BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034556
         (91 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4EV6|A Chain A, The Complete Structure Of Cora Magnesium Transporter From
           Methanocaldococcus Jannaschii
 pdb|4EV6|B Chain B, The Complete Structure Of Cora Magnesium Transporter From
           Methanocaldococcus Jannaschii
 pdb|4EV6|C Chain C, The Complete Structure Of Cora Magnesium Transporter From
           Methanocaldococcus Jannaschii
 pdb|4EV6|D Chain D, The Complete Structure Of Cora Magnesium Transporter From
           Methanocaldococcus Jannaschii
 pdb|4EV6|E Chain E, The Complete Structure Of Cora Magnesium Transporter From
           Methanocaldococcus Jannaschii
          Length = 339

 Score = 26.6 bits (57), Expect = 4.2,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 16/21 (76%)

Query: 65  DKEKFEKLRKDDDFYLICYLA 85
           D+++  ++ +D+DFYLI Y A
Sbjct: 82  DEQEIPRVEEDEDFYLIIYKA 102


>pdb|4EGW|A Chain A, The Structure Of The Soluble Domain Of Cora From
           Methanocaldococcus Jannaschii
 pdb|4EGW|B Chain B, The Structure Of The Soluble Domain Of Cora From
           Methanocaldococcus Jannaschii
          Length = 280

 Score = 26.2 bits (56), Expect = 4.4,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 16/21 (76%)

Query: 65  DKEKFEKLRKDDDFYLICYLA 85
           D+++  ++ +D+DFYLI Y A
Sbjct: 82  DEQEIPRVEEDEDFYLIIYKA 102


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.134    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,912,332
Number of Sequences: 62578
Number of extensions: 43060
Number of successful extensions: 136
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 7
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)