BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034556
         (91 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q983J7|TDH_RHILO L-threonine 3-dehydrogenase OS=Rhizobium loti (strain MAFF303099)
           GN=tdh PE=3 SV=1
          Length = 344

 Score = 30.4 bits (67), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 5   RNTAPPAVNQPPKLTAVQATHHHNTLPLPTNTPQNLLKI 43
           RNT    VN+P       A   HN +P+P + P  +  I
Sbjct: 112 RNTLGVGVNRPGAFGEYLAIPQHNVVPIPDDVPDEIAAI 150


>sp|Q15652|JHD2C_HUMAN Probable JmjC domain-containing histone demethylation protein 2C
           OS=Homo sapiens GN=JMJD1C PE=1 SV=2
          Length = 2540

 Score = 29.6 bits (65), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 4   RRNTAPPAVNQPPKLTAVQATHHHNTLPL--PTNTPQNLLKISSHSVQTLTKLLFSRNAF 61
           RRN+  P ++QP  +T+       + +P+   +  P   LKI++HS   LTK L   +  
Sbjct: 897 RRNSPSPWLHQPTPVTSADGIGLLSHIPVRPSSAEPHRPLKITAHSSPPLTKTLVDHHKE 956

Query: 62  KREDKEKFEKLR 73
           + E K   E LR
Sbjct: 957 ELERKAFMEPLR 968


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.133    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,241,891
Number of Sequences: 539616
Number of extensions: 1103127
Number of successful extensions: 4279
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4269
Number of HSP's gapped (non-prelim): 14
length of query: 91
length of database: 191,569,459
effective HSP length: 61
effective length of query: 30
effective length of database: 158,652,883
effective search space: 4759586490
effective search space used: 4759586490
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)