BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034556
(91 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|147792793|emb|CAN71035.1| hypothetical protein VITISV_000357 [Vitis vinifera]
Length = 366
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/41 (70%), Positives = 31/41 (75%)
Query: 41 LKISSHSVQTLTKLLFSRNAFKREDKEKFEKLRKDDDFYLI 81
LK SSH QTLTKL FSRNAF +KEKFEKL + DDFY I
Sbjct: 102 LKTSSHGAQTLTKLRFSRNAFTEAEKEKFEKLLQGDDFYRI 142
>gi|225430906|ref|XP_002276581.1| PREDICTED: UPF0510 protein INM02-like [Vitis vinifera]
Length = 322
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/41 (70%), Positives = 31/41 (75%)
Query: 41 LKISSHSVQTLTKLLFSRNAFKREDKEKFEKLRKDDDFYLI 81
LK SSH QTLTKL FSRNAF +KEKFEKL + DDFY I
Sbjct: 120 LKTSSHGAQTLTKLRFSRNAFTEAEKEKFEKLLQGDDFYRI 160
>gi|297735243|emb|CBI17605.3| unnamed protein product [Vitis vinifera]
Length = 318
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/41 (70%), Positives = 31/41 (75%)
Query: 41 LKISSHSVQTLTKLLFSRNAFKREDKEKFEKLRKDDDFYLI 81
LK SSH QTLTKL FSRNAF +KEKFEKL + DDFY I
Sbjct: 116 LKTSSHGAQTLTKLRFSRNAFTEAEKEKFEKLLQGDDFYRI 156
>gi|224144967|ref|XP_002325478.1| predicted protein [Populus trichocarpa]
gi|118481091|gb|ABK92499.1| unknown [Populus trichocarpa]
gi|222862353|gb|EEE99859.1| predicted protein [Populus trichocarpa]
Length = 291
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 33/50 (66%)
Query: 32 LPTNTPQNLLKISSHSVQTLTKLLFSRNAFKREDKEKFEKLRKDDDFYLI 81
P T LK SH QTLTKL FSRN+F +K+KF+KL +DD+FY I
Sbjct: 83 FPAATFSARLKTWSHGAQTLTKLRFSRNSFTEVEKQKFQKLLEDDEFYRI 132
>gi|449485326|ref|XP_004157134.1| PREDICTED: ER membrane protein complex subunit 10-like [Cucumis
sativus]
Length = 300
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 3 HRRNTAPPA--------VNQPPKLTAVQATHHH---NTLPLPTNTPQNLLKISSHSVQTL 51
H R+T PP+ + P + VQ H ++ P LK SSH Q+L
Sbjct: 45 HTRSTPPPSRPTSTRRRFSDPDSDSKVQFQLEHSFGDSDFAPAGLFTARLKTSSHGGQSL 104
Query: 52 TKLLFSRNAFKREDKEKFEKLRKDDDFYLI 81
TK+ FSR+AF ED++KF L ++D FY +
Sbjct: 105 TKMRFSRDAFTEEDRKKFTTLLQEDGFYTV 134
>gi|357507827|ref|XP_003624202.1| hypothetical protein MTR_7g080350 [Medicago truncatula]
gi|355499217|gb|AES80420.1| hypothetical protein MTR_7g080350 [Medicago truncatula]
Length = 299
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/41 (60%), Positives = 30/41 (73%)
Query: 41 LKISSHSVQTLTKLLFSRNAFKREDKEKFEKLRKDDDFYLI 81
LK SH QTLTKL FSR+AF ++K KF++L K DDFY I
Sbjct: 97 LKTWSHGAQTLTKLRFSRDAFTEDEKNKFQELLKRDDFYRI 137
>gi|388516347|gb|AFK46235.1| unknown [Medicago truncatula]
Length = 299
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/41 (60%), Positives = 30/41 (73%)
Query: 41 LKISSHSVQTLTKLLFSRNAFKREDKEKFEKLRKDDDFYLI 81
LK SH QTLTKL FSR+AF ++K KF++L K DDFY I
Sbjct: 97 LKTWSHGAQTLTKLRFSRDAFTEDEKNKFQELLKRDDFYRI 137
>gi|388514339|gb|AFK45231.1| unknown [Medicago truncatula]
Length = 299
Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/41 (60%), Positives = 30/41 (73%)
Query: 41 LKISSHSVQTLTKLLFSRNAFKREDKEKFEKLRKDDDFYLI 81
LK SH QTLTKL FSR+AF ++K KF++L K DDFY I
Sbjct: 97 LKTWSHGAQTLTKLRFSRDAFTEDEKNKFQELLKRDDFYRI 137
>gi|388507674|gb|AFK41903.1| unknown [Medicago truncatula]
Length = 299
Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/41 (60%), Positives = 30/41 (73%)
Query: 41 LKISSHSVQTLTKLLFSRNAFKREDKEKFEKLRKDDDFYLI 81
LK SH QTLTKL FSR+AF ++K KF++L K DDFY I
Sbjct: 97 LKTWSHGAQTLTKLRFSRDAFTEDEKNKFQELLKRDDFYRI 137
>gi|195624498|gb|ACG34079.1| hypothetical protein [Zea mays]
Length = 297
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 4 RRNTAPPAVNQPPKLTAVQATHHHNTLP----LPTNTPQNLLKISSHSVQTLTKLLFSRN 59
RR +A + + AVQ T H+ P T LK +H QTLTKL F+RN
Sbjct: 60 RRRSADAPLPGAGESNAVQFTLEHDLGDGKGFAPAGTFSARLKTFAHGTQTLTKLRFTRN 119
Query: 60 AFKREDKEKFEKLRKDDDFYLI 81
F +DK F+K+ ++D FY I
Sbjct: 120 DFTEDDKAAFKKVLQEDGFYTI 141
>gi|195625456|gb|ACG34558.1| hypothetical protein [Zea mays]
Length = 297
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 4 RRNTAPPAVNQPPKLTAVQATHHHNTLP----LPTNTPQNLLKISSHSVQTLTKLLFSRN 59
RR +A + + AVQ T H+ P T LK +H QTLTKL F+RN
Sbjct: 60 RRRSADAPLPGAGESNAVQFTLEHDLGDGKGFAPAGTFSARLKTFAHGTQTLTKLRFTRN 119
Query: 60 AFKREDKEKFEKLRKDDDFYLI 81
F +DK F+K+ ++D FY I
Sbjct: 120 DFTEDDKAAFKKVLQEDGFYTI 141
>gi|297837901|ref|XP_002886832.1| hypothetical protein ARALYDRAFT_475538 [Arabidopsis lyrata subsp.
lyrata]
gi|297332673|gb|EFH63091.1| hypothetical protein ARALYDRAFT_475538 [Arabidopsis lyrata subsp.
lyrata]
Length = 292
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/49 (55%), Positives = 30/49 (61%)
Query: 33 PTNTPQNLLKISSHSVQTLTKLLFSRNAFKREDKEKFEKLRKDDDFYLI 81
P T LK SH +TLTKL FSRN F E+KE F+ L K DDFY I
Sbjct: 91 PAGTFSARLKTWSHGGKTLTKLRFSRNDFSAEEKEAFKNLLKGDDFYRI 139
>gi|242068265|ref|XP_002449409.1| hypothetical protein SORBIDRAFT_05g009740 [Sorghum bicolor]
gi|241935252|gb|EES08397.1| hypothetical protein SORBIDRAFT_05g009740 [Sorghum bicolor]
Length = 298
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 4 RRNTAPPAVNQPPKLTAVQATHHHNTLP----LPTNTPQNLLKISSHSVQTLTKLLFSRN 59
RR +A + + AVQ T H+ +P T LK +H QTLTKL F+RN
Sbjct: 61 RRRSADAPLPGAGESNAVQFTLEHDLGDGKGFVPAGTFSARLKTFAHGTQTLTKLRFTRN 120
Query: 60 AFKREDKEKFEKLRKDDDFYLI 81
+DK F+KL ++D FY I
Sbjct: 121 DLNEDDKVAFKKLLQEDGFYTI 142
>gi|413920706|gb|AFW60638.1| hypothetical protein ZEAMMB73_100896 [Zea mays]
Length = 211
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 4 RRNTAPPAVNQPPKLTAVQATHHHNTLP----LPTNTPQNLLKISSHSVQTLTKLLFSRN 59
RR +A + + AVQ T H+ + T LK +H QTLTKL F+RN
Sbjct: 60 RRRSADAPLPGSGESNAVQFTLEHDLGDGKGFVSAGTFSARLKTFAHGTQTLTKLRFTRN 119
Query: 60 AFKREDKEKFEKLRKDDDFYLI 81
F +DK F+K+ ++D FY I
Sbjct: 120 DFTEDDKAAFKKVLQEDGFYTI 141
>gi|18408239|ref|NP_564847.1| uncharacterized protein [Arabidopsis thaliana]
gi|30697168|ref|NP_849845.1| uncharacterized protein [Arabidopsis thaliana]
gi|42572005|ref|NP_974093.1| uncharacterized protein [Arabidopsis thaliana]
gi|3335335|gb|AAC27137.1| ESTs gb|F14113 and gb|T42122 come from this region [Arabidopsis
thaliana]
gi|27311649|gb|AAO00790.1| expressed protein [Arabidopsis thaliana]
gi|30023788|gb|AAP13427.1| At1g65270 [Arabidopsis thaliana]
gi|222423330|dbj|BAH19640.1| AT1G65270 [Arabidopsis thaliana]
gi|222423443|dbj|BAH19692.1| AT1G65270 [Arabidopsis thaliana]
gi|332196229|gb|AEE34350.1| uncharacterized protein [Arabidopsis thaliana]
gi|332196230|gb|AEE34351.1| uncharacterized protein [Arabidopsis thaliana]
gi|332196231|gb|AEE34352.1| uncharacterized protein [Arabidopsis thaliana]
Length = 292
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 30/49 (61%)
Query: 33 PTNTPQNLLKISSHSVQTLTKLLFSRNAFKREDKEKFEKLRKDDDFYLI 81
P T LK SH +TLTKL FSRN F E+K+ F+ L K DDFY I
Sbjct: 91 PAGTFSARLKTWSHGGKTLTKLRFSRNDFSAEEKDAFKNLLKGDDFYRI 139
>gi|21594383|gb|AAM66002.1| unknown [Arabidopsis thaliana]
Length = 292
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 30/49 (61%)
Query: 33 PTNTPQNLLKISSHSVQTLTKLLFSRNAFKREDKEKFEKLRKDDDFYLI 81
P T LK SH +TLTKL FSRN F ++K+ F+ L K DDFY I
Sbjct: 91 PAGTFSARLKTWSHGGKTLTKLRFSRNDFSAKEKDAFKNLLKGDDFYRI 139
>gi|212723586|ref|NP_001131332.1| uncharacterized protein LOC100192648 precursor [Zea mays]
gi|194691216|gb|ACF79692.1| unknown [Zea mays]
gi|413920705|gb|AFW60637.1| hypothetical protein ZEAMMB73_100896 [Zea mays]
Length = 297
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 4 RRNTAPPAVNQPPKLTAVQATHHHNTLP----LPTNTPQNLLKISSHSVQTLTKLLFSRN 59
RR +A + + AVQ T H+ + T LK +H QTLTKL F+RN
Sbjct: 60 RRRSADAPLPGSGESNAVQFTLEHDLGDGKGFVSAGTFSARLKTFAHGTQTLTKLRFTRN 119
Query: 60 AFKREDKEKFEKLRKDDDFYLI 81
F +DK F+K+ ++D FY I
Sbjct: 120 DFTEDDKAAFKKVLQEDGFYTI 141
>gi|388499688|gb|AFK37910.1| unknown [Lotus japonicus]
Length = 299
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 28/41 (68%)
Query: 41 LKISSHSVQTLTKLLFSRNAFKREDKEKFEKLRKDDDFYLI 81
LK SH QTLTKL F+R+ F +K KF++L + DDFY I
Sbjct: 93 LKTWSHGAQTLTKLRFTRDTFTDVEKNKFQELLQGDDFYKI 133
>gi|255547524|ref|XP_002514819.1| conserved hypothetical protein [Ricinus communis]
gi|223545870|gb|EEF47373.1| conserved hypothetical protein [Ricinus communis]
Length = 302
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 29/50 (58%)
Query: 32 LPTNTPQNLLKISSHSVQTLTKLLFSRNAFKREDKEKFEKLRKDDDFYLI 81
+P T LK +H QTLTKL FSRN +KE FEKL D+FY I
Sbjct: 94 VPAGTFSARLKTWNHGSQTLTKLRFSRNTLTDVEKENFEKLLVGDEFYKI 143
>gi|149390897|gb|ABR25466.1| unknown [Oryza sativa Indica Group]
Length = 131
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 32 LPTNTPQNLLKISSHSVQTLTKLLFSRNAFKREDKEKFEKLRKDDDFYLICYLA 85
+P + LK S+H QTLTKL F+RN ++K+ F+KL +D FY I L+
Sbjct: 8 VPAGSFSARLKSSAHGSQTLTKLRFTRNELTGDEKDAFKKLLDEDGFYSIRLLS 61
>gi|62733980|gb|AAX96089.1| expressed protein [Oryza sativa Japonica Group]
gi|77549691|gb|ABA92488.1| expressed protein [Oryza sativa Japonica Group]
gi|215769420|dbj|BAH01649.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 298
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 32 LPTNTPQNLLKISSHSVQTLTKLLFSRNAFKREDKEKFEKLRKDDDFYLICYLA 85
+P + LK S+H QTLTKL F+RN ++K+ F+KL +D FY I L+
Sbjct: 93 VPAGSFSARLKSSAHGSQTLTKLRFTRNELTGDEKDAFKKLLDEDGFYSIRLLS 146
>gi|125534001|gb|EAY80549.1| hypothetical protein OsI_35730 [Oryza sativa Indica Group]
Length = 298
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 32 LPTNTPQNLLKISSHSVQTLTKLLFSRNAFKREDKEKFEKLRKDDDFYLICYLA 85
+P + LK S+H QTLTKL F+RN ++K+ F+KL +D FY I L+
Sbjct: 93 VPAGSFSARLKSSAHGSQTLTKLRFTRNELTGDEKDAFKKLLDEDGFYSIRLLS 146
>gi|449442777|ref|XP_004139157.1| PREDICTED: uncharacterized protein LOC101203960 [Cucumis sativus]
Length = 158
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 3 HRRNTAPPA--------VNQPPKLTAVQATHHH---NTLPLPTNTPQNLLKISSHSVQTL 51
H R+T PP+ + P + VQ H ++ P LK SSH Q+L
Sbjct: 45 HTRSTPPPSRPTSTRRRFSDPDSDSKVQFQLEHSFGDSDFAPAGLFTARLKTSSHGGQSL 104
Query: 52 TKLLFSRNAFKREDKEKFEKLR 73
TK+ FSR+AF ED++KF +R
Sbjct: 105 TKMRFSRDAFTEEDRKKFTNMR 126
>gi|357156950|ref|XP_003577631.1| PREDICTED: UPF0510 protein INM02-like [Brachypodium distachyon]
Length = 299
Score = 42.7 bits (99), Expect = 0.028, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 32 LPTNTPQNLLKISSHSVQTLTKLLFSRNAFKREDKEKFEKLRKDDDFYLI 81
+P + LK S+H QTLTKL F+RN ++K+ F++L +D FY +
Sbjct: 94 VPAGSFSARLKSSAHGSQTLTKLRFTRNELMEDEKDAFKQLLNEDGFYTV 143
>gi|356568523|ref|XP_003552460.1| PREDICTED: UPF0510 protein INM02-like [Glycine max]
Length = 297
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 41 LKISSHSVQTLTKLLFSRNAFKREDKEKFEKLRKDDDFYLI 81
LK SH QTLTKL F R+ ++ KF++L ++DDFY I
Sbjct: 92 LKTWSHGAQTLTKLRFKRDLLTDVEQRKFKELLREDDFYRI 132
>gi|359806336|ref|NP_001241483.1| uncharacterized protein LOC100777187 precursor [Glycine max]
gi|255644807|gb|ACU22905.1| unknown [Glycine max]
Length = 296
Score = 42.4 bits (98), Expect = 0.038, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 41 LKISSHSVQTLTKLLFSRNAFKREDKEKFEKLRKDDDFYLI 81
LK SH QTLTKL F R+ +++KF++L + DDFY I
Sbjct: 91 LKTWSHGAQTLTKLRFKRDPLTDVEQKKFQELLQGDDFYTI 131
>gi|148906050|gb|ABR16184.1| unknown [Picea sitchensis]
Length = 299
Score = 42.0 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 20/95 (21%)
Query: 7 TAPPAVNQPPKLTAVQATHHHNTLPLPTNTPQNL--------------------LKISSH 46
+A +++PPK H + +++ N+ LK S H
Sbjct: 42 SAESDISRPPKFPRSSTAGHSDVFSTASDSKLNISLEHAFGYSDFSPAGYLTARLKPSPH 101
Query: 47 SVQTLTKLLFSRNAFKREDKEKFEKLRKDDDFYLI 81
QTLTKL +RN+ +++ F++L ++DDFY I
Sbjct: 102 GGQTLTKLRLTRNSLTESEQKVFKELLREDDFYRI 136
>gi|414868909|tpg|DAA47466.1| TPA: hypothetical protein ZEAMMB73_895208 [Zea mays]
Length = 556
Score = 41.2 bits (95), Expect = 0.078, Method: Composition-based stats.
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 49 QTLTKLLFSRNAFKREDKEKFEKLRKDDDFYLICYL 84
QTLTKL F+RN F +DK F K+ ++D FY I L
Sbjct: 267 QTLTKLRFTRNDFTEDDKATFNKVLREDGFYTIIRL 302
>gi|224286694|gb|ACN41050.1| unknown [Picea sitchensis]
Length = 299
Score = 41.2 bits (95), Expect = 0.080, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 20/95 (21%)
Query: 7 TAPPAVNQPPKLTAVQATHHHNTLPLPTNTPQNL--------------------LKISSH 46
+A + +PPK H + +++ N+ LK S H
Sbjct: 42 SAESDIARPPKFPRSSTAGHSDVFSTASDSKLNISLEHAFGYSDFSPAGYLTARLKPSPH 101
Query: 47 SVQTLTKLLFSRNAFKREDKEKFEKLRKDDDFYLI 81
QTLTKL +RN+ +++ F++L ++DDFY I
Sbjct: 102 GGQTLTKLRLTRNSLTESEQKVFKELLREDDFYRI 136
>gi|34558375|ref|NP_908190.1| flagellar motor protein [Wolinella succinogenes DSM 1740]
gi|34484094|emb|CAE11090.1| HYPOTHETICAL PROTEIN-PUTATIVE FLAGELLAR MOTOR PROTEIN [Wolinella
succinogenes]
Length = 261
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 12 VNQPPKLTAVQATHHHNTLPLPTNTPQNLLKISSHSVQTLTKLLFSRN 59
VN+ PK V+ H +TLPLP PQ+ L++++ +++KLL
Sbjct: 156 VNRLPKDVHVEVRGHTDTLPLPAQAPQDKLELTAKRALSVSKLLVKEG 203
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,412,006,824
Number of Sequences: 23463169
Number of extensions: 46672810
Number of successful extensions: 169674
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 169641
Number of HSP's gapped (non-prelim): 87
length of query: 91
length of database: 8,064,228,071
effective HSP length: 61
effective length of query: 30
effective length of database: 6,632,974,762
effective search space: 198989242860
effective search space used: 198989242860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)