BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034556
MRHRRNTAPPAVNQPPKLTAVQATHHHNTLPLPTNTPQNLLKISSHSVQTLTKLLFSRNA
FKREDKEKFEKLRKDDDFYLICYLAGCHPAL

High Scoring Gene Products

Symbol, full name Information P value
AT1G65270 protein from Arabidopsis thaliana 9.0e-06

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034556
        (91 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2206270 - symbol:AT1G65270 "AT1G65270" species...   109  9.0e-06   1


>TAIR|locus:2206270 [details] [associations]
            symbol:AT1G65270 "AT1G65270" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0005783 "endoplasmic
            reticulum" evidence=IDA] [GO:0005774 "vacuolar membrane"
            evidence=IDA] GO:GO:0005783 EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0005774 EMBL:AC004512 EMBL:BT002430 EMBL:BT006319
            EMBL:AK316936 EMBL:AK316997 IPI:IPI00544929 PIR:T02349
            RefSeq:NP_564847.1 RefSeq:NP_849845.1 RefSeq:NP_974093.1
            UniGene:At.23170 PaxDb:O80798 PRIDE:O80798
            EnsemblPlants:AT1G65270.1 EnsemblPlants:AT1G65270.2
            EnsemblPlants:AT1G65270.3 GeneID:842834 KEGG:ath:AT1G65270
            TAIR:At1g65270 eggNOG:NOG260402 HOGENOM:HOG000243752
            InParanoid:O80798 OMA:DDFYRIR PhylomeDB:O80798
            ProtClustDB:CLSN2689029 ArrayExpress:O80798 Genevestigator:O80798
            Uniprot:O80798
        Length = 292

 Score = 109 (43.4 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 23/40 (57%), Positives = 27/40 (67%)

Query:    42 KISSHSVQTLTKLLFSRNAFKREDKEKFEKLRKDDDFYLI 81
             K  SH  +TLTKL FSRN F  E+K+ F+ L K DDFY I
Sbjct:   100 KTWSHGGKTLTKLRFSRNDFSAEEKDAFKNLLKGDDFYRI 139


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.134   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       91        73   0.00091  102 3  11 22  0.46    28
                                                     29  0.45    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  491 (52 KB)
  Total size of DFA:  88 KB (2066 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.89u 0.12s 10.01t   Elapsed:  00:00:01
  Total cpu time:  9.89u 0.12s 10.01t   Elapsed:  00:00:01
  Start:  Thu May  9 19:27:33 2013   End:  Thu May  9 19:27:34 2013

Back to top