Query 034553
Match_columns 91
No_of_seqs 183 out of 1303
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 06:07:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034553.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034553hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rkv_A Putative peptidylprolyl 99.6 3.3E-16 1.1E-20 95.4 3.6 72 2-73 89-161 (162)
2 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 2.5E-13 8.4E-18 95.4 7.1 78 1-78 342-419 (457)
3 1p5q_A FKBP52, FK506-binding p 99.4 7.8E-13 2.7E-17 89.6 9.0 76 2-77 222-297 (336)
4 4gco_A Protein STI-1; structur 99.4 1.1E-12 3.6E-17 77.8 7.8 85 2-87 39-123 (126)
5 1ihg_A Cyclophilin 40; ppiase 99.4 1.5E-12 5.1E-17 89.6 7.1 73 1-73 298-370 (370)
6 2fbn_A 70 kDa peptidylprolyl i 99.3 4.1E-12 1.4E-16 79.3 7.0 74 2-75 114-187 (198)
7 3gyz_A Chaperone protein IPGC; 99.3 8.1E-12 2.8E-16 76.6 7.7 85 2-87 28-112 (151)
8 2hr2_A Hypothetical protein; a 99.3 6.2E-13 2.1E-17 83.0 1.1 61 3-63 91-155 (159)
9 4ga2_A E3 SUMO-protein ligase 99.3 1.1E-11 3.7E-16 75.1 6.0 80 2-81 57-136 (150)
10 1hxi_A PEX5, peroxisome target 99.2 1.1E-10 3.9E-15 68.4 9.2 74 2-76 43-116 (121)
11 2if4_A ATFKBP42; FKBP-like, al 99.2 2.2E-12 7.4E-17 87.5 1.8 76 2-77 256-331 (338)
12 4gco_A Protein STI-1; structur 99.2 6.8E-11 2.3E-15 69.9 7.6 84 2-86 5-88 (126)
13 3gyz_A Chaperone protein IPGC; 99.2 5.1E-11 1.8E-15 73.0 6.7 74 2-76 62-135 (151)
14 4ga2_A E3 SUMO-protein ligase 99.2 5.8E-11 2E-15 71.8 5.9 86 2-88 23-108 (150)
15 3upv_A Heat shock protein STI1 99.2 1.3E-10 4.5E-15 67.4 7.2 73 2-75 30-102 (126)
16 2pl2_A Hypothetical conserved 99.2 4.7E-10 1.6E-14 71.2 10.0 85 2-87 31-126 (217)
17 3urz_A Uncharacterized protein 99.1 7.5E-11 2.6E-15 74.5 6.1 52 3-54 81-132 (208)
18 3sz7_A HSC70 cochaperone (SGT) 99.1 3.6E-10 1.2E-14 68.5 7.5 78 2-80 37-114 (164)
19 2vgx_A Chaperone SYCD; alterna 99.1 3.4E-10 1.2E-14 68.4 6.8 72 2-74 47-118 (148)
20 2xcb_A PCRH, regulatory protei 99.1 7.5E-10 2.6E-14 65.9 8.0 71 3-74 45-115 (142)
21 3k9i_A BH0479 protein; putativ 99.1 4.7E-10 1.6E-14 64.8 6.6 79 2-81 16-97 (117)
22 2vgx_A Chaperone SYCD; alterna 99.1 6.2E-10 2.1E-14 67.3 7.4 85 2-87 13-97 (148)
23 2xcb_A PCRH, regulatory protei 99.1 6.9E-10 2.3E-14 66.1 7.3 86 1-87 9-94 (142)
24 2h6f_A Protein farnesyltransfe 99.0 3.3E-10 1.1E-14 78.4 6.3 85 2-87 123-208 (382)
25 1zu2_A Mitochondrial import re 99.0 3.4E-10 1.2E-14 70.5 5.5 60 1-60 71-141 (158)
26 2h6f_A Protein farnesyltransfe 99.0 1.8E-10 6E-15 79.8 4.5 84 2-86 158-241 (382)
27 3ma5_A Tetratricopeptide repea 99.0 1.1E-09 3.7E-14 62.0 6.8 69 5-74 2-70 (100)
28 3upv_A Heat shock protein STI1 99.0 3.3E-10 1.1E-14 65.7 4.8 56 2-57 64-125 (126)
29 2kat_A Uncharacterized protein 99.0 1.5E-09 5.1E-14 62.2 7.3 72 2-74 11-82 (115)
30 4gyw_A UDP-N-acetylglucosamine 99.0 8.2E-10 2.8E-14 81.9 7.6 84 2-86 35-118 (723)
31 4gyw_A UDP-N-acetylglucosamine 99.0 1.3E-09 4.3E-14 80.9 7.6 86 1-87 68-153 (723)
32 2hr2_A Hypothetical protein; a 99.0 1.2E-09 4E-14 68.1 5.8 79 2-81 37-138 (159)
33 2pl2_A Hypothetical conserved 99.0 3.4E-09 1.1E-13 67.2 8.0 85 2-88 110-194 (217)
34 3sz7_A HSC70 cochaperone (SGT) 99.0 1.1E-09 3.7E-14 66.4 5.5 61 2-62 71-133 (164)
35 4gcn_A Protein STI-1; structur 99.0 1.2E-09 4.1E-14 64.3 5.4 72 2-74 34-112 (127)
36 3q49_B STIP1 homology and U bo 99.0 3.1E-09 1E-13 61.9 7.1 74 2-76 35-108 (137)
37 3rkv_A Putative peptidylprolyl 98.9 1.6E-09 5.5E-14 65.4 5.9 73 6-79 59-131 (162)
38 1elw_A TPR1-domain of HOP; HOP 98.9 6.1E-09 2.1E-13 58.3 8.0 82 2-84 30-111 (118)
39 1zu2_A Mitochondrial import re 98.9 4.2E-09 1.4E-13 65.5 7.7 76 2-78 28-124 (158)
40 3vtx_A MAMA; tetratricopeptide 98.9 3.7E-09 1.3E-13 64.5 7.3 74 2-76 99-172 (184)
41 3urz_A Uncharacterized protein 98.9 5.3E-09 1.8E-13 65.9 8.2 78 10-88 54-131 (208)
42 2l6j_A TPR repeat-containing p 98.9 3.8E-09 1.3E-13 59.3 6.4 42 2-43 30-71 (111)
43 3vtx_A MAMA; tetratricopeptide 98.9 1E-08 3.5E-13 62.5 8.7 69 8-77 3-71 (184)
44 1na3_A Designed protein CTPR2; 98.9 5.5E-09 1.9E-13 56.8 6.4 81 6-87 4-85 (91)
45 2lni_A Stress-induced-phosphop 98.9 7.5E-09 2.6E-13 59.3 6.9 83 2-85 42-124 (133)
46 2kc7_A BFR218_protein; tetratr 98.9 9.8E-09 3.4E-13 57.0 6.4 46 2-47 26-72 (99)
47 2vyi_A SGTA protein; chaperone 98.9 1.9E-08 6.6E-13 57.1 7.8 84 2-86 38-121 (131)
48 1a17_A Serine/threonine protei 98.8 1.9E-08 6.6E-13 59.7 7.8 51 3-53 74-124 (166)
49 4i17_A Hypothetical protein; T 98.8 7.9E-09 2.7E-13 65.1 6.2 73 2-75 68-147 (228)
50 1p5q_A FKBP52, FK506-binding p 98.8 1.6E-08 5.5E-13 68.3 7.9 84 2-86 173-271 (336)
51 2kck_A TPR repeat; tetratricop 98.8 9.7E-09 3.3E-13 57.1 5.7 72 2-74 32-106 (112)
52 2xev_A YBGF; tetratricopeptide 98.8 2.8E-08 9.5E-13 57.1 7.8 76 2-78 28-109 (129)
53 2dba_A Smooth muscle cell asso 98.8 3.5E-08 1.2E-12 57.5 8.2 79 2-81 54-135 (148)
54 3mkr_A Coatomer subunit epsilo 98.8 1.7E-08 5.6E-13 67.0 7.1 78 2-79 192-269 (291)
55 1pc2_A Mitochondria fission pr 98.8 1.5E-08 5E-13 62.7 6.2 57 3-59 62-120 (152)
56 2fbn_A 70 kDa peptidylprolyl i 98.8 3.5E-08 1.2E-12 61.2 8.0 84 2-86 64-163 (198)
57 1na0_A Designed protein CTPR3; 98.8 4.7E-08 1.6E-12 55.0 7.8 83 2-85 35-117 (125)
58 1kt0_A FKBP51, 51 kDa FK506-bi 98.8 2E-08 6.8E-13 70.5 7.4 84 2-86 294-392 (457)
59 1wao_1 Serine/threonine protei 98.8 2.8E-08 9.5E-13 70.2 8.2 84 2-86 32-115 (477)
60 3q49_B STIP1 homology and U bo 98.8 8E-08 2.7E-12 55.7 8.9 83 3-86 2-84 (137)
61 1na3_A Designed protein CTPR2; 98.8 6.2E-08 2.1E-12 52.4 7.8 55 2-56 35-89 (91)
62 4i17_A Hypothetical protein; T 98.8 2.6E-08 8.8E-13 62.7 6.9 77 2-79 33-110 (228)
63 2pzi_A Probable serine/threoni 98.8 4.7E-09 1.6E-13 76.9 3.8 58 3-60 460-517 (681)
64 3k9i_A BH0479 protein; putativ 98.8 1.6E-08 5.3E-13 58.2 5.3 48 2-49 53-100 (117)
65 2kck_A TPR repeat; tetratricop 98.7 2.7E-08 9.2E-13 55.2 5.9 81 5-86 1-83 (112)
66 2dba_A Smooth muscle cell asso 98.7 3.3E-08 1.1E-12 57.7 6.4 53 2-54 91-143 (148)
67 1w3b_A UDP-N-acetylglucosamine 98.7 3.9E-08 1.3E-12 66.1 7.5 83 3-86 264-346 (388)
68 2c2l_A CHIP, carboxy terminus 98.7 1.8E-08 6.1E-13 66.4 5.6 72 2-74 30-101 (281)
69 2e2e_A Formate-dependent nitri 98.7 5E-08 1.7E-12 59.3 7.2 76 2-78 36-114 (177)
70 3ieg_A DNAJ homolog subfamily 98.7 2.3E-08 7.7E-13 65.5 5.9 58 3-60 299-356 (359)
71 4gcn_A Protein STI-1; structur 98.7 4.1E-08 1.4E-12 57.7 6.4 67 7-74 5-71 (127)
72 1w3b_A UDP-N-acetylglucosamine 98.7 4.8E-08 1.6E-12 65.6 7.6 86 2-88 229-314 (388)
73 1elw_A TPR1-domain of HOP; HOP 98.7 2.9E-08 9.9E-13 55.5 5.5 54 2-55 64-117 (118)
74 2vsy_A XCC0866; transferase, g 98.7 7.8E-08 2.7E-12 68.3 8.2 75 2-77 49-123 (568)
75 2l6j_A TPR repeat-containing p 98.7 1.6E-07 5.5E-12 52.4 7.9 69 9-78 3-71 (111)
76 2vyi_A SGTA protein; chaperone 98.7 6.4E-08 2.2E-12 54.8 6.2 57 2-58 72-128 (131)
77 3bee_A Putative YFRE protein; 98.7 3.7E-08 1.3E-12 55.9 5.1 71 6-77 2-75 (93)
78 2r5s_A Uncharacterized protein 98.7 3.2E-08 1.1E-12 60.5 5.1 70 2-72 100-171 (176)
79 3as5_A MAMA; tetratricopeptide 98.7 5E-07 1.7E-11 53.8 10.2 76 2-78 34-109 (186)
80 2xev_A YBGF; tetratricopeptide 98.7 7.1E-08 2.4E-12 55.4 6.1 55 2-56 65-122 (129)
81 1a17_A Serine/threonine protei 98.7 2.2E-07 7.4E-12 55.1 8.3 79 2-81 39-117 (166)
82 2r5s_A Uncharacterized protein 98.6 3.3E-08 1.1E-12 60.5 4.8 50 1-51 31-80 (176)
83 4abn_A Tetratricopeptide repea 98.6 8.3E-08 2.8E-12 67.4 7.0 84 2-87 129-221 (474)
84 4eqf_A PEX5-related protein; a 98.6 1.4E-07 4.6E-12 62.8 7.7 83 3-86 204-288 (365)
85 2vsy_A XCC0866; transferase, g 98.6 1.6E-07 5.6E-12 66.7 8.4 86 1-87 14-99 (568)
86 2pzi_A Probable serine/threoni 98.6 9.6E-08 3.3E-12 70.0 7.4 84 4-88 427-510 (681)
87 2lni_A Stress-induced-phosphop 98.6 6.1E-08 2.1E-12 55.4 5.2 55 2-56 76-130 (133)
88 3uq3_A Heat shock protein STI1 98.6 1.4E-07 4.7E-12 59.3 7.2 73 2-75 165-237 (258)
89 1xnf_A Lipoprotein NLPI; TPR, 98.6 1.5E-07 5.1E-12 59.9 7.3 72 2-74 69-140 (275)
90 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.3E-07 4.5E-12 58.5 6.8 62 2-63 63-140 (213)
91 1fch_A Peroxisomal targeting s 98.6 1.7E-07 5.7E-12 62.1 7.6 74 2-76 243-316 (368)
92 2q7f_A YRRB protein; TPR, prot 98.6 3.3E-07 1.1E-11 57.3 8.2 79 2-81 49-127 (243)
93 1elr_A TPR2A-domain of HOP; HO 98.6 1.2E-07 4E-12 53.8 5.5 72 2-74 30-108 (131)
94 3ma5_A Tetratricopeptide repea 98.6 7.5E-08 2.6E-12 54.2 4.5 41 2-42 33-73 (100)
95 4eqf_A PEX5-related protein; a 98.6 1.2E-07 4.2E-12 63.1 6.2 73 2-75 91-163 (365)
96 3bee_A Putative YFRE protein; 98.6 6.2E-07 2.1E-11 50.7 8.3 44 1-44 34-77 (93)
97 4abn_A Tetratricopeptide repea 98.6 9.9E-08 3.4E-12 67.1 5.8 62 2-63 247-311 (474)
98 2fo7_A Synthetic consensus TPR 98.6 4.3E-07 1.5E-11 51.3 7.6 84 2-86 27-110 (136)
99 1ihg_A Cyclophilin 40; ppiase 98.6 1.4E-07 4.7E-12 64.8 6.4 82 4-86 267-348 (370)
100 2e2e_A Formate-dependent nitri 98.6 2.5E-07 8.4E-12 56.1 6.9 75 2-77 70-147 (177)
101 2ond_A Cleavage stimulation fa 98.6 1.3E-07 4.5E-12 62.5 6.1 87 2-89 42-144 (308)
102 2if4_A ATFKBP42; FKBP-like, al 98.6 5.3E-08 1.8E-12 65.8 4.1 75 11-86 231-305 (338)
103 3hym_B Cell division cycle pro 98.6 2.4E-07 8.2E-12 60.1 7.1 74 3-77 118-191 (330)
104 3ieg_A DNAJ homolog subfamily 98.6 2.7E-07 9.1E-12 60.3 7.3 74 2-76 29-102 (359)
105 1elr_A TPR2A-domain of HOP; HO 98.5 1.4E-07 4.8E-12 53.5 5.2 58 2-60 64-128 (131)
106 2kat_A Uncharacterized protein 98.5 2.8E-07 9.7E-12 52.4 6.4 57 2-58 45-103 (115)
107 1na0_A Designed protein CTPR3; 98.5 8.7E-07 3E-11 49.6 8.4 81 5-86 3-84 (125)
108 1hxi_A PEX5, peroxisome target 98.5 7.7E-07 2.6E-11 51.7 8.1 75 11-86 18-92 (121)
109 3uq3_A Heat shock protein STI1 98.5 2.2E-07 7.6E-12 58.3 6.1 83 3-86 132-214 (258)
110 3as5_A MAMA; tetratricopeptide 98.5 5.5E-07 1.9E-11 53.6 7.6 61 3-63 69-129 (186)
111 1fch_A Peroxisomal targeting s 98.5 4.2E-07 1.4E-11 60.1 7.6 85 2-87 207-293 (368)
112 3qky_A Outer membrane assembly 98.5 1.3E-06 4.5E-11 56.0 9.7 75 2-77 41-129 (261)
113 3dra_A Protein farnesyltransfe 98.5 4.5E-07 1.5E-11 61.3 7.7 88 2-89 59-154 (306)
114 1xnf_A Lipoprotein NLPI; TPR, 98.5 2.7E-07 9.4E-12 58.6 6.3 81 6-87 39-119 (275)
115 3fp2_A TPR repeat-containing p 98.5 3.6E-07 1.2E-11 63.2 7.1 64 2-65 51-114 (537)
116 2q7f_A YRRB protein; TPR, prot 98.5 6E-07 2E-11 56.1 7.4 61 3-63 84-144 (243)
117 3qou_A Protein YBBN; thioredox 98.5 2.6E-07 8.8E-12 60.9 5.9 62 2-63 211-274 (287)
118 1nzn_A CGI-135 protein, fissio 98.5 6.1E-07 2.1E-11 53.8 6.9 52 8-59 72-123 (126)
119 2c2l_A CHIP, carboxy terminus 98.5 1.3E-06 4.5E-11 57.4 9.2 80 7-87 1-80 (281)
120 1wao_1 Serine/threonine protei 98.5 3.7E-07 1.3E-11 64.5 6.9 56 2-57 66-121 (477)
121 2ond_A Cleavage stimulation fa 98.5 1E-06 3.5E-11 58.2 8.3 72 2-74 90-163 (308)
122 2vq2_A PILW, putative fimbrial 98.5 9.2E-07 3.2E-11 54.4 7.5 70 3-73 35-105 (225)
123 2vq2_A PILW, putative fimbrial 98.4 5.4E-07 1.9E-11 55.4 6.4 82 5-87 3-84 (225)
124 2ho1_A Type 4 fimbrial biogene 98.4 7.5E-07 2.6E-11 56.2 7.2 71 2-73 63-133 (252)
125 2y4t_A DNAJ homolog subfamily 98.4 6.7E-07 2.3E-11 60.7 7.4 74 2-76 52-125 (450)
126 3hym_B Cell division cycle pro 98.4 5.4E-07 1.9E-11 58.4 6.6 79 2-81 82-161 (330)
127 3cv0_A Peroxisome targeting si 98.4 5.9E-07 2E-11 58.2 6.7 73 2-75 198-270 (327)
128 3fp2_A TPR repeat-containing p 98.4 6.3E-07 2.2E-11 62.0 7.1 84 2-86 302-385 (537)
129 3cv0_A Peroxisome targeting si 98.4 1E-06 3.5E-11 57.0 7.6 85 2-87 164-248 (327)
130 1hh8_A P67PHOX, NCF-2, neutrop 98.4 3E-06 1E-10 52.3 9.4 68 9-77 36-103 (213)
131 2y4t_A DNAJ homolog subfamily 98.4 8.7E-07 3E-11 60.1 7.3 85 2-87 18-102 (450)
132 3qky_A Outer membrane assembly 98.4 2.2E-06 7.6E-11 54.9 8.6 74 3-77 8-84 (261)
133 2fo7_A Synthetic consensus TPR 98.4 1.6E-06 5.3E-11 48.9 6.6 72 2-74 61-132 (136)
134 2gw1_A Mitochondrial precursor 98.4 1.9E-06 6.5E-11 59.1 8.2 73 2-76 32-104 (514)
135 3q7a_A Farnesyltransferase alp 98.4 1.2E-06 4.2E-11 60.4 7.0 87 2-88 80-168 (349)
136 1dce_A Protein (RAB geranylger 98.3 1.8E-06 6.2E-11 62.4 8.0 54 3-56 136-190 (567)
137 3o48_A Mitochondria fission 1 98.3 3.8E-06 1.3E-10 50.8 8.0 54 6-59 73-127 (134)
138 2v5f_A Prolyl 4-hydroxylase su 98.3 5.6E-06 1.9E-10 47.1 8.2 52 7-58 43-94 (104)
139 2xpi_A Anaphase-promoting comp 98.3 1.6E-06 5.5E-11 60.9 7.0 58 5-62 368-425 (597)
140 2kc7_A BFR218_protein; tetratr 98.3 8E-06 2.7E-10 44.9 8.5 67 13-80 3-70 (99)
141 1dce_A Protein (RAB geranylger 98.3 1.5E-06 5.1E-11 62.9 6.8 86 2-87 55-151 (567)
142 3qou_A Protein YBBN; thioredox 98.3 6.2E-07 2.1E-11 59.1 4.4 34 2-35 143-176 (287)
143 2ho1_A Type 4 fimbrial biogene 98.3 3.9E-06 1.3E-10 52.8 7.8 69 5-74 136-204 (252)
144 1y8m_A FIS1; mitochondria, unk 98.3 5.4E-06 1.9E-10 50.7 7.4 53 6-58 72-125 (144)
145 3u4t_A TPR repeat-containing p 98.2 8.6E-07 2.9E-11 56.4 4.0 67 10-77 74-140 (272)
146 2yhc_A BAMD, UPF0169 lipoprote 98.2 5.3E-06 1.8E-10 52.4 7.6 54 2-55 30-89 (225)
147 2xpi_A Anaphase-promoting comp 98.2 6.5E-06 2.2E-10 57.8 8.7 87 2-89 399-485 (597)
148 3dss_A Geranylgeranyl transfer 98.2 1.4E-05 4.7E-10 54.7 9.4 56 2-57 136-192 (331)
149 3dss_A Geranylgeranyl transfer 98.2 6.6E-06 2.3E-10 56.3 7.5 86 2-87 100-187 (331)
150 3u4t_A TPR repeat-containing p 98.2 1.2E-05 3.9E-10 51.1 7.9 82 2-85 29-114 (272)
151 4g1t_A Interferon-induced prot 98.2 2.4E-05 8.2E-10 53.5 9.9 54 2-55 239-292 (472)
152 3dra_A Protein farnesyltransfe 98.1 6.6E-06 2.2E-10 55.6 6.4 85 2-86 136-227 (306)
153 3q7a_A Farnesyltransferase alp 98.1 1E-05 3.4E-10 55.8 7.3 87 2-88 115-210 (349)
154 2gw1_A Mitochondrial precursor 98.1 2.7E-06 9.2E-11 58.3 4.2 59 4-62 332-390 (514)
155 3mkr_A Coatomer subunit epsilo 98.1 5.6E-05 1.9E-09 49.9 9.9 80 7-87 127-208 (291)
156 2yhc_A BAMD, UPF0169 lipoprote 98.1 1.9E-05 6.3E-10 49.9 7.2 72 2-74 122-213 (225)
157 2ooe_A Cleavage stimulation fa 98.0 7.6E-06 2.6E-10 57.6 5.3 72 2-74 312-385 (530)
158 2v5f_A Prolyl 4-hydroxylase su 98.0 7.4E-05 2.5E-09 42.3 8.0 79 9-88 4-89 (104)
159 2ooe_A Cleavage stimulation fa 97.9 0.00012 4E-09 51.5 10.2 87 2-89 347-435 (530)
160 4g1t_A Interferon-induced prot 97.9 3.4E-05 1.2E-09 52.7 6.5 51 2-52 164-217 (472)
161 1qqe_A Vesicular transport pro 97.7 3.9E-05 1.3E-09 50.3 4.6 72 2-74 144-228 (292)
162 1ouv_A Conserved hypothetical 97.7 0.00026 9E-09 45.2 7.9 49 6-56 2-50 (273)
163 3edt_B KLC 2, kinesin light ch 97.6 5E-05 1.7E-09 47.8 3.5 68 6-74 123-198 (283)
164 3u64_A Protein TP_0956; tetrat 97.5 0.00029 9.8E-09 47.7 6.7 85 5-90 147-250 (301)
165 1qqe_A Vesicular transport pro 97.5 0.00011 3.8E-09 48.1 4.4 67 10-77 117-190 (292)
166 4f3v_A ESX-1 secretion system 97.5 0.00029 1E-08 47.2 6.4 67 10-77 171-240 (282)
167 3u64_A Protein TP_0956; tetrat 97.5 0.00013 4.4E-09 49.4 4.6 54 1-54 188-249 (301)
168 4a1s_A PINS, partner of inscut 97.4 8.8E-05 3E-09 49.7 3.3 55 8-62 46-104 (411)
169 3edt_B KLC 2, kinesin light ch 97.4 8.8E-05 3E-09 46.7 2.6 67 6-73 81-155 (283)
170 3ro2_A PINS homolog, G-protein 97.4 0.00019 6.5E-09 45.9 4.0 29 11-39 44-72 (338)
171 4a1s_A PINS, partner of inscut 97.3 0.00067 2.3E-08 45.4 6.2 73 2-75 74-156 (411)
172 3sf4_A G-protein-signaling mod 97.3 0.0002 6.8E-09 47.4 3.4 54 8-61 7-64 (406)
173 3ly7_A Transcriptional activat 97.2 0.0028 9.7E-08 44.0 9.1 73 2-76 269-341 (372)
174 3n71_A Histone lysine methyltr 97.2 0.00097 3.3E-08 47.6 6.6 65 7-72 390-462 (490)
175 3nf1_A KLC 1, kinesin light ch 97.1 0.00091 3.1E-08 42.6 5.3 60 5-64 22-89 (311)
176 3sf4_A G-protein-signaling mod 97.1 0.0046 1.6E-07 40.8 8.7 74 2-76 35-118 (406)
177 1ouv_A Conserved hypothetical 97.1 0.0036 1.2E-07 39.8 7.8 48 7-56 35-86 (273)
178 3nf1_A KLC 1, kinesin light ch 97.0 0.00096 3.3E-08 42.5 4.9 67 6-73 149-223 (311)
179 2ifu_A Gamma-SNAP; membrane fu 97.0 0.00064 2.2E-08 44.7 4.1 34 10-43 155-188 (307)
180 3ulq_A Response regulator aspa 97.0 0.00036 1.2E-08 46.8 2.6 58 7-64 140-204 (383)
181 3ly7_A Transcriptional activat 96.9 0.001 3.6E-08 46.2 4.3 43 1-44 302-344 (372)
182 3rjv_A Putative SEL1 repeat pr 96.9 0.0011 3.9E-08 41.4 4.2 51 6-56 81-137 (212)
183 3ro2_A PINS homolog, G-protein 96.9 0.009 3.1E-07 37.9 8.3 55 9-63 4-62 (338)
184 2qfc_A PLCR protein; TPR, HTH, 96.8 0.0055 1.9E-07 39.8 7.1 55 10-64 155-216 (293)
185 3u3w_A Transcriptional activat 96.7 0.0015 5E-08 42.5 3.9 58 6-63 192-256 (293)
186 3q15_A PSP28, response regulat 96.7 0.0049 1.7E-07 41.3 6.5 65 9-74 221-290 (378)
187 4f3v_A ESX-1 secretion system 96.7 0.0081 2.8E-07 40.2 7.4 44 7-51 204-248 (282)
188 3rjv_A Putative SEL1 repeat pr 96.7 0.0034 1.2E-07 39.2 5.3 54 2-56 115-174 (212)
189 1pc2_A Mitochondria fission pr 96.7 0.0029 9.8E-08 38.9 4.7 73 3-76 25-102 (152)
190 3ulq_A Response regulator aspa 96.6 0.0078 2.7E-07 40.2 6.7 55 10-64 224-284 (383)
191 3ro3_A PINS homolog, G-protein 96.6 0.012 4.2E-07 33.3 6.8 30 10-39 89-118 (164)
192 3gw4_A Uncharacterized protein 96.6 0.0053 1.8E-07 36.9 5.4 60 5-64 61-127 (203)
193 2qfc_A PLCR protein; TPR, HTH, 96.6 0.0051 1.8E-07 39.9 5.5 53 11-63 197-255 (293)
194 3mv2_B Coatomer subunit epsilo 96.5 0.014 4.6E-07 39.6 7.5 66 5-71 95-162 (310)
195 2xm6_A Protein corresponding t 96.5 0.0036 1.2E-07 43.4 4.6 67 7-76 396-469 (490)
196 3ro3_A PINS homolog, G-protein 96.4 0.0083 2.8E-07 34.1 5.3 53 11-63 50-108 (164)
197 3qww_A SET and MYND domain-con 96.4 0.0045 1.5E-07 43.6 4.7 65 7-72 337-409 (433)
198 3gw4_A Uncharacterized protein 96.4 0.0042 1.4E-07 37.3 3.9 59 6-64 21-86 (203)
199 2ifu_A Gamma-SNAP; membrane fu 96.3 0.0056 1.9E-07 40.1 4.5 62 10-73 116-183 (307)
200 3q15_A PSP28, response regulat 96.2 0.008 2.7E-07 40.2 4.8 38 5-42 256-293 (378)
201 1klx_A Cysteine rich protein B 96.2 0.047 1.6E-06 31.8 7.7 48 7-56 54-105 (138)
202 3n71_A Histone lysine methyltr 96.0 0.0096 3.3E-07 42.5 4.7 65 6-71 347-419 (490)
203 3qwp_A SET and MYND domain-con 96.0 0.03 1E-06 39.2 7.2 49 6-54 367-420 (429)
204 3qww_A SET and MYND domain-con 95.8 0.023 7.8E-07 40.0 6.0 47 6-52 378-429 (433)
205 3qwp_A SET and MYND domain-con 95.7 0.016 5.4E-07 40.6 4.7 59 7-65 326-392 (429)
206 3u3w_A Transcriptional activat 95.6 0.013 4.5E-07 37.9 4.0 55 10-64 155-216 (293)
207 4e6h_A MRNA 3'-END-processing 95.6 0.023 7.9E-07 42.1 5.6 72 2-74 335-407 (679)
208 3e4b_A ALGK; tetratricopeptide 95.2 0.059 2E-06 37.4 6.3 47 8-54 174-223 (452)
209 1hz4_A MALT regulatory protein 95.0 0.099 3.4E-06 34.5 6.8 57 7-63 132-193 (373)
210 2xm6_A Protein corresponding t 94.8 0.17 5.8E-06 35.0 7.7 49 6-56 35-87 (490)
211 1klx_A Cysteine rich protein B 94.7 0.1 3.5E-06 30.4 5.6 41 7-49 90-134 (138)
212 3mv2_B Coatomer subunit epsilo 94.5 0.14 4.7E-06 34.7 6.6 73 3-76 127-209 (310)
213 3ax2_A Mitochondrial import re 94.5 0.24 8.1E-06 26.7 6.2 39 14-52 21-59 (73)
214 4b4t_Q 26S proteasome regulato 94.1 0.14 4.8E-06 34.2 6.0 57 7-63 132-194 (434)
215 1hz4_A MALT regulatory protein 94.1 0.24 8.3E-06 32.5 7.0 62 11-73 94-163 (373)
216 4e6h_A MRNA 3'-END-processing 94.0 0.38 1.3E-05 35.7 8.4 73 2-75 58-133 (679)
217 2cfu_A SDSA1; SDS-hydrolase, l 93.8 0.33 1.1E-05 35.9 7.8 53 10-62 449-501 (658)
218 2uy1_A Cleavage stimulation fa 93.2 0.18 6.3E-06 35.6 5.4 48 2-50 205-252 (493)
219 2ff4_A Probable regulatory pro 93.1 0.57 1.9E-05 32.2 7.7 54 10-63 171-224 (388)
220 1zbp_A Hypothetical protein VP 92.9 0.84 2.9E-05 30.5 7.9 47 3-49 24-70 (273)
221 1xi4_A Clathrin heavy chain; a 92.6 0.52 1.8E-05 38.4 7.6 29 8-36 1103-1131(1630)
222 3e4b_A ALGK; tetratricopeptide 92.5 0.23 7.9E-06 34.4 5.2 31 7-37 245-278 (452)
223 4b4t_Q 26S proteasome regulato 92.5 0.41 1.4E-05 31.9 6.2 34 10-43 4-37 (434)
224 1om2_A Protein (mitochondrial 92.5 0.38 1.3E-05 27.2 5.0 37 15-51 25-61 (95)
225 2crb_A Nuclear receptor bindin 91.5 0.55 1.9E-05 26.5 4.9 29 10-38 15-43 (97)
226 3ffl_A Anaphase-promoting comp 91.2 0.75 2.6E-05 28.5 5.8 54 10-63 63-141 (167)
227 4gns_B Protein CSD3, chitin bi 90.8 0.18 6.3E-06 38.0 3.3 35 2-36 363-397 (754)
228 1b89_A Protein (clathrin heavy 90.6 0.62 2.1E-05 33.1 5.7 25 12-36 150-174 (449)
229 1b89_A Protein (clathrin heavy 88.3 1.4 4.9E-05 31.3 6.1 48 13-60 210-257 (449)
230 4a5x_A MITD1, MIT domain-conta 88.3 2 6.9E-05 23.5 9.2 35 5-39 9-45 (86)
231 4h7y_A Dual specificity protei 87.7 1.7 5.9E-05 26.7 5.5 40 6-45 90-129 (161)
232 1xi4_A Clathrin heavy chain; a 87.4 1.5 5E-05 35.9 6.2 52 9-60 1279-1330(1630)
233 1ya0_A SMG-7 transcript varian 87.2 1 3.5E-05 32.3 4.9 54 2-55 178-231 (497)
234 2w2u_A Hypothetical P60 katani 86.8 2.5 8.6E-05 23.0 6.9 30 10-39 19-48 (83)
235 1nzn_A CGI-135 protein, fissio 86.1 1 3.5E-05 26.6 3.8 71 5-76 30-105 (126)
236 2v6y_A AAA family ATPase, P60 85.1 3.1 0.00011 22.5 7.2 30 10-39 11-40 (83)
237 3t5x_A PCI domain-containing p 84.8 2.6 8.8E-05 26.5 5.4 35 10-44 14-48 (203)
238 2yhe_A SEC-alkyl sulfatase; hy 83.8 0.23 7.8E-06 36.9 0.0 61 10-72 461-521 (668)
239 1zbp_A Hypothetical protein VP 83.1 3.5 0.00012 27.5 5.7 49 18-66 5-53 (273)
240 2g0u_A Type III secretion syst 82.5 4.7 0.00016 22.5 6.4 41 25-65 31-71 (92)
241 2rpa_A Katanin P60 ATPase-cont 80.5 5 0.00017 21.6 8.1 50 13-62 15-70 (78)
242 4gns_B Protein CSD3, chitin bi 80.3 5.7 0.0002 30.0 6.5 53 13-65 340-392 (754)
243 1ya0_A SMG-7 transcript varian 79.9 9.8 0.00033 27.2 7.4 50 13-62 155-204 (497)
244 3ffl_A Anaphase-promoting comp 77.8 3 0.0001 25.8 3.7 44 9-53 121-164 (167)
245 2uy1_A Cleavage stimulation fa 77.4 9.9 0.00034 26.7 6.8 51 7-58 11-61 (493)
246 2ff4_A Probable regulatory pro 76.9 3.2 0.00011 28.4 4.1 37 2-38 197-233 (388)
247 2cpt_A SKD1 protein, vacuolar 76.0 9 0.00031 22.1 10.1 29 11-39 19-47 (117)
248 2ca5_A MXIH; transport protein 74.7 8.4 0.00029 21.1 6.8 40 24-63 24-63 (85)
249 4b4t_S RPN3, 26S proteasome re 71.6 1.9 6.6E-05 31.3 2.0 35 10-44 270-304 (523)
250 1wfd_A Hypothetical protein 15 71.6 10 0.00036 20.8 9.6 29 11-39 16-44 (93)
251 3bu8_A Telomeric repeat-bindin 66.4 9.3 0.00032 24.8 4.1 38 19-56 123-160 (235)
252 4gq2_M Nucleoporin NUP120; bet 64.9 5.9 0.0002 30.4 3.5 32 6-37 836-867 (950)
253 3bqo_A Telomeric repeat-bindin 63.6 5.2 0.00018 25.6 2.5 37 18-54 125-161 (211)
254 2v6x_A Vacuolar protein sortin 62.6 16 0.00053 19.5 9.4 30 10-39 13-42 (85)
255 1wy6_A Hypothetical protein ST 62.4 24 0.00083 21.6 5.3 34 6-39 121-154 (172)
256 1v0d_A DNA fragmentation facto 62.2 3.2 0.00011 28.4 1.4 48 43-91 182-230 (329)
257 2vkj_A TM1634; membrane protei 61.9 19 0.00064 20.2 7.4 37 10-47 53-89 (106)
258 3kae_A CDC27, possible protein 61.4 29 0.00098 22.1 6.5 46 5-50 108-154 (242)
259 2e2a_A Protein (enzyme IIA); h 60.7 11 0.00038 21.4 3.4 33 6-38 16-48 (105)
260 4h7y_A Dual specificity protei 59.7 22 0.00077 21.8 4.8 40 4-43 7-52 (161)
261 1wcr_A PTS system, N, N'-diace 59.5 12 0.00041 21.1 3.4 32 7-38 15-46 (103)
262 3t5v_B Nuclear mRNA export pro 59.1 26 0.00087 24.9 5.7 35 9-43 219-254 (455)
263 3k1s_A PTS system, cellobiose- 56.7 18 0.00063 20.6 3.9 32 7-38 19-50 (109)
264 3l8r_A PTCA, putative PTS syst 54.9 20 0.00068 20.9 3.9 32 7-38 34-65 (120)
265 2ijq_A Hypothetical protein; s 54.3 34 0.0012 20.8 6.9 51 12-62 34-88 (161)
266 4fhn_B Nucleoporin NUP120; pro 53.3 12 0.00042 29.2 3.5 32 6-37 838-869 (1139)
267 2prs_A High-affinity zinc upta 50.8 47 0.0016 21.6 5.6 54 32-89 132-188 (284)
268 3gi1_A LBP, laminin-binding pr 49.9 43 0.0015 21.9 5.4 55 31-89 136-193 (286)
269 3cx3_A Lipoprotein; zinc-bindi 48.9 33 0.0011 22.3 4.7 54 32-89 135-191 (284)
270 1pq4_A Periplasmic binding pro 48.3 49 0.0017 21.6 5.4 54 32-89 148-204 (291)
271 2dl1_A Spartin; SPG20, MIT, st 47.9 39 0.0013 19.6 4.8 26 13-38 25-50 (116)
272 3mkq_A Coatomer beta'-subunit; 47.3 76 0.0026 22.8 7.7 30 7-36 678-707 (814)
273 3s6n_M SurviVal motor neuron p 47.0 17 0.00059 16.5 2.1 16 25-40 17-32 (37)
274 1xvl_A Mn transporter, MNTC pr 46.0 35 0.0012 22.8 4.5 54 32-89 160-218 (321)
275 3mkr_B Coatomer subunit alpha; 45.2 70 0.0024 21.7 6.7 32 10-41 102-133 (320)
276 2o1e_A YCDH; alpha-beta protei 45.1 41 0.0014 22.3 4.8 54 32-89 148-204 (312)
277 3kez_A Putative sugar binding 44.3 40 0.0014 23.4 4.8 30 9-38 337-366 (461)
278 2ymb_A MITD1, MIT domain-conta 44.2 4.8 0.00016 26.6 0.0 35 5-39 16-52 (257)
279 3ujp_A Mn transporter subunit; 43.2 35 0.0012 22.7 4.2 54 32-89 146-204 (307)
280 3eab_A Spastin; spastin, MIT, 43.2 18 0.00062 20.0 2.3 31 8-38 7-47 (89)
281 3r9m_A BRO1 domain-containing 43.2 48 0.0016 22.6 4.9 30 10-39 253-282 (376)
282 4b4t_R RPN7, 26S proteasome re 42.6 18 0.00061 25.0 2.7 34 9-42 130-163 (429)
283 1toa_A Tromp-1, protein (perip 42.4 50 0.0017 21.9 4.8 54 32-89 153-211 (313)
284 3myv_A SUSD superfamily protei 40.3 44 0.0015 23.2 4.4 30 9-38 189-218 (454)
285 3h3m_A Flagellar protein FLIT; 40.0 55 0.0019 19.0 4.5 27 63-89 97-123 (126)
286 3mfq_A TROA, high-affinity zin 39.8 32 0.0011 22.5 3.5 54 32-89 119-177 (282)
287 2oo2_A Hypothetical protein AF 39.6 47 0.0016 18.1 4.9 30 9-38 34-63 (86)
288 3lew_A SUSD-like carbohydrate 39.2 46 0.0016 23.4 4.4 31 9-39 202-232 (495)
289 3kez_A Putative sugar binding 39.2 46 0.0016 23.1 4.4 29 10-38 196-224 (461)
290 3mcx_A SUSD superfamily protei 38.6 48 0.0016 23.1 4.4 31 10-40 202-232 (477)
291 3a7m_A Flagellar protein FLIT; 38.4 45 0.0015 19.2 3.6 26 64-89 85-110 (122)
292 3o48_A Mitochondria fission 1 38.3 62 0.0021 19.1 8.0 68 8-76 38-109 (134)
293 2pmr_A Uncharacterized protein 38.1 50 0.0017 18.0 4.9 30 9-38 38-67 (87)
294 3mv2_A Coatomer subunit alpha; 37.1 80 0.0027 21.5 5.2 31 10-40 114-144 (325)
295 3hh8_A Metal ABC transporter s 36.8 40 0.0014 22.2 3.6 55 31-89 138-197 (294)
296 3hdx_A SUSD homolog, SUSD supe 36.2 55 0.0019 22.8 4.4 31 9-39 196-226 (478)
297 3mkq_B Coatomer subunit alpha; 34.3 69 0.0024 19.7 4.2 31 8-38 32-62 (177)
298 3ph0_C ASCG; type III secretio 34.3 17 0.00058 18.5 1.1 18 13-30 43-60 (61)
299 3hdx_A SUSD homolog, SUSD supe 34.2 62 0.0021 22.5 4.4 31 9-39 363-393 (478)
300 3nkz_A Flagellar protein FLIT; 34.0 69 0.0024 18.4 7.7 26 64-89 88-113 (123)
301 3myv_A SUSD superfamily protei 34.0 53 0.0018 22.7 4.1 30 9-38 334-365 (454)
302 1qsa_A Protein (soluble lytic 32.4 66 0.0023 23.6 4.4 31 8-38 317-347 (618)
303 3snx_A SUSD homolog, putative 32.4 47 0.0016 23.2 3.6 32 8-39 189-220 (460)
304 3c3r_A Programmed cell death 6 32.0 91 0.0031 21.3 4.9 30 10-39 275-304 (380)
305 3jq1_A SUSD superfamily protei 31.2 86 0.0029 21.9 4.8 31 9-39 360-390 (481)
306 2rkl_A Vacuolar protein sortin 31.2 53 0.0018 16.3 3.9 24 15-38 25-48 (53)
307 3mcx_A SUSD superfamily protei 30.5 56 0.0019 22.7 3.7 30 9-38 356-386 (477)
308 3snx_A SUSD homolog, putative 30.1 74 0.0025 22.2 4.2 31 9-39 320-351 (460)
309 2kmf_A Photosystem II 11 kDa p 29.9 83 0.0028 18.1 3.9 35 28-62 22-56 (115)
310 1y8m_A FIS1; mitochondria, unk 29.9 92 0.0031 18.6 8.5 70 6-76 35-108 (144)
311 3mv2_A Coatomer subunit alpha; 29.5 1.3E+02 0.0046 20.4 6.0 42 5-46 201-243 (325)
312 2p58_C Putative type III secre 29.5 44 0.0015 19.2 2.5 47 12-63 42-88 (116)
313 3ub0_A Non-structural protein 28.6 1.1E+02 0.0039 19.2 7.3 26 25-51 18-43 (199)
314 3qtm_A Uncharacterized protein 28.1 1.1E+02 0.0036 20.8 4.5 38 25-62 100-142 (346)
315 2y6x_A PSB27, photosystem II 1 28.0 90 0.0031 17.9 3.9 35 28-62 18-52 (113)
316 4a1g_A Mitotic checkpoint seri 27.8 1E+02 0.0035 18.5 5.6 33 10-42 101-133 (152)
317 3qnk_A Putative lipoprotein; a 27.3 81 0.0028 22.2 4.1 30 10-39 182-211 (517)
318 4gof_A Small glutamine-rich te 27.2 49 0.0017 16.3 2.1 20 25-44 29-48 (52)
319 3nqp_A SUSD superfamily protei 26.3 1.2E+02 0.004 21.4 4.8 30 9-38 382-411 (514)
320 2d2s_A Exocyst complex compone 26.1 1.2E+02 0.0041 19.3 4.4 22 18-39 26-47 (235)
321 1zb1_A BRO1 protein; AIP1, BRO 24.8 90 0.0031 21.3 3.9 28 11-38 258-285 (392)
322 3mkr_B Coatomer subunit alpha; 24.2 1.7E+02 0.0058 19.8 5.7 40 5-44 192-232 (320)
323 3esl_A Checkpoint serine/threo 24.0 1.4E+02 0.0048 18.8 7.2 32 10-41 115-146 (202)
324 3i4g_A SUSD-like carbohydrate 23.8 1.2E+02 0.0041 21.6 4.4 30 10-39 198-227 (528)
325 3ls0_A SLL1638 protein, PSBQ; 23.6 69 0.0023 18.9 2.7 21 23-43 112-132 (133)
326 2lxb_A Small glutamine-rich te 23.4 73 0.0025 16.8 2.5 21 25-45 34-54 (74)
327 3msv_A Nuclear import adaptor, 23.3 1.7E+02 0.006 20.1 4.9 38 25-62 147-189 (393)
328 1ixm_A SPO0B, protein (sporula 23.0 94 0.0032 19.1 3.4 21 18-38 40-60 (192)
329 2zan_A Vacuolar protein sortin 22.7 18 0.00062 25.1 0.0 29 11-39 12-40 (444)
330 3qnk_A Putative lipoprotein; a 22.2 1.6E+02 0.0053 20.8 4.8 31 9-39 391-421 (517)
331 3l22_A SUSD superfamily protei 21.8 52 0.0018 22.7 2.2 26 12-37 203-228 (441)
332 2xs1_A Programmed cell death 6 21.7 1.6E+02 0.0055 21.9 4.9 29 10-38 260-288 (704)
333 3lew_A SUSD-like carbohydrate 21.3 97 0.0033 21.7 3.6 29 10-39 347-375 (495)
334 2uwj_G Type III export protein 21.1 75 0.0026 18.2 2.4 46 12-62 41-86 (115)
335 3zsu_A TLL2057 protein, cyanoq 20.5 94 0.0032 18.3 2.8 20 23-42 109-128 (130)
336 3iv0_A SUSD homolog; NP_809186 20.2 1.3E+02 0.0044 21.0 3.9 31 9-39 367-398 (481)
337 2wvi_A Mitotic checkpoint seri 20.1 1.6E+02 0.0054 17.8 7.4 34 9-42 95-128 (164)
338 1s0p_A CAP, adenylyl cyclase-a 20.1 94 0.0032 19.2 2.9 64 26-89 34-103 (176)
No 1
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.61 E-value=3.3e-16 Score=95.42 Aligned_cols=72 Identities=31% Similarity=0.335 Sum_probs=62.8
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR-EVKLLQKSLKQLQAESNKRDAKFYANMFA 73 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~mf~ 73 (91)
||+++|+++++|+++|.++..+|++++|+.+|+++++++|++. .+...+..+...+++..++++..|++||+
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~ 161 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ 161 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC-------
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6889999999999999999999999999999999999999999 88999999999999999999899999996
No 2
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.43 E-value=2.5e-13 Score=95.44 Aligned_cols=78 Identities=32% Similarity=0.521 Sum_probs=64.7
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD 78 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~ 78 (91)
+||+++|+++++|+++|.+++.+|++++|+.+|+++++++|++..+...+..+...++++.++++..+++||.++...
T Consensus 342 ~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k~~~~ 419 (457)
T 1kt0_A 342 KALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQ 419 (457)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 368899999999999999999999999999999999999999999999999999999999999999999999887544
No 3
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.43 E-value=7.8e-13 Score=89.56 Aligned_cols=76 Identities=32% Similarity=0.474 Sum_probs=72.5
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK 77 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~ 77 (91)
||+++|+++++|+++|.++..+|++++|+.+|+++++++|++..+...+..+...+++..++++..|++||+++..
T Consensus 222 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 297 (336)
T 1p5q_A 222 ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAE 297 (336)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999988653
No 4
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.41 E-value=1.1e-12 Score=77.79 Aligned_cols=85 Identities=14% Similarity=0.081 Sum_probs=70.9
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
+|+++|.++.+|+.+|.++..+|++++|+.+|+++++++|++..+...+..+...+++..++. ..+++.....+...++
T Consensus 39 al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~-~~~~~al~l~P~~~~a 117 (126)
T 4gco_A 39 AVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQ-RAYEDALQVDPSNEEA 117 (126)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHH
T ss_pred HHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHCcCCHHH
Confidence 678889999999999999999999999999999999999999888888888888888887774 4678888877777777
Q ss_pred hhhhhh
Q 034553 82 ATKVGY 87 (91)
Q Consensus 82 ~~~~g~ 87 (91)
...++.
T Consensus 118 ~~~l~~ 123 (126)
T 4gco_A 118 REGVRN 123 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
No 5
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.36 E-value=1.5e-12 Score=89.64 Aligned_cols=73 Identities=34% Similarity=0.448 Sum_probs=65.2
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFA 73 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~ 73 (91)
+||+++|+++++|+++|.++..+|++++|+.+|+++++++|++..+...+..+...+++..++++..+++||+
T Consensus 298 ~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~~~~kmf~ 370 (370)
T 1ihg_A 298 EALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMFA 370 (370)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3688999999999999999999999999999999999999999999999999999999999998888899984
No 6
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.33 E-value=4.1e-12 Score=79.30 Aligned_cols=74 Identities=28% Similarity=0.321 Sum_probs=59.2
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARV 75 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~ 75 (91)
+++++|+++++++++|.++..+|++++|+..|+++++++|++..+...+..+...+++..++++..+++||+..
T Consensus 114 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 114 VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 57889999999999999999999999999999999999999999999999999999999999888899999873
No 7
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.31 E-value=8.1e-12 Score=76.63 Aligned_cols=85 Identities=15% Similarity=0.101 Sum_probs=63.7
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
+++++|+++.+++.+|.+++.+|++++|+..|++++.++|++..++..+..+....+++.++. ..|.+.....+.....
T Consensus 28 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai-~~~~~al~l~P~~~~~ 106 (151)
T 3gyz_A 28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAA-DLYAVAFALGKNDYTP 106 (151)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSSSCCHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHH-HHHHHHHhhCCCCcHH
Confidence 677788888888888888888888888888888888888888888888888877777777764 3567777766666555
Q ss_pred hhhhhh
Q 034553 82 ATKVGY 87 (91)
Q Consensus 82 ~~~~g~ 87 (91)
..++|.
T Consensus 107 ~~~lg~ 112 (151)
T 3gyz_A 107 VFHTGQ 112 (151)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555553
No 8
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.28 E-value=6.2e-13 Score=82.96 Aligned_cols=61 Identities=13% Similarity=0.073 Sum_probs=56.6
Q ss_pred ccccCCCHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 3 LDCDCHNVKAL----YRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 3 l~~~p~~~ka~----~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
++++|++.++| |++|.++..+|++++|+.+|+++++++|++..+...+..+++.+++..++
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~~~k 155 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQ 155 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 44599999999 99999999999999999999999999999999999999999998887664
No 9
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.26 E-value=1.1e-11 Score=75.11 Aligned_cols=80 Identities=13% Similarity=0.081 Sum_probs=53.6
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
+|+++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+....+...++-...+.+.....+....+
T Consensus 57 al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~ 136 (150)
T 4ga2_A 57 YINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAV 136 (150)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHH
Confidence 56777777777777777777777777777777777777777777777777776666554433232335555554444333
No 10
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.23 E-value=1.1e-10 Score=68.38 Aligned_cols=74 Identities=14% Similarity=-0.010 Sum_probs=64.6
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT 76 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~ 76 (91)
+|+++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.+.....+
T Consensus 43 al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~P 116 (121)
T 1hxi_A 43 VCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAAL-ASLRAWLLSQP 116 (121)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHC---
T ss_pred HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCc
Confidence 678899999999999999999999999999999999999999999999999999998888774 35676665543
No 11
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.22 E-value=2.2e-12 Score=87.53 Aligned_cols=76 Identities=22% Similarity=0.375 Sum_probs=36.1
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK 77 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~ 77 (91)
+|+++|+++++|+++|.+++.+|++++|+.+|+++++++|++..+...+..+........++.+..|++||+..+.
T Consensus 256 al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 256 VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 6789999999999999999999999999999999999999999999999999888877777778899999988654
No 12
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.21 E-value=6.8e-11 Score=69.89 Aligned_cols=84 Identities=11% Similarity=-0.021 Sum_probs=70.6
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
+..+||+.+.+|..+|.+++..|+|++|+..|+++++++|++..+...+..+...+++..++.. .+.+.....+.....
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~-~~~~al~~~p~~~~a 83 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALD-DCDTCIRLDSKFIKG 83 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHH-HHHHHHHhhhhhhHH
Confidence 4578999999999999999999999999999999999999999999999999999998888744 567777666555555
Q ss_pred hhhhh
Q 034553 82 ATKVG 86 (91)
Q Consensus 82 ~~~~g 86 (91)
...+|
T Consensus 84 ~~~lg 88 (126)
T 4gco_A 84 YIRKA 88 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
No 13
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.19 E-value=5.1e-11 Score=73.00 Aligned_cols=74 Identities=11% Similarity=-0.007 Sum_probs=67.0
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT 76 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~ 76 (91)
+++++|+++.+|+.+|.++..+|+|++|+..|+++++++|+++.+...+..+...+++..++.. .+.+.....+
T Consensus 62 al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~-~~~~al~l~~ 135 (151)
T 3gyz_A 62 LCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKE-CFELVIQHSN 135 (151)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCC
Confidence 6789999999999999999999999999999999999999999999999999999999988744 5777766643
No 14
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.16 E-value=5.8e-11 Score=71.84 Aligned_cols=86 Identities=14% Similarity=0.134 Sum_probs=76.5
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
++..+|+++.++|.+|.+|+.+|+|++|+..|+++++++|++..+...+..+....++..++. ..+++.....+....+
T Consensus 23 a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~-~~~~~al~~~p~~~~~ 101 (150)
T 4ga2_A 23 STPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAV-ECYRRSVELNPTQKDL 101 (150)
T ss_dssp HSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHH
T ss_pred hcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHH-HHHHHHHHhCCCCHHH
Confidence 567889999999999999999999999999999999999999999999999999999988874 4688888887777777
Q ss_pred hhhhhhc
Q 034553 82 ATKVGYF 88 (91)
Q Consensus 82 ~~~~g~f 88 (91)
..++|..
T Consensus 102 ~~~la~~ 108 (150)
T 4ga2_A 102 VLKIAEL 108 (150)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777754
No 15
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.16 E-value=1.3e-10 Score=67.44 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=64.8
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARV 75 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~ 75 (91)
+|+++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+...+++..++. ..+.+.....
T Consensus 30 al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~-~~~~~al~~~ 102 (126)
T 3upv_A 30 MIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL-ETLDAARTKD 102 (126)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHH-HHHHHHHHhC
Confidence 678899999999999999999999999999999999999999999999999999888887764 3566666654
No 16
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.15 E-value=4.7e-10 Score=71.22 Aligned_cols=85 Identities=11% Similarity=0.017 Sum_probs=72.5
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQ-----------AESNKRDAKFYAN 70 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~ 70 (91)
+|+++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+.... ++..++. ..+.+
T Consensus 31 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~-~~~~~ 109 (217)
T 2pl2_A 31 ALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQAL-SVLKD 109 (217)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHH-HHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHH-HHHHH
Confidence 67899999999999999999999999999999999999999999999999999888 7777764 45777
Q ss_pred hhhcccCCchhhhhhhh
Q 034553 71 MFARVTKDSSVATKVGY 87 (91)
Q Consensus 71 mf~~~~~~~~~~~~~g~ 87 (91)
.....+........+|.
T Consensus 110 al~~~P~~~~~~~~lg~ 126 (217)
T 2pl2_A 110 AERVNPRYAPLHLQRGL 126 (217)
T ss_dssp HHHHCTTCHHHHHHHHH
T ss_pred HHHhCcccHHHHHHHHH
Confidence 77766665555555554
No 17
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.15 E-value=7.5e-11 Score=74.52 Aligned_cols=52 Identities=15% Similarity=0.049 Sum_probs=25.7
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLK 54 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~ 54 (91)
|+++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+.
T Consensus 81 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 81 LQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY 132 (208)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555544444444443
No 18
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.10 E-value=3.6e-10 Score=68.50 Aligned_cols=78 Identities=18% Similarity=0.049 Sum_probs=63.4
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS 80 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~ 80 (91)
+|+++|+++.+|+.+|.+++.+|++++|+..|+++++++|++..+...+..+...+++..++. ..+.+.+...+....
T Consensus 37 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 37 ALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAK-EAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHSSSCC
T ss_pred HHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCCchH
Confidence 577889999999999999999999999999999999999999888888888888888877764 356666666554433
No 19
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.08 E-value=3.4e-10 Score=68.42 Aligned_cols=72 Identities=7% Similarity=-0.109 Sum_probs=41.1
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
++.++|+++.+|+.+|.++..+|++++|+..|++++.++|++..+...+..+...+++..++. ..+.+....
T Consensus 47 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~ 118 (148)
T 2vgx_A 47 LCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAE-SGLFLAQEL 118 (148)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred HHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHH-HHHHHHHHH
Confidence 345556666666666666666666666666666666666666666666665555555555543 234444444
No 20
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.08 E-value=7.5e-10 Score=65.89 Aligned_cols=71 Identities=6% Similarity=-0.098 Sum_probs=38.9
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
+.++|+++.+|+.+|.++..+|++++|+..|++++.++|++..+...+..+...+++..++.. .+.+....
T Consensus 45 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~ 115 (142)
T 2xcb_A 45 CMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAES-GFYSARAL 115 (142)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH
T ss_pred HHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH-HHHHHHHh
Confidence 445555555555555555555555555555555555555555555555555555555554422 34444433
No 21
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.07 E-value=4.7e-10 Score=64.76 Aligned_cols=79 Identities=6% Similarity=0.140 Sum_probs=67.9
Q ss_pred cccc---cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553 2 VLDC---DCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD 78 (91)
Q Consensus 2 al~~---~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~ 78 (91)
+|++ +|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++.. .+.+.....+..
T Consensus 16 al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~p~~ 94 (117)
T 3k9i_A 16 AIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE-LLLKIIAETSDD 94 (117)
T ss_dssp HHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHCCC
T ss_pred HHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCc
Confidence 5677 799999999999999999999999999999999999999999999999999998888743 567776665544
Q ss_pred chh
Q 034553 79 SSV 81 (91)
Q Consensus 79 ~~~ 81 (91)
..+
T Consensus 95 ~~~ 97 (117)
T 3k9i_A 95 ETI 97 (117)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 22
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.07 E-value=6.2e-10 Score=67.26 Aligned_cols=85 Identities=9% Similarity=-0.035 Sum_probs=73.4
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
++.++|+++.+++.+|.+++..|++++|+..|++++.++|++..++..+..+....++..++. ..+.+.....+.....
T Consensus 13 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~l~p~~~~~ 91 (148)
T 2vgx_A 13 LNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAI-HSYSYGAVMDIXEPRF 91 (148)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSTTCTHH
T ss_pred HHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcCCCCchH
Confidence 688999999999999999999999999999999999999999999999999999998888874 4678877776666566
Q ss_pred hhhhhh
Q 034553 82 ATKVGY 87 (91)
Q Consensus 82 ~~~~g~ 87 (91)
..++|.
T Consensus 92 ~~~lg~ 97 (148)
T 2vgx_A 92 PFHAAE 97 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555553
No 23
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.06 E-value=6.9e-10 Score=66.06 Aligned_cols=86 Identities=9% Similarity=-0.073 Sum_probs=73.4
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS 80 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~ 80 (91)
++++++|++..+++.+|.+++..|++++|+..|++++.++|++..+...+..+....++..++. ..+.+.....+....
T Consensus 9 ~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~~~ 87 (142)
T 2xcb_A 9 MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQAL-QSYSYGALMDINEPR 87 (142)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCTH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcCCCCcH
Confidence 4788999999999999999999999999999999999999999999999999999998888874 367777777666555
Q ss_pred hhhhhhh
Q 034553 81 VATKVGY 87 (91)
Q Consensus 81 ~~~~~g~ 87 (91)
+...+|.
T Consensus 88 ~~~~lg~ 94 (142)
T 2xcb_A 88 FPFHAAE 94 (142)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 24
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.05 E-value=3.3e-10 Score=78.43 Aligned_cols=85 Identities=15% Similarity=0.185 Sum_probs=57.3
Q ss_pred cccccCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIAD-LILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS 80 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~-~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~ 80 (91)
+|+++|++..+|+.+|.++..+|+ +++|+..|+++++++|++..++..+..+...++...++ ...+.+++...+....
T Consensus 123 al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eA-l~~~~kal~ldP~~~~ 201 (382)
T 2h6f_A 123 AIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQE-LEFIADILNQDAKNYH 201 (382)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH-HHHHHHHHHHCTTCHH
T ss_pred HHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHH-HHHHHHHHHhCccCHH
Confidence 566777777777777777777775 77777777777777777777777777776666665554 3356666666665555
Q ss_pred hhhhhhh
Q 034553 81 VATKVGY 87 (91)
Q Consensus 81 ~~~~~g~ 87 (91)
...+.|+
T Consensus 202 a~~~lg~ 208 (382)
T 2h6f_A 202 AWQHRQW 208 (382)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 25
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.04 E-value=3.4e-10 Score=70.47 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=53.0
Q ss_pred CcccccCCCHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIA-----------DLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES 60 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg-----------~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 60 (91)
+||+++|++..+|+.+|.+|..+| ++++|+..|++|++++|++...+..+..+.+...-.
T Consensus 71 ~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~el~ 141 (158)
T 1zu2_A 71 EALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLH 141 (158)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHH
T ss_pred HHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCHhcc
Confidence 378999999999999999999885 899999999999999999998888887776655443
No 26
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.04 E-value=1.8e-10 Score=79.79 Aligned_cols=84 Identities=11% Similarity=0.030 Sum_probs=46.3
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
+|+++|++..+|+.+|.++..+|++++|+..|+++++++|++..++..+..+...++...++ ...+.++....+.....
T Consensus 158 al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eA-l~~~~~al~l~P~~~~a 236 (382)
T 2h6f_A 158 IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNE-LQYVDQLLKEDVRNNSV 236 (382)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH-HHHHHHHHHHCTTCHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHH-HHHHHHHHHhCCCCHHH
Confidence 45556666666666666666666666666666666666666666665555555555554443 23445555444444444
Q ss_pred hhhhh
Q 034553 82 ATKVG 86 (91)
Q Consensus 82 ~~~~g 86 (91)
.+++|
T Consensus 237 ~~~lg 241 (382)
T 2h6f_A 237 WNQRY 241 (382)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 27
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.02 E-value=1.1e-09 Score=62.00 Aligned_cols=69 Identities=16% Similarity=0.045 Sum_probs=57.6
Q ss_pred ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
.+|+++.+++.+|.+++.+|++++|+..|+++++++|++..+...+..+....++..++.. .+++....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~-~~~~al~l 70 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID-TYAQGIEV 70 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhh
Confidence 5899999999999999999999999999999999999999999999999888888777643 45554433
No 28
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.02 E-value=3.3e-10 Score=65.73 Aligned_cols=56 Identities=21% Similarity=0.239 Sum_probs=52.2
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEAD------PQNREVKLLQKSLKQLQ 57 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~------p~~~~~~~~l~~~~~~~ 57 (91)
+|+++|+++.+|+.+|.++..+|++++|+..|+++++++ |++..+...+..+...+
T Consensus 64 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 64 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 678999999999999999999999999999999999999 99999999998887653
No 29
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.02 E-value=1.5e-09 Score=62.16 Aligned_cols=72 Identities=15% Similarity=0.111 Sum_probs=62.6
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
+++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++.. .+.+....
T Consensus 11 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~ 82 (115)
T 2kat_A 11 MLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQ-AWESGLAA 82 (115)
T ss_dssp HHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHh
Confidence 5788999999999999999999999999999999999999999999999999888887777643 45555444
No 30
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.01 E-value=8.2e-10 Score=81.93 Aligned_cols=84 Identities=13% Similarity=0.025 Sum_probs=44.2
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
||+++|+++.+|+.+|.++..+|++++|+..|+++++++|++.++...+..+...+++..++. ..|++.....+.....
T Consensus 35 Al~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~-~~~~kAl~l~P~~~~a 113 (723)
T 4gyw_A 35 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGAL-QCYTRAIQINPAFADA 113 (723)
T ss_dssp HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHH
Confidence 445555555555555555555555555555555555555555555555555555555554442 2344444444444444
Q ss_pred hhhhh
Q 034553 82 ATKVG 86 (91)
Q Consensus 82 ~~~~g 86 (91)
.+++|
T Consensus 114 ~~~Lg 118 (723)
T 4gyw_A 114 HSNLA 118 (723)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 31
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.98 E-value=1.3e-09 Score=80.93 Aligned_cols=86 Identities=10% Similarity=0.007 Sum_probs=73.9
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS 80 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~ 80 (91)
+||+++|+++.+|+.+|.++..+|++++|+..|+++++++|++.++...+..+....++..++. ..|++.....+....
T Consensus 68 ~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi-~~~~~Al~l~P~~~~ 146 (723)
T 4gyw_A 68 EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAI-ASYRTALKLKPDFPD 146 (723)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCSCCHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCChH
Confidence 3688999999999999999999999999999999999999999999999999999988888874 467888877777666
Q ss_pred hhhhhhh
Q 034553 81 VATKVGY 87 (91)
Q Consensus 81 ~~~~~g~ 87 (91)
...++|.
T Consensus 147 a~~~L~~ 153 (723)
T 4gyw_A 147 AYCNLAH 153 (723)
T ss_dssp HHHHHHH
T ss_pred HHhhhhh
Confidence 6666664
No 32
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.96 E-value=1.2e-09 Score=68.10 Aligned_cols=79 Identities=5% Similarity=-0.016 Sum_probs=67.3
Q ss_pred cccccCC-------CHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHH-------CCCCHHHH----HHHHHHHHHHH
Q 034553 2 VLDCDCH-------NVK-----ALYRRAQVYMEIADLILAELDIKKAIEA-------DPQNREVK----LLQKSLKQLQA 58 (91)
Q Consensus 2 al~~~p~-------~~k-----a~~rrg~a~~~lg~~~~A~~~~~~al~l-------~p~~~~~~----~~l~~~~~~~~ 58 (91)
||+++|+ +.. +|+.+|.++..+|+|++|+.+|++++++ +|++..++ ..+..+...++
T Consensus 37 AL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lg 116 (159)
T 2hr2_A 37 AMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLG 116 (159)
T ss_dssp HHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCC
Confidence 6778887 444 9999999999999999999999999999 99999999 99999999999
Q ss_pred HHHHHHHHHHHHhhhcccCCchh
Q 034553 59 ESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 59 ~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
...++.. .|++.....+++..+
T Consensus 117 r~eEAl~-~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 117 RGAEAMP-EFKKVVEMIEERKGE 138 (159)
T ss_dssp CHHHHHH-HHHHHHHHHHHCCSC
T ss_pred CHHHHHH-HHHHHHhcCCCcHHH
Confidence 9988754 677777766555444
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.96 E-value=3.4e-09 Score=67.24 Aligned_cols=85 Identities=15% Similarity=0.151 Sum_probs=73.9
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
+++++|+++.+++.+|.++..+|++++|+..|+++++++ ++..+...+..+....++..++. ..+++.....+.....
T Consensus 110 al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~P~~~~~ 187 (217)
T 2pl2_A 110 AERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEAL-AQYAKALEQAPKDLDL 187 (217)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHSTTCHHH
T ss_pred HHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCChHH
Confidence 678899999999999999999999999999999999999 99999999999999998888874 4678888877766666
Q ss_pred hhhhhhc
Q 034553 82 ATKVGYF 88 (91)
Q Consensus 82 ~~~~g~f 88 (91)
...+|..
T Consensus 188 ~~~la~~ 194 (217)
T 2pl2_A 188 RVRYASA 194 (217)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
No 34
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.96 E-value=1.1e-09 Score=66.36 Aligned_cols=61 Identities=25% Similarity=0.176 Sum_probs=53.9
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE--VKLLQKSLKQLQAESNK 62 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~--~~~~l~~~~~~~~~~~~ 62 (91)
+|+++|+++.+|+.+|.++..+|++++|+..|+++++++|++.. +...+..++.++.+..+
T Consensus 71 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~ 133 (164)
T 3sz7_A 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANR 133 (164)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999999999999876 67777777777766544
No 35
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.96 E-value=1.2e-09 Score=64.35 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=51.9
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR-------EVKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
||+++|+++.+|+.+|.+++.+|+|++|+.+|+++++++|++. .+...+..+...++...++. ..|.+.+..
T Consensus 34 Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~-~~~~kal~~ 112 (127)
T 4gcn_A 34 AIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAV-QWFHRSLSE 112 (127)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred HHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhh
Confidence 6788899999999999999999999999999999999888764 24444555555555555543 245554443
No 36
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.95 E-value=3.1e-09 Score=61.85 Aligned_cols=74 Identities=12% Similarity=0.089 Sum_probs=57.8
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT 76 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~ 76 (91)
+++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.+.....+
T Consensus 35 al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~-~~~~~a~~~~p 108 (137)
T 3q49_B 35 AITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAI-ANLQRAYSLAK 108 (137)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHH
T ss_pred HHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHCh
Confidence 567788888888888888888888888888888888888888888888888888777776663 34555555443
No 37
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.95 E-value=1.6e-09 Score=65.43 Aligned_cols=73 Identities=14% Similarity=0.168 Sum_probs=64.3
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDS 79 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~ 79 (91)
+|.++.+|+.+|.+++.+|+|++|+.+++++++++|++..+...+..+...++...++. ..+.+.....+...
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~-~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAE-EDLKLLLRNHPAAA 131 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHH-HHHHHHHhcCCCCH
Confidence 78888999999999999999999999999999999999999999999999999888874 35677776655543
No 38
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.95 E-value=6.1e-09 Score=58.32 Aligned_cols=82 Identities=13% Similarity=0.121 Sum_probs=67.1
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
++..+|+++.+++.+|.++..+|++++|+..++++++++|++..+...+..+....++..++. ..+.+.....+.....
T Consensus 30 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~ 108 (118)
T 1elw_A 30 AIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAK-RTYEEGLKHEANNPQL 108 (118)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTTCTTCHHH
T ss_pred HHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHcCCCCHHH
Confidence 467889999999999999999999999999999999999999999999998888888777764 3567766665554444
Q ss_pred hhh
Q 034553 82 ATK 84 (91)
Q Consensus 82 ~~~ 84 (91)
...
T Consensus 109 ~~~ 111 (118)
T 1elw_A 109 KEG 111 (118)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 39
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.94 E-value=4.2e-09 Score=65.49 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=63.8
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-----------HH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADL----------ILAELDIKKAIEADPQNREVKLLQKSLKQLQA-----------ES 60 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~----------~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~-----------~~ 60 (91)
+++++|+++.+|++.|.++..++++ ++|+..|++|++++|++.++...+..+...++ ..
T Consensus 28 Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~ 107 (158)
T 1zu2_A 28 TYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNF 107 (158)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccH
Confidence 6789999999999999999999875 59999999999999999999999999988775 44
Q ss_pred HHHHHHHHHHhhhcccCC
Q 034553 61 NKRDAKFYANMFARVTKD 78 (91)
Q Consensus 61 ~~~~~~~~~~mf~~~~~~ 78 (91)
.++ ...|++.....+..
T Consensus 108 ~eA-~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 108 DLA-TQFFQQAVDEQPDN 124 (158)
T ss_dssp HHH-HHHHHHHHHHCTTC
T ss_pred HHH-HHHHHHHHHhCCCC
Confidence 444 34677777765543
No 40
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.94 E-value=3.7e-09 Score=64.54 Aligned_cols=74 Identities=12% Similarity=0.093 Sum_probs=65.8
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT 76 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~ 76 (91)
++.++|.++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+++..+..+
T Consensus 99 a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p 172 (184)
T 3vtx_A 99 AIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV-KYFKKALEKEE 172 (184)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTTH
T ss_pred HHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH-HHHHHHHhCCc
Confidence 567899999999999999999999999999999999999999999999999999998888874 45777766643
No 41
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.94 E-value=5.3e-09 Score=65.91 Aligned_cols=78 Identities=13% Similarity=0.141 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhhhc
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVGYF 88 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~g~f 88 (91)
+..++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.+.....+.......++|.+
T Consensus 54 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~P~~~~a~~~lg~~ 131 (208)
T 3urz_A 54 SKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDAL-RMYEKILQLEADNLAANIFLGNY 131 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCCHHHHHHHHHH
Confidence 4566779999999999999999999999999999999999999999999988874 46888888877777777777754
No 42
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.92 E-value=3.8e-09 Score=59.29 Aligned_cols=42 Identities=7% Similarity=0.110 Sum_probs=26.4
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN 43 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~ 43 (91)
+++++|+++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus 30 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 30 LITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 345566666666666666666666666666666666666665
No 43
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.91 E-value=1e-08 Score=62.51 Aligned_cols=69 Identities=17% Similarity=0.006 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK 77 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~ 77 (91)
+++..|+.+|.++..+|+|++|+..|+++++++|++..+...+..+....+...+.. ..+.+.....+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~-~~~~~~~~~~~~ 71 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAI-ESLKKFVVLDTT 71 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCCC
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHhcCch
Confidence 455666666777777777777777777777777766666666666666655555442 233444433333
No 44
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.90 E-value=5.5e-09 Score=56.76 Aligned_cols=81 Identities=20% Similarity=0.230 Sum_probs=63.5
Q ss_pred cC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhh
Q 034553 6 DC-HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATK 84 (91)
Q Consensus 6 ~p-~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~ 84 (91)
+| .++.+++.+|.++...|++++|+..|+++++++|++..+...+..+....++..++. ..+.+.....+........
T Consensus 4 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~a~~~~p~~~~~~~~ 82 (91)
T 1na3_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI-EYYQKALELDPNNAEAKQN 82 (91)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHHHH
T ss_pred cccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcCCCCHHHHHH
Confidence 44 467889999999999999999999999999999999998888888888888777764 3567777666665555555
Q ss_pred hhh
Q 034553 85 VGY 87 (91)
Q Consensus 85 ~g~ 87 (91)
+|.
T Consensus 83 l~~ 85 (91)
T 1na3_A 83 LGN 85 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 45
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.89 E-value=7.5e-09 Score=59.33 Aligned_cols=83 Identities=14% Similarity=0.145 Sum_probs=65.8
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
+++++|.+..+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.+.....+.....
T Consensus 42 al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~p~~~~~ 120 (133)
T 2lni_A 42 AIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAM-DVYQKALDLDSSCKEA 120 (133)
T ss_dssp HHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCGGGTHH
T ss_pred HHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHH-HHHHHHHHhCCCchHH
Confidence 567889999999999999999999999999999999999999999988888888887777764 3566666655443333
Q ss_pred hhhh
Q 034553 82 ATKV 85 (91)
Q Consensus 82 ~~~~ 85 (91)
...+
T Consensus 121 ~~~l 124 (133)
T 2lni_A 121 ADGY 124 (133)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 46
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.85 E-value=9.8e-09 Score=57.02 Aligned_cols=46 Identities=22% Similarity=0.306 Sum_probs=42.3
Q ss_pred cccccCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHH
Q 034553 2 VLDCDCHNVK-ALYRRAQVYMEIADLILAELDIKKAIEADPQNREVK 47 (91)
Q Consensus 2 al~~~p~~~k-a~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~ 47 (91)
+++++|+++. +++.+|.++..+|++++|+..|+++++++|++..+.
T Consensus 26 al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 26 FLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 5678999999 999999999999999999999999999999998776
No 47
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.85 E-value=1.9e-08 Score=57.06 Aligned_cols=84 Identities=13% Similarity=0.127 Sum_probs=63.7
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
++..+|+++.+++.+|.++..+|++++|+..++++++++|++..+...+..+....++..++. ..+.+.....+.....
T Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~~~~~p~~~~~ 116 (131)
T 2vyi_A 38 AIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAV-AYYKKALELDPDNETY 116 (131)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSTTCHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHH-HHHHHHHhcCccchHH
Confidence 456788888999999999999999999999999999999988888888888887777776663 3566666655544444
Q ss_pred hhhhh
Q 034553 82 ATKVG 86 (91)
Q Consensus 82 ~~~~g 86 (91)
...+|
T Consensus 117 ~~~l~ 121 (131)
T 2vyi_A 117 KSNLK 121 (131)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 48
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.84 E-value=1.9e-08 Score=59.70 Aligned_cols=51 Identities=22% Similarity=0.406 Sum_probs=27.2
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSL 53 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~ 53 (91)
++++|.++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+
T Consensus 74 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 124 (166)
T 1a17_A 74 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 124 (166)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555544443333
No 49
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.83 E-value=7.9e-09 Score=65.09 Aligned_cols=73 Identities=14% Similarity=0.123 Sum_probs=44.4
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE-------VKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
+++++|+++.+|+.+|.++..+|++++|+..|+++++++|++.. +...+..+....++..++. ..+.+....
T Consensus 68 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~-~~~~~al~~ 146 (228)
T 4i17_A 68 AIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAE-ENYKHATDV 146 (228)
T ss_dssp HHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHTTS
T ss_pred HHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHH-HHHHHHHhc
Confidence 45667777777777777777777777777777777777777763 3444444444444444442 245555544
Q ss_pred c
Q 034553 75 V 75 (91)
Q Consensus 75 ~ 75 (91)
.
T Consensus 147 ~ 147 (228)
T 4i17_A 147 T 147 (228)
T ss_dssp S
T ss_pred C
Confidence 3
No 50
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.82 E-value=1.6e-08 Score=68.30 Aligned_cols=84 Identities=10% Similarity=0.054 Sum_probs=71.4
Q ss_pred cccccCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHN---------------VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAK 66 (91)
Q Consensus 2 al~~~p~~---------------~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~ 66 (91)
||+++|++ +.+|+.+|.++..+|+|++|+..|+++++++|++..+...+..+...+++..++. .
T Consensus 173 Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~-~ 251 (336)
T 1p5q_A 173 IVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELAR-A 251 (336)
T ss_dssp HHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-H
T ss_pred HHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH-H
Confidence 57788888 7999999999999999999999999999999999999999999999998888874 4
Q ss_pred HHHHhhhcccCCchhhhhhh
Q 034553 67 FYANMFARVTKDSSVATKVG 86 (91)
Q Consensus 67 ~~~~mf~~~~~~~~~~~~~g 86 (91)
.+.+.....+....+...+|
T Consensus 252 ~~~~al~l~P~~~~a~~~l~ 271 (336)
T 1p5q_A 252 DFQKVLQLYPNNKAAKTQLA 271 (336)
T ss_dssp HHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHH
Confidence 67777777666555554444
No 51
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.82 E-value=9.7e-09 Score=57.09 Aligned_cols=72 Identities=10% Similarity=-0.013 Sum_probs=41.8
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQ--NREVKLLQKSLKQLQ-AESNKRDAKFYANMFAR 74 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~--~~~~~~~l~~~~~~~-~~~~~~~~~~~~~mf~~ 74 (91)
+++++|.+..+++.+|.++..+|++++|+..|+++++++|+ +..+...+..+.... ++..++. ..+.+....
T Consensus 32 a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~-~~~~~~~~~ 106 (112)
T 2kck_A 32 AIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAE-IAEARAKLE 106 (112)
T ss_dssp HHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHH-HHHHHHGGG
T ss_pred HHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHH-HHHHHHhhc
Confidence 34556666666666666666666666666666666666666 666666666665555 5544442 234444433
No 52
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.82 E-value=2.8e-08 Score=57.14 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=63.4
Q ss_pred cccccCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034553 2 VLDCDCHNV---KALYRRAQVYMEIADLILAELDIKKAIEADPQN---REVKLLQKSLKQLQAESNKRDAKFYANMFARV 75 (91)
Q Consensus 2 al~~~p~~~---ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~ 75 (91)
+++.+|+++ .+++.+|.+++.+|++++|+..|++++.++|++ ..+...+..+....++..++. ..+.++....
T Consensus 28 ~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~~~~~~ 106 (129)
T 2xev_A 28 FLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQ-QTLQQVATQY 106 (129)
T ss_dssp HHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHS
T ss_pred HHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHC
Confidence 456788888 899999999999999999999999999999999 788888888888888877764 3567776665
Q ss_pred cCC
Q 034553 76 TKD 78 (91)
Q Consensus 76 ~~~ 78 (91)
+..
T Consensus 107 p~~ 109 (129)
T 2xev_A 107 PGS 109 (129)
T ss_dssp TTS
T ss_pred CCC
Confidence 443
No 53
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=3.5e-08 Score=57.52 Aligned_cols=79 Identities=16% Similarity=0.085 Sum_probs=61.7
Q ss_pred cccccCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553 2 VLDCDCHN---VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD 78 (91)
Q Consensus 2 al~~~p~~---~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~ 78 (91)
+++++|++ ..+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.+.....+..
T Consensus 54 a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~al~~~p~~ 132 (148)
T 2dba_A 54 ALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAV-LDLQRCVSLEPKN 132 (148)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCSSC
T ss_pred HHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCc
Confidence 46778877 8889999999999999999999999999999988888888888888877777663 3566666655544
Q ss_pred chh
Q 034553 79 SSV 81 (91)
Q Consensus 79 ~~~ 81 (91)
..+
T Consensus 133 ~~~ 135 (148)
T 2dba_A 133 KVF 135 (148)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 54
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.79 E-value=1.7e-08 Score=67.03 Aligned_cols=78 Identities=14% Similarity=0.095 Sum_probs=64.3
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDS 79 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~ 79 (91)
+++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++.++...+..+....+...++-...++++....+...
T Consensus 192 ~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 192 MADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 467799999999999999999999999999999999999999999999988887777665543445566665555433
No 55
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.79 E-value=1.5e-08 Score=62.69 Aligned_cols=57 Identities=14% Similarity=0.161 Sum_probs=50.4
Q ss_pred cccc-C-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 034553 3 LDCD-C-HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAE 59 (91)
Q Consensus 3 l~~~-p-~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 59 (91)
++.+ | ++.+++|.+|.+++++|+|+.|+..++++|+++|+|..+......++.++..
T Consensus 62 l~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~k 120 (152)
T 1pc2_A 62 LPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 120 (152)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 3445 6 6799999999999999999999999999999999999999998888876643
No 56
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.79 E-value=3.5e-08 Score=61.24 Aligned_cols=84 Identities=12% Similarity=-0.012 Sum_probs=68.5
Q ss_pred cccccCCCH----------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNV----------------KALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDA 65 (91)
Q Consensus 2 al~~~p~~~----------------ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 65 (91)
++++.|.++ .+++.+|.++..+|++++|+..|+++++++|++..+...+..+...+++..++.
T Consensus 64 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~- 142 (198)
T 2fbn_A 64 ALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAK- 142 (198)
T ss_dssp HHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHH-
T ss_pred HHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHH-
Confidence 466777776 899999999999999999999999999999999999999999998888887764
Q ss_pred HHHHHhhhcccCCchhhhhhh
Q 034553 66 KFYANMFARVTKDSSVATKVG 86 (91)
Q Consensus 66 ~~~~~mf~~~~~~~~~~~~~g 86 (91)
..+++.....+....+...++
T Consensus 143 ~~~~~al~~~p~~~~~~~~l~ 163 (198)
T 2fbn_A 143 ENLYKAASLNPNNLDIRNSYE 163 (198)
T ss_dssp HHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCcHHHHHHHH
Confidence 356777666555544444443
No 57
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.78 E-value=4.7e-08 Score=54.99 Aligned_cols=83 Identities=20% Similarity=0.236 Sum_probs=56.1
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
+++.+|+++.+++.+|.++...|++++|+..|++++.++|++..+...+..+....+...++. ..+.++....+.....
T Consensus 35 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~ 113 (125)
T 1na0_A 35 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI-EYYQKALELDPNNAEA 113 (125)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHH
T ss_pred HHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHhCCCcHHH
Confidence 345677777788888888888888888888888888888877777777777766666665553 3456665554444443
Q ss_pred hhhh
Q 034553 82 ATKV 85 (91)
Q Consensus 82 ~~~~ 85 (91)
...+
T Consensus 114 ~~~l 117 (125)
T 1na0_A 114 KQNL 117 (125)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 58
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.78 E-value=2e-08 Score=70.48 Aligned_cols=84 Identities=12% Similarity=0.125 Sum_probs=68.7
Q ss_pred cccccCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHN---------------VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAK 66 (91)
Q Consensus 2 al~~~p~~---------------~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~ 66 (91)
||+++|.+ ..+|+.+|.+++.+|+|++|+.+|+++++++|++..+...+..+...++++.++. .
T Consensus 294 Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~-~ 372 (457)
T 1kt0_A 294 IVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAK-G 372 (457)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHH-H
T ss_pred HHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHH-H
Confidence 57778888 7999999999999999999999999999999999999999999999998888874 4
Q ss_pred HHHHhhhcccCCchhhhhhh
Q 034553 67 FYANMFARVTKDSSVATKVG 86 (91)
Q Consensus 67 ~~~~mf~~~~~~~~~~~~~g 86 (91)
.+.+.....+....+...+|
T Consensus 373 ~~~~al~l~P~~~~a~~~l~ 392 (457)
T 1kt0_A 373 DFEKVLEVNPQNKAARLQIS 392 (457)
T ss_dssp HHHHHHTTC----CHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHH
Confidence 57777777665555554444
No 59
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.78 E-value=2.8e-08 Score=70.25 Aligned_cols=84 Identities=14% Similarity=0.043 Sum_probs=68.2
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
||+++|++..+|+.+|.++..+|++++|+..|+++++++|++..+...+..+...+++..++.. .+++.....+.....
T Consensus 32 Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~-~~~~al~~~p~~~~~ 110 (477)
T 1wao_1 32 AIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALR-DYETVVKVKPHDKDA 110 (477)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHSTTCTTH
T ss_pred HHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCCHHH
Confidence 6778999999999999999999999999999999999999999999999988888888887743 567777665555444
Q ss_pred hhhhh
Q 034553 82 ATKVG 86 (91)
Q Consensus 82 ~~~~g 86 (91)
...+|
T Consensus 111 ~~~l~ 115 (477)
T 1wao_1 111 KMKYQ 115 (477)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 60
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.77 E-value=8e-08 Score=55.69 Aligned_cols=83 Identities=7% Similarity=-0.095 Sum_probs=66.4
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhh
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVA 82 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~ 82 (91)
+..+|.++.+++..|.+++..|+|++|+..|++++.++|++..+...+..+....+...++. ..+.+.....+......
T Consensus 2 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~ 80 (137)
T 3q49_B 2 PHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQAL-ADCRRALELDGQSVKAH 80 (137)
T ss_dssp ----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHH
T ss_pred CCCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHhCchhHHHH
Confidence 35678999999999999999999999999999999999999999999999998888887764 35667666655544444
Q ss_pred hhhh
Q 034553 83 TKVG 86 (91)
Q Consensus 83 ~~~g 86 (91)
..+|
T Consensus 81 ~~l~ 84 (137)
T 3q49_B 81 FFLG 84 (137)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 61
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.77 E-value=6.2e-08 Score=52.42 Aligned_cols=55 Identities=33% Similarity=0.320 Sum_probs=50.0
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQL 56 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~ 56 (91)
+++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+...
T Consensus 35 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 35 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999999999999999888887776543
No 62
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.76 E-value=2.6e-08 Score=62.70 Aligned_cols=77 Identities=9% Similarity=-0.039 Sum_probs=64.4
Q ss_pred cccccC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc
Q 034553 2 VLDCDC-HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDS 79 (91)
Q Consensus 2 al~~~p-~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~ 79 (91)
+|+++| .+..+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+++.....+...
T Consensus 33 al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~-~~~~~al~~~p~~~ 110 (228)
T 4i17_A 33 YLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYI-ATLTEGIKAVPGNA 110 (228)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSTTCH
T ss_pred HHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHH-HHHHHHHHHCCCcH
Confidence 567788 888999999999999999999999999999999999999999999988888887764 35677776655544
No 63
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.76 E-value=4.7e-09 Score=76.88 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=28.4
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES 60 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 60 (91)
++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+....++.
T Consensus 460 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~ 517 (681)
T 2pzi_A 460 AERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNT 517 (681)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCC
T ss_pred hccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCh
Confidence 3444555555555555555555555555555555555555444444444444444433
No 64
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.75 E-value=1.6e-08 Score=58.24 Aligned_cols=48 Identities=8% Similarity=-0.071 Sum_probs=44.5
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLL 49 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~ 49 (91)
+++++|+++.+++.+|.++..+|++++|+..|+++++++|+++.+...
T Consensus 53 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 100 (117)
T 3k9i_A 53 GVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSY 100 (117)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHT
T ss_pred HHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 678899999999999999999999999999999999999999876543
No 65
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.74 E-value=2.7e-08 Score=55.24 Aligned_cols=81 Identities=12% Similarity=0.099 Sum_probs=66.3
Q ss_pred ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC--Cchhh
Q 034553 5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK--DSSVA 82 (91)
Q Consensus 5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~--~~~~~ 82 (91)
++|+++.+++.+|.++...|++++|+..|+++++++|.+..+...+..+....++..++. ..+.+.....+. ...+.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~a~~~~~~~~~~~~~ 79 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV-DCYNYVINVIEDEYNKDVW 79 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTSCCTTCHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCcccchHHHH
Confidence 479999999999999999999999999999999999999999999999988888877764 356776666554 33443
Q ss_pred hhhh
Q 034553 83 TKVG 86 (91)
Q Consensus 83 ~~~g 86 (91)
..+|
T Consensus 80 ~~l~ 83 (112)
T 2kck_A 80 AAKA 83 (112)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 66
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=3.3e-08 Score=57.67 Aligned_cols=53 Identities=28% Similarity=0.497 Sum_probs=49.0
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLK 54 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~ 54 (91)
+++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+.
T Consensus 91 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 91 AIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999888877764
No 67
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.73 E-value=3.9e-08 Score=66.10 Aligned_cols=83 Identities=13% Similarity=0.112 Sum_probs=38.7
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhh
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVA 82 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~ 82 (91)
++++|+++.+|+.+|.++...|++++|+..|+++++++|++..+...+..+....+...++. ..+.++....+....+.
T Consensus 264 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~ 342 (388)
T 1w3b_A 264 IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV-RLYRKALEVFPEFAAAH 342 (388)
T ss_dssp HHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH-HHHHHHTTSCTTCHHHH
T ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCcHHHH
Confidence 34445555555555555555555555555555555555555555444444444444443332 23444444433333333
Q ss_pred hhhh
Q 034553 83 TKVG 86 (91)
Q Consensus 83 ~~~g 86 (91)
..+|
T Consensus 343 ~~l~ 346 (388)
T 1w3b_A 343 SNLA 346 (388)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 68
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.73 E-value=1.8e-08 Score=66.42 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=56.2
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
+|+++|+++.+|+.+|.++..+|++++|+.+|+++++++|++..+...+..+...+++..++.. .+.+.+..
T Consensus 30 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~l 101 (281)
T 2c2l_A 30 AITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIA-NLQRAYSL 101 (281)
T ss_dssp HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH
T ss_pred HHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHh
Confidence 5677888888888888888888888888888888888888888888888888777777766643 34554444
No 69
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.73 E-value=5e-08 Score=59.28 Aligned_cols=76 Identities=11% Similarity=0.097 Sum_probs=51.3
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHH--HHHHHHHHHHhhhcccCC
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSL-KQLQAES--NKRDAKFYANMFARVTKD 78 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~-~~~~~~~--~~~~~~~~~~mf~~~~~~ 78 (91)
+++.+|+++.+|+.+|.++...|++++|+..|+++++++|++..+...+..+ ....+.. .++ ...+.+.....+..
T Consensus 36 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A-~~~~~~al~~~p~~ 114 (177)
T 2e2e_A 36 KIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT-RAMIDKALALDSNE 114 (177)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH-HHHHHHHHHHCTTC
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHhCCCc
Confidence 4566788888888888888888888888888888888888887777777766 4444443 333 23455555544433
No 70
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.72 E-value=2.3e-08 Score=65.47 Aligned_cols=58 Identities=24% Similarity=0.235 Sum_probs=35.6
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES 60 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 60 (91)
++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+...+++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 356 (359)
T 3ieg_A 299 LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS 356 (359)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHh
Confidence 4456666666666666666666666666666666666666666666666665555443
No 71
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.72 E-value=4.1e-08 Score=57.67 Aligned_cols=67 Identities=16% Similarity=0.059 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
++.+.++..+|.+++..|+|++|+..|+++++++|++..+...+..+...++++.++.. .+.+....
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~-~~~~al~~ 71 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ-FCEKAVEV 71 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHH-HHHHHHHh
Confidence 45577899999999999999999999999999999999999999999999888877643 44554443
No 72
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.72 E-value=4.8e-08 Score=65.64 Aligned_cols=86 Identities=14% Similarity=0.098 Sum_probs=56.5
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
+++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.++....+....+
T Consensus 229 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~p~~~~~ 307 (388)
T 1w3b_A 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE-DCYNTALRLCPTHADS 307 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHCTTCHHH
T ss_pred HHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCcccHHH
Confidence 345677777777777777777777777777777777777777777777766666666665553 3456666555555555
Q ss_pred hhhhhhc
Q 034553 82 ATKVGYF 88 (91)
Q Consensus 82 ~~~~g~f 88 (91)
.+.+|..
T Consensus 308 ~~~l~~~ 314 (388)
T 1w3b_A 308 LNNLANI 314 (388)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 73
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.72 E-value=2.9e-08 Score=55.48 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=49.6
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQ 55 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~ 55 (91)
+++++|+++.+++.+|.++..+|++++|+..++++++++|++..+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 64 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 567899999999999999999999999999999999999999998888877653
No 74
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.68 E-value=7.8e-08 Score=68.34 Aligned_cols=75 Identities=13% Similarity=0.095 Sum_probs=42.0
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK 77 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~ 77 (91)
+++++|++..+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.+.....+.
T Consensus 49 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~ 123 (568)
T 2vsy_A 49 GLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAA-AAYTRAHQLLPE 123 (568)
T ss_dssp HHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTT
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCC
Confidence 345566666666666666666666666666666666666666655555555555555554442 234444444333
No 75
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.68 E-value=1.6e-07 Score=52.43 Aligned_cols=69 Identities=10% Similarity=-0.061 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD 78 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~ 78 (91)
++.+++.+|.+++..|+|++|+..|+++++++|++..+...+..+....++..++. ..+.+.....+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAI-QMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHhCCCc
Confidence 57899999999999999999999999999999999999999999999998888774 3577777665543
No 76
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.68 E-value=6.4e-08 Score=54.83 Aligned_cols=57 Identities=25% Similarity=0.112 Sum_probs=51.3
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQA 58 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~ 58 (91)
+++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+...++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 72 AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 567899999999999999999999999999999999999999988888877766543
No 77
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.67 E-value=3.7e-08 Score=55.88 Aligned_cols=71 Identities=10% Similarity=0.076 Sum_probs=46.8
Q ss_pred cCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553 6 DCHNVKALYRRAQVYMEIAD---LILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK 77 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~---~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~ 77 (91)
+|+++..++.+|.+++..++ .++|...++++|++||++..+...+..+....+++.++ ...|.+++...+.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~A-i~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEA-IDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH-HHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhCCC
Confidence 56677777777777765555 56777777777777777777777777766666666665 3356666655443
No 78
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.67 E-value=3.2e-08 Score=60.54 Aligned_cols=70 Identities=14% Similarity=0.038 Sum_probs=57.6
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN--REVKLLQKSLKQLQAESNKRDAKFYANMF 72 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~mf 72 (91)
+++++|+++.+++.+|.++..+|++++|+..|+++++++|+. ..++..+..+....+...+... .|++.+
T Consensus 100 al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~-~y~~al 171 (176)
T 2r5s_A 100 ELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS-KYRRQL 171 (176)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH-HHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH-HHHHHH
Confidence 577899999999999999999999999999999999999975 4688888888877776655433 445444
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.66 E-value=5e-07 Score=53.82 Aligned_cols=76 Identities=11% Similarity=0.096 Sum_probs=53.0
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD 78 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~ 78 (91)
+++.+|.++.+++..|.++...|++++|+..++++++++|++..+...+..+....++..++. ..+.++....+..
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~~~~~~~~~ 109 (186)
T 3as5_A 34 VYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAV-PLLIKVAEANPIN 109 (186)
T ss_dssp TCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCTTC
T ss_pred HHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHH-HHHHHHHhcCcHh
Confidence 566777788888888888888888888888888888888877777777777666666655543 2455555444433
No 80
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.65 E-value=7.1e-08 Score=55.37 Aligned_cols=55 Identities=9% Similarity=0.095 Sum_probs=48.4
Q ss_pred cccccCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 034553 2 VLDCDCHN---VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQL 56 (91)
Q Consensus 2 al~~~p~~---~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~ 56 (91)
+++.+|++ +.+++.+|.++..+|++++|+..|+++++..|++..+...+..+...
T Consensus 65 ~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 65 LVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 56788999 99999999999999999999999999999999998777766665543
No 81
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.65 E-value=2.2e-07 Score=55.06 Aligned_cols=79 Identities=14% Similarity=0.059 Sum_probs=67.7
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
+++++|.++.+++.+|.++..+|++++|+..++++++++|++..+...+..+....++..++. ..+.+.....+.....
T Consensus 39 al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~a~~~~p~~~~~ 117 (166)
T 1a17_A 39 AIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL-RDYETVVKVKPHDKDA 117 (166)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSTTCHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHH-HHHHHHHHhCCCCHHH
Confidence 577899999999999999999999999999999999999999999999999988888887764 4567777665554443
No 82
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.65 E-value=3.3e-08 Score=60.49 Aligned_cols=50 Identities=14% Similarity=0.001 Sum_probs=43.7
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQK 51 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~ 51 (91)
++++++|+++.+++.+|.++..+|++++|+..|++++.++| +..+...+.
T Consensus 31 ~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 31 TLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp TSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred HHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 46889999999999999999999999999999999999999 776554443
No 83
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.63 E-value=8.3e-08 Score=67.45 Aligned_cols=84 Identities=11% Similarity=-0.037 Sum_probs=59.2
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQ---------AESNKRDAKFYANMF 72 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~mf 72 (91)
+|+++|+++.+|+.+|.++..+|++++|+..|+++++++|+ ..+...+..+.... ++..++. ..+++..
T Consensus 129 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~-~~~~~al 206 (474)
T 4abn_A 129 AVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSV-RQAKLAV 206 (474)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHH-HHHHHHH
T ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHH-HHHHHHH
Confidence 56778888888888888888888888888888888888887 57777777777666 6666553 3566666
Q ss_pred hcccCCchhhhhhhh
Q 034553 73 ARVTKDSSVATKVGY 87 (91)
Q Consensus 73 ~~~~~~~~~~~~~g~ 87 (91)
...+........+|.
T Consensus 207 ~~~p~~~~~~~~lg~ 221 (474)
T 4abn_A 207 QMDVLDGRSWYILGN 221 (474)
T ss_dssp HHCTTCHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHH
Confidence 665555555555543
No 84
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.63 E-value=1.4e-07 Score=62.84 Aligned_cols=83 Identities=7% Similarity=-0.037 Sum_probs=47.2
Q ss_pred ccccCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553 3 LDCDCH--NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS 80 (91)
Q Consensus 3 l~~~p~--~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~ 80 (91)
++++|+ ++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....+...++. ..+.++....+....
T Consensus 204 l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~p~~~~ 282 (365)
T 4eqf_A 204 AHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAV-EAYTRALEIQPGFIR 282 (365)
T ss_dssp HHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHH
T ss_pred HHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCchH
Confidence 445565 56666666666666666666666666666666666666666666665555555542 244555544444333
Q ss_pred hhhhhh
Q 034553 81 VATKVG 86 (91)
Q Consensus 81 ~~~~~g 86 (91)
+...+|
T Consensus 283 ~~~~l~ 288 (365)
T 4eqf_A 283 SRYNLG 288 (365)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344333
No 85
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.63 E-value=1.6e-07 Score=66.68 Aligned_cols=86 Identities=10% Similarity=0.123 Sum_probs=67.2
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS 80 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~ 80 (91)
++++++|++..+|+.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.+.....+....
T Consensus 14 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~~~ 92 (568)
T 2vsy_A 14 AAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAA-VLLQQASDAAPEHPG 92 (568)
T ss_dssp -------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHhcCCCCHH
Confidence 4688999999999999999999999999999999999999999999999999999888887774 456777776665555
Q ss_pred hhhhhhh
Q 034553 81 VATKVGY 87 (91)
Q Consensus 81 ~~~~~g~ 87 (91)
...++|.
T Consensus 93 ~~~~la~ 99 (568)
T 2vsy_A 93 IALWLGH 99 (568)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 86
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.63 E-value=9.6e-08 Score=69.96 Aligned_cols=84 Identities=6% Similarity=0.046 Sum_probs=73.8
Q ss_pred cccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhh
Q 034553 4 DCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVAT 83 (91)
Q Consensus 4 ~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~ 83 (91)
+.+|++..+++.+|.+++.+|++++|+..|+++++++|++..+...+..+....++..++.. .|.+.....+.......
T Consensus 427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~-~~~~al~l~P~~~~~~~ 505 (681)
T 2pzi_A 427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATK-HFTEVLDTFPGELAPKL 505 (681)
T ss_dssp -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHSTTCSHHHH
T ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCChHHHH
Confidence 78899999999999999999999999999999999999999999999999999998888754 67888887777777777
Q ss_pred hhhhc
Q 034553 84 KVGYF 88 (91)
Q Consensus 84 ~~g~f 88 (91)
++|..
T Consensus 506 ~lg~~ 510 (681)
T 2pzi_A 506 ALAAT 510 (681)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66653
No 87
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.62 E-value=6.1e-08 Score=55.42 Aligned_cols=55 Identities=16% Similarity=0.092 Sum_probs=49.7
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQL 56 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~ 56 (91)
+++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+...
T Consensus 76 a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 76 CIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999998888777776543
No 88
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.62 E-value=1.4e-07 Score=59.27 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=51.9
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARV 75 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~ 75 (91)
+++++|.++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.+.....
T Consensus 165 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~ 237 (258)
T 3uq3_A 165 MIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL-ETLDAARTKD 237 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHH
T ss_pred HHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHhC
Confidence 456677777888888888888888888888888888888877777777777777776666553 2445544443
No 89
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.62 E-value=1.5e-07 Score=59.85 Aligned_cols=72 Identities=8% Similarity=-0.004 Sum_probs=44.5
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
+++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.++...
T Consensus 69 al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~ 140 (275)
T 1xnf_A 69 ALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ-DDLLAFYQD 140 (275)
T ss_dssp HHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHH-HHHHHHHHh
Confidence 345566666666666666666666666666666666666666666666666666555555542 234444443
No 90
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.61 E-value=1.3e-07 Score=58.53 Aligned_cols=62 Identities=24% Similarity=0.223 Sum_probs=36.0
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH----------------HHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR----------------EVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~----------------~~~~~l~~~~~~~~~~~~~ 63 (91)
+++++|+++.+|+.+|.++..+|++++|+..|++++++.|++. .+...+..+....++..++
T Consensus 63 al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 140 (213)
T 1hh8_A 63 SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA 140 (213)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH
Confidence 3455566666666666666666666666666666666555544 5555555555555555444
No 91
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.61 E-value=1.7e-07 Score=62.05 Aligned_cols=74 Identities=7% Similarity=-0.053 Sum_probs=54.7
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT 76 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~ 76 (91)
+++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.++....+
T Consensus 243 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~~ 316 (368)
T 1fch_A 243 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV-EHFLEALNMQR 316 (368)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHHH
T ss_pred HHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHhCC
Confidence 456678888888888888888888888888888888888888888777777777777766653 34555555443
No 92
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.59 E-value=3.3e-07 Score=57.27 Aligned_cols=79 Identities=9% Similarity=0.084 Sum_probs=52.4
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
+++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....+...++. ..+.+++...+....+
T Consensus 49 ~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~ 127 (243)
T 2q7f_A 49 AIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAK-DMFEKALRAGMENGDL 127 (243)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHTCCSHHH
T ss_pred HHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHH-HHHHHHHHhCCCCHHH
Confidence 455677777777777777777777777777777777777777777777776666666655543 2455555544433333
No 93
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.58 E-value=1.2e-07 Score=53.84 Aligned_cols=72 Identities=21% Similarity=0.173 Sum_probs=52.6
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN-------REVKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
+++++|.++.+++.+|.++..+|++++|+..|++++.+.|++ ..+...+..+....+...++. ..+.+....
T Consensus 30 a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~ 108 (131)
T 1elr_A 30 AKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAI-HFYNKSLAE 108 (131)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred HHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHh
Confidence 456778888888888888888888888888888888887766 666777777776666666553 345555554
No 94
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.57 E-value=7.5e-08 Score=54.24 Aligned_cols=41 Identities=17% Similarity=0.192 Sum_probs=39.0
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQ 42 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~ 42 (91)
+++++|+++.+|+.+|.++..+|++++|+..|++++++.|+
T Consensus 33 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 33 LVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 67899999999999999999999999999999999999875
No 95
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.57 E-value=1.2e-07 Score=63.07 Aligned_cols=73 Identities=11% Similarity=0.019 Sum_probs=60.4
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARV 75 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~ 75 (91)
+++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.++....
T Consensus 91 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~ 163 (365)
T 4eqf_A 91 AILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDAC-EALKNWIKQN 163 (365)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHC
T ss_pred HHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHH-HHHHHHHHhC
Confidence 567789999999999999999999999999999999999999988888888888887777764 3556665543
No 96
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.57 E-value=6.2e-07 Score=50.71 Aligned_cols=44 Identities=16% Similarity=-0.077 Sum_probs=41.2
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR 44 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~ 44 (91)
+||++||+++++++-.|.+++..|+|++|+..++++++.+|.++
T Consensus 34 ~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 34 QALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred HHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 36889999999999999999999999999999999999999843
No 97
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.56 E-value=9.9e-08 Score=67.07 Aligned_cols=62 Identities=16% Similarity=0.030 Sum_probs=43.3
Q ss_pred cccccC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDC---HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 2 al~~~p---~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
+++++| +++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+...+++..++
T Consensus 247 al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 247 AEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp HHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 455666 77777777777777777777777777777777777777777777776666665544
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.56 E-value=4.3e-07 Score=51.30 Aligned_cols=84 Identities=19% Similarity=0.218 Sum_probs=58.2
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
+++.+|.++.+++..|.++...|++++|+..+++++.++|.+..+...+..+....++..++. ..+..+....+....+
T Consensus 27 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~ 105 (136)
T 2fo7_A 27 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI-EYYQKALELDPRSAEA 105 (136)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHHCTTCHHH
T ss_pred HHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHH-HHHHHHHHhCCCChHH
Confidence 355678888888888888888888888888888888888888877777777766666665553 3455555544433333
Q ss_pred hhhhh
Q 034553 82 ATKVG 86 (91)
Q Consensus 82 ~~~~g 86 (91)
...+|
T Consensus 106 ~~~la 110 (136)
T 2fo7_A 106 WYNLG 110 (136)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 99
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.56 E-value=1.4e-07 Score=64.81 Aligned_cols=82 Identities=12% Similarity=0.026 Sum_probs=69.5
Q ss_pred cccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhh
Q 034553 4 DCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVAT 83 (91)
Q Consensus 4 ~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~ 83 (91)
.++|.+..+|+.+|.+++.+|+|++|+..|+++++++|++..+...+..+...++++.++. ..+++.....+....+..
T Consensus 267 ~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~-~~l~~Al~l~P~~~~~~~ 345 (370)
T 1ihg_A 267 KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQAL-ADLKKAQEIAPEDKAIQA 345 (370)
T ss_dssp GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCCCHHHHH
Confidence 3788999999999999999999999999999999999999999999999999998888874 457777777665555544
Q ss_pred hhh
Q 034553 84 KVG 86 (91)
Q Consensus 84 ~~g 86 (91)
.++
T Consensus 346 ~l~ 348 (370)
T 1ihg_A 346 ELL 348 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 100
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.56 E-value=2.5e-07 Score=56.14 Aligned_cols=75 Identities=17% Similarity=0.154 Sum_probs=59.7
Q ss_pred cccccCCCHHHHHHHHHH-HHHhCCH--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553 2 VLDCDCHNVKALYRRAQV-YMEIADL--ILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK 77 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a-~~~lg~~--~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~ 77 (91)
+++++|+++.+++.+|.+ +...|++ ++|+..|+++++++|++..+...+..+....+...++. ..+.+.+...+.
T Consensus 70 al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~ 147 (177)
T 2e2e_A 70 ALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAI-ELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTCCT
T ss_pred HHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHH-HHHHHHHhhCCC
Confidence 567788888899999988 7788888 89999999999999988888888888888877777664 356666665544
No 101
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.56 E-value=1.3e-07 Score=62.50 Aligned_cols=87 Identities=20% Similarity=0.123 Sum_probs=52.4
Q ss_pred cccccCCCHHHHHHHHHHHHH-------hCCH-------HHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYME-------IADL-------ILAELDIKKAIE-ADPQNREVKLLQKSLKQLQAESNKRDAK 66 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~-------lg~~-------~~A~~~~~~al~-l~p~~~~~~~~l~~~~~~~~~~~~~~~~ 66 (91)
+|..+|.++.+|+..|..+.. +|++ ++|+..|++|++ ++|++..++..+..+....+...++ ..
T Consensus 42 al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A-~~ 120 (308)
T 2ond_A 42 CLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV-HS 120 (308)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHH-HH
T ss_pred HHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHH-HH
Confidence 455667777777777766653 3664 677777777777 5777766666666666665555544 33
Q ss_pred HHHHhhhcccCCch-hhhhhhhcc
Q 034553 67 FYANMFARVTKDSS-VATKVGYFA 89 (91)
Q Consensus 67 ~~~~mf~~~~~~~~-~~~~~g~f~ 89 (91)
.|.+.....+.... +...+|.|+
T Consensus 121 ~~~~al~~~p~~~~~~~~~~~~~~ 144 (308)
T 2ond_A 121 IYNRLLAIEDIDPTLVYIQYMKFA 144 (308)
T ss_dssp HHHHHHTSSSSCTHHHHHHHHHHH
T ss_pred HHHHHHhccccCccHHHHHHHHHH
Confidence 55666655444333 455555443
No 102
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.55 E-value=5.3e-08 Score=65.85 Aligned_cols=75 Identities=7% Similarity=0.025 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhh
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVG 86 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~g 86 (91)
.+|+.+|.++..+|+|++|+..|+++++++|++..+...+..+...+++..++.. .+.+.+...+....+...++
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~-~l~~al~l~p~~~~a~~~L~ 305 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARD-DFRKAQKYAPDDKAIRRELR 305 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH-HHHHTTC-------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHCCCCHHHHHHHH
Confidence 4999999999999999999999999999999999999999999999988888743 57777766655555554444
No 103
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.55 E-value=2.4e-07 Score=60.11 Aligned_cols=74 Identities=9% Similarity=-0.038 Sum_probs=38.1
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK 77 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~ 77 (91)
++++|.++.+|+.+|.++..+|++++|+..|++++++.|++..+...+..+....+...++. ..+.+.....+.
T Consensus 118 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~al~~~~~ 191 (330)
T 3hym_B 118 TTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE-RFFSQALSIAPE 191 (330)
T ss_dssp HTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH-HHHHHHHTTCTT
T ss_pred HHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHhCCC
Confidence 44555555555555555555555555555555555555555555555555544444444432 234444444333
No 104
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.55 E-value=2.7e-07 Score=60.31 Aligned_cols=74 Identities=22% Similarity=0.268 Sum_probs=64.3
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT 76 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~ 76 (91)
+++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.++....+
T Consensus 29 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~ 102 (359)
T 3ieg_A 29 AVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAE-DDFKKVLKSNP 102 (359)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHTSCC
T ss_pred HHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHH-HHHHHHHhcCC
Confidence 567899999999999999999999999999999999999999999999999988888887764 35666666544
No 105
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.55 E-value=1.4e-07 Score=53.52 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=49.9
Q ss_pred cccccCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHN-------VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES 60 (91)
Q Consensus 2 al~~~p~~-------~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 60 (91)
+++++|.+ +.+++.+|.++..+|++++|+..|++++++.| +..+...+..+...+++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred HHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 45566666 99999999999999999999999999999999 688888888887776654
No 106
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.54 E-value=2.8e-07 Score=52.42 Aligned_cols=57 Identities=16% Similarity=0.026 Sum_probs=46.0
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQ--NREVKLLQKSLKQLQA 58 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~--~~~~~~~l~~~~~~~~ 58 (91)
+++++|+++.+|+.+|.++..+|++++|+..|+++++++|+ +..+...+..+...++
T Consensus 45 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 45 ALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhc
Confidence 57889999999999999999999999999999999999885 4444444444443333
No 107
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.54 E-value=8.7e-07 Score=49.62 Aligned_cols=81 Identities=21% Similarity=0.212 Sum_probs=61.2
Q ss_pred ccCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhh
Q 034553 5 CDCHN-VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVAT 83 (91)
Q Consensus 5 ~~p~~-~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~ 83 (91)
.+|.+ +.+++..|.++...|++++|+..|++++.++|++..+...+..+....++..++. ..+.++....+....+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~ 81 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI-EYYQKALELDPNNAEAWY 81 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHHH
T ss_pred CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhCCccHHHHH
Confidence 56766 8899999999999999999999999999999999999888888888777776663 356666665444433333
Q ss_pred hhh
Q 034553 84 KVG 86 (91)
Q Consensus 84 ~~g 86 (91)
.+|
T Consensus 82 ~la 84 (125)
T 1na0_A 82 NLG 84 (125)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 108
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.53 E-value=7.7e-07 Score=51.74 Aligned_cols=75 Identities=12% Similarity=0.062 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhh
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVG 86 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~g 86 (91)
..++.+|.+++..|++++|+..|+++++++|++..++..+..+....++..++. ..+++.....+........+|
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~-~~~~~al~l~P~~~~~~~~la 92 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAI-IALNHARMLDPKDIAVHAALA 92 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHH
Confidence 358999999999999999999999999999999999999999999998888775 457777777666555554444
No 109
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.52 E-value=2.2e-07 Score=58.32 Aligned_cols=83 Identities=6% Similarity=-0.079 Sum_probs=67.9
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhh
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVA 82 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~ 82 (91)
+..+|.++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.+.....+......
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~al~~~~~~~~~~ 210 (258)
T 3uq3_A 132 AYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAI-ADCNKAIEKDPNFVRAY 210 (258)
T ss_dssp HHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHH
T ss_pred HHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhCHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999988888877764 35666666655444444
Q ss_pred hhhh
Q 034553 83 TKVG 86 (91)
Q Consensus 83 ~~~g 86 (91)
...|
T Consensus 211 ~~l~ 214 (258)
T 3uq3_A 211 IRKA 214 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 110
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.52 E-value=5.5e-07 Score=53.64 Aligned_cols=61 Identities=21% Similarity=0.129 Sum_probs=36.6
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
++.+|.++.+++.+|.++...|++++|+..+++++.++|++..+...+..+....+...++
T Consensus 69 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 129 (186)
T 3as5_A 69 LADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEA 129 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHH
Confidence 4455666666666666666666666666666666666666666555555555555444443
No 111
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.52 E-value=4.2e-07 Score=60.09 Aligned_cols=85 Identities=8% Similarity=-0.051 Sum_probs=70.9
Q ss_pred cccccCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc
Q 034553 2 VLDCDCH--NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDS 79 (91)
Q Consensus 2 al~~~p~--~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~ 79 (91)
+++++|+ ++.+++.+|.++...|++++|+..|+++++++|++..+...+..+....++..++. ..+.++....+...
T Consensus 207 a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~~~~~ 285 (368)
T 1fch_A 207 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV-AAYRRALELQPGYI 285 (368)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCH
T ss_pred HHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCcH
Confidence 4677898 89999999999999999999999999999999999999999999998888887764 45777776655555
Q ss_pred hhhhhhhh
Q 034553 80 SVATKVGY 87 (91)
Q Consensus 80 ~~~~~~g~ 87 (91)
.....+|.
T Consensus 286 ~~~~~l~~ 293 (368)
T 1fch_A 286 RSRYNLGI 293 (368)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 112
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.51 E-value=1.3e-06 Score=55.97 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=51.7
Q ss_pred cccccCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHH--------HHHHHHHHHHH
Q 034553 2 VLDCDCHN---VKALYRRAQVYMEIADLILAELDIKKAIEADPQNR---EVKLLQKSLKQL--------QAESNKRDAKF 67 (91)
Q Consensus 2 al~~~p~~---~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~--------~~~~~~~~~~~ 67 (91)
+++.+|++ +.+++.+|.+++.+|++++|+..|++++++.|+++ .+...+..+... .+...++. ..
T Consensus 41 ~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~-~~ 119 (261)
T 3qky_A 41 VFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAI-EA 119 (261)
T ss_dssp HGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHH-HH
T ss_pred HHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHH-HH
Confidence 46677777 78888888888888888888888888888877553 455566666655 55655553 34
Q ss_pred HHHhhhcccC
Q 034553 68 YANMFARVTK 77 (91)
Q Consensus 68 ~~~mf~~~~~ 77 (91)
+.++....+.
T Consensus 120 ~~~~l~~~p~ 129 (261)
T 3qky_A 120 FQLFIDRYPN 129 (261)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHHHCcC
Confidence 5666555544
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.51 E-value=4.5e-07 Score=61.35 Aligned_cols=88 Identities=9% Similarity=0.022 Sum_probs=73.6
Q ss_pred cccccCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIA--DLILAELDIKKAIEADPQNREVKLLQKSLKQLQAE------SNKRDAKFYANMFA 73 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg--~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~mf~ 73 (91)
+|.++|++..+|+.|+.++..++ .+++++..+..++.++|++..++...+.+-..+.. .-+.+...+.+++.
T Consensus 59 ~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~ 138 (306)
T 3dra_A 59 GINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS 138 (306)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHH
T ss_pred HHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH
Confidence 68899999999999999999999 99999999999999999999999988888743322 12345678899999
Q ss_pred cccCCchhhhhhhhcc
Q 034553 74 RVTKDSSVATKVGYFA 89 (91)
Q Consensus 74 ~~~~~~~~~~~~g~f~ 89 (91)
..++.+++=++.||.+
T Consensus 139 ~~pkny~aW~~R~~vl 154 (306)
T 3dra_A 139 SDPKNHHVWSYRKWLV 154 (306)
T ss_dssp HCTTCHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHH
Confidence 8888888777776643
No 114
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.51 E-value=2.7e-07 Score=58.62 Aligned_cols=81 Identities=16% Similarity=0.141 Sum_probs=68.3
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhh
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKV 85 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~ 85 (91)
+|.++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....+...++. ..+.+.....+....+...+
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~al~~~~~~~~~~~~l 117 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY-EAFDSVLELDPTYNYAHLNR 117 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCTHHHHHH
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH-HHHHHHHhcCccccHHHHHH
Confidence 46789999999999999999999999999999999999999999999998888887764 46777777666555555555
Q ss_pred hh
Q 034553 86 GY 87 (91)
Q Consensus 86 g~ 87 (91)
|.
T Consensus 118 a~ 119 (275)
T 1xnf_A 118 GI 119 (275)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 115
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.50 E-value=3.6e-07 Score=63.24 Aligned_cols=64 Identities=16% Similarity=0.104 Sum_probs=58.7
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDA 65 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 65 (91)
+++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++..
T Consensus 51 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 114 (537)
T 3fp2_A 51 AIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMF 114 (537)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 5788999999999999999999999999999999999999999999999999888887776643
No 116
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.49 E-value=6e-07 Score=56.06 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=33.9
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
++++|.+..+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++
T Consensus 84 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 84 LELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH
Confidence 3445555555555666666666666666666666665555555555555555444444443
No 117
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.49 E-value=2.6e-07 Score=60.92 Aligned_cols=62 Identities=5% Similarity=-0.094 Sum_probs=54.8
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN--REVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~--~~~~~~l~~~~~~~~~~~~~ 63 (91)
+++++|+++.+++.+|.++...|++++|+..|.++++++|++ ..++..+..+...++...+.
T Consensus 211 al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 211 QVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred HHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 467899999999999999999999999999999999999998 78888888888887765554
No 118
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.48 E-value=6.1e-07 Score=53.82 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAE 59 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 59 (91)
...+++|.+|.+++++|+|+.|+..++.+|+++|+|..+......++.++..
T Consensus 72 ~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k 123 (126)
T 1nzn_A 72 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 123 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999999999999999998888876643
No 119
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.48 E-value=1.3e-06 Score=57.39 Aligned_cols=80 Identities=9% Similarity=-0.085 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhh
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATKVG 86 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~~g 86 (91)
|.++.+++.+|.+++..|+|++|+..|+++++++|++..+...+..+....++..++.. .+.+.....+........+|
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALA-DCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHTTSCTTCHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHH-HHHHHHHhCCCCHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999988888754 57777777665555555555
Q ss_pred h
Q 034553 87 Y 87 (91)
Q Consensus 87 ~ 87 (91)
.
T Consensus 80 ~ 80 (281)
T 2c2l_A 80 Q 80 (281)
T ss_dssp H
T ss_pred H
Confidence 3
No 120
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.48 E-value=3.7e-07 Score=64.48 Aligned_cols=56 Identities=20% Similarity=0.392 Sum_probs=51.2
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQ 57 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~ 57 (91)
|++++|+++.+|+++|.++..+|++++|+..|+++++++|++..+...+..+....
T Consensus 66 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~ 121 (477)
T 1wao_1 66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 121 (477)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999998888888774443
No 121
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.46 E-value=1e-06 Score=58.15 Aligned_cols=72 Identities=4% Similarity=-0.052 Sum_probs=58.3
Q ss_pred ccc-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 2 VLD-CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE-VKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 2 al~-~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
||+ ++|++..+|+..|.++..+|++++|+..|+++++++|.+.. +...+..+....+...++ ...+.+....
T Consensus 90 Al~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~a~~~ 163 (308)
T 2ond_A 90 AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSG-RMIFKKARED 163 (308)
T ss_dssp HHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHH-HHHHHHHHTS
T ss_pred HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHH-HHHHHHHHhc
Confidence 567 79999999999999999999999999999999999999876 788887777766666554 3345555544
No 122
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.45 E-value=9.2e-07 Score=54.37 Aligned_cols=70 Identities=17% Similarity=0.173 Sum_probs=41.8
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhh
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQ-AESNKRDAKFYANMFA 73 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~mf~ 73 (91)
++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+.... +...++. ..+.++..
T Consensus 35 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~-~~~~~~~~ 105 (225)
T 2vq2_A 35 LKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESM-AYFDKALA 105 (225)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHH-HHHHHHHT
T ss_pred HHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHH-HHHHHHHc
Confidence 4556666666666666666666666666666666666666666666666555555 5544442 23444444
No 123
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.45 E-value=5.4e-07 Score=55.43 Aligned_cols=82 Identities=17% Similarity=0.222 Sum_probs=56.2
Q ss_pred ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhh
Q 034553 5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSVATK 84 (91)
Q Consensus 5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~ 84 (91)
.+|+++.+++.+|.++...|++++|+..|+++++++|++..+...+..+....+...++. ..+.++....+....+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~a~~~~~~~~~~~~~ 81 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQ-ESFRQALSIKPDSAEINNN 81 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHH-HHHHHHHHhCCCChHHHHH
Confidence 457777888888888888888888888888888888888777777777777666666553 3456655555444444444
Q ss_pred hhh
Q 034553 85 VGY 87 (91)
Q Consensus 85 ~g~ 87 (91)
+|.
T Consensus 82 l~~ 84 (225)
T 2vq2_A 82 YGW 84 (225)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 124
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.45 E-value=7.5e-07 Score=56.20 Aligned_cols=71 Identities=18% Similarity=0.097 Sum_probs=55.2
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFA 73 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~ 73 (91)
+++++|.++.+++.+|.++...|++++|+..|+++++++|++..+...+..+....+...++. ..+.++..
T Consensus 63 al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~~~~ 133 (252)
T 2ho1_A 63 ALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAY-QRLLEASQ 133 (252)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHTT
T ss_pred HHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHH-HHHHHHHh
Confidence 456788888888888888888888888888888888888888888888777777766666653 34555555
No 125
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.45 E-value=6.7e-07 Score=60.69 Aligned_cols=74 Identities=22% Similarity=0.275 Sum_probs=54.5
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT 76 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~ 76 (91)
+++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....+...++. ..+.++....+
T Consensus 52 ~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~ 125 (450)
T 2y4t_A 52 AVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAE-DDFKKVLKSNP 125 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTSCC
T ss_pred HHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCC
Confidence 456678888888888888888888888888888888888888877777777777777666653 34566665543
No 126
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.44 E-value=5.4e-07 Score=58.41 Aligned_cols=79 Identities=10% Similarity=-0.004 Sum_probs=61.8
Q ss_pred cccccCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIA-DLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS 80 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg-~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~ 80 (91)
+++.+|+++.+++.+|.++..+| ++++|+..|+++++++|++..+...+..+....+...++. ..+.+.....+....
T Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~a~~~~~~~~~ 160 (330)
T 3hym_B 82 LVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAM-AAYFTAAQLMKGCHL 160 (330)
T ss_dssp HHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHTTTCSH
T ss_pred HHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhccccHH
Confidence 46678889999999999999999 8999999999999999998888888888888877777663 356666655544333
Q ss_pred h
Q 034553 81 V 81 (91)
Q Consensus 81 ~ 81 (91)
.
T Consensus 161 ~ 161 (330)
T 3hym_B 161 P 161 (330)
T ss_dssp H
T ss_pred H
Confidence 3
No 127
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.44 E-value=5.9e-07 Score=58.16 Aligned_cols=73 Identities=5% Similarity=-0.082 Sum_probs=46.0
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARV 75 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~ 75 (91)
+++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++.. .+.++....
T Consensus 198 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~a~~~~ 270 (327)
T 3cv0_A 198 AVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAK-QLVRAIYMQ 270 (327)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHH-HHHHHHHhC
Confidence 3455666777777777777777777777777777777777766666666666666655555432 344444443
No 128
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.43 E-value=6.3e-07 Score=61.98 Aligned_cols=84 Identities=20% Similarity=0.236 Sum_probs=53.1
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
+++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.++....+....+
T Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~ 380 (537)
T 3fp2_A 302 AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESE-AFFNETKLKFPTLPEV 380 (537)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCTHH
T ss_pred HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCChHH
Confidence 345667777777777777777777777777777777777777666666666666666655553 3455555554444444
Q ss_pred hhhhh
Q 034553 82 ATKVG 86 (91)
Q Consensus 82 ~~~~g 86 (91)
...+|
T Consensus 381 ~~~l~ 385 (537)
T 3fp2_A 381 PTFFA 385 (537)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 129
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.43 E-value=1e-06 Score=57.02 Aligned_cols=85 Identities=9% Similarity=0.053 Sum_probs=69.7
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
+++.+|.++.+++.+|.++..+|++++|+..++++++++|++..+...+..+....+...++. ..+.++....+.....
T Consensus 164 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~a~~~~~~~~~~ 242 (327)
T 3cv0_A 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL-DAYNRALDINPGYVRV 242 (327)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHH
T ss_pred HHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCCHHH
Confidence 467789999999999999999999999999999999999999999999999888888777764 3567776665554444
Q ss_pred hhhhhh
Q 034553 82 ATKVGY 87 (91)
Q Consensus 82 ~~~~g~ 87 (91)
...+|.
T Consensus 243 ~~~l~~ 248 (327)
T 3cv0_A 243 MYNMAV 248 (327)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 130
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.42 E-value=3e-06 Score=52.29 Aligned_cols=68 Identities=9% Similarity=0.068 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK 77 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~ 77 (91)
++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++.. .+.+.....++
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~-~~~~al~~~~~ 103 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK-DLKEALIQLRG 103 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTTTT
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHH-HHHHHHHhCCC
Confidence 789999999999999999999999999999999999999999999999888887743 57777765544
No 131
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.42 E-value=8.7e-07 Score=60.13 Aligned_cols=85 Identities=11% Similarity=0.033 Sum_probs=67.4
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
++..+|.++.+++.+|.+++..|++++|+..|+++++++|++..+...+..+....+...++. ..+.++....+.....
T Consensus 18 ~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~p~~~~~ 96 (450)
T 2y4t_A 18 LYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAAL-PDLTKVIQLKMDFTAA 96 (450)
T ss_dssp -----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHH
T ss_pred cccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHH-HHHHHHHhcCCCcHHH
Confidence 567899999999999999999999999999999999999999999999999988888887764 4577777765555445
Q ss_pred hhhhhh
Q 034553 82 ATKVGY 87 (91)
Q Consensus 82 ~~~~g~ 87 (91)
...+|.
T Consensus 97 ~~~l~~ 102 (450)
T 2y4t_A 97 RLQRGH 102 (450)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 132
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.40 E-value=2.2e-06 Score=54.89 Aligned_cols=74 Identities=8% Similarity=-0.037 Sum_probs=63.1
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN---REVKLLQKSLKQLQAESNKRDAKFYANMFARVTK 77 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~ 77 (91)
.+++|.++.++|.+|.+++..|+|++|+..|+++++.+|++ ..+...+..+....++..++. ..+.++....+.
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~-~~~~~~l~~~p~ 84 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAA-SEYERFIQIYQI 84 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHH-HHHHHHHHHCCC
Confidence 45789999999999999999999999999999999999999 789999999999988888874 457777776543
No 133
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.37 E-value=1.6e-06 Score=48.90 Aligned_cols=72 Identities=21% Similarity=0.229 Sum_probs=59.6
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
+++.+|.++.+++..|.++...|++++|+..+++++.+.|++..+...+..+....++..++. ..+..+...
T Consensus 61 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~ 132 (136)
T 2fo7_A 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI-EYYQKALEL 132 (136)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHH
T ss_pred HHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHH-HHHHHHHcc
Confidence 456789999999999999999999999999999999999999988888888877776666653 345555443
No 134
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.37 E-value=1.9e-06 Score=59.05 Aligned_cols=73 Identities=15% Similarity=0.040 Sum_probs=62.7
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT 76 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~ 76 (91)
+++.+| ++.+|+.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.++....+
T Consensus 32 al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~ 104 (514)
T 2gw1_A 32 ALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAM-FDLSVLSLNGD 104 (514)
T ss_dssp HHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHSSS
T ss_pred HHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcCC
Confidence 567788 69999999999999999999999999999999999999999999999888888774 35667665543
No 135
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.36 E-value=1.2e-06 Score=60.36 Aligned_cols=87 Identities=6% Similarity=-0.020 Sum_probs=73.7
Q ss_pred cccccCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcccCCc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIA-DLILAELDIKKAIEADPQNREVKLLQKSLKQLQ-AESNKRDAKFYANMFARVTKDS 79 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg-~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~mf~~~~~~~ 79 (91)
+|.++|++..+|+.|+.++..++ .+++++..+..++..+|++..++.-.+.+-..+ ...-..+...+.+++...+..+
T Consensus 80 ~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy 159 (349)
T 3q7a_A 80 IVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNY 159 (349)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCH
T ss_pred HHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCH
Confidence 68899999999999999999999 599999999999999999999999998888877 4122345678899998888777
Q ss_pred hhhhhhhhc
Q 034553 80 SVATKVGYF 88 (91)
Q Consensus 80 ~~~~~~g~f 88 (91)
+.=+..+|.
T Consensus 160 ~AW~~R~wv 168 (349)
T 3q7a_A 160 HTWAYLHWL 168 (349)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666654
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.35 E-value=1.8e-06 Score=62.44 Aligned_cols=54 Identities=17% Similarity=-0.009 Sum_probs=27.9
Q ss_pred ccccCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 034553 3 LDCDCHNVKALYRRAQVYMEIA-DLILAELDIKKAIEADPQNREVKLLQKSLKQL 56 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg-~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~ 56 (91)
|++||.|..||..|+.+...+| .++++++.+.++++++|+|..++..+..+-..
T Consensus 136 l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 136 LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred HhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence 4445555555555555555555 45555555555555555555555555444444
No 137
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.34 E-value=3.8e-06 Score=50.76 Aligned_cols=54 Identities=13% Similarity=0.186 Sum_probs=48.9
Q ss_pred cC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 034553 6 DC-HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAE 59 (91)
Q Consensus 6 ~p-~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 59 (91)
+| ...+.+|.+|.+++++|+|+.|+..++.+|+++|+|..+......++.++..
T Consensus 73 ~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~ki~k 127 (134)
T 3o48_A 73 AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQK 127 (134)
T ss_dssp CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh
Confidence 45 4578899999999999999999999999999999999999998888887764
No 138
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.32 E-value=5.6e-06 Score=47.07 Aligned_cols=52 Identities=25% Similarity=0.179 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQA 58 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~ 58 (91)
+..+..+...|.+++.+|+++.|+..++++++++|++..+...+.-++..+.
T Consensus 43 ~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~~~~~~~ 94 (104)
T 2v5f_A 43 IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIMA 94 (104)
T ss_dssp SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHHHH
Confidence 4567889999999999999999999999999999999998888776665443
No 139
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.32 E-value=1.6e-06 Score=60.86 Aligned_cols=58 Identities=12% Similarity=0.048 Sum_probs=26.0
Q ss_pred ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553 5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 62 (91)
.+|+++.+++.+|.++...|++++|+..|+++++++|++..+...+..+....+...+
T Consensus 368 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 425 (597)
T 2xpi_A 368 RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQ 425 (597)
T ss_dssp HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3444444444444444444444444444444444444444444444444444333333
No 140
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.31 E-value=8e-06 Score=44.88 Aligned_cols=67 Identities=9% Similarity=0.117 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch
Q 034553 13 LYRRAQVYMEIADLILAELDIKKAIEADPQNRE-VKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS 80 (91)
Q Consensus 13 ~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~ 80 (91)
.+.+|.+++..|++++|+..|+++++++|++.. +...+..+....++..++. ..+.+.....+....
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~-~~~~~al~~~p~~~~ 70 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKAL-NNYQSAIELNPDSPA 70 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCTTSTH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCcHH
Confidence 477899999999999999999999999999999 9999999999888887764 456777766554433
No 141
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.31 E-value=1.5e-06 Score=62.86 Aligned_cols=86 Identities=9% Similarity=0.045 Sum_probs=56.2
Q ss_pred cccccCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIAD----------LILAELDIKKAIEADPQNREVKLLQKSLKQLQAES-NKRDAKFYAN 70 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~----------~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~ 70 (91)
+|.++|++..+|+.|+.++..+|+ +++|+..++++++.+|++..++.-..-+-..+... -+.+-..+.+
T Consensus 55 ~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k 134 (567)
T 1dce_A 55 ILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCAR 134 (567)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 466777777777777777777777 77777777777777777777777666666655521 1223456666
Q ss_pred hhhcccCCchhhhhhhh
Q 034553 71 MFARVTKDSSVATKVGY 87 (91)
Q Consensus 71 mf~~~~~~~~~~~~~g~ 87 (91)
+++..+..++.-+..||
T Consensus 135 ~l~~d~~N~~aW~~R~~ 151 (567)
T 1dce_A 135 FLEADERNFHCWDYRRF 151 (567)
T ss_dssp HHHHCTTCHHHHHHHHH
T ss_pred HHhhccccccHHHHHHH
Confidence 66666665555555544
No 142
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.31 E-value=6.2e-07 Score=59.06 Aligned_cols=34 Identities=12% Similarity=-0.047 Sum_probs=18.4
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKK 35 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~ 35 (91)
+++++|+++.+++.+|.++..+|++++|+..|++
T Consensus 143 al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~ 176 (287)
T 3qou_A 143 AWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXT 176 (287)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3455555666666666655555555555444333
No 143
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.29 E-value=3.9e-06 Score=52.83 Aligned_cols=69 Identities=12% Similarity=0.067 Sum_probs=41.6
Q ss_pred ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
.+|.++.+++.+|.++..+|++++|+..|+++++++|.+..+...+..+....++..++. ..+.++...
T Consensus 136 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~~~~~ 204 (252)
T 2ho1_A 136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR-QYYDLFAQG 204 (252)
T ss_dssp TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTT
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHh
Confidence 456666666666666666666666666666666666666666666666655555554442 234444443
No 144
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.25 E-value=5.4e-06 Score=50.66 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=47.1
Q ss_pred cC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q 034553 6 DC-HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQA 58 (91)
Q Consensus 6 ~p-~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~ 58 (91)
+| ...+.+|.+|.+++++|+|+.|...++.+|+++|+|..+......++.++.
T Consensus 72 ~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~Ie~~i~ 125 (144)
T 1y8m_A 72 AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQ 125 (144)
T ss_dssp CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 44 467889999999999999999999999999999999999988888876653
No 145
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.25 E-value=8.6e-07 Score=56.41 Aligned_cols=67 Identities=10% Similarity=0.004 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK 77 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~ 77 (91)
..+|+.+|.++..+|++++|+..|+++++++|++..+...+..+....++..++. ..+.+.....+.
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~al~~~~~ 140 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAI-QYMEKQIRPTTT 140 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHH-HHHGGGCCSSCC
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHH-HHHHHHhhcCCC
Confidence 4446666666666666666666666666666666666666666665555555442 234444444333
No 146
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.25 E-value=5.3e-06 Score=52.43 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=43.2
Q ss_pred cccccCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHH
Q 034553 2 VLDCDCHN---VKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE---VKLLQKSLKQ 55 (91)
Q Consensus 2 al~~~p~~---~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~---~~~~l~~~~~ 55 (91)
+++.+|++ ..+++.+|.+++.+|++++|+..|+++++++|++.. +.-.+..+..
T Consensus 30 ~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~ 89 (225)
T 2yhc_A 30 LDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNM 89 (225)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHH
Confidence 35566765 489999999999999999999999999999999864 4444555443
No 147
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.24 E-value=6.5e-06 Score=57.78 Aligned_cols=87 Identities=11% Similarity=-0.039 Sum_probs=71.8
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
+++++|.++.+|+.+|.++...|++++|+..|++++++.|++..+...+..+....+...++. ..+.+|....+....+
T Consensus 399 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~ 477 (597)
T 2xpi_A 399 SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN-EYLQSSYALFQYDPLL 477 (597)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCCCCHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCChHH
Confidence 456789999999999999999999999999999999999999999888888888888877764 4678888776665566
Q ss_pred hhhhhhcc
Q 034553 82 ATKVGYFA 89 (91)
Q Consensus 82 ~~~~g~f~ 89 (91)
.+.+|...
T Consensus 478 ~~~l~~~~ 485 (597)
T 2xpi_A 478 LNELGVVA 485 (597)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666543
No 148
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.21 E-value=1.4e-05 Score=54.72 Aligned_cols=56 Identities=16% Similarity=-0.033 Sum_probs=39.3
Q ss_pred cccccCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIAD-LILAELDIKKAIEADPQNREVKLLQKSLKQLQ 57 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~-~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~ 57 (91)
+|++||.|..||..|+.+...+|. ++++++.+.++++.+|+|..++..+..+-..+
T Consensus 136 ~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 136 FLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 456677777777777777777776 57777777777777777777776666665555
No 149
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.19 E-value=6.6e-06 Score=56.29 Aligned_cols=86 Identities=12% Similarity=0.038 Sum_probs=69.3
Q ss_pred cccccCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIA--DLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDS 79 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg--~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~ 79 (91)
+|..+|.+..+|+.|+.++..++ .+++++..+.++++++|.|..++....-+-...+..-+.+-+.+.++....+...
T Consensus 100 ~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~ 179 (331)
T 3dss_A 100 CLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY 179 (331)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCH
T ss_pred HHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCH
Confidence 57789999999999999999999 4999999999999999999999988888877766533345667777777766666
Q ss_pred hhhhhhhh
Q 034553 80 SVATKVGY 87 (91)
Q Consensus 80 ~~~~~~g~ 87 (91)
+.-+..|+
T Consensus 180 SAW~~R~~ 187 (331)
T 3dss_A 180 SSWHYRSC 187 (331)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 150
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.16 E-value=1.2e-05 Score=51.10 Aligned_cols=82 Identities=16% Similarity=0.101 Sum_probs=41.1
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR----EVKLLQKSLKQLQAESNKRDAKFYANMFARVTK 77 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~ 77 (91)
+++++|+++.+++.+|.++..+|++++|+..|+++++ .|.+. .+...+..+....++..++. ..+.+.....+.
T Consensus 29 ~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~-~~~~~a~~~~~~ 106 (272)
T 3u4t_A 29 LEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAI-QQYQAAVDRDTT 106 (272)
T ss_dssp HHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSTT
T ss_pred HHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHH-HHHHHHHhcCcc
Confidence 3455566666666666666666666666666666665 33322 22445555555555544442 234444444443
Q ss_pred Cchhhhhh
Q 034553 78 DSSVATKV 85 (91)
Q Consensus 78 ~~~~~~~~ 85 (91)
...+...+
T Consensus 107 ~~~~~~~l 114 (272)
T 3u4t_A 107 RLDMYGQI 114 (272)
T ss_dssp CTHHHHHH
T ss_pred cHHHHHHH
Confidence 33333333
No 151
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.16 E-value=2.4e-05 Score=53.48 Aligned_cols=54 Identities=20% Similarity=0.062 Sum_probs=49.2
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQ 55 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~ 55 (91)
++.++|.++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+..
T Consensus 239 al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 239 ALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR 292 (472)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999998888776644
No 152
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.12 E-value=6.6e-06 Score=55.60 Aligned_cols=85 Identities=12% Similarity=0.018 Sum_probs=60.4
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhhc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLI--LAELDIKKAIEADPQNREVKLLQKSLKQLQAE-----SNKRDAKFYANMFAR 74 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~--~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~mf~~ 74 (91)
+|+.+|.|..+|+.|+.++..+|.++ ++++.+.++++++|.|..++.....+-..+.. .-+.+-+.+.++...
T Consensus 136 ~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~ 215 (306)
T 3dra_A 136 MLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK 215 (306)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh
Confidence 56788999999999999998898888 89999999999999988888877766655543 122334455665555
Q ss_pred ccCCchhhhhhh
Q 034553 75 VTKDSSVATKVG 86 (91)
Q Consensus 75 ~~~~~~~~~~~g 86 (91)
.+...+.=+..+
T Consensus 216 ~p~n~SaW~y~~ 227 (306)
T 3dra_A 216 CPQNPSTWNYLL 227 (306)
T ss_dssp CSSCHHHHHHHH
T ss_pred CCCCccHHHHHH
Confidence 555444444333
No 153
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.12 E-value=1e-05 Score=55.81 Aligned_cols=87 Identities=13% Similarity=0.046 Sum_probs=72.5
Q ss_pred cccccCCCHHHHHHHHHHHHHh-C-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhh
Q 034553 2 VLDCDCHNVKALYRRAQVYMEI-A-DLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESN-------KRDAKFYANMF 72 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~l-g-~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~mf 72 (91)
+|..+|.+..+|+.|+.++..+ + ++++++..+.++++++|.|..++.-.+-+-..++... ..+-+.+.++.
T Consensus 115 ~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I 194 (349)
T 3q7a_A 115 FAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEML 194 (349)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHH
Confidence 5788999999999999999999 8 9999999999999999999999998888888777665 35567788888
Q ss_pred hcccCCchhhhhhhhc
Q 034553 73 ARVTKDSSVATKVGYF 88 (91)
Q Consensus 73 ~~~~~~~~~~~~~g~f 88 (91)
.......+.=+..|+.
T Consensus 195 ~~dp~N~SAW~~R~~l 210 (349)
T 3q7a_A 195 RVDGRNNSAWGWRWYL 210 (349)
T ss_dssp HHCTTCHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHH
Confidence 8776666665555543
No 154
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.10 E-value=2.7e-06 Score=58.31 Aligned_cols=59 Identities=15% Similarity=0.048 Sum_probs=27.1
Q ss_pred cccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553 4 DCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 4 ~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 62 (91)
+++|.++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+....+...+
T Consensus 332 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 332 ELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHH
Confidence 34444444444444444444444444444444444444444444444444444444333
No 155
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.06 E-value=5.6e-05 Score=49.90 Aligned_cols=80 Identities=14% Similarity=0.151 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcccCCchhhhh
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQK--SLKQLQAESNKRDAKFYANMFARVTKDSSVATK 84 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~~~~ 84 (91)
|+++.+++.+|.++..+|++++|+..|+++++++|++........ .+....+...++. ..+.++....+......++
T Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~-~~~~~~l~~~p~~~~~~~~ 205 (291)
T 3mkr_A 127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAY-YIFQEMADKCSPTLLLLNG 205 (291)
T ss_dssp CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHH-HHHHHHHHHSCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHH-HHHHHHHHhCCCcHHHHHH
Confidence 677778888888888888888888888888888887653222111 1111112333332 3455555555544444444
Q ss_pred hhh
Q 034553 85 VGY 87 (91)
Q Consensus 85 ~g~ 87 (91)
.|.
T Consensus 206 la~ 208 (291)
T 3mkr_A 206 QAA 208 (291)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 156
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.05 E-value=1.9e-05 Score=49.87 Aligned_cols=72 Identities=11% Similarity=0.102 Sum_probs=57.6
Q ss_pred cccccCCCHHHH-----------------HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKAL-----------------YRRAQVYMEIADLILAELDIKKAIEADPQNR---EVKLLQKSLKQLQAESN 61 (91)
Q Consensus 2 al~~~p~~~ka~-----------------~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~---~~~~~l~~~~~~~~~~~ 61 (91)
+|+.+|+++.++ +.+|.+++..|++++|+..|+++++..|+++ ++...+..+...++...
T Consensus 122 ~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~ 201 (225)
T 2yhc_A 122 LVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNA 201 (225)
T ss_dssp HHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcH
Confidence 467788887655 6789999999999999999999999999986 56777888888888777
Q ss_pred HHHHHHHHHhhhc
Q 034553 62 KRDAKFYANMFAR 74 (91)
Q Consensus 62 ~~~~~~~~~mf~~ 74 (91)
++. ..++.+...
T Consensus 202 ~A~-~~~~~l~~~ 213 (225)
T 2yhc_A 202 QAE-KVAKIIAAN 213 (225)
T ss_dssp HHH-HHHHHHHHC
T ss_pred HHH-HHHHHHHhh
Confidence 764 345655544
No 157
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.02 E-value=7.6e-06 Score=57.57 Aligned_cols=72 Identities=4% Similarity=-0.065 Sum_probs=44.7
Q ss_pred ccc-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 2 VLD-CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR-EVKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 2 al~-~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
|++ ++|++...|+..|..+...|++++|...|+++++++|.+. .+...+..+....+...++ ...+.+....
T Consensus 312 Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~Al~~ 385 (530)
T 2ooe_A 312 AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSG-RMIFKKARED 385 (530)
T ss_dssp HTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTC
T ss_pred HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHH-HHHHHHHHhc
Confidence 444 5677777777777777777777777777777777777664 4566655555555544443 2344444443
No 158
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.97 E-value=7.4e-05 Score=42.29 Aligned_cols=79 Identities=14% Similarity=0.095 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchh
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEAD-------PQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSSV 81 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~-------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~~ 81 (91)
++.-.|..|..++..++|+.|+..|+.|++.. +....+...+..+...++....+. ..+.+.....+....+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~-~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKAL-LLTKKLLELDPEHQRA 82 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHH-HHHHHHHhcCCCCHHH
Confidence 46678999999999999999999999999973 234678888888888888777663 4677777776766667
Q ss_pred hhhhhhc
Q 034553 82 ATKVGYF 88 (91)
Q Consensus 82 ~~~~g~f 88 (91)
.+++++|
T Consensus 83 ~~n~~~~ 89 (104)
T 2v5f_A 83 NGNLKYF 89 (104)
T ss_dssp HHHHHHH
T ss_pred HhhHHHH
Confidence 7777654
No 159
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.94 E-value=0.00012 Score=51.51 Aligned_cols=87 Identities=8% Similarity=-0.002 Sum_probs=63.4
Q ss_pred cccccCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhcccCCc
Q 034553 2 VLDCDCHNV-KALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQ-LQAESNKRDAKFYANMFARVTKDS 79 (91)
Q Consensus 2 al~~~p~~~-ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~mf~~~~~~~ 79 (91)
+|+++|.++ .+|...|..+...|++++|+..|++|++..|.+..+......+.- ..+...++ ...|.+.....+...
T Consensus 347 al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A-~~~~e~al~~~p~~~ 425 (530)
T 2ooe_A 347 LLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA-FKIFELGLKKYGDIP 425 (530)
T ss_dssp HHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHH-HHHHHHHHHHHTTCH
T ss_pred HhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHH-HHHHHHHHHHCCCCH
Confidence 577889885 799999999999999999999999999998887655443333321 12333333 446777777777777
Q ss_pred hhhhhhhhcc
Q 034553 80 SVATKVGYFA 89 (91)
Q Consensus 80 ~~~~~~g~f~ 89 (91)
.+...|+.|.
T Consensus 426 ~~~~~~~~~~ 435 (530)
T 2ooe_A 426 EYVLAYIDYL 435 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777664
No 160
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.89 E-value=3.4e-05 Score=52.73 Aligned_cols=51 Identities=20% Similarity=0.096 Sum_probs=31.9
Q ss_pred cccccCCCHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYM---EIADLILAELDIKKAIEADPQNREVKLLQKS 52 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~---~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~ 52 (91)
||+++|+++.+++..|.+++ ..+++++|+..|+++++++|++..+...+..
T Consensus 164 al~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~ 217 (472)
T 4g1t_A 164 ALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLAL 217 (472)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHH
Confidence 45666777766666666643 3466666666666666666666665555443
No 161
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.73 E-value=3.9e-05 Score=50.31 Aligned_cols=72 Identities=13% Similarity=-0.033 Sum_probs=51.8
Q ss_pred cccccCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 034553 2 VLDCDCHN------VKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE-------VKLLQKSLKQLQAESNKRDAKFY 68 (91)
Q Consensus 2 al~~~p~~------~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~-------~~~~l~~~~~~~~~~~~~~~~~~ 68 (91)
||++.|.. ..++..+|.++..+|+|++|+..|++++++.|++.. +...+..+....++..++.. .+
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~-~~ 222 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR-TL 222 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH-HH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH-HH
Confidence 45555543 578999999999999999999999999999998653 34555666666666655532 45
Q ss_pred HHhhhc
Q 034553 69 ANMFAR 74 (91)
Q Consensus 69 ~~mf~~ 74 (91)
.+....
T Consensus 223 ~~al~l 228 (292)
T 1qqe_A 223 QEGQSE 228 (292)
T ss_dssp HGGGCC
T ss_pred HHHHhh
Confidence 554443
No 162
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.68 E-value=0.00026 Score=45.22 Aligned_cols=49 Identities=14% Similarity=-0.019 Sum_probs=36.3
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQL 56 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~ 56 (91)
+|+++.+++..|.++...|++++|+..|+++++ |++..+...+..+...
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~ 50 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQ 50 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHc
Confidence 577888888888888888888888888888887 6677777777766665
No 163
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.60 E-value=5e-05 Score=47.79 Aligned_cols=68 Identities=19% Similarity=0.175 Sum_probs=55.6
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEA--------DPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
+|....+++.+|.++..+|++++|+..|++++++ +|....+...+..+....++..++.. .+.+....
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~l~~ 198 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET-LYKEILTR 198 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHH
Confidence 5778899999999999999999999999999999 66667788888888888887776643 44554443
No 164
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.53 E-value=0.00029 Score=47.73 Aligned_cols=85 Identities=13% Similarity=0.167 Sum_probs=43.3
Q ss_pred ccCCCHHHHHHHHHHHHH---h--C------CHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHH-----HHHHHHHHH
Q 034553 5 CDCHNVKALYRRAQVYME---I--A------DLILAELDIKKAIEADPQ--NREVKLLQKSLKQLQ-----AESNKRDAK 66 (91)
Q Consensus 5 ~~p~~~ka~~rrg~a~~~---l--g------~~~~A~~~~~~al~l~p~--~~~~~~~l~~~~~~~-----~~~~~~~~~ 66 (91)
.+|+++.++|..|.+... . | ....|+..+++++++||+ +..+...+..+...+ +...++ +.
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA-~~ 225 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKA-HT 225 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHH-HH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHH-HH
Confidence 455556666666555533 1 1 235555556666666665 344555555555443 233332 23
Q ss_pred HHHHhhhcccCC-chhhhhhhhccc
Q 034553 67 FYANMFARVTKD-SSVATKVGYFAC 90 (91)
Q Consensus 67 ~~~~mf~~~~~~-~~~~~~~g~f~~ 90 (91)
.+++.....++. -.++--||.|+|
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~ 250 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALC 250 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHH
Confidence 455555554432 555555666555
No 165
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.51 E-value=0.00011 Score=48.07 Aligned_cols=67 Identities=13% Similarity=0.058 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553 10 VKALYRRAQVYMEI-ADLILAELDIKKAIEADPQN------REVKLLQKSLKQLQAESNKRDAKFYANMFARVTK 77 (91)
Q Consensus 10 ~ka~~rrg~a~~~l-g~~~~A~~~~~~al~l~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~ 77 (91)
..++...|.++... |++++|+..|++++++.|++ ..+...+..+....+++.++. ..+.+.....+.
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~~~ 190 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS-DIYSKLIKSSMG 190 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHhc
Confidence 56899999999995 99999999999999998864 356677777777777777764 356666655433
No 166
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.50 E-value=0.00029 Score=47.22 Aligned_cols=67 Identities=10% Similarity=0.031 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEAD--PQ-NREVKLLQKSLKQLQAESNKRDAKFYANMFARVTK 77 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~--p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~ 77 (91)
..+++.+|.++..+|++++|+..|++++.-. |. ..++...+..+...+++..++ ...++++....+.
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA-~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAA-VALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHH-HHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcCCc
Confidence 3578888888888888888888888887543 55 456777777787777777766 3467777766554
No 167
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.50 E-value=0.00013 Score=49.44 Aligned_cols=54 Identities=6% Similarity=-0.088 Sum_probs=45.6
Q ss_pred CcccccCC--CHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHH
Q 034553 1 MVLDCDCH--NVKALYRRAQVYMEI-----ADLILAELDIKKAIEADPQN-REVKLLQKSLK 54 (91)
Q Consensus 1 ~al~~~p~--~~ka~~rrg~a~~~l-----g~~~~A~~~~~~al~l~p~~-~~~~~~l~~~~ 54 (91)
+||++||+ +.-+|.-+|..|..+ |+.+.|...|++|++++|+. ..+........
T Consensus 188 rAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l 249 (301)
T 3u64_A 188 RACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADAL 249 (301)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHT
T ss_pred HHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 47899999 666999999999996 99999999999999999974 66666655544
No 168
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.44 E-value=8.8e-05 Score=49.69 Aligned_cols=55 Identities=13% Similarity=-0.005 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHHHH
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR----EVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~----~~~~~l~~~~~~~~~~~~ 62 (91)
.....++.+|.+++..|++++|+..|+++++++|++. .+...+..+....++..+
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 104 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNK 104 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHH
Confidence 3445555566666666666666666666666666554 234444444444443333
No 169
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.39 E-value=8.8e-05 Score=46.65 Aligned_cols=67 Identities=19% Similarity=0.123 Sum_probs=52.4
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEA--------DPQNREVKLLQKSLKQLQAESNKRDAKFYANMFA 73 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~ 73 (91)
+|..+.+++.+|.++..+|++++|+..|++++.+ +|....+...+..+....++..++.. .+.+.+.
T Consensus 81 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~ 155 (283)
T 3edt_B 81 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEY-YYRRALE 155 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH-HHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHH
Confidence 4677889999999999999999999999999998 45556777777777777777666533 3444443
No 170
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.36 E-value=0.00019 Score=45.91 Aligned_cols=29 Identities=10% Similarity=0.028 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
.+++.+|.++..+|++++|+..+++++.+
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 72 (338)
T 3ro2_A 44 AIYSQLGNAYFYLHDYAKALEYHHHDLTL 72 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555555555555555555555555554
No 171
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.29 E-value=0.00067 Score=45.35 Aligned_cols=73 Identities=7% Similarity=0.005 Sum_probs=58.5
Q ss_pred cccccCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034553 2 VLDCDCHNV----KALYRRAQVYMEIADLILAELDIKKAIEA------DPQNREVKLLQKSLKQLQAESNKRDAKFYANM 71 (91)
Q Consensus 2 al~~~p~~~----ka~~rrg~a~~~lg~~~~A~~~~~~al~l------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~m 71 (91)
+++++|++. .+|+.+|.++..+|++++|+..|++++++ +|....+...+..+....++..++ ...+.+.
T Consensus 74 al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~a 152 (411)
T 4a1s_A 74 AIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEA-AICCERH 152 (411)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH-HHHHHHH
T ss_pred HHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHH-HHHHHHH
Confidence 567788887 58999999999999999999999999998 455557777777777777766654 5667777
Q ss_pred hhcc
Q 034553 72 FARV 75 (91)
Q Consensus 72 f~~~ 75 (91)
....
T Consensus 153 l~~~ 156 (411)
T 4a1s_A 153 LTLA 156 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 172
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.27 E-value=0.0002 Score=47.43 Aligned_cols=54 Identities=6% Similarity=-0.074 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHHH
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR----EVKLLQKSLKQLQAESN 61 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~----~~~~~l~~~~~~~~~~~ 61 (91)
....+++.+|.+++..|++++|+..|+++++++|++. .+...+..+....++..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 64 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYA 64 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHH
Confidence 3455666666666666666666666666666666663 23444444444443333
No 173
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.25 E-value=0.0028 Score=44.04 Aligned_cols=73 Identities=10% Similarity=-0.032 Sum_probs=60.9
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT 76 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~ 76 (91)
++.++|..+.+|...|.++...|++++|+..+++|+.++|+ ......+..+....++..++. ..+.+.|...+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~-e~~~~AlrL~P 341 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAA-DAYLTAFNLRP 341 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSC
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHH-HHHHHHHhcCC
Confidence 45788999999999999999999999999999999999975 666678888888888888774 45677776644
No 174
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.20 E-value=0.00097 Score=47.61 Aligned_cols=65 Identities=12% Similarity=0.093 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEA-----DPQNR---EVKLLQKSLKQLQAESNKRDAKFYANMF 72 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l-----~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~mf 72 (91)
|+-...++++|.+|..+|+|++|+..|++|+++ -|+++ ++...+..+...++.+++++. +|+++-
T Consensus 390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~-~~~~~~ 462 (490)
T 3n71_A 390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEF-MYHKMR 462 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 445667999999999999999999999999986 46665 555667777777777766654 455543
No 175
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.12 E-value=0.00091 Score=42.62 Aligned_cols=60 Identities=13% Similarity=0.018 Sum_probs=48.9
Q ss_pred ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHH
Q 034553 5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEA--------DPQNREVKLLQKSLKQLQAESNKRD 64 (91)
Q Consensus 5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l--------~p~~~~~~~~l~~~~~~~~~~~~~~ 64 (91)
-+|.++.+++.+|.++...|++++|+..|++++++ +|....+...+..+....++..++.
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 89 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAA 89 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 36788999999999999999999999999999997 4555567777777777766666653
No 176
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.09 E-value=0.0046 Score=40.76 Aligned_cols=74 Identities=4% Similarity=-0.026 Sum_probs=52.5
Q ss_pred cccccCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC--CH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034553 2 VLDCDCHN----VKALYRRAQVYMEIADLILAELDIKKAIEADPQ--NR----EVKLLQKSLKQLQAESNKRDAKFYANM 71 (91)
Q Consensus 2 al~~~p~~----~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~--~~----~~~~~l~~~~~~~~~~~~~~~~~~~~m 71 (91)
+++++|++ ..+++.+|.++..+|++++|+..+++++.+.+. +. .+...+..+....+...++ ...+.+.
T Consensus 35 al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~a 113 (406)
T 3sf4_A 35 AVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEA-IVCCQRH 113 (406)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH-HHHHHHH
T ss_pred HHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHH
Confidence 56678887 468999999999999999999999999998654 33 2444455555544544443 4556666
Q ss_pred hhccc
Q 034553 72 FARVT 76 (91)
Q Consensus 72 f~~~~ 76 (91)
....+
T Consensus 114 l~~~~ 118 (406)
T 3sf4_A 114 LDISR 118 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 177
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.08 E-value=0.0036 Score=39.84 Aligned_cols=48 Identities=15% Similarity=0.027 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 034553 7 CHNVKALYRRAQVYME----IADLILAELDIKKAIEADPQNREVKLLQKSLKQL 56 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~----lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~ 56 (91)
|+++.+++.+|.++.. .+++++|+..|+++++++ +..+...+..+...
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~ 86 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYS 86 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhC
Confidence 6677777777777777 777777777777777764 56666666666555
No 178
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.05 E-value=0.00096 Score=42.51 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=53.7
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEA--------DPQNREVKLLQKSLKQLQAESNKRDAKFYANMFA 73 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~ 73 (91)
+|....+++.+|.++..+|++++|+..|++++++ +|....+...+..+....++..++.. .+.++..
T Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~ 223 (311)
T 3nf1_A 149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAET-LYKEILT 223 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHH
Confidence 4667889999999999999999999999999998 66666778888888888777776643 4455443
No 179
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.04 E-value=0.00064 Score=44.73 Aligned_cols=34 Identities=6% Similarity=0.041 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQN 43 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~ 43 (91)
..++...|.++..+|+|++|+..|++++++.|++
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 5677777888888888888888888888776543
No 180
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.00 E-value=0.00036 Score=46.80 Aligned_cols=58 Identities=7% Similarity=0.003 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHHHHHH
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN-------REVKLLQKSLKQLQAESNKRD 64 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~-------~~~~~~l~~~~~~~~~~~~~~ 64 (91)
+..+.+++.+|.++..+|+++.|+..+++|+++.+.. ..+...+..+....++..++.
T Consensus 140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 204 (383)
T 3ulq_A 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAI 204 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3466889999999999999999999999999985433 245666666666666666653
No 181
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.91 E-value=0.001 Score=46.22 Aligned_cols=43 Identities=14% Similarity=-0.032 Sum_probs=38.8
Q ss_pred CcccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH
Q 034553 1 MVLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR 44 (91)
Q Consensus 1 ~al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~ 44 (91)
+||.++| +.-+|..+|.++...|++++|++.|.+|+.++|...
T Consensus 302 rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 302 TGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 3678887 478999999999999999999999999999999865
No 182
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.90 E-value=0.0011 Score=41.37 Aligned_cols=51 Identities=12% Similarity=0.073 Sum_probs=28.9
Q ss_pred cCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHH
Q 034553 6 DCHNVKALYRRAQVYME----IADLILAELDIKKAIEADPQ--NREVKLLQKSLKQL 56 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~----lg~~~~A~~~~~~al~l~p~--~~~~~~~l~~~~~~ 56 (91)
+++++.+++.+|.++.. .+++++|+..|+++++..|. +..+...|..+...
T Consensus 81 ~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~ 137 (212)
T 3rjv_A 81 EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS 137 (212)
T ss_dssp HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence 34566666666666655 55666666666666666552 24555555544443
No 183
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.86 E-value=0.009 Score=37.94 Aligned_cols=55 Identities=7% Similarity=-0.052 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNR----EVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~----~~~~~l~~~~~~~~~~~~~ 63 (91)
+...++..|.+++..|++++|+..|+++++++|++. .+...+..+....++..++
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 62 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKA 62 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 356789999999999999999999999999999985 4555666666555555444
No 184
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.81 E-value=0.0055 Score=39.75 Aligned_cols=55 Identities=16% Similarity=0.047 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHCCCCH----HHHHHHHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAI---EADPQNR----EVKLLQKSLKQLQAESNKRD 64 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al---~l~p~~~----~~~~~l~~~~~~~~~~~~~~ 64 (91)
..+++..|.++..+|+|++|+..|++++ +..|++. .+...+..+....+++.++.
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al 216 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL 216 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHH
Confidence 6789999999999999999999999999 4566654 46667777777777766653
No 185
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.75 E-value=0.0015 Score=42.49 Aligned_cols=58 Identities=14% Similarity=0.052 Sum_probs=47.2
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHH-HHHH
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN------REVKLLQKSLKQLQAE-SNKR 63 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~------~~~~~~l~~~~~~~~~-~~~~ 63 (91)
.|..+.+++..|.++..+|+|++|+..+++++++.+.. ..+...+..+...+++ ..++
T Consensus 192 ~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A 256 (293)
T 3u3w_A 192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEI 256 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34456789999999999999999999999999987554 5788888888888773 3444
No 186
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.73 E-value=0.0049 Score=41.26 Aligned_cols=65 Identities=15% Similarity=0.008 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIE-----ADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~-----l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
...+++.+|.++..+|++++|+..|+++++ .+|....+...+..+....++..++.. .+.+....
T Consensus 221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~ 290 (378)
T 3q15_A 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQ-FIEEGLDH 290 (378)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHH
Confidence 346788888888888888888888888888 566666777777777777777666533 34444443
No 187
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=96.72 E-value=0.0081 Score=40.20 Aligned_cols=44 Identities=11% Similarity=-0.071 Sum_probs=31.9
Q ss_pred CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 034553 7 CH-NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQK 51 (91)
Q Consensus 7 p~-~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~ 51 (91)
|. .+.+++++|.++..+|+.++|...|++++..+|+ ..+...|.
T Consensus 204 P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 204 EACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp TTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 44 5667777777777777777777777777777777 66655553
No 188
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.71 E-value=0.0034 Score=39.17 Aligned_cols=54 Identities=13% Similarity=-0.023 Sum_probs=43.9
Q ss_pred cccccC--CCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 034553 2 VLDCDC--HNVKALYRRAQVYME----IADLILAELDIKKAIEADPQNREVKLLQKSLKQL 56 (91)
Q Consensus 2 al~~~p--~~~ka~~rrg~a~~~----lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~ 56 (91)
+++.+| +++.+++.+|.++.. .+++++|+..|++++++ |.+..+...|..+...
T Consensus 115 A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 115 AARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ 174 (212)
T ss_dssp HTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred HHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence 345555 359999999999999 88999999999999999 6667777777776543
No 189
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.69 E-value=0.0029 Score=38.87 Aligned_cols=73 Identities=8% Similarity=0.044 Sum_probs=60.1
Q ss_pred ccccCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553 3 LDCDCHNVKALYRRAQVYMEIA---DLILAELDIKKAIEAD-P-QNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT 76 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg---~~~~A~~~~~~al~l~-p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~ 76 (91)
++.+|.+.++.|+.|.++.++. +.++++..|+.+++.+ | ++.++.-.+.....+++++.++. ..+..++..-+
T Consensus 25 ~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~-~y~~~lL~ieP 102 (152)
T 1pc2_A 25 KAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL-KYVRGLLQTEP 102 (152)
T ss_dssp HHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH-HHHHHHHHHCT
T ss_pred HccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH-HHHHHHHhcCC
Confidence 3456889999999999999999 7779999999999999 7 56788899998888888888773 45666665544
No 190
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.59 E-value=0.0078 Score=40.22 Aligned_cols=55 Identities=16% Similarity=0.082 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----C-CCCHHHHHHHHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEA-----D-PQNREVKLLQKSLKQLQAESNKRD 64 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l-----~-p~~~~~~~~l~~~~~~~~~~~~~~ 64 (91)
..+++.+|.++..+|++++|+..|++++++ + |....+...+..+....++..++.
T Consensus 224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 284 (383)
T 3ulq_A 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAH 284 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHH
Confidence 358899999999999999999999999994 5 666677777777777776666553
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.59 E-value=0.012 Score=33.34 Aligned_cols=30 Identities=17% Similarity=0.088 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
..+++.+|.++..+|++++|+..+++++++
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 445666666666666666666666666665
No 192
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.58 E-value=0.0053 Score=36.88 Aligned_cols=60 Identities=10% Similarity=-0.073 Sum_probs=44.5
Q ss_pred ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---CCCCH----HHHHHHHHHHHHHHHHHHHH
Q 034553 5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEA---DPQNR----EVKLLQKSLKQLQAESNKRD 64 (91)
Q Consensus 5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l---~p~~~----~~~~~l~~~~~~~~~~~~~~ 64 (91)
..|....+++.+|.++..+|++++|+..+++++.+ .|++. .+...+..+....++..++.
T Consensus 61 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 127 (203)
T 3gw4_A 61 DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGAR 127 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 44566788999999999999999999999999998 44332 45666666666666665553
No 193
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.56 E-value=0.0051 Score=39.88 Aligned_cols=53 Identities=13% Similarity=0.040 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHHH
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEADPQN------REVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~------~~~~~~l~~~~~~~~~~~~~ 63 (91)
.+++..|.++..+|+|++|+..+++++++.++. ..+...+..+...+++..++
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 799999999999999999999999999986431 46677777777777666555
No 194
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=96.52 E-value=0.014 Score=39.63 Aligned_cols=66 Identities=18% Similarity=0.166 Sum_probs=47.8
Q ss_pred ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034553 5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADP--QNREVKLLQKSLKQLQAESNKRDAKFYANM 71 (91)
Q Consensus 5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~m 71 (91)
..+...-+++..|.++...|++++|+..+.+++..+| ++.++...+..+.-.+++...+.+ .+++|
T Consensus 95 ~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k-~l~~~ 162 (310)
T 3mv2_B 95 DKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAST-IFDNY 162 (310)
T ss_dssp TSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHH-HHHHH
Confidence 3455677788999999999999999999999988887 566666666666666555555432 34444
No 195
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=96.48 E-value=0.0036 Score=43.44 Aligned_cols=67 Identities=13% Similarity=0.069 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553 7 CHNVKALYRRAQVYME----IADLILAELDIKKAIEADPQ---NREVKLLQKSLKQLQAESNKRDAKFYANMFARVT 76 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~----lg~~~~A~~~~~~al~l~p~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~ 76 (91)
..++.+++++|.++.. .+++++|+..|+++++.+|+ +..+...+..+.... ... .....+++|.+.+
T Consensus 396 ~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~--~~~-a~~~a~~~~~~~~ 469 (490)
T 2xm6_A 396 QGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQ--LQQ-AELLSQQYIEKYA 469 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHH--HHH-HHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhH--HHH-HHHHHHHHHHHHH
Confidence 4578888999999888 88999999999999998854 667777666654321 111 1234666776654
No 196
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.41 E-value=0.0083 Score=34.11 Aligned_cols=53 Identities=15% Similarity=0.036 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHHH
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEADPQN------REVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~------~~~~~~l~~~~~~~~~~~~~ 63 (91)
.+++..|.++..+|++++|+..+++++.+.|.. ..+...+..+....++..++
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 108 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 108 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHH
Confidence 578889999999999999999999999876542 23455555555555555554
No 197
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.40 E-value=0.0045 Score=43.56 Aligned_cols=65 Identities=12% Similarity=-0.016 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEA-----DPQNRE---VKLLQKSLKQLQAESNKRDAKFYANMF 72 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l-----~p~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~mf 72 (91)
|.-...+..+|.+|..+|+|++|+..++++|++ -|++++ ....|..+....+++.+++. .+.+.+
T Consensus 337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~-~~~~Al 409 (433)
T 3qww_A 337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEK-ALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHH-HHHHHH
Confidence 344567899999999999999999999999986 466664 55566777777777777654 444443
No 198
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.35 E-value=0.0042 Score=37.32 Aligned_cols=59 Identities=7% Similarity=-0.001 Sum_probs=46.4
Q ss_pred cC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHH
Q 034553 6 DC-HNVKALYRRAQVYMEIADLILAELDIKKAIEAD------PQNREVKLLQKSLKQLQAESNKRD 64 (91)
Q Consensus 6 ~p-~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~------p~~~~~~~~l~~~~~~~~~~~~~~ 64 (91)
+| ....+++.+|.++..+|++++|+..+++++++. |....+...+..+....++..++.
T Consensus 21 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 86 (203)
T 3gw4_A 21 HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAAR 86 (203)
T ss_dssp STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 44 678899999999999999999999999999952 333456777777777777666653
No 199
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.27 E-value=0.0056 Score=40.14 Aligned_cols=62 Identities=18% Similarity=0.001 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQN------REVKLLQKSLKQLQAESNKRDAKFYANMFA 73 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~ 73 (91)
..++...|.++.. |++++|+..|++++++.|.. ..+...+..+...++++.++.. .+.+...
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~ 183 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA-SLQKEKS 183 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHH
Confidence 4678888888888 99999999999999887643 3456666666666666665532 3444443
No 200
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.15 E-value=0.008 Score=40.23 Aligned_cols=38 Identities=11% Similarity=-0.061 Sum_probs=35.0
Q ss_pred ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC
Q 034553 5 CDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQ 42 (91)
Q Consensus 5 ~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~ 42 (91)
.+|..+.+++..|.++..+|++++|+..+++++++.+.
T Consensus 256 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 256 VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999653
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.15 E-value=0.047 Score=31.83 Aligned_cols=48 Identities=15% Similarity=-0.002 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 034553 7 CHNVKALYRRAQVYME----IADLILAELDIKKAIEADPQNREVKLLQKSLKQL 56 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~----lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~ 56 (91)
.+++.|++.+|.++.. .+++++|+..|+++.+. .++.+...|..+...
T Consensus 54 ~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 54 LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA 105 (138)
T ss_dssp TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence 4789999999999998 89999999999999986 677888888777665
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.98 E-value=0.0096 Score=42.49 Aligned_cols=65 Identities=6% Similarity=0.006 Sum_probs=48.2
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEA-----DPQNRE---VKLLQKSLKQLQAESNKRDAKFYANM 71 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l-----~p~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~m 71 (91)
+|.-...+..+|.+|..+|+|++|+..++++|++ -|+++. ....|..+....+++.+++. .+.+.
T Consensus 347 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~-~~~~A 419 (490)
T 3n71_A 347 NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHG-MICKA 419 (490)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHH
Confidence 3445678999999999999999999999999987 466664 55566666666667766643 34433
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.98 E-value=0.03 Score=39.15 Aligned_cols=49 Identities=8% Similarity=0.024 Sum_probs=38.5
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHH
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEA-----DPQNREVKLLQKSLK 54 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l-----~p~~~~~~~~l~~~~ 54 (91)
.|.-...++++|.+|..+|++++|+..|++|+++ -|+++.+...+..+.
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~ 420 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLE 420 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3445567999999999999999999999999986 577776555544433
No 204
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.83 E-value=0.023 Score=39.95 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=38.0
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHH
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEA-----DPQNREVKLLQKS 52 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l-----~p~~~~~~~~l~~ 52 (91)
.|+-...++++|.+|..+|+|++|+..|++|+++ -|+++.+......
T Consensus 378 Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~ 429 (433)
T 3qww_A 378 SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQE 429 (433)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 3445567999999999999999999999999996 5777766654443
No 205
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.66 E-value=0.016 Score=40.57 Aligned_cols=59 Identities=12% Similarity=-0.030 Sum_probs=45.0
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCHH---HHHHHHHHHHHHHHHHHHHH
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEA-----DPQNRE---VKLLQKSLKQLQAESNKRDA 65 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l-----~p~~~~---~~~~l~~~~~~~~~~~~~~~ 65 (91)
|.-...+...|.+|..+|+|++|+..+++++++ -|+++. ....|..+....+++.+++.
T Consensus 326 ~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~ 392 (429)
T 3qwp_A 326 IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMK 392 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 334577899999999999999999999999986 366664 45566666666666666643
No 206
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=95.65 E-value=0.013 Score=37.92 Aligned_cols=55 Identities=13% Similarity=0.017 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC---CCCH----HHHHHHHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEAD---PQNR----EVKLLQKSLKQLQAESNKRD 64 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~---p~~~----~~~~~l~~~~~~~~~~~~~~ 64 (91)
..++...|.++..+|+|++|+..|++++++- |.+. .+...+..+....+++.++.
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~ 216 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL 216 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4579999999999999999999999999642 2332 46677777777777776653
No 207
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=95.61 E-value=0.023 Score=42.10 Aligned_cols=72 Identities=10% Similarity=0.009 Sum_probs=59.0
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAE-LDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMFAR 74 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~-~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~ 74 (91)
+|...|.+++.|+..+.-+...|+.++|+ ..|.+|+...|.+..++-.+..+....+...+. +..|.+++..
T Consensus 335 aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~a-R~iyek~l~~ 407 (679)
T 4e6h_A 335 AAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEI-ETTILSCIDR 407 (679)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHH
Confidence 56778999999999999999999999997 999999999999988877777777776665443 4456666654
No 208
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=95.19 E-value=0.059 Score=37.38 Aligned_cols=47 Identities=6% Similarity=-0.072 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 034553 8 HNVKALYRRAQVYMEIA---DLILAELDIKKAIEADPQNREVKLLQKSLK 54 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg---~~~~A~~~~~~al~l~p~~~~~~~~l~~~~ 54 (91)
.++.+++.+|.++...| ++++|+..|+++.+..|.+......+..+.
T Consensus 174 ~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y 223 (452)
T 3e4b_A 174 TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVL 223 (452)
T ss_dssp TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34459999999999999 999999999999999988887655665554
No 209
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=94.99 E-value=0.099 Score=34.45 Aligned_cols=57 Identities=16% Similarity=0.022 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHHHHHHHH
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQN-----REVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~-----~~~~~~l~~~~~~~~~~~~~ 63 (91)
|....++..+|.++..+|++++|...+++++.+.|.. ..+...+..+....++..++
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 193 (373)
T 1hz4_A 132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNA 193 (373)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 4456778889999999999999999999999998753 23455566666655555554
No 210
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=94.76 E-value=0.17 Score=34.99 Aligned_cols=49 Identities=16% Similarity=0.053 Sum_probs=32.2
Q ss_pred cCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 034553 6 DCHNVKALYRRAQVYME----IADLILAELDIKKAIEADPQNREVKLLQKSLKQL 56 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~----lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~ 56 (91)
+++++.+++..|.++.. .++++.|+..|+++++. ++..+...|..+...
T Consensus 35 ~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~ 87 (490)
T 2xm6_A 35 ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMN 87 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence 45667777777777776 67777777777777664 455565555555444
No 211
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=94.67 E-value=0.1 Score=30.36 Aligned_cols=41 Identities=7% Similarity=-0.054 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHCCCCHHHHHH
Q 034553 7 CHNVKALYRRAQVYME----IADLILAELDIKKAIEADPQNREVKLL 49 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~----lg~~~~A~~~~~~al~l~p~~~~~~~~ 49 (91)
..++.+++.+|.++.. .+++++|+..|+++.+.. +..+...
T Consensus 90 ~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~ 134 (138)
T 1klx_A 90 LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGI 134 (138)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHH
Confidence 3689999999999999 899999999999999974 4444443
No 212
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=94.55 E-value=0.14 Score=34.66 Aligned_cols=73 Identities=14% Similarity=0.082 Sum_probs=49.5
Q ss_pred ccccC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHH--HHHHH--HHHHHHHHHHHHhh
Q 034553 3 LDCDC--HNVKALYRRAQVYMEIADLILAELDIKKAIEADPQ----NREVKLLQKSL--KQLQA--ESNKRDAKFYANMF 72 (91)
Q Consensus 3 l~~~p--~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~----~~~~~~~l~~~--~~~~~--~~~~~~~~~~~~mf 72 (91)
|..+| ++.+++...+.+++.+|+.+.|.+.+++..+.+|+ +..+...+... .-..+ ...++ -..|..+.
T Consensus 127 i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A-~~~f~El~ 205 (310)
T 3mv2_B 127 IDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSN-FYYYEELS 205 (310)
T ss_dssp HTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHH-HHHHHHHH
T ss_pred hccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHH-HHHHHHHH
Confidence 34555 89999999999999999999999999999999994 23444444433 22222 22222 33566655
Q ss_pred hccc
Q 034553 73 ARVT 76 (91)
Q Consensus 73 ~~~~ 76 (91)
...+
T Consensus 206 ~~~p 209 (310)
T 3mv2_B 206 QTFP 209 (310)
T ss_dssp TTSC
T ss_pred HhCC
Confidence 5543
No 213
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=94.49 E-value=0.24 Score=26.66 Aligned_cols=39 Identities=10% Similarity=0.050 Sum_probs=33.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 034553 14 YRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKS 52 (91)
Q Consensus 14 ~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~ 52 (91)
...|..+...|++++|..+|-+|+.+-|+-.++...+++
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q~ 59 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQ 59 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 357889999999999999999999999998877665543
No 214
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.11 E-value=0.14 Score=34.24 Aligned_cols=57 Identities=11% Similarity=-0.034 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHHHHHH
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADP------QNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p------~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
+...+.+.++|.++...|+|++|+..++.++..-. ...++...+.++....+...++
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 194 (434)
T 4b4t_Q 132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKS 194 (434)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHH
Confidence 34567889999999999999999999999988622 2235666666666666655554
No 215
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=94.10 E-value=0.24 Score=32.54 Aligned_cols=62 Identities=13% Similarity=-0.004 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEADP--------QNREVKLLQKSLKQLQAESNKRDAKFYANMFA 73 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p--------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~ 73 (91)
.+++.+|.++..+|++++|+..+++++++.+ ....+...+..+....++..++.. .+.+...
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~ 163 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA-SARSGIE 163 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHH-HHHHHHH
Confidence 4578899999999999999999999999853 223455556666666666666543 3444443
No 216
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=93.95 E-value=0.38 Score=35.66 Aligned_cols=73 Identities=8% Similarity=0.019 Sum_probs=57.6
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhcc
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAE---SNKRDAKFYANMFARV 75 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~mf~~~ 75 (91)
+|..||.+..+|.+........+.++.+...|++++...|....++......+...+. .... ...|.+.....
T Consensus 58 ~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v-~~lfeRal~~~ 133 (679)
T 4e6h_A 58 MIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVI-EPVLARCLSKE 133 (679)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHH-HHHHHHHTCSS
T ss_pred HHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHH-HHHHHHHHHhc
Confidence 4677999999999999999999999999999999999999999988887777666555 3332 33555555444
No 217
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=93.79 E-value=0.33 Score=35.87 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 62 (91)
..+...+|+..+.-|+|.-|.+.++.++..+|+|.+++..+..+-..+....+
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~ 501 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAE 501 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 45678899999999999999999999999999999999999999888877654
No 218
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=93.17 E-value=0.18 Score=35.63 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=41.5
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQ 50 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l 50 (91)
+|...|.+++.|+..+.-+...|+.+.|...|++|+.. |.+..+.-..
T Consensus 205 al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y 252 (493)
T 2uy1_A 205 ILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYY 252 (493)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 45667999999999999999999999999999999999 9987555433
No 219
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.08 E-value=0.57 Score=32.18 Aligned_cols=54 Identities=9% Similarity=-0.012 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
..+...++.++..+|++++|+..+..++..+|-+..+...+-.+....+...++
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~A 224 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDA 224 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 456677888899999999999999999999999998877776666655555444
No 220
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.89 E-value=0.84 Score=30.46 Aligned_cols=47 Identities=9% Similarity=-0.014 Sum_probs=40.8
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHH
Q 034553 3 LDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLL 49 (91)
Q Consensus 3 l~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~ 49 (91)
|+-+|.+.+.-.-..+.++-.|+++.|..-++.+.+++|+....-..
T Consensus 24 VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~ 70 (273)
T 1zbp_A 24 IKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQ 70 (273)
T ss_dssp HHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 56789999999999999999999999999999999999987654433
No 221
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=92.56 E-value=0.52 Score=38.36 Aligned_cols=29 Identities=14% Similarity=-0.057 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKA 36 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~a 36 (91)
+.+.+|+..|.++...|++++|+..|.++
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 45666666666666666666666666554
No 222
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=92.55 E-value=0.23 Score=34.37 Aligned_cols=31 Identities=16% Similarity=0.054 Sum_probs=13.8
Q ss_pred CCCHHHHHHHHHH-H--HHhCCHHHHHHHHHHHH
Q 034553 7 CHNVKALYRRAQV-Y--MEIADLILAELDIKKAI 37 (91)
Q Consensus 7 p~~~ka~~rrg~a-~--~~lg~~~~A~~~~~~al 37 (91)
|+++.+++.+|.+ + ...+++++|+..|+++.
T Consensus 245 ~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 245 PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 4444444444444 2 23444444444444444
No 223
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.48 E-value=0.41 Score=31.94 Aligned_cols=34 Identities=12% Similarity=0.024 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQN 43 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~ 43 (91)
|.+.+..|..+...|+|++|++.|..+++.+|+.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~ 37 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQ 37 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCS
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccc
Confidence 4567778888999999999999999999988864
No 224
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=92.46 E-value=0.38 Score=27.18 Aligned_cols=37 Identities=11% Similarity=0.057 Sum_probs=31.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 034553 15 RRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQK 51 (91)
Q Consensus 15 rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~ 51 (91)
..|..++..|+++.|+.+|-+|+.+-|+-.++...++
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~q 61 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQ 61 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5788999999999999999999999998666555443
No 225
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=91.50 E-value=0.55 Score=26.47 Aligned_cols=29 Identities=21% Similarity=0.060 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
+-.+-||+.+++.-|.|++||+..+++..
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45677999999999999999887766653
No 226
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.16 E-value=0.75 Score=28.52 Aligned_cols=54 Identities=13% Similarity=0.064 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC---CCCH----------------------HHHHHHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEAD---PQNR----------------------EVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~---p~~~----------------------~~~~~l~~~~~~~~~~~~~ 63 (91)
..+++..|.+++..++|..|...|++||.+- |.++ +++-.+..|...+++..++
T Consensus 63 ~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A 141 (167)
T 3ffl_A 63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA 141 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence 4578999999999999999999999997752 2221 5666677777777766554
No 227
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.80 E-value=0.18 Score=37.98 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=23.4
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKA 36 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~a 36 (91)
|+..-|...+.|++++.+|..+|+|+.|+-.++.+
T Consensus 363 AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 363 STELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34455677777777777777777777777666654
No 228
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=90.59 E-value=0.62 Score=33.12 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Q 034553 12 ALYRRAQVYMEIADLILAELDIKKA 36 (91)
Q Consensus 12 a~~rrg~a~~~lg~~~~A~~~~~~a 36 (91)
.|.++|.++.++|+|++|++.++++
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc
Confidence 4678899999999999999999988
No 229
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=88.34 E-value=1.4 Score=31.29 Aligned_cols=48 Identities=8% Similarity=-0.097 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 034553 13 LYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES 60 (91)
Q Consensus 13 ~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 60 (91)
+......|...|.+++|+..++.++.++|....+...+..+..+.+-.
T Consensus 210 l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~ 257 (449)
T 1b89_A 210 LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQ 257 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHH
Confidence 445667889999999999999999999999999999987776655443
No 230
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=88.29 E-value=2 Score=23.49 Aligned_cols=35 Identities=17% Similarity=0.100 Sum_probs=26.8
Q ss_pred ccCCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 5 CDCHNVKA--LYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 5 ~~p~~~ka--~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
.||...+| +..+|.-.-..|+|++|+..|..|+++
T Consensus 9 ~~~~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 9 MDPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46665555 677788889999999999999988874
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=87.71 E-value=1.7 Score=26.72 Aligned_cols=40 Identities=15% Similarity=-0.011 Sum_probs=31.7
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHH
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNRE 45 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~ 45 (91)
...+++.|.-.|+-..+.|+...|...+.+|+.+.|...+
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 4456777778888888888888888888888888887654
No 232
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=87.44 E-value=1.5 Score=35.88 Aligned_cols=52 Identities=8% Similarity=-0.078 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAES 60 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 60 (91)
+++-+...+..|...|.|++|+..|+.+|.++|.+..+..++..+..+.+-.
T Consensus 1279 ~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1279 HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHH
Confidence 4555667788899999999999999999999999988888887776665443
No 233
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=87.22 E-value=1 Score=32.27 Aligned_cols=54 Identities=7% Similarity=-0.116 Sum_probs=37.0
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQ 55 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~ 55 (91)
|+.++|++...|...|......|+.-+|+-.|.+++......+.+...|..+-.
T Consensus 178 A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 178 AAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 556777777777777777777777777777777777765555655555555444
No 234
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=86.77 E-value=2.5 Score=22.95 Aligned_cols=30 Identities=23% Similarity=0.036 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
+..+..+|.-.-..|+|++|+..|..|++.
T Consensus 19 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 19 ARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 345778888899999999999888887774
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=86.14 E-value=1 Score=26.57 Aligned_cols=71 Identities=7% Similarity=-0.017 Sum_probs=57.1
Q ss_pred ccCCCHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHHC-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553 5 CDCHNVKALYRRAQVYMEIADLIL---AELDIKKAIEAD-P-QNREVKLLQKSLKQLQAESNKRDAKFYANMFARVT 76 (91)
Q Consensus 5 ~~p~~~ka~~rrg~a~~~lg~~~~---A~~~~~~al~l~-p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~ 76 (91)
.++.+..+-|+.|.++.+.....+ ++..++..++-+ | ...+..-.|.....+++++.++. ..+..++..-+
T Consensus 30 ~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~-~~~~~lL~~eP 105 (126)
T 1nzn_A 30 AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL-KYVRGLLQTEP 105 (126)
T ss_dssp HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCT
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHhCC
Confidence 457889999999999999998888 898999888877 5 45688888899999999988873 45666665544
No 236
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=85.06 E-value=3.1 Score=22.47 Aligned_cols=30 Identities=23% Similarity=-0.046 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
+.-+..+|.-.-..|+|++|+..|..+++.
T Consensus 11 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 11 ARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 345788898999999999999888887764
No 237
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=84.79 E-value=2.6 Score=26.54 Aligned_cols=35 Identities=23% Similarity=0.060 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNR 44 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~ 44 (91)
+.-+|-.|..++..++|.+|.+++..|+...|.+.
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 45678899999999999999999999999988653
No 238
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=83.84 E-value=0.23 Score=36.89 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAKFYANMF 72 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf 72 (91)
..+...+|...+..|+|.-|.+.++.++..+|+|.+++..+..+-..++...+ -..++++|
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~--~~~~rn~y 521 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTE--NALWRNMY 521 (668)
Confidence 35677788888999999999999999999999999999999888888877654 23445543
No 239
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.12 E-value=3.5 Score=27.46 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=41.8
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 034553 18 QVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDAK 66 (91)
Q Consensus 18 ~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~ 66 (91)
..++..|++++|+..+...++-+|.|.+.+..+..+--..++..+++++
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~Q 53 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQ 53 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3567789999999999999999999999999998888777777776554
No 240
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=82.51 E-value=4.7 Score=22.52 Aligned_cols=41 Identities=10% Similarity=0.037 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034553 25 DLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDA 65 (91)
Q Consensus 25 ~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 65 (91)
....++..-..+++.+|+|+.+...++..-....-....+-
T Consensus 31 ~~~~~l~~Al~~L~~~psNPa~LAe~Qa~lseynl~RNaQS 71 (92)
T 2g0u_A 31 DLNKQLQDAQANLTKNPSDPTALANYQMIMSEYNLYRNAQS 71 (92)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677778899999987777666555555555443
No 241
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=80.52 E-value=5 Score=21.62 Aligned_cols=50 Identities=10% Similarity=0.045 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHHHHHH
Q 034553 13 LYRRAQVYMEIADLILAELDIKKAIEA------DPQNREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 13 ~~rrg~a~~~lg~~~~A~~~~~~al~l------~p~~~~~~~~l~~~~~~~~~~~~ 62 (91)
...+|.=+..+|+|+.|+..|+.+++. .=+|+..+.....+++.+.+.-+
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei~~E~~ 70 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINVEAK 70 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHHHHHHH
Confidence 456788899999999999999998874 12466777777777777665543
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=80.29 E-value=5.7 Score=30.03 Aligned_cols=53 Identities=15% Similarity=-0.056 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 034553 13 LYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKRDA 65 (91)
Q Consensus 13 ~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 65 (91)
+.-.+.-++..|+|+-|+..-++|..+.|.+-..+..|.++...+++++.+--
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALL 392 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALF 392 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHH
Confidence 34446667788999999999999999999999999999999999999988654
No 243
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=79.93 E-value=9.8 Score=27.25 Aligned_cols=50 Identities=14% Similarity=-0.005 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553 13 LYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 13 ~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 62 (91)
+.+.|-..-....++.|...|.+|+.+.|++....+.|..+....+..-+
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~ 204 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLT 204 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHH
Confidence 44455555555567999999999999999999999999888876444433
No 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=77.83 E-value=3 Score=25.78 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSL 53 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~ 53 (91)
..+.-|+.+.|+..++++++|+..++..-.- -....+.-.|.++
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakL 164 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANL 164 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHH
Confidence 3478899999999999999999887653221 1234454444443
No 245
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=77.40 E-value=9.9 Score=26.72 Aligned_cols=51 Identities=12% Similarity=0.033 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQA 58 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~ 58 (91)
-+.+.+.|-++...+-.++++.+...|++++...| +.+++...-.......
T Consensus 11 i~~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~ 61 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVS 61 (493)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhC
Confidence 45788999999999999999999999999999888 5666666655555443
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=76.88 E-value=3.2 Score=28.39 Aligned_cols=37 Identities=5% Similarity=-0.238 Sum_probs=33.2
Q ss_pred cccccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 2 VLDCDCHNVKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 2 al~~~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
++..+|-+..+|...-.+++..|+..+|+..|+++..
T Consensus 197 ~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 197 LTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3577999999999999999999999999999988655
No 247
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=76.01 E-value=9 Score=22.06 Aligned_cols=29 Identities=14% Similarity=-0.056 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
..+..+|+-.-..|+|++|+..|..++++
T Consensus 19 i~lv~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 19 IDLASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44777888888899999999988888774
No 248
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=74.73 E-value=8.4 Score=21.12 Aligned_cols=40 Identities=10% Similarity=-0.087 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 24 ADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 24 g~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
++..+++..-..+|+.+|+|+.+...++..-..-.-....
T Consensus 24 ~~~~~~v~~Ai~~L~~~PsnPa~LAeyQ~kl~eysl~rNa 63 (85)
T 2ca5_A 24 QTLQGELTLALDKLAKNPSNPQLLAEYQSKLSEYTLYRNA 63 (85)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777778888999998877766555444444433
No 249
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.64 E-value=1.9 Score=31.25 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNR 44 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~ 44 (91)
+.-+|..|..+.-.++|.+|...+..|+...|.+.
T Consensus 270 ~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 270 ARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 56678889999999999999999999999888653
No 250
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=71.59 E-value=10 Score=20.78 Aligned_cols=29 Identities=17% Similarity=0.085 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
..+..+|.-.-..|+|++|+..|..++++
T Consensus 16 i~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 16 VAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 44788898899999999999988887775
No 251
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=66.44 E-value=9.3 Score=24.82 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=30.5
Q ss_pred HHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 034553 19 VYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQL 56 (91)
Q Consensus 19 a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~ 56 (91)
+++..|.|++|.+.+++...-+|.+...+..|..+-..
T Consensus 123 VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~ 160 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIRE 160 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Confidence 45789999999999999999888887777776665443
No 252
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=64.92 E-value=5.9 Score=30.43 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=27.4
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAI 37 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al 37 (91)
-|.++-.-|-+|.+++..|++++|...|++|-
T Consensus 836 ~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 836 LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 35566667899999999999999999999865
No 253
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=63.56 E-value=5.2 Score=25.60 Aligned_cols=37 Identities=16% Similarity=0.040 Sum_probs=25.5
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 034553 18 QVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLK 54 (91)
Q Consensus 18 ~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~ 54 (91)
.+++..|.+++|.+.+++...-+|++...+..|..+-
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II 161 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMII 161 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4578999999999999999998888776666655543
No 254
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=62.65 E-value=16 Score=19.49 Aligned_cols=30 Identities=10% Similarity=-0.094 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
+..+..+|.-.-..|+|++|+..|..++++
T Consensus 13 A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 13 GIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345778888888899999999998888874
No 255
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=62.35 E-value=24 Score=21.60 Aligned_cols=34 Identities=15% Similarity=-0.003 Sum_probs=29.7
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
+|-++.-++..|.||-++|+..+|-+.+.+|.+-
T Consensus 121 ~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 121 NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4456889999999999999999999999998874
No 256
>1v0d_A DNA fragmentation factor 40 kDa subunit; hydrolase, nuclease, caspase-activated DNAse; HET: DNA; 2.6A {Mus musculus} SCOP: d.4.1.7 PDB: 1f2r_C 1c9f_A 1ibx_A*
Probab=62.15 E-value=3.2 Score=28.37 Aligned_cols=48 Identities=17% Similarity=0.287 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC-chhhhhhhhcccC
Q 034553 43 NREVKLLQKSLKQLQAESNKRDAKFYANMFARVTKD-SSVATKVGYFACD 91 (91)
Q Consensus 43 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~-~~~~~~~g~f~~~ 91 (91)
++.++..+.++-.......+.. ..++-+|.+.... ...=++-|||.||
T Consensus 182 ~~~ar~~~~~~~e~f~~~L~~~-~Y~g~yFdR~~~~~~~LCt~~G~F~Cq 230 (329)
T 1v0d_A 182 DEAAQEEYLRVLGSMCQKLKSV-QYNGSYFDRGAEASSRLCTPEGWFSCQ 230 (329)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHT-GGGGGGGCSSSCTTTCSSCTTCCEECC
T ss_pred CHHHHHHHHHHHHHHHHHHhcC-CccceeecccchhhhcccCCCCceeec
Confidence 3344444444444444444432 3567788774332 2357899999997
No 257
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=61.94 E-value=19 Score=20.17 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQNREVK 47 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~ 47 (91)
+..+.-.|.-++..++|.+|...|+++..+. +|+.+.
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t-en~~i~ 89 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALNLS-DNEEIK 89 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHccc-cCHHHH
Confidence 4556677888999999999999999999875 445443
No 258
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=61.39 E-value=29 Score=22.13 Aligned_cols=46 Identities=7% Similarity=-0.185 Sum_probs=35.7
Q ss_pred ccCCCHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q 034553 5 CDCHNVKALYR-RAQVYMEIADLILAELDIKKAIEADPQNREVKLLQ 50 (91)
Q Consensus 5 ~~p~~~ka~~r-rg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l 50 (91)
+||.+-+-++. .|..+-.+|+-++|+..+.+....+|=-+.+.+.+
T Consensus 108 vd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnli 154 (242)
T 3kae_A 108 VDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLL 154 (242)
T ss_dssp CCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred eccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHH
Confidence 46666666544 58889999999999999999999998766555433
No 259
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=60.69 E-value=11 Score=21.36 Aligned_cols=33 Identities=15% Similarity=-0.002 Sum_probs=26.0
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
+.++.+.++-.|.-..+.|+|++|...++.|-+
T Consensus 16 ~aG~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 16 YAGDARSKLLEALKAAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345678888888888999999998888877644
No 260
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=59.70 E-value=22 Score=21.77 Aligned_cols=40 Identities=15% Similarity=-0.099 Sum_probs=33.1
Q ss_pred cccCCCHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHCCCC
Q 034553 4 DCDCHNVKALYRRAQVYMEIADL------ILAELDIKKAIEADPQN 43 (91)
Q Consensus 4 ~~~p~~~ka~~rrg~a~~~lg~~------~~A~~~~~~al~l~p~~ 43 (91)
-+.|++++.|+.-.......|+. +.-++.|++|..--|..
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~ 52 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPD 52 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGG
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCcc
Confidence 46899999999999999999999 88889999999976653
No 261
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=59.54 E-value=12 Score=21.14 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
.++.+.++-.|.-..+.|+|++|...++.+-+
T Consensus 15 aG~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~ 46 (103)
T 1wcr_A 15 SGQARSLAYAALKQAKQGDFAAAKAMMDQSRM 46 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45677888888888889999888887776544
No 262
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=59.14 E-value=26 Score=24.88 Aligned_cols=35 Identities=11% Similarity=0.112 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-CCCC
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEA-DPQN 43 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l-~p~~ 43 (91)
.+.-+|..|..++..++|.+|.+++..|+.. .|.+
T Consensus 219 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 219 QIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 3456888999999999999999999999998 7765
No 263
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=56.68 E-value=18 Score=20.61 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
..+.+.++-.|.-..+.|+|++|.+.++.|-+
T Consensus 19 aG~Ars~~~eAl~~Ak~gdfe~A~~~l~eA~~ 50 (109)
T 3k1s_A 19 SGNARSFAMEALQFAKQGKMAEADEAMVKAKE 50 (109)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678888888888999999999888877643
No 264
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=54.93 E-value=20 Score=20.87 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
..+.+.++-.|.-..+.|+|++|.+.++.|-+
T Consensus 34 aG~ARS~~~eAl~~Ak~gdfe~A~~~l~eA~e 65 (120)
T 3l8r_A 34 SGNARSIVHEAFDAMREKNYILAEQKLQEAND 65 (120)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35677788888888888888888887776543
No 265
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=54.28 E-value=34 Score=20.81 Aligned_cols=51 Identities=0% Similarity=-0.243 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC---HHHHHHHHH-HHHHHHHHHH
Q 034553 12 ALYRRAQVYMEIADLILAELDIKKAIEADPQN---REVKLLQKS-LKQLQAESNK 62 (91)
Q Consensus 12 a~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~---~~~~~~l~~-~~~~~~~~~~ 62 (91)
.-+..|..++..|+|=+|-+.++.+..-.|.. ..+...|-. +-..+-...+
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~r 88 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDF 88 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 45788999999999999999999999877654 344444444 4444444333
No 266
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=53.29 E-value=12 Score=29.15 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=27.4
Q ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 034553 6 DCHNVKALYRRAQVYMEIADLILAELDIKKAI 37 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~~A~~~~~~al 37 (91)
-|.++-.-|-+|.++...|++++|...|+++-
T Consensus 838 ~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 838 LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 35666677999999999999999999998863
No 267
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=50.81 E-value=47 Score=21.57 Aligned_cols=54 Identities=22% Similarity=0.251 Sum_probs=29.6
Q ss_pred HHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc--hhhhhhhhcc
Q 034553 32 DIKKAIEADPQNRE-VKLLQKSLKQLQAESNKRDAKFYANMFARVTKDS--SVATKVGYFA 89 (91)
Q Consensus 32 ~~~~al~l~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~--~~~~~~g~f~ 89 (91)
..+...+++|.+++ ..........++..... .++..+...+++. ..+..+|||+
T Consensus 132 I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~----~~~~~l~~~~~~~~v~~H~af~Yf~ 188 (284)
T 2prs_A 132 IHGKLVELMPQSRAKLDANLKDFEAQLASTET----QVGNELAPLKGKGYFVFHDAYGYFE 188 (284)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH----HHHHHHGGGTTCCEEEEESCCHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHHHHHHHHH----HHHHHHhcCCCCeEEEECccHHHHH
Confidence 34555668999874 45555555555544433 2344455444432 2366777774
No 268
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=49.92 E-value=43 Score=21.87 Aligned_cols=55 Identities=20% Similarity=0.255 Sum_probs=31.2
Q ss_pred HHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCch--hhhhhhhcc
Q 034553 31 LDIKKAIEADPQNRE-VKLLQKSLKQLQAESNKRDAKFYANMFARVTKDSS--VATKVGYFA 89 (91)
Q Consensus 31 ~~~~~al~l~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~~--~~~~~g~f~ 89 (91)
...+...+++|.+++ ..........++....+ .++..+....++.- .+..+|||+
T Consensus 136 ~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~----~~~~~l~~~~~~~~v~~H~af~Yf~ 193 (286)
T 3gi1_A 136 NIAKELGRLDPKHKDSYTKNAKAFKKEAEQLTE----EYTQKFKKVRSKTFVTQHTAFSYLA 193 (286)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH----HHHHHHTTCSCCEEEEEESCCHHHH
T ss_pred HHHHHHHHHChhhHHHHHHHHHHHHHHHHHHHH----HHHHHHhcCCCCEEEEECCchHHHH
Confidence 334555678999884 44555555555554433 34555555544332 367788874
No 269
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=48.95 E-value=33 Score=22.31 Aligned_cols=54 Identities=20% Similarity=0.316 Sum_probs=29.8
Q ss_pred HHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc--hhhhhhhhcc
Q 034553 32 DIKKAIEADPQNRE-VKLLQKSLKQLQAESNKRDAKFYANMFARVTKDS--SVATKVGYFA 89 (91)
Q Consensus 32 ~~~~al~l~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~--~~~~~~g~f~ 89 (91)
..+...+++|.+++ ..........++....+. ++..+....++. ..+..+|||+
T Consensus 135 I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~----~~~~l~~~~~~~~v~~H~af~Yf~ 191 (284)
T 3cx3_A 135 IADKLSEVDSEHKETYQKNAQAFIKKAQELTKK----FQPKFEKATQKTFVTQHTAFSYLA 191 (284)
T ss_dssp HHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHH----HHHHHHSCSCCCEEEEESCCHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCCCCEEEEECCchHHHH
Confidence 34455668999874 555555555555554332 344444444332 2367777774
No 270
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=48.26 E-value=49 Score=21.64 Aligned_cols=54 Identities=19% Similarity=0.224 Sum_probs=30.3
Q ss_pred HHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc--hhhhhhhhcc
Q 034553 32 DIKKAIEADPQNRE-VKLLQKSLKQLQAESNKRDAKFYANMFARVTKDS--SVATKVGYFA 89 (91)
Q Consensus 32 ~~~~al~l~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~--~~~~~~g~f~ 89 (91)
.-+...+++|.+++ ..........++....+ .++..+....++. ..+..+|||+
T Consensus 148 I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~----~~~~~l~~~~~~~~v~~H~af~Yf~ 204 (291)
T 1pq4_A 148 IAKELAELDPDNRDQYEANLAAFLAELERLNQ----ELGQILQPLPQRKFIVFHPSWAYFA 204 (291)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH----HHHHHHTTCSCCEEEESSCCCHHHH
T ss_pred HHHHHHHHCcccHHHHHHHHHHHHHHHHHHHH----HHHHHHhCCCCCEEEEECCchHHHH
Confidence 34455568999874 55555555555554433 3445555544433 2367777774
No 271
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.89 E-value=39 Score=19.55 Aligned_cols=26 Identities=15% Similarity=0.020 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 13 LYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 13 ~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
|..+|...-..|+-+.|+..|++++.
T Consensus 25 ~Is~AL~~DE~g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 25 FVNKGLNTDELGQKEEAKNYYKQGIG 50 (116)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 34444445556787788777776655
No 272
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=47.28 E-value=76 Score=22.76 Aligned_cols=30 Identities=10% Similarity=-0.065 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 034553 7 CHNVKALYRRAQVYMEIADLILAELDIKKA 36 (91)
Q Consensus 7 p~~~ka~~rrg~a~~~lg~~~~A~~~~~~a 36 (91)
.++...|-..|...+..++++.|+..|.++
T Consensus 678 ~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 678 ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 346788999999999999999999999985
No 273
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=46.97 E-value=17 Score=16.55 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHHHC
Q 034553 25 DLILAELDIKKAIEAD 40 (91)
Q Consensus 25 ~~~~A~~~~~~al~l~ 40 (91)
-|+.|+..|+.+|+.+
T Consensus 17 ayDKAVaSfk~alk~~ 32 (37)
T 3s6n_M 17 AYDKAVASFKHALKNG 32 (37)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4889999999988754
No 274
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=46.01 E-value=35 Score=22.81 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=29.7
Q ss_pred HHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC--C--chhhhhhhhcc
Q 034553 32 DIKKAIEADPQNRE-VKLLQKSLKQLQAESNKRDAKFYANMFARVTK--D--SSVATKVGYFA 89 (91)
Q Consensus 32 ~~~~al~l~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~--~--~~~~~~~g~f~ 89 (91)
..+...++||.+++ ..........++....+ .++..+...+. + -..+..+|||+
T Consensus 160 I~~~L~~~DP~~a~~Y~~Na~~~~~~L~~Ld~----~~~~~l~~~~~~~r~~v~~H~af~Yfa 218 (321)
T 1xvl_A 160 IRQAFVELDPDNAKYYNANAAVYSEQLKAIDR----QLGADLEQVPANQRFLVSCEGAFSYLA 218 (321)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH----HHHHHHTTSCGGGCEEEEEESTTHHHH
T ss_pred HHHHHHHHCcccHHHHHHHHHHHHHHHHHHHH----HHHHHHhhCcccCCEEEEECchHHHHH
Confidence 34555678999874 55555555555554433 34445554421 1 12367788874
No 275
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=45.17 E-value=70 Score=21.72 Aligned_cols=32 Identities=6% Similarity=0.011 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADP 41 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p 41 (91)
...-.+.|..+...|++++|+..|+.+|..-|
T Consensus 102 l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~ 133 (320)
T 3mkr_B 102 LIQRLQLCYQLTTVGKFEEAVEKFRSILLSVP 133 (320)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 44567889999999999999999999998654
No 276
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=45.14 E-value=41 Score=22.29 Aligned_cols=54 Identities=22% Similarity=0.314 Sum_probs=30.2
Q ss_pred HHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc--hhhhhhhhcc
Q 034553 32 DIKKAIEADPQNRE-VKLLQKSLKQLQAESNKRDAKFYANMFARVTKDS--SVATKVGYFA 89 (91)
Q Consensus 32 ~~~~al~l~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~~~--~~~~~~g~f~ 89 (91)
.-+...+++|.+++ ..........++....+. ++..+....++. ..+..+|||.
T Consensus 148 I~~~L~~~DP~~a~~Y~~N~~~~~~~L~~Ld~~----~~~~l~~~~~~~~v~~H~af~Yfa 204 (312)
T 2o1e_A 148 ITAQIVKQDPDNKEYYEKNSKEYIAKLQDLDKL----YRTTAKKAEKKEFITQHTAFGYLA 204 (312)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHH----HHHHHHSCSCCEEEESSCTTHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHH----HHHHhhccCCCEEEEECCchHHHH
Confidence 34455568999874 555555555555554332 344454444332 2377788874
No 277
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=44.29 E-value=40 Score=23.42 Aligned_cols=30 Identities=13% Similarity=0.076 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
.++.|+-+|.|+.++|+..+|+..++.+.+
T Consensus 337 ~aEv~Li~AEA~~~~g~~~~A~~~lN~vR~ 366 (461)
T 3kez_A 337 LSEAYLNAAEAAVQTGDNAKAVKYLNSIVQ 366 (461)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCchHHHHHHHHHHH
Confidence 468899999999999999999999988765
No 278
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=44.18 E-value=4.8 Score=26.59 Aligned_cols=35 Identities=17% Similarity=0.086 Sum_probs=0.0
Q ss_pred ccCCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 5 CDCHNVKA--LYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 5 ~~p~~~ka--~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
.||....| +..+|.-+-..|+|++|+..|..|+++
T Consensus 16 ~dp~~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~ 52 (257)
T 2ymb_A 16 QDPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDL 52 (257)
T ss_dssp -------------------------------------
T ss_pred CChhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45654444 788888899999999999999888774
No 279
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=43.24 E-value=35 Score=22.67 Aligned_cols=54 Identities=15% Similarity=0.152 Sum_probs=30.3
Q ss_pred HHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--CCc--hhhhhhhhcc
Q 034553 32 DIKKAIEADPQNRE-VKLLQKSLKQLQAESNKRDAKFYANMFARVT--KDS--SVATKVGYFA 89 (91)
Q Consensus 32 ~~~~al~l~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~--~~~--~~~~~~g~f~ 89 (91)
..+...+++|.+++ ..........++....+ .++..+...+ ++. ..+..+|||+
T Consensus 146 I~~~L~~~DP~~a~~Y~~Na~~~~~~L~~Ld~----~~~~~l~~~p~~~~~~v~~H~af~Yfa 204 (307)
T 3ujp_A 146 IRQAFVELDPDNAKYYNANAAVYSEQLKAIDR----QLGADLEQVPANQRFLVSCEGAFSYLA 204 (307)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH----HHHHHHSSSCGGGCEEEEEESTTHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHHHHHHHHH----HHHHHHhhccccCCEEEEECchHHHHH
Confidence 34555679999874 45555555555554433 3445555442 221 2377888874
No 280
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=43.19 E-value=18 Score=19.96 Aligned_cols=31 Identities=29% Similarity=0.160 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHH-------HHh---CCHHHHHHHHHHHHH
Q 034553 8 HNVKALYRRAQVY-------MEI---ADLILAELDIKKAIE 38 (91)
Q Consensus 8 ~~~ka~~rrg~a~-------~~l---g~~~~A~~~~~~al~ 38 (91)
..++.++++|..+ -.. |+-+.|+..|++++.
T Consensus 7 ~~ik~~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~ 47 (89)
T 3eab_A 7 ERVRVFHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIE 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHH
Confidence 3444555554444 344 666666666666554
No 281
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=43.17 E-value=48 Score=22.64 Aligned_cols=30 Identities=10% Similarity=-0.036 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
..|+|+.|..+...+++-+|+..++.|.+.
T Consensus 253 A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~ 282 (376)
T 3r9m_A 253 AYAYCYHGETLLASDKCGEAIRSLQEAEKL 282 (376)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 457888888888888998888888877664
No 282
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.57 E-value=18 Score=25.01 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQ 42 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~ 42 (91)
..+++..+|..++..|+++.|.+.|.++......
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~ 163 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS 163 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Confidence 4557888999999999999999999999886543
No 283
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=42.36 E-value=50 Score=21.93 Aligned_cols=54 Identities=9% Similarity=0.106 Sum_probs=28.7
Q ss_pred HHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--CC--chhhhhhhhcc
Q 034553 32 DIKKAIEADPQNRE-VKLLQKSLKQLQAESNKRDAKFYANMFARVT--KD--SSVATKVGYFA 89 (91)
Q Consensus 32 ~~~~al~l~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~--~~--~~~~~~~g~f~ 89 (91)
.-+...+++|.+++ ..........++....+. ++..+...+ ++ -..+..+|||+
T Consensus 153 I~~~L~~~DP~~a~~Y~~N~~~~~~~L~~Ld~~----~~~~l~~~~~~~~~~v~~H~af~Yfa 211 (313)
T 1toa_A 153 VYESLCKLLPGKTREFTQRYQAYQQQLDKLDAY----VRRKAQSLPAERRVLVTAHDAFGYFS 211 (313)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHH----HHHHHHTSCGGGCEEEEEESCCHHHH
T ss_pred HHHHHHHHChhhHHHHHHHHHHHHHHHHHHHHH----HHHHHhhCCccCCEEEEECCcHHHHH
Confidence 34555668999874 445555555555544332 344454443 22 12366677774
No 284
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=40.27 E-value=44 Score=23.19 Aligned_cols=30 Identities=20% Similarity=-0.017 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
-.-|+--+|.+++..++|++|+...+.++.
T Consensus 189 k~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 189 KYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 345677889999999999999999998875
No 285
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, flagellum; 2.50A {Bordetella bronchiseptica}
Probab=39.97 E-value=55 Score=19.02 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=6.5
Q ss_pred HHHHHHHHhhhcccCCchhhhhhhhcc
Q 034553 63 RDAKFYANMFARVTKDSSVATKVGYFA 89 (91)
Q Consensus 63 ~~~~~~~~mf~~~~~~~~~~~~~g~f~ 89 (91)
......+.+++........++.||.|.
T Consensus 97 prl~eL~~li~~~~rq~~l~~aYg~~~ 123 (126)
T 3h3m_A 97 PQLARLSDLLGRMKRQQSLLATYSGKA 123 (126)
T ss_dssp HHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHHHhhHhhHHHHHHhccc
Confidence 334557888988888889999999874
No 286
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=39.76 E-value=32 Score=22.47 Aligned_cols=54 Identities=9% Similarity=0.129 Sum_probs=29.7
Q ss_pred HHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--CCch--hhhhhhhcc
Q 034553 32 DIKKAIEADPQNRE-VKLLQKSLKQLQAESNKRDAKFYANMFARVT--KDSS--VATKVGYFA 89 (91)
Q Consensus 32 ~~~~al~l~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~--~~~~--~~~~~g~f~ 89 (91)
..+...+++|.+++ ..........++....+ .++..+...+ ++.- .+..+|||+
T Consensus 119 I~~~L~~~dP~~a~~y~~N~~~~~~~L~~ld~----~~~~~l~~~~~~~~~~vt~H~af~Y~~ 177 (282)
T 3mfq_A 119 ASEELQKLLPAKAEMIQKNTEKYQAQLDDLHA----WVEKELSVIPKESRYLVTPHDAFNYFA 177 (282)
T ss_dssp HHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHH----HHHHHHTTSCGGGCEEECSSSCCHHHH
T ss_pred HHHHHHHhChhhHHHHHHHHHHHHHHHHHHHH----HHHHHHhcCCccCcEEEEECchHHHHH
Confidence 34445568999874 45555555555554433 3445555543 2221 267788874
No 287
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=39.62 E-value=47 Score=18.11 Aligned_cols=30 Identities=23% Similarity=0.238 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
.+++|+.-|.-++..|++..|+..+.=+..
T Consensus 34 mA~~Y~~Da~~fl~kGD~v~Ala~isYa~G 63 (86)
T 2oo2_A 34 NIEAYISDSRYFLEKGDLVRAFECVVWAWA 63 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 468899999999999999999988876544
No 288
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=39.19 E-value=46 Score=23.44 Aligned_cols=31 Identities=13% Similarity=-0.055 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
-.-|+--+|.+++..++|++|+...+.++..
T Consensus 202 k~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 202 NEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3457788999999999999999999999875
No 289
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=39.16 E-value=46 Score=23.10 Aligned_cols=29 Identities=21% Similarity=0.110 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
.-|+--+|.+++..|+|++|+...+.++.
T Consensus 196 ~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 45677889999999999999999998876
No 290
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=38.58 E-value=48 Score=23.10 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEAD 40 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~ 40 (91)
.-|+--+|.+++..++|++|+...+.++...
T Consensus 202 ~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 232 (477)
T 3mcx_A 202 WAAQALLSRVYLNMGEYQKAYDAATDVIKNN 232 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCC
Confidence 4467788999999999999999999998753
No 291
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium}
Probab=38.38 E-value=45 Score=19.24 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=19.0
Q ss_pred HHHHHHHhhhcccCCchhhhhhhhcc
Q 034553 64 DAKFYANMFARVTKDSSVATKVGYFA 89 (91)
Q Consensus 64 ~~~~~~~mf~~~~~~~~~~~~~g~f~ 89 (91)
.....+.+++........++.||.|.
T Consensus 85 rl~~L~~li~~~~rq~~l~~aYg~~~ 110 (122)
T 3a7m_A 85 RLDELSSLIGQSTRQKSLNNAYGRLS 110 (122)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhcCC
Confidence 33456777887777777888899874
No 292
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=38.28 E-value=62 Score=19.12 Aligned_cols=68 Identities=10% Similarity=0.066 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553 8 HNVKALYRRAQVYMEIADL---ILAELDIKKAIEADPQN-REVKLLQKSLKQLQAESNKRDAKFYANMFARVT 76 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~---~~A~~~~~~al~l~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~ 76 (91)
-.+.+-|+.|-++.+..+. ..++..++..++.+|.. .+..-.|.....+++++.++.+ ....++..-+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~-y~d~lL~~eP 109 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKR-YVDTLFEHER 109 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHTTCT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHH-HHHHHHhhCC
Confidence 3778999999999998866 46899999999999954 5899999999999999988743 4566655543
No 293
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=38.13 E-value=50 Score=18.01 Aligned_cols=30 Identities=20% Similarity=0.038 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
.+++|+.-|.-++..|++..|+..+.=+..
T Consensus 38 mA~~Y~~Da~~fl~kGD~v~Ala~isYa~G 67 (87)
T 2pmr_A 38 RALNYRDDSVYYLEKGDHITSFGCITYAHG 67 (87)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467899999999999999999988776544
No 294
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=37.10 E-value=80 Score=21.49 Aligned_cols=31 Identities=13% Similarity=-0.011 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEAD 40 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~ 40 (91)
...-.+.|..+...|++++|+..|+.+|..-
T Consensus 114 L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i 144 (325)
T 3mv2_A 114 VNEKMNEGYKNFKLNKPDIAIECFREAIYRI 144 (325)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 3445677888999999999999999998864
No 295
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=36.78 E-value=40 Score=22.15 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=30.8
Q ss_pred HHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC--Cc--hhhhhhhhcc
Q 034553 31 LDIKKAIEADPQNRE-VKLLQKSLKQLQAESNKRDAKFYANMFARVTK--DS--SVATKVGYFA 89 (91)
Q Consensus 31 ~~~~~al~l~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~~--~~--~~~~~~g~f~ 89 (91)
...+...+++|.+++ ..........++....+ .++..+...++ +. ..+..+|||+
T Consensus 138 ~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~----~~~~~l~~~~~~~~~~v~~H~af~Yf~ 197 (294)
T 3hh8_A 138 NIAKQLIAKDPKNKETYEKNLKAYVAKLEKLDK----EAKSKFDAIAENKKLIVTSEGCFKYFS 197 (294)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH----HHHHTTTTSCGGGCCEEEEESCCHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHHHHHHHH----HHHHHHhhCCccCcEEEEECChHHHHH
Confidence 344555679999884 44455555555544433 34555655543 21 2367788874
No 296
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=36.21 E-value=55 Score=22.83 Aligned_cols=31 Identities=16% Similarity=-0.009 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
-.-|+--+|.+++..|+|++|+...+.++..
T Consensus 196 k~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 196 KLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 3457778899999999999999999999864
No 297
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=34.31 E-value=69 Score=19.71 Aligned_cols=31 Identities=16% Similarity=0.068 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
++...|-+.|.+-+..|+++-|...|.++-.
T Consensus 32 ~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 32 NDSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 4667899999999999999999999987533
No 298
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=34.25 E-value=17 Score=18.50 Aligned_cols=18 Identities=22% Similarity=0.058 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhCCHHHHH
Q 034553 13 LYRRAQVYMEIADLILAE 30 (91)
Q Consensus 13 ~~rrg~a~~~lg~~~~A~ 30 (91)
-.-|...++..|+|++|+
T Consensus 43 ~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 43 TLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp HHHHHHHHHHC-------
T ss_pred HHHHHHHHHccchHhHhh
Confidence 455778899999999986
No 299
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=34.24 E-value=62 Score=22.55 Aligned_cols=31 Identities=10% Similarity=-0.103 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
.++.|+-+|.|+.++|+..+|+..++.+.+-
T Consensus 363 ~AEv~Li~AEA~~~~g~~~~A~~~lN~vR~R 393 (478)
T 3hdx_A 363 LEDITLLRAEALCALNRSTEAVSYLNMIRTN 393 (478)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 4788999999999999999999999987664
No 300
>3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MC midwest center for structural genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica subsp}
Probab=33.97 E-value=69 Score=18.43 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=7.0
Q ss_pred HHHHHHHhhhcccCCchhhhhhhhcc
Q 034553 64 DAKFYANMFARVTKDSSVATKVGYFA 89 (91)
Q Consensus 64 ~~~~~~~mf~~~~~~~~~~~~~g~f~ 89 (91)
.....+.+++........++.||.|.
T Consensus 88 rl~eL~~li~~~~rq~~l~~aYg~~~ 113 (123)
T 3nkz_A 88 RLDRLSDLVGQSTKQQAVNNTYGQFP 113 (123)
T ss_dssp HHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhcCC
Confidence 34557888988888889999999884
No 301
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=33.96 E-value=53 Score=22.74 Aligned_cols=30 Identities=3% Similarity=-0.032 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHhC--CHHHHHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIA--DLILAELDIKKAIE 38 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg--~~~~A~~~~~~al~ 38 (91)
.++.|+-+|.|+.++| +..+|+.+++.+.+
T Consensus 334 ~aEv~Li~AEA~~~~gg~~~~~A~~~lN~vR~ 365 (454)
T 3myv_A 334 LSEVYLIAAEAGCKLGGDAAVQGLGYLNEIVK 365 (454)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 4788999999999999 89999999988776
No 302
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=32.44 E-value=66 Score=23.62 Aligned_cols=31 Identities=13% Similarity=0.101 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
...++.|.+|.++..+|+.++|...|..+..
T Consensus 317 ~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 317 EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4688999999999999999999999988765
No 303
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=32.40 E-value=47 Score=23.17 Aligned_cols=32 Identities=13% Similarity=-0.074 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 8 HNVKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 8 ~~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
+-.-|+--+|.+++..++|++|+...+.++..
T Consensus 189 tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 189 NTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 34457788899999999999999999999864
No 304
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=32.00 E-value=91 Score=21.26 Aligned_cols=30 Identities=13% Similarity=0.081 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
..|+|+.|......+++-+|+..++.|.+.
T Consensus 275 A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~ 304 (380)
T 3c3r_A 275 ANAEYHQSILAKQQKKFGEEIARLQHAAEL 304 (380)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 346777888888888888888888877663
No 305
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=31.19 E-value=86 Score=21.92 Aligned_cols=31 Identities=19% Similarity=0.085 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
.++.|+-+|.|+..+|+..+|+..++++.+-
T Consensus 360 yAEvlL~~AEA~~~~g~~~~A~~~lN~VR~R 390 (481)
T 3jq1_A 360 YADVLLMLAEAYMNKGALDTSIGYINQIRRR 390 (481)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhCChHHHHHHHHHHHHh
Confidence 3788999999999999999999999888764
No 306
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=31.18 E-value=53 Score=16.26 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=12.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 15 RRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 15 rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
+-|..-+.-.|..-|++.++++|+
T Consensus 25 K~AiSAL~feDv~tA~~~L~~AL~ 48 (53)
T 2rkl_A 25 KYAISALNYEDLPTAKDELTKALD 48 (53)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHH
Confidence 334444444555555555555554
No 307
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=30.54 E-value=56 Score=22.75 Aligned_cols=30 Identities=10% Similarity=-0.058 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHhCCH-HHHHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIADL-ILAELDIKKAIE 38 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~-~~A~~~~~~al~ 38 (91)
.++.|+-+|.|+.++|+. .+|+.+++.+.+
T Consensus 356 ~aEvyLi~AEA~~~~g~~~~~A~~~lN~vR~ 386 (477)
T 3mcx_A 356 LSEVYLNAAEAGLKKGTDIEEAQGYLNDIIS 386 (477)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 478899999999999998 999999998887
No 308
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=30.10 E-value=74 Score=22.19 Aligned_cols=31 Identities=13% Similarity=-0.002 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIA-DLILAELDIKKAIEA 39 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg-~~~~A~~~~~~al~l 39 (91)
.++.|+-+|.|+.++| +..+|+..++.+.+-
T Consensus 320 ~aEvyLi~AEA~~~~gg~~~~A~~~lN~vR~r 351 (460)
T 3snx_A 320 SAEMYLIEAEAKVRDGVALDQAVAPLNTLRTA 351 (460)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 4688999999999999 999999999988763
No 309
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=29.88 E-value=83 Score=18.08 Aligned_cols=35 Identities=9% Similarity=0.071 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553 28 LAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 28 ~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 62 (91)
+-+..++.++.++.+++........+++.+.++-.
T Consensus 22 ~Vv~~lr~~l~l~~d~~~~~~a~~~ar~~ind~vs 56 (115)
T 2kmf_A 22 TVIATLREAIDLPQDAPNRQEVQDTARGQINDYIS 56 (115)
T ss_dssp HHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHH
Confidence 34566777888776666566666666666666543
No 310
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=29.87 E-value=92 Score=18.59 Aligned_cols=70 Identities=10% Similarity=0.073 Sum_probs=54.5
Q ss_pred cCCCHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 034553 6 DCHNVKALYRRAQVYMEIADLI---LAELDIKKAIEADPQN-REVKLLQKSLKQLQAESNKRDAKFYANMFARVT 76 (91)
Q Consensus 6 ~p~~~ka~~rrg~a~~~lg~~~---~A~~~~~~al~l~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~mf~~~~ 76 (91)
++-++++-|+.|.++.+..+.+ .++..++..+.-+|.. .+..-.|....-+++++.++. .....++..-+
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar-~y~d~lL~~eP 108 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAK-RYVDTLFEHER 108 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHTCC
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHH-HHHHHHHhcCC
Confidence 3568899999999999988665 6899999999989964 488888888888888888763 34555555443
No 311
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=29.54 E-value=1.3e+02 Score=20.39 Aligned_cols=42 Identities=5% Similarity=-0.077 Sum_probs=29.7
Q ss_pred ccCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHH
Q 034553 5 CDCHNVKALYRRAQV-YMEIADLILAELDIKKAIEADPQNREV 46 (91)
Q Consensus 5 ~~p~~~ka~~rrg~a-~~~lg~~~~A~~~~~~al~l~p~~~~~ 46 (91)
+.|.+.---.|.|.. .++.++|.-|....++.|++.|..+.+
T Consensus 201 LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a 243 (325)
T 3mv2_A 201 LSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRA 243 (325)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHH
Confidence 334333333445544 588999999999999999999975543
No 312
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=29.46 E-value=44 Score=19.17 Aligned_cols=47 Identities=11% Similarity=-0.088 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q 034553 12 ALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNKR 63 (91)
Q Consensus 12 a~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~ 63 (91)
+-.-|...++..|+|++|....+... .+++..++..+.-+++-..+.
T Consensus 42 v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~l 88 (116)
T 2p58_C 42 VQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCEYRLGLGSAL 88 (116)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHH
Confidence 34557788999999999986654322 456666677776666554443
No 313
>3ub0_A Non-structural protein 6, NSP6,; feline coronavirus, primer-independen polymerase, replication; 2.60A {Feline infectious peritonitis virus}
Probab=28.60 E-value=1.1e+02 Score=19.21 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 034553 25 DLILAELDIKKAIEADPQNREVKLLQK 51 (91)
Q Consensus 25 ~~~~A~~~~~~al~l~p~~~~~~~~l~ 51 (91)
.|+.|...|+++..-.... ...+.+.
T Consensus 18 ~YE~A~~~Ye~a~~ng~~p-Q~~Kql~ 43 (199)
T 3ub0_A 18 AYEKARADLEEAKKNDVSP-QLLKQLT 43 (199)
T ss_dssp HHHHHHHHHHHHHHTTCCH-HHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCH-HHHHHHH
Confidence 5899999999998876443 3333333
No 314
>3qtm_A Uncharacterized protein C4B3.07; tetratricopeptide repeat, enhancer of translation terminatio translation; HET: CME; 2.15A {Schizosaccharomyces pombe} PDB: 3qtn_B
Probab=28.15 E-value=1.1e+02 Score=20.78 Aligned_cols=38 Identities=8% Similarity=0.042 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHHCCCCHH-----HHHHHHHHHHHHHHHHH
Q 034553 25 DLILAELDIKKAIEADPQNRE-----VKLLQKSLKQLQAESNK 62 (91)
Q Consensus 25 ~~~~A~~~~~~al~l~p~~~~-----~~~~l~~~~~~~~~~~~ 62 (91)
-++.|++-++-+++..|++.. .+-.++++...+.....
T Consensus 100 FFDaALERielGLe~~p~s~~L~la~SKILlqrI~~~~~~~s~ 142 (346)
T 3qtm_A 100 YIDAAIERAQLGLDAPGNESRLFLALARAYLEKVRVLVWRHDN 142 (346)
T ss_dssp HHHHHHHHHHHGGGSSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhCCCChhHHHHHHHHHHHHHHHHHHhccc
Confidence 378999999999999999874 34445555555554443
No 315
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=28.01 E-value=90 Score=17.88 Aligned_cols=35 Identities=11% Similarity=0.040 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553 28 LAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 28 ~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 62 (91)
+-+..++.++.++.+++........++..+.++-.
T Consensus 18 ~Vv~~lr~~l~l~~d~~~~~~a~~~ar~~ind~vs 52 (113)
T 2y6x_A 18 ALISSLREAIALPENDPNKKAAQAEARKKLNDFFA 52 (113)
T ss_dssp HHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHH
Confidence 34566777888876666555555666666655533
No 316
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=27.81 E-value=1e+02 Score=18.46 Aligned_cols=33 Identities=12% Similarity=0.078 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADPQ 42 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~ 42 (91)
+.-|-.-|..+...|++.+|...|+.+++-...
T Consensus 101 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 101 SPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 444555678889999999999999999997544
No 317
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=27.35 E-value=81 Score=22.24 Aligned_cols=30 Identities=7% Similarity=-0.173 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
.-|+--+|.+++..++|++|+...+.++..
T Consensus 182 ~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 182 GAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457778899999999999999999999863
No 318
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=27.15 E-value=49 Score=16.27 Aligned_cols=20 Identities=15% Similarity=0.122 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHHHHCCCCH
Q 034553 25 DLILAELDIKKAIEADPQNR 44 (91)
Q Consensus 25 ~~~~A~~~~~~al~l~p~~~ 44 (91)
..+-|++.+..+++++|++.
T Consensus 29 SleVAiqCi~~aF~v~~~d~ 48 (52)
T 4gof_A 29 SLEVAIQCLETAFGVTVEDS 48 (52)
T ss_dssp HHHHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHcCCCcccc
Confidence 35779999999999999874
No 319
>3nqp_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Bacteroides fragilis nctc 9343}
Probab=26.33 E-value=1.2e+02 Score=21.37 Aligned_cols=30 Identities=10% Similarity=-0.169 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
.++.|+-+|.|..++|+..+|...++++.+
T Consensus 382 ~AEv~L~~AEA~~~~g~~~~A~~~lN~vR~ 411 (514)
T 3nqp_A 382 LPWVYLTLAEIANMEGDNAAVAKYINLVRK 411 (514)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 378999999999999999899998887655
No 320
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=26.11 E-value=1.2e+02 Score=19.30 Aligned_cols=22 Identities=5% Similarity=-0.106 Sum_probs=18.0
Q ss_pred HHHHHhCCHHHHHHHHHHHHHH
Q 034553 18 QVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 18 ~a~~~lg~~~~A~~~~~~al~l 39 (91)
-+++...+|++|+..++++-++
T Consensus 26 Dv~IA~r~feeAv~lle~~~~~ 47 (235)
T 2d2s_A 26 DIELARLRFESAVETLLDIESQ 47 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHH
Confidence 4678899999999999886654
No 321
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=24.81 E-value=90 Score=21.30 Aligned_cols=28 Identities=11% Similarity=-0.076 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
.|+|+.|......+++-+|+..++.|.+
T Consensus 258 ~A~y~~a~~~~e~~k~GeaIa~L~~A~~ 285 (392)
T 1zb1_A 258 LSAYYHGLHLEEENRVGEAIAFLDFSMQ 285 (392)
T ss_dssp HHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 4677778888888888888888887765
No 322
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=24.24 E-value=1.7e+02 Score=19.82 Aligned_cols=40 Identities=13% Similarity=0.198 Sum_probs=28.6
Q ss_pred ccCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCH
Q 034553 5 CDCHNVKALYRRAQV-YMEIADLILAELDIKKAIEADPQNR 44 (91)
Q Consensus 5 ~~p~~~ka~~rrg~a-~~~lg~~~~A~~~~~~al~l~p~~~ 44 (91)
+.|.+.---.|.|.. .++.++|.-|....++.|++.|+.+
T Consensus 192 Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 232 (320)
T 3mkr_B 192 LQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE 232 (320)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 344433334455544 5889999999999999999998633
No 323
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=23.96 E-value=1.4e+02 Score=18.79 Aligned_cols=32 Identities=6% Similarity=-0.057 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEADP 41 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p 41 (91)
+.-|-.-|..+...|++.+|...|+.+++-..
T Consensus 115 AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 115 SLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 34455567888999999999999999999653
No 324
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=23.76 E-value=1.2e+02 Score=21.56 Aligned_cols=30 Identities=17% Similarity=0.021 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
.-|+--+|.+++..++|++|...++.++..
T Consensus 198 ~aA~allarv~L~~~~~~~A~~~a~~vi~~ 227 (528)
T 3i4g_A 198 QAALAFLGRTCMLQKDWKSGAKAFHDIMEL 227 (528)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 457778899999999999999999998864
No 325
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=23.59 E-value=69 Score=18.94 Aligned_cols=21 Identities=19% Similarity=0.069 Sum_probs=15.3
Q ss_pred hCCHHHHHHHHHHHHHHCCCC
Q 034553 23 IADLILAELDIKKAIEADPQN 43 (91)
Q Consensus 23 lg~~~~A~~~~~~al~l~p~~ 43 (91)
+..|.+|+.+|...+.+=|..
T Consensus 112 ~k~Y~~a~adfdafl~liP~~ 132 (133)
T 3ls0_A 112 KIQYQEALADFDSFLNLLPQA 132 (133)
T ss_dssp HHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHhcCCC
Confidence 446888888888888887753
No 326
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=23.38 E-value=73 Score=16.84 Aligned_cols=21 Identities=19% Similarity=0.061 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHHHCCCCHH
Q 034553 25 DLILAELDIKKAIEADPQNRE 45 (91)
Q Consensus 25 ~~~~A~~~~~~al~l~p~~~~ 45 (91)
..+-|++.+..+++++|++..
T Consensus 34 SLeVAiqCI~~aF~v~~~d~~ 54 (74)
T 2lxb_A 34 SLNVAMDCISEAFGFEREAVS 54 (74)
T ss_dssp HHHHHHHHHHHHHTCCTTTHH
T ss_pred HHHHHHHHHHHHhCCCchhhH
Confidence 367899999999999999864
No 327
>3msv_A Nuclear import adaptor, NRO1; helix repeats, heat repeats, protein binding; 2.18A {Schizosaccharomyces pombe}
Probab=23.33 E-value=1.7e+02 Score=20.05 Aligned_cols=38 Identities=8% Similarity=0.042 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHHCCCCHH-----HHHHHHHHHHHHHHHHH
Q 034553 25 DLILAELDIKKAIEADPQNRE-----VKLLQKSLKQLQAESNK 62 (91)
Q Consensus 25 ~~~~A~~~~~~al~l~p~~~~-----~~~~l~~~~~~~~~~~~ 62 (91)
-++.|++-++-+++..|++.. .+..+.++...+.....
T Consensus 147 fFDaALERielGLe~~p~s~~L~la~sKIllqrI~~v~~~~s~ 189 (393)
T 3msv_A 147 YIDAAIERAQLGLDAPGNESRLFLALARAYLEKVRVLVWRHDN 189 (393)
T ss_dssp HHHHHHHHHHHHTTSCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhCCCChhHHHHHHHHHHHHHHHHHHhccc
Confidence 378999999999999998874 34445555555555443
No 328
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=22.99 E-value=94 Score=19.09 Aligned_cols=21 Identities=5% Similarity=-0.102 Sum_probs=17.1
Q ss_pred HHHHHhCCHHHHHHHHHHHHH
Q 034553 18 QVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 18 ~a~~~lg~~~~A~~~~~~al~ 38 (91)
..+..+|+|++|...+.....
T Consensus 40 ~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 40 KGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 457889999999998887655
No 329
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=22.67 E-value=18 Score=25.10 Aligned_cols=29 Identities=14% Similarity=-0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 11 KALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 11 ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
.-+..+|.-+-..|+|++|+..|..+++.
T Consensus 12 ~~~~~~Av~~D~~g~~~eA~~~Y~~a~~~ 40 (444)
T 2zan_A 12 IDLASKAAQEDKAGNYEEALQLYQHAVQY 40 (444)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34677888888889999998888887774
No 330
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=22.24 E-value=1.6e+02 Score=20.77 Aligned_cols=31 Identities=13% Similarity=0.088 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
.++.|+..|.|+..+|...+|+..++++.+-
T Consensus 391 yAEvlL~yAEA~~e~g~~~~a~~~iN~VR~R 421 (517)
T 3qnk_A 391 YAEIYLNDAEARLETGDVEGARKAVNMIRQR 421 (517)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 3688999999999999999999888777653
No 331
>3l22_A SUSD superfamily protein; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.05A {Bacteroides fragilis}
Probab=21.77 E-value=52 Score=22.70 Aligned_cols=26 Identities=19% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Q 034553 12 ALYRRAQVYMEIADLILAELDIKKAI 37 (91)
Q Consensus 12 a~~rrg~a~~~lg~~~~A~~~~~~al 37 (91)
|+--+|.+++..++|++|+...+.++
T Consensus 203 A~allarvyL~~~~~~~A~~~a~~vi 228 (441)
T 3l22_A 203 ANMLKMRVYMAMNEWDKAITAGELVT 228 (441)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHh
No 332
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=21.72 E-value=1.6e+02 Score=21.85 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIE 38 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~ 38 (91)
+.|+|+.|......+++-+|+..++.|..
T Consensus 260 A~A~y~~a~~~~e~~k~GeaIa~L~~A~~ 288 (704)
T 2xs1_A 260 ANAEYHQSILAKQQYYFGEEIARLQHAAE 288 (704)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHhHHHHHHHHHHHHHH
Confidence 34677778888888899899888888765
No 333
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=21.35 E-value=97 Score=21.74 Aligned_cols=29 Identities=14% Similarity=0.015 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 034553 10 VKALYRRAQVYMEIADLILAELDIKKAIEA 39 (91)
Q Consensus 10 ~ka~~rrg~a~~~lg~~~~A~~~~~~al~l 39 (91)
++.|+-+|.|+.++|+ .+|+..++.+.+-
T Consensus 347 aEv~Li~AEA~~~~g~-~~A~~~lN~vR~r 375 (495)
T 3lew_A 347 AEIYLINAEAKAHLND-PDAINKLNDLKTA 375 (495)
T ss_dssp HHHHHHHHHHHHHTTC-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCC-HHHHHHHHHHHHh
Confidence 7899999999999999 9999999887663
No 334
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=21.11 E-value=75 Score=18.19 Aligned_cols=46 Identities=7% Similarity=-0.245 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q 034553 12 ALYRRAQVYMEIADLILAELDIKKAIEADPQNREVKLLQKSLKQLQAESNK 62 (91)
Q Consensus 12 a~~rrg~a~~~lg~~~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 62 (91)
+-.-|...++..|+|++|....+... .+++..++..+.-+++-..+
T Consensus 41 v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~ 86 (115)
T 2uwj_G 41 ARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALCEWHLGLGAA 86 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHH
Confidence 34557788999999999886544321 45566666666666554443
No 335
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=20.51 E-value=94 Score=18.26 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=15.7
Q ss_pred hCCHHHHHHHHHHHHHHCCC
Q 034553 23 IADLILAELDIKKAIEADPQ 42 (91)
Q Consensus 23 lg~~~~A~~~~~~al~l~p~ 42 (91)
+..|.+|+.+|...+.+=|.
T Consensus 109 ~k~Y~~a~adfdafl~liP~ 128 (130)
T 3zsu_A 109 QEGFREAEADFKAYLNSLPE 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 44688888888888888775
No 336
>3iv0_A SUSD homolog; NP_809186.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.16 E-value=1.3e+02 Score=20.98 Aligned_cols=31 Identities=13% Similarity=-0.053 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHH
Q 034553 9 NVKALYRRAQVYMEIADLI-LAELDIKKAIEA 39 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~-~A~~~~~~al~l 39 (91)
.++.|+-+|.|+..+|+.. +|+..++.+.+-
T Consensus 367 yAEvlL~~AEA~~~~g~~~~~A~~~lN~VR~R 398 (481)
T 3iv0_A 367 YAGALLLYAEALAALGTNDTKACELLNRVRNR 398 (481)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCChHHHHHHHHHHHHh
Confidence 3788999999999999887 899988887764
No 337
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=20.10 E-value=1.6e+02 Score=17.84 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC
Q 034553 9 NVKALYRRAQVYMEIADLILAELDIKKAIEADPQ 42 (91)
Q Consensus 9 ~~ka~~rrg~a~~~lg~~~~A~~~~~~al~l~p~ 42 (91)
.+.-|-.-|..+...|++.+|.+.|+.+++-...
T Consensus 95 ~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 95 LAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 3444556678889999999999999999997643
No 338
>1s0p_A CAP, adenylyl cyclase-associated protein; alpha helix bundle, membrane protein; 1.40A {Dictyostelium discoideum} SCOP: a.192.1.1 PDB: 1tjf_A
Probab=20.09 E-value=94 Score=19.16 Aligned_cols=64 Identities=23% Similarity=0.268 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhcccCCchhhhhhhhcc
Q 034553 26 LILAELDIKKAIEA-----DPQNREVKLLQKSLKQLQAESNK-RDAKFYANMFARVTKDSSVATKVGYFA 89 (91)
Q Consensus 26 ~~~A~~~~~~al~l-----~p~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~mf~~~~~~~~~~~~~g~f~ 89 (91)
..+|...-+..|.+ .|++......|.-+...+.+-.+ ++...-+.+|+.++..++.-.-+||+.
T Consensus 34 v~~aF~~qr~~L~~as~~kKP~~~~~~~lL~pl~~~i~~i~~~re~nR~s~~fNHLsavsEgi~aLgWV~ 103 (176)
T 1s0p_A 34 LVKAIDAEKALINTASQSKKPSQETLLELIKPLNNFAAEVGKIRDSNRSSKFFNNLSAISESIGFLSWVV 103 (176)
T ss_dssp HHHHHHHHHHHHHHHHHEECCCHHHHHHHTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHTSGGGGGGGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHhhhhceeec
Confidence 44455444444443 58766655565666555554322 122223567777777777788888874
Done!