTCITAL 823 (831)
T ss_pred eeeccchHHHHHHHHhhHhHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHH
Confidence 4567888888888888889999999999999999888755555555555554433
No 337
>TIGR03549 conserved hypothetical protein TIGR03549. This family consists of remarkably well-conserved proteins from gamma and beta Proteobacteria, heavily skewed towards organisms of marine environments. This family has an OsmC-like N-terminal domain. It shares a central domain, modeled by pfam02624 and TIGR00702, with other families of smaller proteins. The function is unknown. Fifteen of the first sixteen members of this family are from selenouridine-positive genomes, but this correlation may be fortuitous.
Probab=53.89 E-value=66 Score=25.41 Aligned_cols=30 Identities=10% Similarity=0.057 Sum_probs=25.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCHH
Q 034553 16 RAQVYMEIADLILAELDIKKAIEADPQNRE 45 (91)
Q Consensus 16 rg~a~~~lg~~~~A~~~~~~al~l~p~~~~ 45 (91)
+...++.+|+.++|++...-.++.+.+..+
T Consensus 611 k~~~~la~g~~~~al~~~~~~~~~~~~~~~ 640 (718)
T TIGR03549 611 KLLIYLALQRHEDALELVGMFLQFNDNTVE 640 (718)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCcHH
Confidence 556778899999999999999999877544
No 338
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=53.37 E-value=40 Score=25.09 Aligned_cols=41 Identities=17% Similarity=0.079 Sum_probs=38.2
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQ 42 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~ 42 (91)
++++.|+.+-+-.--+.+++.-|+...+-..++.+.+.+|.
T Consensus 255 a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 255 ANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred HhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence 57889999999999999999999999999999999999986
No 339
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=53.13 E-value=56 Score=24.45 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=32.0
Q ss_pred HHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC----chhhhhhhhcc
Q 034553 30 ELDIKKAIEADPQNRE-VKLLQKSLKQLQAESNKRDAKFYANMFARVTKD----SSVATKVGYFA 89 (91)
Q Consensus 30 ~~~~~~al~l~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~----~~~~~~~g~f~ 89 (91)
....+...+++|.+++ ..........++.+..+. +++.+..++.+ -..++.++||+
T Consensus 325 ~~Ia~~LselDP~na~~Y~~Na~ay~~eL~~Ld~~----~~~~la~ip~k~r~vvt~H~af~YLa 385 (479)
T TIGR03772 325 EVIRDKLIEVDPRGAQAYRSNASAYIHRLERLDTY----VRRTIATIPPSRRHLITTHDAYSYLG 385 (479)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHH----HHHHhhhccccCCEEEEECCcHHHHH
Confidence 3345666789999874 555556665555554433 34445443221 22477788874
No 340
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=52.49 E-value=48 Score=19.85 Aligned_cols=30 Identities=10% Similarity=-0.079 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAI 37 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al 37 (91)
..+.-|-.-|..+...|++++|.+.|+.++
T Consensus 97 ~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 97 KLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp TBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 345566677888999999999999999875
No 341
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=52.29 E-value=42 Score=23.25 Aligned_cols=54 Identities=15% Similarity=0.032 Sum_probs=38.8
Q ss_pred cccCCCHHHHHHHHHHHHHhC----------------------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 034553 4 DCDCHNVKALYRRAQVYMEIA----------------------DLILAELDIKKAIEADPQNREVKLLQKSLKQLQ 57 (91)
Q Consensus 4 ~~~p~~~ka~~rrg~a~~~lg----------------------~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~ 57 (91)
+..|++.-++.-+|..+.... -.+.|+.++.+|++++|....+-..+-.+....
T Consensus 71 ~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~f 146 (277)
T PF13226_consen 71 AACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYF 146 (277)
T ss_pred HHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhc
Confidence 346777788877777765432 257899999999999999887666665554443
No 342
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=51.78 E-value=68 Score=22.14 Aligned_cols=53 Identities=15% Similarity=0.285 Sum_probs=30.1
Q ss_pred HHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-CC--chhhhhhhhcc
Q 034553 33 IKKAIEADPQNRE-VKLLQKSLKQLQAESNKRDAKFYANMFARVT-KD--SSVATKVGYFA 89 (91)
Q Consensus 33 ~~~al~l~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~-~~--~~~~~~~g~f~ 89 (91)
-+...+++|.+.+ ..........++..-.+. ++..++..+ ++ =..++.++||+
T Consensus 150 ~~~L~~~dP~~~~~y~~N~~~y~~kL~~l~~~----~~~~~~~~~~~r~~vt~h~af~Y~~ 206 (303)
T COG0803 150 ADALVELDPENKETYEKNAEAYLKKLNKLDEE----AKAKLSKIPAQRDVVTSHGAFGYLA 206 (303)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCCcCcEEEeecchHHHHH
Confidence 4445679999884 556666666665554433 334444444 21 22377777774
No 343
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=50.16 E-value=33 Score=23.19 Aligned_cols=26 Identities=12% Similarity=0.006 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 13 LYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 13 ~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
++..|...+..++|+.|...|+-++.
T Consensus 249 LW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 249 LWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 67789999999999999999997763
No 344
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.06 E-value=58 Score=23.19 Aligned_cols=39 Identities=8% Similarity=-0.014 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHHHH
Q 034553 24 ADLILAELDIKKAIEADPQNR----EVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 24 g~~~~A~~~~~~al~l~p~~~----~~~~~l~~~~~~~~~~~~ 62 (91)
.++++|+..|+++++++|+-. .+...+-++.-++..+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~e 83 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKE 83 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHH
Confidence 489999999999999998753 244444444444444433
No 345
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=49.91 E-value=97 Score=22.47 Aligned_cols=69 Identities=10% Similarity=0.021 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHH---hCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhhcc
Q 034553 8 HNVKALYRRAQVYME---IADLILAELDIKKAIE-ADPQNREVKLLQKSLKQLQAESN--------KRDAKFYANMFARV 75 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~---lg~~~~A~~~~~~al~-l~p~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~mf~~~ 75 (91)
+..-.-+..|.|+-+ .|+.+.|+..+..++. .++.++++.-.++++.+.+.... .+--..|++-|...
T Consensus 177 ~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 177 NQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred cchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 345566778899988 9999999999999555 55678899999999988886642 11123577777665
Q ss_pred c
Q 034553 76 T 76 (91)
Q Consensus 76 ~ 76 (91)
+
T Consensus 257 ~ 257 (374)
T PF13281_consen 257 P 257 (374)
T ss_pred c
Confidence 3
No 346
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=49.68 E-value=52 Score=19.23 Aligned_cols=30 Identities=20% Similarity=0.140 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
...+++.|..+..-|+.+.|-..|-+.+.+
T Consensus 38 a~~l~~~A~~~~~egd~E~AYvl~~R~~~L 67 (115)
T PF08969_consen 38 ANKLLREAEEYRQEGDEEQAYVLYMRYLTL 67 (115)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 345677788888999999999999998876
No 347
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=49.53 E-value=21 Score=22.48 Aligned_cols=45 Identities=22% Similarity=0.353 Sum_probs=27.6
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553 32 DIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT 76 (91)
Q Consensus 32 ~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~ 76 (91)
++-+|+..+|.++++.+-+..-....-..++-.-+.+=.|+..++
T Consensus 35 dvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~va 79 (152)
T KOG0030|consen 35 DVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVA 79 (152)
T ss_pred HHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHH
Confidence 778899999999988877766555432222222333445554443
No 348
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=48.87 E-value=1.2e+02 Score=23.56 Aligned_cols=85 Identities=9% Similarity=-0.024 Sum_probs=56.3
Q ss_pred cccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhccc---
Q 034553 4 DCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKL----LQKSLKQLQAESNKRDAKFYANMFARVT--- 76 (91)
Q Consensus 4 ~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~mf~~~~--- 76 (91)
..-|..+.+|-.-....+...+|+.-...|.++|..-=+ -+++. -+++++..+-.++....+.|.=...+.+
T Consensus 47 ~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di 125 (656)
T KOG1914|consen 47 NVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDI 125 (656)
T ss_pred ccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCc
Confidence 456889999999999999999999999999999874332 33333 3344444444444444444443333332
Q ss_pred CCchhhhhhhhcc
Q 034553 77 KDSSVATKVGYFA 89 (91)
Q Consensus 77 ~~~~~~~~~g~f~ 89 (91)
..+.+=+.|++|+
T Consensus 126 ~s~siW~eYi~FL 138 (656)
T KOG1914|consen 126 KSYSIWDEYINFL 138 (656)
T ss_pred ccchhHHHHHHHH
Confidence 3466788888886
No 349
>PLN00061 photosystem II protein Psb27; Provisional
Probab=48.35 E-value=63 Score=20.39 Aligned_cols=36 Identities=11% Similarity=0.138 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHHH
Q 034553 27 ILAELDIKKAIEADPQNREV-KLLQKSLKQLQAESNK 62 (91)
Q Consensus 27 ~~A~~~~~~al~l~p~~~~~-~~~l~~~~~~~~~~~~ 62 (91)
-+-+..++.+++++|+|..- ...-...+..+.++..
T Consensus 61 r~VV~tLresl~l~p~D~~~~~~aa~~Ake~IndYis 97 (150)
T PLN00061 61 REVVKTLRESLKEDPKDEAKFRRTADAAKESIREYLG 97 (150)
T ss_pred HHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 45667788899998987653 3444555555555543
No 350
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=46.62 E-value=84 Score=23.66 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=41.1
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES 60 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 60 (91)
..+++.+.+.|+..++..|+++.|+..++. |.=.|. ..+..|+..++.++.-.
T Consensus 519 ~~~d~~~ilarae~~l~~gdL~~A~~~~~~-L~g~~~-~~a~dW~~~ar~~le~~ 571 (582)
T PF09731_consen 519 EGDDVESILARAEYYLERGDLDKAARELNQ-LKGWAR-KLAADWLKEARRRLEVE 571 (582)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHh-CchHHH-HHHHHHHHHHHHHHHHH
Confidence 456889999999999999999999999987 332332 46778888887776544
No 351
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=46.16 E-value=44 Score=17.44 Aligned_cols=24 Identities=13% Similarity=0.018 Sum_probs=17.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 15 RRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 15 rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
.--..+..+|++++|.+.+.....
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334567889999999988877654
No 352
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=46.11 E-value=1.3e+02 Score=23.10 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=25.0
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQ 57 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~ 57 (91)
||..|..|.--|.+-+.+-++-.....|.-.+++|+.+=|.-..++-...-++..+
T Consensus 99 ALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 99 ALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444444444444444333333333333333
No 353
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=45.88 E-value=55 Score=18.43 Aligned_cols=35 Identities=9% Similarity=0.161 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 29 AELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 29 A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
.+..++..++.+|+|.+++-.+.......+++.++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~A 41 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEA 41 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 46788999999999999888888877777666554
No 354
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.00 E-value=59 Score=22.69 Aligned_cols=65 Identities=17% Similarity=0.148 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFA 73 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~ 73 (91)
|+-.+++.-.-.+++...+|..|...++....+..-+. ...-+.++..+..+.+++.+.+++|.+
T Consensus 187 ~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~--sed~r~lenLL~ayd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 187 NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLK--SEDSRSLENLLTAYDEGDIEEIKKVLS 251 (308)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccC--hHHHHHHHHHHHHhccCCHHHHHHHHc
Confidence 34456666666777778899999999988777643221 222344566677777766666666643
No 355
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=44.81 E-value=93 Score=20.77 Aligned_cols=43 Identities=19% Similarity=0.055 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHH
Q 034553 12 ALYRRAQVYMEIADLILAELDIKKAIEADPQN-REVKLLQKSLK 54 (91)
Q Consensus 12 a~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~-~~~~~~l~~~~ 54 (91)
-+.-+|......++|++.+..++++...+|+- .+-++.+..+-
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999999998863 34444444443
No 356
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=44.54 E-value=19 Score=26.75 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=22.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 14 YRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 14 ~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
|.-|.||+.+++|.+|+..|-.+|-
T Consensus 276 Y~VGFayLmmrryadai~~F~niLl 300 (525)
T KOG3677|consen 276 YQVGFAYLMMRRYADAIRVFLNILL 300 (525)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHH
Confidence 6689999999999999999987764
No 357
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=44.48 E-value=1e+02 Score=22.26 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=27.5
Q ss_pred cCCCHHHHHHH-HHHHHHhCCHHHHHHHHHHHHH
Q 034553 6 DCHNVKALYRR-AQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 6 ~p~~~ka~~rr-g~a~~~lg~~~~A~~~~~~al~ 38 (91)
.++.+++..|+ |-..+.+++|+-|...|+.+.+
T Consensus 203 ~~~S~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~ 236 (414)
T PF12739_consen 203 SADSPEAQMRRLADLAFMLRDYELAYSTYRLLKK 236 (414)
T ss_pred CCCChHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 45677777776 7888999999999999998776
No 358
>PF09929 DUF2161: Uncharacterized conserved protein (DUF2161); InterPro: IPR018679 This family of various hypothetical prokaryotic proteins has no known function.
Probab=44.13 E-value=7.6 Score=23.49 Aligned_cols=9 Identities=22% Similarity=0.564 Sum_probs=7.4
Q ss_pred hhhhhhccc
Q 034553 82 ATKVGYFAC 90 (91)
Q Consensus 82 ~~~~g~f~~ 90 (91)
.|.||||-.
T Consensus 94 ~N~YGWFeR 102 (118)
T PF09929_consen 94 DNHYGWFER 102 (118)
T ss_pred hCcccceee
Confidence 799999953
No 359
>smart00762 Cog4 COG4 transport protein. This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport.
Probab=43.97 E-value=18 Score=25.37 Aligned_cols=28 Identities=11% Similarity=0.294 Sum_probs=19.2
Q ss_pred HHHHHHHhhhcccCCchhhhhhhhcccC
Q 034553 64 DAKFYANMFARVTKDSSVATKVGYFACD 91 (91)
Q Consensus 64 ~~~~~~~mf~~~~~~~~~~~~~g~f~~~ 91 (91)
.-..|=++|-.+|........|+.|+|+
T Consensus 27 ~i~rffkLFpllg~~eeGL~~Y~~yic~ 54 (324)
T smart00762 27 ELTRFFKLFPLIGMEEEGLELYSKYICD 54 (324)
T ss_pred HHHHHHHhccccCChHhhHHHHHHHHHH
Confidence 3345666677777767777888888774
No 360
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=43.97 E-value=1e+02 Score=21.37 Aligned_cols=56 Identities=23% Similarity=0.260 Sum_probs=30.1
Q ss_pred HHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC--Cchhhhhhhhcc
Q 034553 30 ELDIKKAIEADPQNRE-VKLLQKSLKQLQAESNKRDAKFYANMFARVTK--DSSVATKVGYFA 89 (91)
Q Consensus 30 ~~~~~~al~l~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~--~~~~~~~~g~f~ 89 (91)
....+...+++|.+++ ..........++..-.+. +++.++...+ --..++.++||.
T Consensus 159 ~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~----~~~~l~~~~~~~~i~~H~af~Yf~ 217 (311)
T PRK09545 159 VAIHDKLVELMPQSKAKLDANLKDFEAQLAQTDKQ----IGNQLAPVKGKGYFVFHDAYGYFE 217 (311)
T ss_pred HHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHH----HHHHhhccCCCcEEEECchHHHHH
Confidence 3345566678999874 555555555555444332 3333443322 223477777774
No 361
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=43.77 E-value=70 Score=19.89 Aligned_cols=39 Identities=21% Similarity=0.159 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHH
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLL 49 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~ 49 (91)
+++--.=..++..-+.+.|...|..++++.|++-.+...
T Consensus 77 EaLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla 115 (139)
T PF12583_consen 77 EALRDFQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLA 115 (139)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHH
Confidence 344444455666778899999999999999997654433
No 362
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=43.24 E-value=1e+02 Score=20.83 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=29.8
Q ss_pred HHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC--chhhhhhhhcc
Q 034553 32 DIKKAIEADPQNRE-VKLLQKSLKQLQAESNKRDAKFYANMFARVTKD--SSVATKVGYFA 89 (91)
Q Consensus 32 ~~~~al~l~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~--~~~~~~~g~f~ 89 (91)
..+...+++|.+++ ..........++....+. ++..+....++ -..++.++||+
T Consensus 129 Ia~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~----~~~~~~~~~~~~~v~~H~af~Y~~ 185 (282)
T cd01017 129 IKDALIKLDPDNKEYYEKNAAAYAKKLEALDQE----YRAKLAKAKGKTFVTQHAAFGYLA 185 (282)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHH----HHHHHhccCCCeEEEecccHHHHH
Confidence 34455578999874 555566666655555443 33334433322 23467777774
No 363
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=42.96 E-value=1.1e+02 Score=24.57 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHH---HHHCCCCH
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKA---IEADPQNR 44 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~a---l~l~p~~~ 44 (91)
+.-|-.-...+|+.||+|++|+..--++ +.+++++.
T Consensus 58 r~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~ 96 (929)
T KOG2062|consen 58 RQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSD 96 (929)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccc
Confidence 3355566788999999999999887666 34566554
No 364
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=42.72 E-value=61 Score=23.96 Aligned_cols=53 Identities=15% Similarity=0.061 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHHHHHHH
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEADPQNR------EVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~------~~~~~l~~~~~~~~~~~~~ 63 (91)
.++.-.|.|+..++-|+.+++.|+.|+++.-++. .+-..|..+-..++++.+.
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Ka 181 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKA 181 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHH
Confidence 4566789999999999999999999999865433 2445556666666666543
No 365
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=42.62 E-value=69 Score=23.63 Aligned_cols=54 Identities=19% Similarity=-0.060 Sum_probs=39.8
Q ss_pred cccccCCCHHHHHHH-HHHHHHhCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRR-AQVYMEIAD---LILAELDIKKAIEADPQNREVKLLQKSLKQ 55 (91)
Q Consensus 2 al~~~p~~~ka~~rr-g~a~~~lg~---~~~A~~~~~~al~l~p~~~~~~~~l~~~~~ 55 (91)
+|++||.|..+|-.| -.+-..... ..+=++...+++.-++.|-.++.....+-.
T Consensus 137 ~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 137 ALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 688999999997544 444444444 667777888888889999888877766655
No 366
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=42.59 E-value=1.2e+02 Score=21.42 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
..|+|+.|.+....+++-+|+..++.|..
T Consensus 255 a~A~y~~a~~~~e~~k~GeaIa~L~~A~~ 283 (346)
T cd09240 255 ALAEYHQSLVAKAQKKFGEEIARLQHALE 283 (346)
T ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHHHH
Confidence 34678888888888888888888888776
No 367
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=42.01 E-value=41 Score=24.29 Aligned_cols=42 Identities=10% Similarity=-0.043 Sum_probs=34.0
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHH
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVK 47 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~ 47 (91)
-|++++-|..-+.--...+-|.+-...|..++.++|.|.+++
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlW 144 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLW 144 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceee
Confidence 467777777776666777888888899999999999998654
No 368
>PF08318 COG4: COG4 transport protein; InterPro: IPR013167 This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport [].
Probab=41.85 E-value=21 Score=24.97 Aligned_cols=27 Identities=11% Similarity=0.320 Sum_probs=20.3
Q ss_pred HHHHHHhhhcccCCchhhhhhhhcccC
Q 034553 65 AKFYANMFARVTKDSSVATKVGYFACD 91 (91)
Q Consensus 65 ~~~~~~mf~~~~~~~~~~~~~g~f~~~ 91 (91)
-..|=++|-.+|......+.|+-|+|+
T Consensus 28 v~rffkLFPlig~~eeGL~~Y~~ylc~ 54 (331)
T PF08318_consen 28 VTRFFKLFPLIGQEEEGLDLYSKYLCD 54 (331)
T ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHH
Confidence 345667777777777888888888884
No 369
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=41.65 E-value=1.6e+02 Score=22.46 Aligned_cols=34 Identities=29% Similarity=0.308 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCC
Q 034553 9 NVKALYRRAQVYM-EIADLILAELDIKKAIEADPQ 42 (91)
Q Consensus 9 ~~ka~~rrg~a~~-~lg~~~~A~~~~~~al~l~p~ 42 (91)
.++.+++.|.+++ ...+++.|...+.+++.+..+
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~ 92 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCER 92 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4678899999987 899999999999999998744
No 370
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=40.37 E-value=99 Score=19.84 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=30.4
Q ss_pred HHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc--hhhhhhhhcc
Q 034553 30 ELDIKKAIEADPQNRE-VKLLQKSLKQLQAESNKRDAKFYANMFARVTKDS--SVATKVGYFA 89 (91)
Q Consensus 30 ~~~~~~al~l~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~--~~~~~~g~f~ 89 (91)
....+...+++|.+++ .........+++....+. ++..++...++. ..++.++||.
T Consensus 122 ~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~----~~~~l~~~~~~~~v~~H~af~Y~~ 180 (203)
T cd01145 122 KALADALIELDPSEQEEYKENLRVFLAKLNKLLRE----WERQFEGLKGIQVVAYHPSYQYLA 180 (203)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHH----HHHHhhccCCCeEEEecccHHHHH
Confidence 3345556678999874 555555555555554433 334444444332 1267777774
No 371
>PLN03218 maturation of RBCL 1; Provisional
Probab=40.16 E-value=2.2e+02 Score=23.68 Aligned_cols=28 Identities=7% Similarity=-0.136 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 12 ALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 12 a~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
.|.-.-.++.+.|++++|.+.|+...+.
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 3333444444444444444444444443
No 372
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=39.42 E-value=45 Score=25.05 Aligned_cols=33 Identities=9% Similarity=0.123 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEADPQN 43 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~ 43 (91)
...|-+|.+|.-+.+++.||..+++-|.+..+-
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL 308 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL 308 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447889999999999999999999988875443
No 373
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=39.33 E-value=1.4e+02 Score=21.31 Aligned_cols=28 Identities=11% Similarity=-0.165 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
-|+|+.|......+++-+++..++.|..
T Consensus 253 ~A~y~~a~~~~~~~k~Ge~Ia~L~~A~~ 280 (361)
T cd09239 253 IAHLHMGKQSEEQQKMGERVAYYQLAND 280 (361)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4567777777777778888877777766
No 374
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.86 E-value=44 Score=24.97 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 13 LYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 13 ~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
....|.++-.++++++|+..|+++|.+
T Consensus 25 ~V~~gl~~dE~~~~e~a~~~Ye~gl~~ 51 (560)
T KOG2709|consen 25 SVEQGLCYDEVNDWENALAMYEKGLNL 51 (560)
T ss_pred HHHhhcchhhhcCHHHHHHHHHHHHHH
Confidence 456788888999999999999999985
No 375
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=38.61 E-value=1.2e+02 Score=20.32 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=29.6
Q ss_pred HHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc--hhhhhhhhcc
Q 034553 30 ELDIKKAIEADPQNRE-VKLLQKSLKQLQAESNKRDAKFYANMFARVTKDS--SVATKVGYFA 89 (91)
Q Consensus 30 ~~~~~~al~l~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~--~~~~~~g~f~ 89 (91)
....+...+++|.+++ ..........++..-.+ .++.+++...++. ..++.++||.
T Consensus 109 ~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~----~~~~~~~~~~~~~~v~~H~af~Y~~ 167 (264)
T cd01020 109 NALADALVKADPDNKKYYQANAKKFVASLKPLAA----KIAELSAKYKGAPVAATEPVFDYLL 167 (264)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHH----HHHHHHhhCCCCeEEEeCchHHHHH
Confidence 3345556678999874 55555555555555443 2344444333221 2256677663
No 376
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=38.45 E-value=88 Score=18.70 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=26.6
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCHH
Q 034553 16 RAQVYMEIADLILAELDIKKAIEADPQNRE 45 (91)
Q Consensus 16 rg~a~~~lg~~~~A~~~~~~al~l~p~~~~ 45 (91)
+|..++..|++-.|++..+..+...+++..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~ 31 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDES 31 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCc
Confidence 577888999999999999999999988774
No 377
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.31 E-value=89 Score=18.69 Aligned_cols=39 Identities=8% Similarity=-0.120 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKL 48 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~ 48 (91)
+-.|-.+|..|..+|+-+.|+..|+.--.+=|++.....
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmD 110 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMD 110 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHH
Confidence 345677899999999999999999988888888765443
No 378
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=38.06 E-value=1.7e+02 Score=21.97 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=41.5
Q ss_pred cccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 034553 4 DCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQ 55 (91)
Q Consensus 4 ~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~ 55 (91)
.+.|+|.++.+-++.+-+.-|+|..|...-+.+...+|... +--.+..++.
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIee 373 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES-AYLLLADIEE 373 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHHh
Confidence 56899999999999999999999999999999999999743 4444444443
No 379
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=37.11 E-value=40 Score=14.31 Aligned_cols=27 Identities=11% Similarity=-0.103 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 12 ALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 12 a~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
.|.-.-.++.+.|+++.|...|+...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345566788899999999998887655
No 380
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=37.01 E-value=55 Score=24.85 Aligned_cols=74 Identities=14% Similarity=0.110 Sum_probs=44.0
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC-------------------------HHHHHHHHHHHH
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN-------------------------REVKLLQKSLKQ 55 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~-------------------------~~~~~~l~~~~~ 55 (91)
+||+++|+.+.||.-+|.= ...-..+|...|++|++....+ .-++..+..+-.
T Consensus 193 eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCar 270 (539)
T PF04184_consen 193 EALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCAR 270 (539)
T ss_pred HHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHH
Confidence 4788899998888776642 2223566666666666652110 014555666666
Q ss_pred HHHHHHHHHHHHHHHhhhcccC
Q 034553 56 LQAESNKRDAKFYANMFARVTK 77 (91)
Q Consensus 56 ~~~~~~~~~~~~~~~mf~~~~~ 77 (91)
++++.+++- .+++.|...++.
T Consensus 271 klGr~~EAI-k~~rdLlke~p~ 291 (539)
T PF04184_consen 271 KLGRLREAI-KMFRDLLKEFPN 291 (539)
T ss_pred HhCChHHHH-HHHHHHHhhCCc
Confidence 666666653 366777665543
No 381
>PRK10548 flagellar biosynthesis protein FliT; Provisional
Probab=36.71 E-value=97 Score=18.67 Aligned_cols=24 Identities=17% Similarity=0.319 Sum_probs=19.5
Q ss_pred HHHHHhhhcccCCchhhhhhhhcc
Q 034553 66 KFYANMFARVTKDSSVATKVGYFA 89 (91)
Q Consensus 66 ~~~~~mf~~~~~~~~~~~~~g~f~ 89 (91)
...+.+++..+.....++.||-|.
T Consensus 87 ~eL~~li~~~~rq~~l~~aYg~~~ 110 (121)
T PRK10548 87 DELSSLIGQSTRQKSVNSAYGQLS 110 (121)
T ss_pred HHHHHHHHHhHHHHHHHHHHhcCC
Confidence 457788888888888999999874
No 382
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=36.11 E-value=88 Score=22.11 Aligned_cols=29 Identities=17% Similarity=-0.035 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
-|+|+.|.++...+++-+|+..++.|...
T Consensus 245 ~A~y~~a~~~~~~~k~GeaIa~L~~A~~~ 273 (348)
T cd09242 245 LAAYYHALALEAAGKYGEAIAYLTQAESI 273 (348)
T ss_pred HHHHHHHHHhHHhccHHHHHHHHHHHHHH
Confidence 45677777777777888888888887763
No 383
>PRK04841 transcriptional regulator MalT; Provisional
Probab=35.96 E-value=77 Score=24.77 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
.++...|.+++..|++++|...+++++.+
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 35667788899999999999999999886
No 384
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=35.03 E-value=66 Score=22.62 Aligned_cols=41 Identities=24% Similarity=0.260 Sum_probs=34.7
Q ss_pred hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 23 IADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 23 lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
....-.|+..++.++..+|.|..++-.+-++...++....+
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A 236 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLA 236 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 45677889999999999999999999999998888776554
No 385
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.87 E-value=1.4e+02 Score=19.92 Aligned_cols=51 Identities=20% Similarity=0.197 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHHHHH
Q 034553 12 ALYRRAQVYMEIADLILAELDIKKAIEADPQNR----EVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 12 a~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~----~~~~~l~~~~~~~~~~~~~ 63 (91)
+-.-.+.++...+++++|+..++.++... .|. -+...|.++.-..+...++
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t-~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQT-KDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccc-hhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 35567889999999999999999988753 333 2344455555555555443
No 386
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=34.63 E-value=1e+02 Score=21.42 Aligned_cols=33 Identities=12% Similarity=0.029 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIEAD 40 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~ 40 (91)
...+.++-+|.|..++|...+|...++.+.+-.
T Consensus 284 R~aEv~L~~AEA~~~~~~~~~A~~~in~vr~ra 316 (359)
T cd08977 284 RYAEVLLLRAEALARLGNGADAIEYLNAVRRRS 316 (359)
T ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHHHHHHhc
Confidence 356889999999999999999999999988754
No 387
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=34.48 E-value=47 Score=14.41 Aligned_cols=27 Identities=30% Similarity=0.224 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 034553 29 AELDIKKAIEADPQNREVKLLQKSLKQ 55 (91)
Q Consensus 29 A~~~~~~al~l~p~~~~~~~~l~~~~~ 55 (91)
.+.....++..+|.|..+..-..-+-+
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHH
Confidence 345667788888888887776665543
No 388
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=34.44 E-value=97 Score=22.17 Aligned_cols=28 Identities=7% Similarity=-0.045 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
-|||+.|..+...+++-+|+..++.|..
T Consensus 249 ~A~y~~a~~l~e~~k~GeaIa~L~~A~~ 276 (353)
T cd09243 249 YAYCYHGETLLAKDKCGEAIRSLQESEK 276 (353)
T ss_pred HHHHHHHHHhHhcchHHHHHHHHHHHHH
Confidence 4567777777767777777777776665
No 389
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=34.22 E-value=65 Score=23.76 Aligned_cols=43 Identities=14% Similarity=0.178 Sum_probs=27.7
Q ss_pred ccCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHH
Q 034553 5 CDCHNVKALYRRAQV-YMEIADLILAELDIKKAIEADPQNREVK 47 (91)
Q Consensus 5 ~~p~~~ka~~rrg~a-~~~lg~~~~A~~~~~~al~l~p~~~~~~ 47 (91)
+.|.+.---.|.|.. .++.++|.-|-...++.|++.|....+.
T Consensus 294 LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~ 337 (422)
T PF06957_consen 294 LQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAE 337 (422)
T ss_dssp --HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHH
Confidence 344443334455544 3778999999999999999999876443
No 390
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=34.13 E-value=32 Score=21.41 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=14.2
Q ss_pred HHHHHhCCHHHHHHHHHH
Q 034553 18 QVYMEIADLILAELDIKK 35 (91)
Q Consensus 18 ~a~~~lg~~~~A~~~~~~ 35 (91)
..++.+|+|++|++.++.
T Consensus 111 k~yl~~~~fd~Al~~~~~ 128 (147)
T PF05131_consen 111 KIYLDKGDFDEALQYCKT 128 (147)
T ss_pred HHHHhcCcHHHHHHHccC
Confidence 467888999988877764
No 391
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=33.70 E-value=1.2e+02 Score=23.06 Aligned_cols=36 Identities=22% Similarity=0.160 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HCCCC
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIE-ADPQN 43 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~-l~p~~ 43 (91)
..+..-|.+|.-++.-++|.+|++....|++ ++|+.
T Consensus 517 ~~V~~~f~~Ae~lF~~~~Y~~al~~~~~alE~vePG~ 553 (569)
T PRK04778 517 EEVAEALNEAERLFREYDYKAALEIIATALEKVEPGV 553 (569)
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHhhCCcH
Confidence 3566788899999999999999999989888 78874
No 392
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=33.66 E-value=99 Score=17.85 Aligned_cols=29 Identities=21% Similarity=0.124 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Q 034553 12 ALYRRAQVYMEIADLILAELDIKKAIEAD 40 (91)
Q Consensus 12 a~~rrg~a~~~lg~~~~A~~~~~~al~l~ 40 (91)
.....|..-+.-|+++.|.+.+.++-+..
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~~ 89 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKLS 89 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 45667888899999999999999997763
No 393
>COG3170 FimV Tfp pilus assembly protein FimV [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=33.58 E-value=1.3e+02 Score=23.95 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=25.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC
Q 034553 14 YRRAQVYMEIADLILAELDIKKAIEAD 40 (91)
Q Consensus 14 ~rrg~a~~~lg~~~~A~~~~~~al~l~ 40 (91)
+-++.+|+.+|+.+.|.+.++.+++..
T Consensus 713 ~dla~ayi~~gd~e~A~~~l~~vl~~g 739 (755)
T COG3170 713 LDLARAYIEIGDRDGAREILQEVLAEG 739 (755)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 789999999999999999999999974
No 394
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.49 E-value=2.4e+02 Score=22.15 Aligned_cols=52 Identities=19% Similarity=0.017 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CHH-HHHHHHHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQ-NRE-VKLLQKSLKQLQAES 60 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~-~~~-~~~~l~~~~~~~~~~ 60 (91)
+..++||--+.+.+.|=+.-|.+.++..+.++|. |+- +...+...--+..++
T Consensus 341 FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareY 394 (665)
T KOG2422|consen 341 FYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREY 394 (665)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhH
Confidence 4567888888889999999999999999999998 773 444444433333333
No 395
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.38 E-value=1.9e+02 Score=21.02 Aligned_cols=61 Identities=20% Similarity=0.191 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034553 12 ALYRRAQVYMEIADLILAELDIKKAIE--ADPQNREVKLLQKSLKQLQAESNKRDAKFYANMF 72 (91)
Q Consensus 12 a~~rrg~a~~~lg~~~~A~~~~~~al~--l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf 72 (91)
-+.|.|.+|...++-.+|....+++-- .+..|..+.-.++.|..+.-.++++--+..++.+
T Consensus 146 l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYy 208 (399)
T KOG1497|consen 146 LCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYY 208 (399)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999988643 4567889999999999988887776444444443
No 396
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=32.90 E-value=74 Score=22.89 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHCCCCHH
Q 034553 9 NVKALYRRAQVYMEI---------ADLILAELDIKKAIEADPQNRE 45 (91)
Q Consensus 9 ~~ka~~rrg~a~~~l---------g~~~~A~~~~~~al~l~p~~~~ 45 (91)
..-|+|+.|..+.++ +....++..|+.++..--.++.
T Consensus 299 ~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~~~~ 344 (371)
T PF12309_consen 299 YLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEKHPE 344 (371)
T ss_pred HHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 356899999988766 5678888888888876444443
No 397
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=32.21 E-value=1.8e+02 Score=22.53 Aligned_cols=30 Identities=10% Similarity=-0.181 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCC
Q 034553 12 ALYRRAQVYMEIADLILAELDIKKAIEADP 41 (91)
Q Consensus 12 a~~rrg~a~~~lg~~~~A~~~~~~al~l~p 41 (91)
-++..|.++.-.|+++.|...+..|..+-|
T Consensus 621 ~~~nLa~a~alq~~~dqAk~ll~~aatl~h 650 (696)
T KOG2471|consen 621 LFANLAAALALQGHHDQAKSLLTHAATLLH 650 (696)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhh
Confidence 478999999999999999999999999877
No 398
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=32.19 E-value=94 Score=21.87 Aligned_cols=34 Identities=18% Similarity=0.074 Sum_probs=30.4
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKK 35 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~ 35 (91)
++..+|.|...-+.....|..+|-.+.|...|..
T Consensus 209 ~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 209 ALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4567899999999999999999999999988864
No 399
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=31.94 E-value=1.5e+02 Score=21.65 Aligned_cols=35 Identities=14% Similarity=0.030 Sum_probs=25.1
Q ss_pred ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
+-|+...++|+.|+-.+.-|+|.+|-..+=--..+
T Consensus 124 f~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l 158 (432)
T KOG2758|consen 124 FTPERIETLYKYAKFQYECGNYSGASDYLYFYRAL 158 (432)
T ss_pred CCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHh
Confidence 45677788888888888888888877665544444
No 400
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=31.83 E-value=1.6e+02 Score=21.14 Aligned_cols=40 Identities=23% Similarity=0.073 Sum_probs=34.6
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADP 41 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p 41 (91)
.|-.|.++..+|.-.|.++..+|+....+.+.-+--=|||
T Consensus 98 eLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~Fldp 137 (366)
T KOG1118|consen 98 ELGDDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDP 137 (366)
T ss_pred hcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4566889999999999999999999999988887776776
No 401
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=31.07 E-value=1.3e+02 Score=21.89 Aligned_cols=31 Identities=29% Similarity=0.357 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEAD 40 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~ 40 (91)
.+|+.+.|.-|++.|+-+.|.+.+++..+..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~kt 134 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKT 134 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999877643
No 402
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=30.89 E-value=1e+02 Score=17.13 Aligned_cols=24 Identities=17% Similarity=0.015 Sum_probs=18.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 16 RAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 16 rg~a~~~lg~~~~A~~~~~~al~l 39 (91)
+..-....||+++|...=++|..+
T Consensus 43 kv~~~~~~Gd~~~A~~aS~~Ak~~ 66 (82)
T PF04505_consen 43 KVRSRYAAGDYEGARRASRKAKKW 66 (82)
T ss_pred hhHHHHHCCCHHHHHHHHHHhHHH
Confidence 344567789999999888887765
No 403
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=30.62 E-value=1.9e+02 Score=21.15 Aligned_cols=39 Identities=18% Similarity=0.112 Sum_probs=33.1
Q ss_pred ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-CCCC
Q 034553 5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEA-DPQN 43 (91)
Q Consensus 5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l-~p~~ 43 (91)
.|+++.-|++.+-.+.+-+-+|+.|++++.+.-+. |.++
T Consensus 162 ~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~IDs~~ 201 (432)
T KOG2758|consen 162 PDRNYLSALWGKLASEILTQNWDGALEDLTRLREYIDSKS 201 (432)
T ss_pred cchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcccc
Confidence 46678889999999999999999999999999884 4443
No 404
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=30.52 E-value=1.1e+02 Score=21.56 Aligned_cols=30 Identities=13% Similarity=0.089 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
..|+|+.|......+++-+|+..++.|...
T Consensus 253 A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~ 282 (346)
T cd09247 253 ARSQLYLARRLKEAGHIGVAVGVLREALRN 282 (346)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 456777777777788899999999988873
No 405
>PF12464 Mac: Maltose acetyltransferase ; InterPro: IPR024688 Maltose acetyltransferase uses acetyl-CoA as acetyl donor to acetylate cytoplasmic maltose [], while galactoside acetyltransferase act on galactosides. ; GO: 0016407 acetyltransferase activity; PDB: 3V4E_A 4EGG_E 4DCL_A 3FTT_A 1KRR_B 1KRU_A 1KRV_C 1KQA_A 3NZ2_J 3ECT_A ....
Probab=30.20 E-value=79 Score=15.65 Aligned_cols=37 Identities=19% Similarity=0.360 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhccc
Q 034553 40 DPQNREVKLLQKSLKQLQAESNK-------RDAKFYANMFARVT 76 (91)
Q Consensus 40 ~p~~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~mf~~~~ 76 (91)
+|.++++.....++...+.++.. ...+.++.+|+.+|
T Consensus 11 ~~~d~el~~~r~~a~~l~~~~N~~~~~d~~~r~~llk~l~g~~G 54 (55)
T PF12464_consen 11 DASDPELQEIRARAKRLLQRYNQTPPEDPEERQELLKELFGSVG 54 (55)
T ss_dssp ETTSHHHHHHHHHHHHHHHHHHHSHTTTHHHHHHHHHHHSSBES
T ss_pred CCCChHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhcC
Confidence 45677777777777777766544 22245777777765
No 406
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=29.83 E-value=1e+02 Score=16.89 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
.+++|+.-|.-++..|++..|+..+.=+..
T Consensus 34 mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~G 63 (75)
T PF04010_consen 34 MAESYLEDGKYFLEKGDYVNALACFSYAHG 63 (75)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467899999999999999999988876544
No 407
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=29.79 E-value=1.8e+02 Score=19.76 Aligned_cols=53 Identities=21% Similarity=0.229 Sum_probs=26.5
Q ss_pred HHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC--chhhhhhhhcc
Q 034553 33 IKKAIEADPQNR-EVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD--SSVATKVGYFA 89 (91)
Q Consensus 33 ~~~al~l~p~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~--~~~~~~~g~f~ 89 (91)
-+...+++|.+. ...........++....+. ++..++...++ -..++.++||+
T Consensus 138 ~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~----~~~~~~~~~~~~~v~~H~af~Yl~ 193 (286)
T cd01019 138 AEKLSALDPDNAATYAANLEAFNARLAELDAT----IKERLAPVKTKPFFVFHDAYGYFE 193 (286)
T ss_pred HHHHHHHCchhHHHHHHHHHHHHHHHHHHHHH----HHHHhhccCCCeEEEecccHHHHH
Confidence 444567899987 3445555555555444332 22333332222 22356677763
No 408
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=29.12 E-value=95 Score=21.52 Aligned_cols=42 Identities=7% Similarity=-0.042 Sum_probs=30.9
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 034553 18 QVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAE 59 (91)
Q Consensus 18 ~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 59 (91)
.+++.-++++.|....++.+.++|+++.-..-...+...++-
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c 230 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGC 230 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCC
Confidence 356778899999999999999999998544444444444433
No 409
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=29.08 E-value=1.3e+02 Score=22.01 Aligned_cols=30 Identities=13% Similarity=-0.281 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
..|+|+.|......+++-+|+..++.|...
T Consensus 296 A~A~~~~g~d~~e~~k~GeaIa~L~~A~~~ 325 (413)
T cd09245 296 ALACKFLGIDAGENGKVGEAIGWLRAAKKE 325 (413)
T ss_pred HHHHHHHHHhhHhcCCHHHHHHHHHHHHHH
Confidence 467788888888889999999999999883
No 410
>PLN03218 maturation of RBCL 1; Provisional
Probab=29.03 E-value=3.4e+02 Score=22.61 Aligned_cols=25 Identities=4% Similarity=-0.219 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Q 034553 12 ALYRRAQVYMEIADLILAELDIKKA 36 (91)
Q Consensus 12 a~~rrg~a~~~lg~~~~A~~~~~~a 36 (91)
.|.-...+|.+.|++++|+..|+..
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3344444444444444444444443
No 411
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=28.98 E-value=1.3e+02 Score=20.94 Aligned_cols=30 Identities=20% Similarity=0.107 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
+-|+|+.|..+...+++-+|+..++.|...
T Consensus 251 a~a~~~~a~~~~e~~~~G~aia~L~~A~~~ 280 (345)
T cd09034 251 ALAYYYHGLKLDEANKIGEAIARLQAALEL 280 (345)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 346777777777777888888888887763
No 412
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=28.90 E-value=1.8e+02 Score=19.45 Aligned_cols=52 Identities=19% Similarity=0.260 Sum_probs=28.2
Q ss_pred HHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC--chhhhhhhhcc
Q 034553 34 KKAIEADPQNRE-VKLLQKSLKQLQAESNKRDAKFYANMFARVTKD--SSVATKVGYFA 89 (91)
Q Consensus 34 ~~al~l~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~--~~~~~~~g~f~ 89 (91)
+...+++|.+++ ..........++....+. ++..+....++ -..++.++||.
T Consensus 130 ~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~----~~~~~~~~~~~~~v~~H~af~Y~~ 184 (266)
T cd01018 130 EALAELDPQNATYYQANLDALLAELDALDSE----IRTILSKLKQRAFMVYHPAWGYFA 184 (266)
T ss_pred HHHHHhCcccHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCCCCeEEEECchhHHHH
Confidence 444568999874 555555555555554443 23334333332 23466777774
No 413
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=28.83 E-value=1.4e+02 Score=19.63 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=28.2
Q ss_pred HHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc--hhhhhhhhc
Q 034553 32 DIKKAIEADPQNRE-VKLLQKSLKQLQAESNKRDAKFYANMFARVTKDS--SVATKVGYF 88 (91)
Q Consensus 32 ~~~~al~l~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~--~~~~~~g~f 88 (91)
.-+...+++|.+++ ....+.....++....+. ++..+...++.. ..+..++||
T Consensus 108 Ia~~L~~~~P~~~~~y~~N~~~~~~~L~~l~~~----~~~~~~~~~~~~~v~~h~~~~Y~ 163 (256)
T PF01297_consen 108 IADALSELDPANKDYYEKNAEKYLKELDELDAE----IKEKLAKLPGRPVVVYHDAFQYF 163 (256)
T ss_dssp HHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHH----HHHHHTTSSGGEEEEEESTTHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHHHHHHHHH----HHHHhhcccCCeEEEEChHHHHH
Confidence 34455568999874 555566666666555443 344444443221 125555555
No 414
>PRK09343 prefoldin subunit beta; Provisional
Probab=28.26 E-value=1.4e+02 Score=17.82 Aligned_cols=33 Identities=12% Similarity=0.079 Sum_probs=26.2
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
=|++.+.|-.-|.+++.. +.++|+..+..=++.
T Consensus 50 L~~d~~VYk~VG~vlv~q-d~~e~~~~l~~r~E~ 82 (121)
T PRK09343 50 LPDDTPIYKIVGNLLVKV-DKTKVEKELKERKEL 82 (121)
T ss_pred CCCcchhHHHhhHHHhhc-cHHHHHHHHHHHHHH
Confidence 356778888889998887 888888888876663
No 415
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=27.90 E-value=1.6e+02 Score=18.39 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
.....++..++..|++.+|...+..++.
T Consensus 118 ~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 118 PAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 4456788999999999999999998874
No 416
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.69 E-value=2.9e+02 Score=21.30 Aligned_cols=36 Identities=28% Similarity=0.211 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHCCCCH
Q 034553 9 NVKALYRRAQVYMEIAD-LILAELDIKKAIEADPQNR 44 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~-~~~A~~~~~~al~l~p~~~ 44 (91)
.+-|+|.+|..+..++. ..+|...+.+|-+-..++.
T Consensus 489 ~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 489 VPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred ccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 46799999999999999 9999999999998765543
No 417
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=27.68 E-value=1.4e+02 Score=17.84 Aligned_cols=46 Identities=11% Similarity=-0.141 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553 12 ALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 12 a~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 62 (91)
+-.-|...++..|+|++|....+.. | .+++.-++..+.-+++-...
T Consensus 41 v~lIRlsSLmNrG~Yq~Al~l~~~~----~-~pdlepw~ALce~rlGl~s~ 86 (115)
T TIGR02508 41 VQLIRLSSLMNRGDYQSALQLGNKL----C-YPDLEPWLALCEWRLGLGSA 86 (115)
T ss_pred HHHHHHHHHHccchHHHHHHhcCCC----C-CchHHHHHHHHHHhhccHHH
Confidence 3455678899999999998665543 2 45666777777666655443
No 418
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=27.46 E-value=1e+02 Score=22.65 Aligned_cols=33 Identities=21% Similarity=0.131 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQ 42 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~ 42 (91)
+.-+|.+|..++...++.+|...++.|+-.-|.
T Consensus 220 v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 220 VVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred eehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 345789999999999999999999999998887
No 419
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=27.21 E-value=1.3e+02 Score=17.11 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034553 26 LILAELDIKKAIEA--DPQNREVKLLQKSLKQLQAESNKRDAKFYANM 71 (91)
Q Consensus 26 ~~~A~~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~m 71 (91)
+.+=...+..++.- +|++.++.....+....+...-..+...+.++
T Consensus 37 ~~~l~~~l~~~~~~g~~p~s~evq~l~~~~~~~~~~~~~~~~~~~~~l 84 (118)
T PF07739_consen 37 WDELFAELAALMEEGVDPDSPEVQELAERWMELINQFTGGDPELLRGL 84 (118)
T ss_dssp HHHHHHHHHHHHHHT--TT-HHHHHHHHHHHHHHHHSS---HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 33444555566665 89999988888888887775444333344443
No 420
>PF08717 nsp8: nsp8 replicase; InterPro: IPR014829 Viral Nsp8 (non structural protein 8) forms a hexadecameric supercomplex with Nsp7 that adopts a hollow cylinder-like structure []. The dimensions of the central channel and positive electrostatic properties of the cylinder imply that it confers processivity on RNA-dependent RNA polymerase []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 2AHM_F 3UB0_D.
Probab=27.19 E-value=1.9e+02 Score=19.09 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHH
Q 034553 25 DLILAELDIKKAIEADPQNREVKLLQ 50 (91)
Q Consensus 25 ~~~~A~~~~~~al~l~p~~~~~~~~l 50 (91)
.|+.|...|+++++-.....++....
T Consensus 14 ~Ye~A~~~Ye~av~ng~~~q~~Kql~ 39 (199)
T PF08717_consen 14 AYETARQAYEEAVANGSSPQELKQLK 39 (199)
T ss_dssp HHHHHHHHHHHHHHCT--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 48899999999999543333333333
No 421
>PRK11619 lytic murein transglycosylase; Provisional
Probab=27.05 E-value=1.3e+02 Score=23.35 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
+.....|.+|.++..+|+.++|...|+++..
T Consensus 344 ~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 344 EKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4567899999999999999999999999744
No 422
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=27.00 E-value=1.3e+02 Score=20.02 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 034553 29 AELDIKKAIEADPQNREVKLLQKSLKQLQ 57 (91)
Q Consensus 29 A~~~~~~al~l~p~~~~~~~~l~~~~~~~ 57 (91)
.+..++-|+.++|+|..+...+..++...
T Consensus 168 ~~~n~~fa~~~~p~n~~l~~~~~~~~~~~ 196 (251)
T PRK10241 168 TLSNMKFALSILPHDLSINDYYRKVKELR 196 (251)
T ss_pred hhhhHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 44567777888899998888888877654
No 423
>PF10095 DUF2333: Uncharacterized protein conserved in bacteria (DUF2333); InterPro: IPR016936 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.87 E-value=2.3e+02 Score=20.40 Aligned_cols=28 Identities=21% Similarity=0.181 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 12 ALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 12 a~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
-|+-||.++..++-+..+..||..+|+-
T Consensus 246 FyeArG~~wAl~~~L~Ai~~DF~~vL~~ 273 (336)
T PF10095_consen 246 FYEARGQAWALYHILKAIEVDFADVLED 273 (336)
T ss_pred HHHHhHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5788999999999999999999998873
No 424
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=26.71 E-value=1.1e+02 Score=21.17 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=32.8
Q ss_pred HHhCCHHHHHHHHHHHHHHCCCCH--------HHHHHHHHHHHHHHHHHHHHH
Q 034553 21 MEIADLILAELDIKKAIEADPQNR--------EVKLLQKSLKQLQAESNKRDA 65 (91)
Q Consensus 21 ~~lg~~~~A~~~~~~al~l~p~~~--------~~~~~l~~~~~~~~~~~~~~~ 65 (91)
-+|.+..+|.+.+++---.+|+.. .++..+..++..+.+..+.++
T Consensus 128 RRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~ 180 (284)
T KOG3960|consen 128 RRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEK 180 (284)
T ss_pred HHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 356778899999999888999864 355666777777777665544
No 425
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=26.68 E-value=1.6e+02 Score=20.89 Aligned_cols=29 Identities=24% Similarity=0.200 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
.-|+|+.|......+++-+++..++.|+.
T Consensus 237 A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~ 265 (355)
T cd09241 237 AAAHYRMALVALEKSKYGEEVARLRVALA 265 (355)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34677778777777788888888887776
No 426
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.47 E-value=2.3e+02 Score=19.75 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=29.0
Q ss_pred HHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH
Q 034553 10 VKALY-RRAQVYMEIADLILAELDIKKAIEADPQNRE 45 (91)
Q Consensus 10 ~ka~~-rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~ 45 (91)
+|.|| .-|.+++.-.+.-.+...+++-.+++|...+
T Consensus 194 ~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 194 AKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 45554 4578888889999999999999999998653
No 427
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=26.35 E-value=1.7e+02 Score=23.35 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQN 43 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~ 43 (91)
.-+|.--|.++++.+++..|..-|.+++++..++
T Consensus 587 f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkged 620 (1141)
T KOG1811|consen 587 FGAWHAWGLACLKAENLAAAREKFKQAFKLKGED 620 (1141)
T ss_pred ccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCc
Confidence 4477778999999999999999999999987554
No 428
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.23 E-value=2.4e+02 Score=19.90 Aligned_cols=33 Identities=21% Similarity=0.162 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIEAD 40 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~ 40 (91)
.+.-.+.--|..+++-|++++|+.....+..++
T Consensus 106 sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE 138 (299)
T KOG3081|consen 106 SNLIDLLLAAIIYMHDGDFDEALKALHLGENLE 138 (299)
T ss_pred hhHHHHHHhhHHhhcCCChHHHHHHHhccchHH
Confidence 444556666888899999999998888755554
No 429
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.01 E-value=2.7e+02 Score=21.55 Aligned_cols=30 Identities=17% Similarity=0.169 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEAD 40 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~ 40 (91)
-.+|-.|.-.+..+++.+|...+.+.|+..
T Consensus 446 ~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 446 SILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 357888999999999999999999999986
No 430
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=25.93 E-value=2e+02 Score=20.20 Aligned_cols=29 Identities=24% Similarity=0.122 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
.-|+|..|......+++-+|+..++.|..
T Consensus 239 A~A~y~~A~~~~~~~~~G~aia~L~~A~~ 267 (377)
T PF03097_consen 239 ALAHYHQALAAEEAKKYGEAIARLRRAEE 267 (377)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 34677778888777777777777766655
No 431
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=25.40 E-value=1.8e+02 Score=22.07 Aligned_cols=53 Identities=15% Similarity=-0.123 Sum_probs=42.2
Q ss_pred cCCCHHHHHHHHHHH--------HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q 034553 6 DCHNVKALYRRAQVY--------MEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQA 58 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~--------~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~ 58 (91)
-|.++.+|.|--.++ .-.|+.++=...=..++++-|.|..+..++..+++.+.
T Consensus 342 fPgfVpayIrPLFc~G~GPFRW~aLSgdpeDi~~tD~~~~el~p~n~~l~~Wid~A~e~i~ 402 (561)
T COG2987 342 FPGFVPAYIRPLFCEGIGPFRWVALSGDPEDIYKTDAAVKELFPDNKHLHRWIDMARERIA 402 (561)
T ss_pred CCcchHHhhhhhhhcCcCCeeEEEecCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHhcCc
Confidence 377888888774443 34788999888889999999999999999988877663
No 432
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=25.04 E-value=1.4e+02 Score=22.08 Aligned_cols=32 Identities=16% Similarity=0.096 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
.+++.-|-+.|.+.+..|+++-|...|+++-.
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 34777899999999999999999999988543
No 433
>PHA02096 hypothetical protein
Probab=25.01 E-value=80 Score=17.92 Aligned_cols=43 Identities=21% Similarity=0.153 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhhhc
Q 034553 45 EVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVGYF 88 (91)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~g~f 88 (91)
++...++.+++.+.++.+..+-.-+++|+. +.--.++.+-|++
T Consensus 37 ~a~~~~~~ak~~i~eylkgt~vikkrlfg~-ptiv~inkps~~l 79 (103)
T PHA02096 37 EADVSLKNAKKSIEEYLKGTTVIKKRLFGP-PTIVSVNKPSGHL 79 (103)
T ss_pred HhhhHHHHHHHHHHHHhcccchhhhhhcCC-CeEEEecCchHHH
Confidence 566667777777888877665555677765 3333344444443
No 434
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=24.74 E-value=2.2e+02 Score=18.96 Aligned_cols=39 Identities=15% Similarity=0.049 Sum_probs=25.1
Q ss_pred hCCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHH
Q 034553 23 IADLILAELDIKKA-IEADPQNREVKLLQKSLKQLQAESN 61 (91)
Q Consensus 23 lg~~~~A~~~~~~a-l~l~p~~~~~~~~l~~~~~~~~~~~ 61 (91)
..+|+.|..+++.. .+++|+.......++.++...+..+
T Consensus 111 R~EY~a~~~~mk~~s~eldP~~~~~l~kfr~aQ~qvr~~K 150 (204)
T cd07661 111 RTEYRAALLWMKSVSQELDPDTYKQLEKFRKAQAQVRSAK 150 (204)
T ss_pred hcccHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHH
Confidence 44677777777654 4589987766555666655555443
No 435
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.60 E-value=1.4e+02 Score=21.96 Aligned_cols=32 Identities=16% Similarity=0.090 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH--HHCCCCH
Q 034553 13 LYRRAQVYMEIADLILAELDIKKAI--EADPQNR 44 (91)
Q Consensus 13 ~~rrg~a~~~lg~~~~A~~~~~~al--~l~p~~~ 44 (91)
|..-|..++.-++|+.|++.|.+=+ +++.+|.
T Consensus 250 yWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 250 YWHTALFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred hHHHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 4455566666667777777776532 2444444
No 436
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=24.53 E-value=93 Score=18.75 Aligned_cols=23 Identities=17% Similarity=0.033 Sum_probs=17.8
Q ss_pred hCCHHHHHHHHHHHHHHCCCCHH
Q 034553 23 IADLILAELDIKKAIEADPQNRE 45 (91)
Q Consensus 23 lg~~~~A~~~~~~al~l~p~~~~ 45 (91)
..+|..|...++.+.+.+|.+..
T Consensus 2 ~~nf~kAl~~L~~a~~~~~~~~~ 24 (123)
T TIGR01987 2 FESFEQALMQLSDANWFDLTNDI 24 (123)
T ss_pred HHHHHHHHHHHHHHHhcCccchH
Confidence 45788899999999988776543
No 437
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=24.21 E-value=1.7e+02 Score=19.47 Aligned_cols=35 Identities=23% Similarity=0.169 Sum_probs=29.6
Q ss_pred cCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHC
Q 034553 6 DCHNVKALYRRAQVYME----IADLILAELDIKKAIEAD 40 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~----lg~~~~A~~~~~~al~l~ 40 (91)
+..++.+.+..|..+.. -.++.+|...|+++.+..
T Consensus 105 ~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 105 ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG 143 (292)
T ss_pred hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC
Confidence 45678899999999877 449999999999999974
No 438
>PLN02469 hydroxyacylglutathione hydrolase
Probab=24.08 E-value=1.7e+02 Score=19.79 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=21.5
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 034553 30 ELDIKKAIEADPQNREVKLLQKSLKQLQAE 59 (91)
Q Consensus 30 ~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 59 (91)
+..++=|+.++|+|..+...+..++.....
T Consensus 178 ~~nl~Fa~~vep~n~~~~~~~~~~~~~~~~ 207 (258)
T PLN02469 178 VKNLKFALTVEPDNEKLKQKLEWAEKQRQA 207 (258)
T ss_pred hhHHHHHHhhCCCCHHHHHHHHHHHHHHHC
Confidence 345566677889999888888887765543
No 439
>COG5345 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.62 E-value=2.6e+02 Score=19.96 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEAD 40 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~ 40 (91)
.-||-+|++|..-|-...|..||..++.-.
T Consensus 268 rfwfA~GQlyayyglLraa~~DF~dVlaek 297 (358)
T COG5345 268 RFWFAYGQLYAYYGLLRAAEVDFADVLAEK 297 (358)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHc
Confidence 468889999999999999999999988753
No 440
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=23.45 E-value=3.5e+02 Score=20.84 Aligned_cols=44 Identities=7% Similarity=-0.010 Sum_probs=36.2
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHH
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREV 46 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~ 46 (91)
|+-+|+|+-.||.+-+-+.-.+.+++-.+.|++.+.--|--+.+
T Consensus 35 IkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~a 78 (660)
T COG5107 35 IKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHA 78 (660)
T ss_pred hhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHH
Confidence 56799999999999999999999999999998877655544433
No 441
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=23.36 E-value=1e+02 Score=23.15 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAE 59 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 59 (91)
..|-.+=.+|++.|++..|++.-...+--+|++..+...+.--+..+..
T Consensus 134 ~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~ 182 (471)
T KOG4459|consen 134 LPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGV 182 (471)
T ss_pred hHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCC
Confidence 3566677889999999999999999999999999998888766654433
No 442
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=23.29 E-value=3.2e+02 Score=22.30 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 28 LAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 28 ~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
.|-+.+..|++-..++.+|...+..++..+.+|.+.
T Consensus 507 ~AQ~aL~eAL~~gAsdeEI~~Lm~eLR~Am~~ym~~ 542 (851)
T TIGR02302 507 AAQDALKDALERGASDEEIKQLTDKLRAAMQTYMRQ 542 (851)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555566778999999999998888664
No 443
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=22.88 E-value=81 Score=13.34 Aligned_cols=21 Identities=29% Similarity=0.230 Sum_probs=12.1
Q ss_pred HHHHHHhCCHHHHHHHHHHHHH
Q 034553 17 AQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 17 g~a~~~lg~~~~A~~~~~~al~ 38 (91)
+.++-.+|+ ++|+..+.++++
T Consensus 6 a~aLg~igd-~~ai~~L~~~L~ 26 (27)
T PF03130_consen 6 ARALGQIGD-PRAIPALIEALE 26 (27)
T ss_dssp HHHHGGG-S-HHHHHHHHHHHH
T ss_pred HHHHHHcCC-HHHHHHHHHHhc
Confidence 344455555 667777777664
No 444
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=22.87 E-value=96 Score=16.37 Aligned_cols=39 Identities=10% Similarity=0.100 Sum_probs=27.0
Q ss_pred hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q 034553 23 IADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN 61 (91)
Q Consensus 23 lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~ 61 (91)
+.++..|...+..-+.-.|...++...+..-...+....
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lgis~~~v~~~l 41 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELGISVEEVRELL 41 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHTS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHcccHHHHHHHH
Confidence 456788899999989889999888888766655555443
No 445
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=22.77 E-value=3.5e+02 Score=21.93 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q 034553 27 ILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRD 64 (91)
Q Consensus 27 ~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~ 64 (91)
..|-+.+..||+-.-++.+|...+..++..+.++.+.-
T Consensus 475 r~AQe~L~eAL~~gAs~eEI~rLm~eLR~A~~~ym~~L 512 (820)
T PF13779_consen 475 RAAQEALREALERGASDEEIARLMQELREAMQDYMQAL 512 (820)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556555566788888888888888887653
No 446
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=22.63 E-value=1.2e+02 Score=21.79 Aligned_cols=35 Identities=14% Similarity=-0.020 Sum_probs=26.6
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKA 36 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~a 36 (91)
+|.+||-+...+...-..+..+|+--.|+..|++-
T Consensus 305 ~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 305 ALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 56778877777777778888888877777777653
No 447
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=22.41 E-value=2.4e+02 Score=21.43 Aligned_cols=35 Identities=23% Similarity=0.195 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHh-CCHHHHHHHHHHHHH-HCCCC
Q 034553 9 NVKALYRRAQVYMEI-ADLILAELDIKKAIE-ADPQN 43 (91)
Q Consensus 9 ~~ka~~rrg~a~~~l-g~~~~A~~~~~~al~-l~p~~ 43 (91)
.+..-+.+|.-++.. ++|..|++....|++ ++|+.
T Consensus 514 ~v~~al~~Ae~~F~~~~~Y~~ALe~i~~alE~vePG~ 550 (560)
T PF06160_consen 514 EVDEALTEAEDLFRNEYDYEKALETIATALEKVEPGA 550 (560)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCH
Confidence 345566778888888 999999999999998 68874
No 448
>PF09562 RE_LlaMI: LlaMI restriction endonuclease; InterPro: IPR019063 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the restriction endonuclease LlaMI, which recognises and cleaves the double-stranded sequence CC^NGG.
Probab=22.30 E-value=28 Score=23.50 Aligned_cols=8 Identities=38% Similarity=1.169 Sum_probs=5.9
Q ss_pred hhhhhccc
Q 034553 83 TKVGYFAC 90 (91)
Q Consensus 83 ~~~g~f~~ 90 (91)
|+.|||.|
T Consensus 200 ndkGWFkC 207 (271)
T PF09562_consen 200 NDKGWFKC 207 (271)
T ss_pred ccCceeEe
Confidence 55688888
No 449
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=22.00 E-value=1.9e+02 Score=17.15 Aligned_cols=27 Identities=15% Similarity=0.027 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIK 34 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~ 34 (91)
+...+++..+...+..|+++.|+..+.
T Consensus 68 ~~~~~~~~~~~~~l~~g~~~~a~~ll~ 94 (115)
T PF12793_consen 68 SPEELLEQQAEELLEQGKYEQALQLLD 94 (115)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 346788899999999999999987766
No 450
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=21.81 E-value=3.1e+02 Score=20.90 Aligned_cols=26 Identities=19% Similarity=0.077 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIK 34 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~ 34 (91)
.+..+|-.|..+...|+.+.|+..|.
T Consensus 403 ~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 403 YPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 47789999999999999999999998
No 451
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=21.74 E-value=2.4e+02 Score=18.80 Aligned_cols=27 Identities=37% Similarity=0.308 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 13 LYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 13 ~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
+...+...++.|++++|...++++.++
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~ 58 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEA 58 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 445677788999999999999887764
No 452
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.69 E-value=1.1e+02 Score=24.78 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=28.8
Q ss_pred ccCCCHHHHHHH-HHHHHHhCCHHHHHHHHHHHHH-HCCC
Q 034553 5 CDCHNVKALYRR-AQVYMEIADLILAELDIKKAIE-ADPQ 42 (91)
Q Consensus 5 ~~p~~~ka~~rr-g~a~~~lg~~~~A~~~~~~al~-l~p~ 42 (91)
++|+..+...+. |--++..|++++|...|-+.+. ++|.
T Consensus 362 ~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s 401 (933)
T KOG2114|consen 362 LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS 401 (933)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH
Confidence 455555555554 7778999999999999999988 5664
No 453
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.52 E-value=2.6e+02 Score=18.62 Aligned_cols=33 Identities=18% Similarity=0.090 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQ 42 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~ 42 (91)
+-|.+|.|.+....|+-.+|+.+|..+-.-.|-
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~ 126 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSI 126 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC
Confidence 457888999999999999999999987765543
No 454
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.51 E-value=4.4e+02 Score=21.24 Aligned_cols=33 Identities=9% Similarity=0.134 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH
Q 034553 12 ALYRRAQVYMEIADLILAELDIKKAIEADPQNR 44 (91)
Q Consensus 12 a~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~ 44 (91)
.+++-|.-+++..+|..+++.|...+.--|.|.
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~ 388 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDN 388 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 367788889999999999999999999877653
No 455
>PF12075 KN_motif: KN motif; InterPro: IPR021939 This small motif is found at the N terminus of Kank proteins and has been called the KN (for Kank N-terminal) motif. This protein is found in eukaryotes. Proteins in this family are typically between 413 to 1202 amino acids in length. This protein is found associated with PF00023 from PFAM. This protein has two conserved sequence motifs: TPYG and LDLDF. Kank1 was obtained by positional cloning of a tumor suppressor gene in renal cell carcinoma, while the other members were found by homology search. The family is involved in the regulation of actin polymerisation and cell motility through signaling pathways containing PI3K/Akt and/or unidentified modulators/effectors [].
Probab=21.29 E-value=31 Score=16.71 Aligned_cols=10 Identities=50% Similarity=0.627 Sum_probs=7.4
Q ss_pred chhhhhhhhc
Q 034553 79 SSVATKVGYF 88 (91)
Q Consensus 79 ~~~~~~~g~f 88 (91)
++++++|||-
T Consensus 2 ysv~tPYGyh 11 (39)
T PF12075_consen 2 YSVETPYGYH 11 (39)
T ss_pred ccccCCccee
Confidence 4578899974
No 456
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=21.26 E-value=2.9e+02 Score=19.08 Aligned_cols=48 Identities=15% Similarity=0.038 Sum_probs=38.1
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034553 18 QVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDA 65 (91)
Q Consensus 18 ~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 65 (91)
..++.-+...+|+...+.-++-.|.++..+.-+..+--..+...++..
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~ 56 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALA 56 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHH
Confidence 356778899999999999999999999888777777666666655543
No 457
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=21.11 E-value=2.6e+02 Score=21.04 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=22.3
Q ss_pred HhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 034553 22 EIADLILAELDIKKAIEADPQNREVKLLQKSLKQ 55 (91)
Q Consensus 22 ~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~ 55 (91)
..|+.++|.+.++.-...+..+.++.......+.
T Consensus 214 ~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~ 247 (485)
T KOG0569|consen 214 KKGDEEEARKALKFYRGKEDVEAEIEEMLREIEE 247 (485)
T ss_pred HcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 3789999999888877766555554444444433
No 458
>PF12475 Amdo_NSP: Amdovirus non-structural protein ; InterPro: IPR020960 This domain family is found in viruses, and is approximately 50 amino acids in length. This family contains proteins of each of the three types of Amdovirus non-structural protein [].
Probab=20.91 E-value=37 Score=17.21 Aligned_cols=14 Identities=21% Similarity=0.558 Sum_probs=8.8
Q ss_pred cCCchhhhhhhhcc
Q 034553 76 TKDSSVATKVGYFA 89 (91)
Q Consensus 76 ~~~~~~~~~~g~f~ 89 (91)
..-.++..++|||+
T Consensus 6 ~dPkd~t~sL~w~~ 19 (48)
T PF12475_consen 6 NDPKDVTKSLGWFL 19 (48)
T ss_pred CCccccccchHHHH
Confidence 34445667778875
No 459
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=20.16 E-value=2e+02 Score=18.31 Aligned_cols=32 Identities=19% Similarity=0.087 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
|.....+..+-.-|...|+|+-|+..++.+++
T Consensus 137 ~~rl~tL~nlv~q~~~q~r~evav~~~KqalE 168 (181)
T PF09311_consen 137 PARLRTLHNLVIQYESQGRYEVAVPLCKQALE 168 (181)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34456677778888999999999988888876
No 460
>PF04652 DUF605: Vta1 like; InterPro: IPR006745 This family contains proteins from the Eukaryota; functionally they are uncharacterised.; PDB: 2RKK_B 2RKL_B 3MHV_A.
Probab=20.13 E-value=2.4e+02 Score=19.89 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=8.2
Q ss_pred CCHHHHHHHHHHHHH-HCCCC
Q 034553 24 ADLILAELDIKKAIE-ADPQN 43 (91)
Q Consensus 24 g~~~~A~~~~~~al~-l~p~~ 43 (91)
....+|-++.+=|+. |+-+|
T Consensus 344 ~~i~~aQK~aK~AiSAL~feD 364 (380)
T PF04652_consen 344 EQIAKAQKHAKFAISALNFED 364 (380)
T ss_dssp HHHHHHHHHHHHHHHHHTTT-
T ss_pred ccccccccccccccccccccc
Confidence 334444444444443 44433
No 461
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=20.05 E-value=1.1e+02 Score=21.57 Aligned_cols=64 Identities=17% Similarity=0.220 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhcccCCchhhhhhhhcc
Q 034553 26 LILAELDIKKAIEA-----DPQNREVKLLQKSLKQLQAESNK-RDAKFYANMFARVTKDSSVATKVGYFA 89 (91)
Q Consensus 26 ~~~A~~~~~~al~l-----~p~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~mf~~~~~~~~~~~~~g~f~ 89 (91)
+.+|...-+..|.+ .|+..++...|.-+...+.+-.+ +++..-.++|+.++...+.-.-+||+.
T Consensus 78 v~~aF~~qr~~L~~as~~kKP~~~~~~~lL~Pl~~~i~~i~~~ke~nR~s~~fNHLsavsEgi~aLgWV~ 147 (312)
T PF01213_consen 78 VKKAFQAQRKFLLVASKCKKPDQSELQELLKPLSEAIQKIQEFKEKNRGSKFFNHLSAVSEGIPALGWVA 147 (312)
T ss_dssp HHHHHHHHHHHHHHHHHBE---HHHHHHHCHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHCGGGGGGGGG
T ss_pred HHHHHHHHHHHHHHHHccCCCChhhHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHhhheeeeee
Confidence 44444444444444 47666666666666666655433 223233457777777677777788865
Done!