Query 034556
Match_columns 91
No_of_seqs 25 out of 27
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 06:11:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034556.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034556hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fgh_A Transcription factor A, 66.3 2.3 7.7E-05 24.7 1.2 18 59-76 38-55 (67)
2 2d7l_A WD repeat and HMG-box D 63.9 4.4 0.00015 25.2 2.3 18 59-76 46-63 (81)
3 2cs1_A PMS1 protein homolog 1; 63.8 4.1 0.00014 25.2 2.1 18 59-76 47-64 (92)
4 1wz6_A HMG-box transcription f 58.3 3.8 0.00013 24.6 1.2 18 59-76 47-64 (82)
5 2eqz_A High mobility group pro 57.4 4 0.00014 24.9 1.2 18 59-76 57-74 (86)
6 4a3n_A Transcription factor SO 57.1 3.6 0.00012 23.7 0.9 18 59-76 42-59 (71)
7 1hry_A Human SRY; DNA, DNA-bin 57.0 4.1 0.00014 24.0 1.2 18 59-76 44-61 (76)
8 1gt0_D Transcription factor SO 56.7 4.9 0.00017 23.9 1.5 18 59-76 42-59 (80)
9 1dzk_A PIG OBP, odorant-bindin 56.5 8.8 0.0003 24.5 2.8 27 52-78 114-141 (157)
10 1j46_A SRY, sex-determining re 56.2 5 0.00017 24.4 1.5 19 58-76 43-61 (85)
11 2lef_A LEF-1 HMG, protein (lym 56.1 5.1 0.00017 24.3 1.5 18 59-76 42-59 (86)
12 2eo2_A Adult MALE hypothalamus 54.6 2.9 0.0001 27.1 0.2 34 39-72 17-61 (71)
13 1v63_A Nucleolar transcription 54.3 5.5 0.00019 25.4 1.5 19 58-76 45-63 (101)
14 3cbc_A Neutrophil gelatinase-a 54.1 9.6 0.00033 25.5 2.8 27 53-79 155-182 (198)
15 4g9s_B Inhibitor of G-type lys 52.2 4.6 0.00016 26.0 0.9 16 68-83 74-89 (111)
16 3u2b_C Transcription factor SO 51.8 4.9 0.00017 23.7 0.9 18 59-76 42-59 (79)
17 2e6o_A HMG box-containing prot 51.4 5 0.00017 24.6 0.9 18 59-76 57-74 (87)
18 1e5p_A Aphrodisin; lipocalin, 51.4 12 0.00041 23.8 2.8 24 55-78 111-135 (151)
19 2a2u_A Protein (alpha-2U-globu 50.7 13 0.00045 24.1 3.0 28 52-79 135-163 (181)
20 1wgf_A Upstream binding factor 50.2 5.3 0.00018 24.6 0.9 18 59-76 60-77 (90)
21 1aab_A High mobility group pro 49.9 4.8 0.00017 24.2 0.7 18 59-76 49-66 (83)
22 2xst_A Lipocalin 15; transport 49.8 13 0.00045 23.4 2.8 27 52-78 119-146 (161)
23 3f27_D Transcription factor SO 49.1 5.7 0.0002 23.7 0.9 18 59-76 46-63 (83)
24 1bj7_A D 2; allergen, lipocali 48.9 9.8 0.00033 24.5 2.1 24 55-78 116-140 (156)
25 2cto_A Novel protein; high mob 48.6 5.8 0.0002 25.6 0.9 19 58-76 50-68 (93)
26 2co9_A Thymus high mobility gr 48.1 7.9 0.00027 24.5 1.5 18 59-76 57-74 (102)
27 1ckt_A High mobility group 1 p 46.4 2.7 9.1E-05 24.4 -0.9 18 59-76 43-60 (71)
28 4euw_A Transcription factor SO 45.8 8.9 0.0003 24.5 1.5 18 59-76 69-86 (106)
29 2yqk_A Arginine-glutamic acid 45.0 14 0.00049 21.9 2.3 27 55-81 6-34 (63)
30 2hzq_A Apolipoprotein D, APO-D 44.9 17 0.00057 23.9 2.8 27 52-78 123-150 (174)
31 1l6x_B Minimized B-domain of p 44.8 14 0.00049 21.0 2.1 18 59-76 16-33 (34)
32 3o22_A Prostaglandin-H2 D-isom 44.1 18 0.00061 23.3 2.8 25 54-78 119-144 (162)
33 1qwd_A Outer membrane lipoprot 43.7 17 0.00059 24.6 2.8 27 52-78 137-164 (177)
34 2jr5_A UPF0350 protein VC_2471 43.2 17 0.00058 23.6 2.6 19 59-77 34-52 (94)
35 1v64_A Nucleolar transcription 43.0 7.9 0.00027 25.0 0.9 19 58-76 52-70 (108)
36 1lf7_A Complement protein C8ga 43.0 18 0.00063 24.0 2.8 26 54-79 129-155 (182)
37 2crj_A SWI/SNF-related matrix- 42.0 6.4 0.00022 24.3 0.3 18 59-76 47-64 (92)
38 1epa_A Epididymal retinoic aci 41.8 21 0.0007 22.8 2.8 27 52-78 113-140 (164)
39 1cg7_A Protein (NON histone pr 41.6 7.6 0.00026 24.1 0.7 18 59-76 60-77 (93)
40 1exs_A Beta-lactoglobulin; lip 41.1 23 0.00079 22.7 3.0 28 53-80 119-147 (160)
41 2l5p_A Lipocalin 12; beta barr 40.7 21 0.00072 23.7 2.8 26 53-78 130-156 (184)
42 1beb_A Beta-lactoglobulin; lip 40.0 25 0.00084 22.5 3.0 31 53-83 119-150 (162)
43 1i11_A Transcription factor SO 39.6 5.6 0.00019 23.8 -0.2 19 58-76 43-61 (81)
44 1ew3_A Allergen EQU C 1; lipoc 39.6 23 0.0008 22.4 2.8 25 55-79 116-141 (159)
45 4dzg_A PLIG; lysozyme inhibito 39.4 9.4 0.00032 25.1 0.9 17 69-85 78-94 (114)
46 3s26_A Neutrophil gelatinase-a 38.8 23 0.00079 23.8 2.8 25 55-79 139-164 (190)
47 3bx8_A Engineered human lipoca 38.3 24 0.00084 23.0 2.8 26 53-78 135-161 (178)
48 1i4u_A Crustacyanin; lipocalin 38.2 24 0.00082 23.6 2.8 27 52-78 132-159 (181)
49 1zda_A Mini protein A domain, 37.7 15 0.0005 21.4 1.4 18 59-76 21-38 (38)
50 1x60_A Sporulation-specific N- 36.9 42 0.0014 19.5 3.5 12 74-85 41-52 (79)
51 1ltl_A DNA replication initiat 36.8 7.3 0.00025 28.7 0.0 25 57-81 252-276 (279)
52 3ebw_A PER A 4 allergen; beta 36.5 27 0.00092 23.2 2.8 27 52-78 120-147 (163)
53 1l8y_A Upstream binding factor 36.1 8.6 0.00029 25.1 0.3 19 58-76 42-60 (91)
54 1uta_A FTSN, MSGA, cell divisi 35.9 39 0.0013 20.0 3.2 11 74-84 41-51 (81)
55 1x6i_A Hypothetical protein YG 35.7 20 0.00068 23.0 2.0 19 59-77 36-54 (91)
56 1s21_A ORF2; predominantly bet 35.7 22 0.00074 27.0 2.4 22 46-71 35-56 (206)
57 1hme_A High mobility group pro 35.4 5.4 0.00018 23.5 -0.7 18 59-76 46-63 (77)
58 1gka_B Crustacyanin A2 subunit 34.8 17 0.00059 23.5 1.6 27 52-78 129-156 (174)
59 1pgv_A TMD-1, tropomodulin TMD 34.7 31 0.0011 24.6 3.0 29 48-76 97-125 (197)
60 2hlv_A Odorant-binding protein 34.1 32 0.0011 22.1 2.8 28 52-79 115-143 (160)
61 2ba3_A NIKA; dimer, bacterial 34.0 16 0.00055 20.2 1.2 18 60-77 21-38 (51)
62 3sao_A Extracellular fatty aci 33.8 35 0.0012 22.1 3.0 24 55-78 113-137 (160)
63 1kxo_A DIGA16; lipocalin, anti 33.7 32 0.0011 22.9 2.8 27 52-78 127-155 (184)
64 1puz_A Conserved hypothetical 33.6 17 0.00059 22.9 1.4 19 59-77 36-54 (82)
65 2eqr_A N-COR1, N-COR, nuclear 33.3 29 0.001 20.2 2.3 19 57-75 11-29 (61)
66 3u6x_S ORF48; helix/beta, rece 33.0 21 0.00071 24.5 1.8 16 20-35 1-16 (105)
67 1gm6_A SAL, salivary lipocalin 32.4 38 0.0013 22.2 3.0 27 53-79 120-147 (175)
68 1k99_A Upstream binding factor 30.2 8.3 0.00028 24.4 -0.6 18 59-76 50-67 (99)
69 2ra6_A Trichosurin; lipocalin, 30.1 45 0.0015 21.4 3.0 27 52-78 125-152 (166)
70 2hp0_A IDS-epimerase; MMGE/PRP 29.7 67 0.0023 25.6 4.5 34 39-73 398-437 (466)
71 2zet_C Melanophilin; complex, 29.3 23 0.00077 24.8 1.5 18 59-76 15-32 (153)
72 2yrq_A High mobility group pro 29.2 18 0.0006 24.4 0.9 18 59-76 57-74 (173)
73 1whz_A Hypothetical protein; a 29.2 36 0.0012 19.9 2.2 17 67-83 8-24 (70)
74 1z24_A Insecticyanin A form; b 28.7 40 0.0014 22.5 2.7 27 52-78 131-160 (189)
75 2gzk_A Sex-determining region 28.3 19 0.00065 23.8 0.9 19 58-76 127-145 (159)
76 3fiq_A OBP1, RCG36470, odorant 27.9 61 0.0021 21.2 3.4 23 56-78 118-141 (157)
77 3kff_A MUP 4, major urinary pr 27.4 48 0.0016 21.4 2.8 24 55-78 119-143 (162)
78 1w6v_A Ubiquitin carboxyl-term 26.6 43 0.0015 22.6 2.5 43 24-81 7-54 (141)
79 2ivy_A Hypothetical protein SS 26.0 53 0.0018 21.0 2.8 20 62-81 13-32 (101)
80 2lm4_A Succinate dehydrogenase 25.8 28 0.00095 23.4 1.4 19 59-77 51-69 (109)
81 2yuk_A Myeloid/lymphoid or mix 25.7 23 0.00078 22.8 0.9 18 59-76 60-77 (90)
82 2q2e_A Type II DNA topoisomera 25.3 18 0.00063 28.0 0.5 57 22-78 246-322 (369)
83 2jxp_A Putative lipoprotein B; 24.3 41 0.0014 22.4 2.1 33 34-70 1-36 (155)
84 2y9f_A LSL-150, hemolytic lect 24.1 30 0.001 25.1 1.4 13 74-86 104-116 (150)
85 2w9y_A CE-FAR-7, fatty acid/re 24.1 19 0.00065 25.5 0.3 17 59-75 25-41 (140)
86 1io0_A Tropomodulin; LRR prote 23.9 85 0.0029 20.5 3.6 25 49-73 121-147 (185)
87 2ns0_A Hypothetical protein; r 23.3 29 0.00098 22.8 1.1 10 76-85 74-83 (85)
88 1kt6_A RBP, plasma retinol-bin 23.1 34 0.0012 22.3 1.5 24 55-78 136-160 (183)
89 3c0w_A Intron-encoded endonucl 23.0 86 0.0029 23.0 3.7 36 52-87 158-204 (235)
90 3qkg_A Protein AMBP; beta barr 22.8 63 0.0021 21.8 2.8 24 55-78 131-155 (193)
91 2crg_A Metastasis associated p 22.5 59 0.002 19.6 2.4 25 57-81 7-33 (70)
92 3i5g_C Myosin catalytic light 22.4 49 0.0017 21.3 2.1 14 59-72 1-14 (159)
93 1xki_A VON ebner'S gland prote 21.9 27 0.00092 22.5 0.7 25 54-78 110-135 (162)
94 3lay_A Zinc resistance-associa 21.8 45 0.0015 23.8 1.9 16 59-74 66-81 (175)
95 1pgv_A TMD-1, tropomodulin TMD 21.0 41 0.0014 23.9 1.6 29 48-76 69-97 (197)
96 1q7h_A Conserved hypothetical 20.9 53 0.0018 21.8 2.0 27 57-83 3-36 (153)
No 1
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=66.26 E-value=2.3 Score=24.72 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=15.8
Q ss_pred ccCCHHHHHHHHHHhhcC
Q 034556 59 NAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~D 76 (91)
+.||++||..|++.++.|
T Consensus 38 k~ls~~eK~~y~~~A~~~ 55 (67)
T 3fgh_A 38 KNLSDSEKELYIQHAKED 55 (67)
T ss_dssp HTCCHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHH
Confidence 579999999999998765
No 2
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.86 E-value=4.4 Score=25.20 Aligned_cols=18 Identities=11% Similarity=0.344 Sum_probs=16.8
Q ss_pred ccCCHHHHHHHHHHhhcC
Q 034556 59 NAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~D 76 (91)
+.||++||..|++.++.|
T Consensus 46 k~ls~eeK~~y~~~A~~d 63 (81)
T 2d7l_A 46 RVLSTEERKVWANKAKGE 63 (81)
T ss_dssp SSSCHHHHHHHHHHTTSS
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 679999999999999988
No 3
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.81 E-value=4.1 Score=25.21 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=16.4
Q ss_pred ccCCHHHHHHHHHHhhcC
Q 034556 59 NAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~D 76 (91)
+.||++||..|++.++.|
T Consensus 47 k~ls~eeK~~y~~~A~~~ 64 (92)
T 2cs1_A 47 KTLSEEEKLKYEEKATKD 64 (92)
T ss_dssp HSSCHHHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHHHHH
Confidence 579999999999999876
No 4
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=58.30 E-value=3.8 Score=24.63 Aligned_cols=18 Identities=17% Similarity=0.449 Sum_probs=15.7
Q ss_pred ccCCHHHHHHHHHHhhcC
Q 034556 59 NAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~D 76 (91)
+.||++||+.|++.++.|
T Consensus 47 k~ls~~eK~~y~~~A~~~ 64 (82)
T 1wz6_A 47 AVLDPKEKQKYTDMAKEY 64 (82)
T ss_dssp HTCCHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHH
Confidence 579999999999998764
No 5
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.41 E-value=4 Score=24.87 Aligned_cols=18 Identities=28% Similarity=0.617 Sum_probs=15.8
Q ss_pred ccCCHHHHHHHHHHhhcC
Q 034556 59 NAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~D 76 (91)
+.||++||..|++.++.|
T Consensus 57 k~ls~~eK~~y~~~A~~~ 74 (86)
T 2eqz_A 57 KTMSGKEKSKFDEMAKAD 74 (86)
T ss_dssp HSSCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHH
Confidence 579999999999998765
No 6
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=57.08 E-value=3.6 Score=23.66 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=15.6
Q ss_pred ccCCHHHHHHHHHHhhcC
Q 034556 59 NAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~D 76 (91)
+.||++||..|++.++.|
T Consensus 42 k~ls~~eK~~y~~~A~~~ 59 (71)
T 4a3n_A 42 KALTLAEKRPFVEEAERL 59 (71)
T ss_dssp HHSCHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHH
Confidence 579999999999988754
No 7
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=57.05 E-value=4.1 Score=23.97 Aligned_cols=18 Identities=11% Similarity=0.054 Sum_probs=15.5
Q ss_pred ccCCHHHHHHHHHHhhcC
Q 034556 59 NAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~D 76 (91)
+.||++||..|++.++.|
T Consensus 44 k~ls~~eK~~y~~~A~~~ 61 (76)
T 1hry_A 44 KMLTEAEKWPFFQEAQKL 61 (76)
T ss_dssp HTCCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHH
Confidence 578999999999998764
No 8
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=56.74 E-value=4.9 Score=23.91 Aligned_cols=18 Identities=17% Similarity=0.150 Sum_probs=15.7
Q ss_pred ccCCHHHHHHHHHHhhcC
Q 034556 59 NAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~D 76 (91)
+.||++||..|++.++.|
T Consensus 42 k~ls~eeK~~y~~~A~~~ 59 (80)
T 1gt0_D 42 KLLSETEKRPFIDEAKRL 59 (80)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHH
Confidence 579999999999998764
No 9
>1dzk_A PIG OBP, odorant-binding protein; lipocalin, transport, olfaction, sensory transduction; HET: PRZ; 1.48A {Sus scrofa} SCOP: b.60.1.1 PDB: 1dzj_A* 1dzm_A* 1dzp_A* 1e00_A* 1e02_A* 1e06_A* 1hqp_A* 1a3y_A
Probab=56.51 E-value=8.8 Score=24.55 Aligned_cols=27 Identities=19% Similarity=0.458 Sum_probs=22.8
Q ss_pred ceeEeecc-cCCHHHHHHHHHHhhcCCe
Q 034556 52 TKLLFSRN-AFKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 52 tkLrlsRn-~lse~ek~kfkeL~~~Dgf 78 (91)
.-.-|+|. +++++.+++|+++++.=||
T Consensus 114 ~~~llsR~~~~~~e~~~~f~~~~~~~G~ 141 (157)
T 1dzk_A 114 MTGLLGKGTDIEDQDLEKFKEVTRENGI 141 (157)
T ss_dssp EEEEEESSSCCCHHHHHHHHHHHHHTTC
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 44567898 6999999999999998776
No 10
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=56.18 E-value=5 Score=24.36 Aligned_cols=19 Identities=11% Similarity=0.024 Sum_probs=16.2
Q ss_pred cccCCHHHHHHHHHHhhcC
Q 034556 58 RNAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 58 Rn~lse~ek~kfkeL~~~D 76 (91)
=+.||++||..|.+.++.|
T Consensus 43 Wk~ls~eeK~~y~~~A~~~ 61 (85)
T 1j46_A 43 WKMLTEAEKWPFFQEAQKL 61 (85)
T ss_dssp HTTSCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHH
Confidence 3679999999999998864
No 11
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=56.14 E-value=5.1 Score=24.33 Aligned_cols=18 Identities=28% Similarity=0.636 Sum_probs=15.8
Q ss_pred ccCCHHHHHHHHHHhhcC
Q 034556 59 NAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~D 76 (91)
+.||++||..|.+.++.|
T Consensus 42 k~ls~eeK~~y~~~A~~~ 59 (86)
T 2lef_A 42 HALSREEQAKYYELARKE 59 (86)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHH
Confidence 679999999999998764
No 12
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=54.55 E-value=2.9 Score=27.14 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=23.2
Q ss_pred cccccccccccccceeEeec-----------ccCCHHHHHHHHHH
Q 034556 39 NLLKISSHSVQTLTKLLFSR-----------NAFKREDKEKFEKL 72 (91)
Q Consensus 39 aRlk~~~~g~q~LtkLrlsR-----------n~lse~ek~kfkeL 72 (91)
.||...-+|.+..++..|.| |.||+||..+|--|
T Consensus 17 ~RLVP~~kG~R~Fs~iql~RL~kLGI~ktdP~~LT~eEi~~FaRL 61 (71)
T 2eo2_A 17 NRLVPLVNGVREFSEIQLSRLKKLGIHKTDPSTLTEEEVRKFARL 61 (71)
T ss_dssp HHHSCCSSSSCCCCHHHHHHHHHHTCCCCSTTTCCHHHHHHHHHT
T ss_pred HhhCCCCCCeeecCHHHHHHHHHcCCCCCCcccCCHHHHhhceec
Confidence 46666666666555444433 89999999999765
No 13
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=54.29 E-value=5.5 Score=25.44 Aligned_cols=19 Identities=21% Similarity=0.480 Sum_probs=16.2
Q ss_pred cccCCHHHHHHHHHHhhcC
Q 034556 58 RNAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 58 Rn~lse~ek~kfkeL~~~D 76 (91)
-+.||++||+.|++.++.|
T Consensus 45 Wk~ls~~eK~~Y~~~A~~~ 63 (101)
T 1v63_A 45 WQRISQSQKEHYKKLAEEQ 63 (101)
T ss_dssp HTTSCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHH
Confidence 3579999999999998765
No 14
>3cbc_A Neutrophil gelatinase-associated lipocalin; siderocalin, NGAL, enterobactin, glycoprotein, pyrroli carboxylic acid, secreted; HET: DBS; 2.17A {Homo sapiens} PDB: 3hwg_A* 3hwf_A* 3hwe_A* 3u03_A* 3u0d_A* 3cmp_A* 3i0a_A* 3hwd_A 3t1d_A* 3by0_A*
Probab=54.13 E-value=9.6 Score=25.46 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.0
Q ss_pred eeEeeccc-CCHHHHHHHHHHhhcCCeE
Q 034556 53 KLLFSRNA-FKREDKEKFEKLRKDDDFY 79 (91)
Q Consensus 53 kLrlsRn~-lse~ek~kfkeL~~~DgfY 79 (91)
-.-|+|.+ ++++.+++|+++++.=||-
T Consensus 155 ~~llsR~~~l~~e~~~~f~~~~~~~G~~ 182 (198)
T 3cbc_A 155 ITLYGRTKELTSELKENFIRFSKSLGLP 182 (198)
T ss_dssp EEEEESSSCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 34679987 9999999999999988774
No 15
>4g9s_B Inhibitor of G-type lysozyme, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Escherichia coli} PDB: 4dy3_A* 4dxz_A* 4dy5_A
Probab=52.22 E-value=4.6 Score=26.00 Aligned_cols=16 Identities=6% Similarity=-0.172 Sum_probs=13.0
Q ss_pred HHHHHhhcCCeEEEEe
Q 034556 68 KFEKLRKDDDFYLICY 83 (91)
Q Consensus 68 kfkeL~~~DgfYrIRv 83 (91)
.++-.|-.||-|+|||
T Consensus 74 ~~~~~LP~sG~Y~I~V 89 (111)
T 4g9s_B 74 HGQYSLPASGKYELRV 89 (111)
T ss_dssp TSCEECSSSEEEEEEE
T ss_pred eEEEEecCCccEEEEE
Confidence 3555688999999999
No 16
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=51.78 E-value=4.9 Score=23.70 Aligned_cols=18 Identities=22% Similarity=0.161 Sum_probs=15.5
Q ss_pred ccCCHHHHHHHHHHhhcC
Q 034556 59 NAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~D 76 (91)
+.||++||+.|.+.++.|
T Consensus 42 k~ls~~eK~~y~~~A~~~ 59 (79)
T 3u2b_C 42 KLLKDSDKIPFIQEAERL 59 (79)
T ss_dssp HHSCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHH
Confidence 579999999999998754
No 17
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=51.40 E-value=5 Score=24.56 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=15.6
Q ss_pred ccCCHHHHHHHHHHhhcC
Q 034556 59 NAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~D 76 (91)
+.||++||+.|++.++.|
T Consensus 57 k~ls~eeK~~y~~~A~~~ 74 (87)
T 2e6o_A 57 KKMKNEERRMYTLEAKAL 74 (87)
T ss_dssp HHSCHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHH
Confidence 578999999999998764
No 18
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1
Probab=51.38 E-value=12 Score=23.82 Aligned_cols=24 Identities=8% Similarity=0.290 Sum_probs=20.3
Q ss_pred Eeeccc-CCHHHHHHHHHHhhcCCe
Q 034556 55 LFSRNA-FKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 55 rlsRn~-lse~ek~kfkeL~~~Dgf 78 (91)
-|+|.+ ++++.+++|+++++.=||
T Consensus 111 llsR~~~l~~e~~~~f~~~~~~~G~ 135 (151)
T 1e5p_A 111 VAGKGNALTPEENEILVQFAHEKKI 135 (151)
T ss_dssp EEESSSCCCHHHHHHHHHHHHHTTC
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCC
Confidence 457774 899999999999998776
No 19
>2a2u_A Protein (alpha-2U-globulin); lipid binding protein; 2.50A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 2a2g_A
Probab=50.71 E-value=13 Score=24.07 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=23.6
Q ss_pred ceeEeecc-cCCHHHHHHHHHHhhcCCeE
Q 034556 52 TKLLFSRN-AFKREDKEKFEKLRKDDDFY 79 (91)
Q Consensus 52 tkLrlsRn-~lse~ek~kfkeL~~~DgfY 79 (91)
.-.-|+|+ .++++..++|+++++.=||-
T Consensus 135 ~~~llsR~~~~~~~~~~~f~~~~~~~G~~ 163 (181)
T 2a2u_A 135 LMVLYGRTKDLSSDIKEKFAKLCEAHGIT 163 (181)
T ss_dssp EEEEEESSSSCCHHHHHHHHHHHHTTTCC
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 34467998 69999999999999988875
No 20
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=50.17 E-value=5.3 Score=24.64 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=15.9
Q ss_pred ccCCHHHHHHHHHHhhcC
Q 034556 59 NAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~D 76 (91)
+.||++||+.|++.++.|
T Consensus 60 k~ls~eeK~~Y~~~A~~~ 77 (90)
T 1wgf_A 60 NDLSEKKKAKYKAREAAL 77 (90)
T ss_dssp HHSCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHH
Confidence 578999999999999875
No 21
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=49.89 E-value=4.8 Score=24.19 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=15.6
Q ss_pred ccCCHHHHHHHHHHhhcC
Q 034556 59 NAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~D 76 (91)
+.||++||..|.+.++.|
T Consensus 49 k~ls~~eK~~y~~~A~~~ 66 (83)
T 1aab_A 49 KTMSAKEKGKFEDMAKAD 66 (83)
T ss_dssp TTSCTTHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHH
Confidence 578999999999998765
No 22
>2xst_A Lipocalin 15; transport protein, LCN15, MSFL2541; 1.63A {Homo sapiens}
Probab=49.85 E-value=13 Score=23.38 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=22.4
Q ss_pred ceeEeeccc-CCHHHHHHHHHHhhcCCe
Q 034556 52 TKLLFSRNA-FKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 52 tkLrlsRn~-lse~ek~kfkeL~~~Dgf 78 (91)
.-.-|+|++ ++++..++|+++++.=||
T Consensus 119 ~~~llsR~~~~~~~~~~~~~~~~~~~G~ 146 (161)
T 2xst_A 119 MVQLYSRTQDVSPQALKSFQDFYPTLGL 146 (161)
T ss_dssp EEEEEESSSSCCHHHHHHHHHHGGGGTC
T ss_pred EEEEEccCCCCCHHHHHHHHHHHHHcCC
Confidence 346689985 799999999999988776
No 23
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=49.13 E-value=5.7 Score=23.70 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=15.6
Q ss_pred ccCCHHHHHHHHHHhhcC
Q 034556 59 NAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~D 76 (91)
+.||++||..|.+.++.|
T Consensus 46 k~ls~~eK~~y~~~A~~~ 63 (83)
T 3f27_D 46 KALTLAEKRPFVEEAERL 63 (83)
T ss_dssp HHSCHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHH
Confidence 579999999999998764
No 24
>1bj7_A D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: b.60.1.1
Probab=48.88 E-value=9.8 Score=24.45 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=20.2
Q ss_pred Eeeccc-CCHHHHHHHHHHhhcCCe
Q 034556 55 LFSRNA-FKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 55 rlsRn~-lse~ek~kfkeL~~~Dgf 78 (91)
-|+|.+ ++++.+++|+++++.=||
T Consensus 116 llsR~~~l~~e~~~~f~~~~~~~G~ 140 (156)
T 1bj7_A 116 GLAKGTSFTPEELEKYQQLNSERGV 140 (156)
T ss_dssp EEESSSCCCHHHHHHHHHHHHHHTC
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCC
Confidence 457775 899999999999987775
No 25
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.63 E-value=5.8 Score=25.63 Aligned_cols=19 Identities=21% Similarity=0.475 Sum_probs=16.0
Q ss_pred cccCCHHHHHHHHHHhhcC
Q 034556 58 RNAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 58 Rn~lse~ek~kfkeL~~~D 76 (91)
-+.||++||..|++.++.|
T Consensus 50 Wk~ls~eEK~pYe~~A~~~ 68 (93)
T 2cto_A 50 WALLREEEKEKYAEMAREW 68 (93)
T ss_dssp HHHSCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 3578999999999998764
No 26
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=48.06 E-value=7.9 Score=24.45 Aligned_cols=18 Identities=17% Similarity=0.363 Sum_probs=15.8
Q ss_pred ccCCHHHHHHHHHHhhcC
Q 034556 59 NAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~D 76 (91)
+.||++||..|++.++.|
T Consensus 57 k~ls~eeK~~Y~~~A~~~ 74 (102)
T 2co9_A 57 DGLGEEQKQVYKKKTEAA 74 (102)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 579999999999998764
No 27
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=46.38 E-value=2.7 Score=24.42 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=15.4
Q ss_pred ccCCHHHHHHHHHHhhcC
Q 034556 59 NAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~D 76 (91)
+.||++||..|++.++.|
T Consensus 43 k~ls~~eK~~y~~~A~~~ 60 (71)
T 1ckt_A 43 KTMSAKEKGKFEDMAKAD 60 (71)
T ss_dssp HTCCTTTSHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHH
Confidence 578999999999988765
No 28
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=45.82 E-value=8.9 Score=24.50 Aligned_cols=18 Identities=11% Similarity=0.150 Sum_probs=15.8
Q ss_pred ccCCHHHHHHHHHHhhcC
Q 034556 59 NAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~D 76 (91)
+.||++||+.|++.++.|
T Consensus 69 k~ls~eeK~~Y~~~A~~~ 86 (106)
T 4euw_A 69 RLLNESEKRPFVEEAERL 86 (106)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 679999999999998764
No 29
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.03 E-value=14 Score=21.90 Aligned_cols=27 Identities=15% Similarity=0.325 Sum_probs=19.7
Q ss_pred EeecccCCHHHHHHHHHHhhc--CCeEEE
Q 034556 55 LFSRNAFKREDKEKFEKLRKD--DDFYLI 81 (91)
Q Consensus 55 rlsRn~lse~ek~kfkeL~~~--DgfYrI 81 (91)
++.+++.|++|++.|++-++. .+|..|
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I 34 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYGKNFFRI 34 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTCSCHHHH
T ss_pred CcCCCCcCHHHHHHHHHHHHHhCccHHHH
Confidence 356789999999999987653 335444
No 30
>2hzq_A Apolipoprotein D, APO-D, APOD; lipocalin, beta barrel, bilin-binding protein, transport protein; HET: STR; 1.80A {Homo sapiens} PDB: 2hzr_A
Probab=44.95 E-value=17 Score=23.92 Aligned_cols=27 Identities=11% Similarity=0.335 Sum_probs=22.5
Q ss_pred ceeEeeccc-CCHHHHHHHHHHhhcCCe
Q 034556 52 TKLLFSRNA-FKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 52 tkLrlsRn~-lse~ek~kfkeL~~~Dgf 78 (91)
.-.-|+|++ ++++..++|+++++.=||
T Consensus 123 ~~~ilsR~~~~~~~~~~~~~~~~~~~G~ 150 (174)
T 2hzq_A 123 FAWILARNVALPPETVDSLKNILTSNNI 150 (174)
T ss_dssp EEEEEESSSCCCHHHHHHHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHcCC
Confidence 445789996 799999999999988775
No 31
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=44.82 E-value=14 Score=20.96 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.4
Q ss_pred ccCCHHHHHHHHHHhhcC
Q 034556 59 NAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~D 76 (91)
..|||++|+.|-+-+++|
T Consensus 16 ~nLtEeQrn~yI~slkdd 33 (34)
T 1l6x_B 16 PNLNEEQRNAKIKSIRDD 33 (34)
T ss_dssp TTCCHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHhHHHHHhcc
Confidence 468999999998888877
No 32
>3o22_A Prostaglandin-H2 D-isomerase; lipocalin, prostaglandin synthase; HET: OLA PLM; 1.40A {Homo sapiens} PDB: 3o19_A* 3o2y_A* 2wwp_A 2czt_A 2czu_A 2rq0_A 2e4j_A 2ktd_A*
Probab=44.08 E-value=18 Score=23.33 Aligned_cols=25 Identities=40% Similarity=0.535 Sum_probs=21.5
Q ss_pred eEeeccc-CCHHHHHHHHHHhhcCCe
Q 034556 54 LLFSRNA-FKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 54 LrlsRn~-lse~ek~kfkeL~~~Dgf 78 (91)
.-|+|.+ ++++.+++|+++++.=||
T Consensus 119 ~llsR~~~~~~~~~~~f~~~~~~~G~ 144 (162)
T 3o22_A 119 TLYSRTQTPRAELKEKFTAFCKAQGF 144 (162)
T ss_dssp EEEESSSSCCHHHHHHHHHHHHHTTC
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence 5678875 899999999999998776
No 33
>1qwd_A Outer membrane lipoprotein BLC; bacterial lipocalin, lipid binding protein; 1.75A {Escherichia coli} SCOP: b.60.1.1 PDB: 2aco_A* 3mbt_A
Probab=43.68 E-value=17 Score=24.64 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=22.9
Q ss_pred ceeEeeccc-CCHHHHHHHHHHhhcCCe
Q 034556 52 TKLLFSRNA-FKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 52 tkLrlsRn~-lse~ek~kfkeL~~~Dgf 78 (91)
.-.-|||++ ++++..++|++.++.-||
T Consensus 137 ~~wILsR~p~l~~~~~~~~~~~~~~~G~ 164 (177)
T 1qwd_A 137 YLWILSRTPTISDEVKQEMLAVATREGF 164 (177)
T ss_dssp CEEEEESSSSCCHHHHHHHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHcCC
Confidence 456789995 899999999999988876
No 34
>2jr5_A UPF0350 protein VC_2471; structure, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Vibrio cholerae}
Probab=43.16 E-value=17 Score=23.62 Aligned_cols=19 Identities=21% Similarity=0.545 Sum_probs=16.8
Q ss_pred ccCCHHHHHHHHHHhhcCC
Q 034556 59 NAFKREDKEKFEKLRKDDD 77 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~Dg 77 (91)
..||++|.+.|+.|+..++
T Consensus 34 ~~ls~~el~~f~~LL~~~D 52 (94)
T 2jr5_A 34 DSLTESEQDDFVALLESDD 52 (94)
T ss_dssp TTCCHHHHHHHHHHHTSCC
T ss_pred hcCCHHHHHHHHHHHcCCC
Confidence 5699999999999998765
No 35
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=43.05 E-value=7.9 Score=25.03 Aligned_cols=19 Identities=11% Similarity=0.305 Sum_probs=16.1
Q ss_pred cccCCHHHHHHHHHHhhcC
Q 034556 58 RNAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 58 Rn~lse~ek~kfkeL~~~D 76 (91)
-+.||++||..|++.++.|
T Consensus 52 Wk~Ls~~eK~~Y~~~A~~~ 70 (108)
T 1v64_A 52 WKLLSQKEKDAYHKKCDQK 70 (108)
T ss_dssp HHHSCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHH
Confidence 3579999999999998765
No 36
>1lf7_A Complement protein C8gamma; lipocalin, beta barrel, calyx, MAC, immune system; HET: CIT; 1.20A {Homo sapiens} SCOP: b.60.1.1 PDB: 1iw2_A* 2ovd_A* 2ove_A 2ova_A 2rd7_C 3ojy_C* 2qos_C
Probab=43.03 E-value=18 Score=23.96 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=21.7
Q ss_pred eEeecc-cCCHHHHHHHHHHhhcCCeE
Q 034556 54 LLFSRN-AFKREDKEKFEKLRKDDDFY 79 (91)
Q Consensus 54 LrlsRn-~lse~ek~kfkeL~~~DgfY 79 (91)
--|+|. .++++.+++|+++++.=||=
T Consensus 129 ~llsR~p~l~~e~~~~f~~~~~~~G~~ 155 (182)
T 1lf7_A 129 KLYARSLPVSDSVLSGFEQRVQEAHLT 155 (182)
T ss_dssp EEEESSSSCCHHHHHHHHHHHHHTTCC
T ss_pred EEEccCCCCCHHHHHHHHHHHHHcCCC
Confidence 456887 48999999999999988873
No 37
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=41.97 E-value=6.4 Score=24.29 Aligned_cols=18 Identities=6% Similarity=0.320 Sum_probs=15.4
Q ss_pred ccCCHHHHHHHHHHhhcC
Q 034556 59 NAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~D 76 (91)
+.||++||..|++.++.|
T Consensus 47 k~ls~eeK~~Y~~~A~~~ 64 (92)
T 2crj_A 47 SKLQPAEKQRYLDEAEKE 64 (92)
T ss_dssp HTCCTTHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 578999999999998764
No 38
>1epa_A Epididymal retinoic acid-binding protein; 2.10A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 1epb_A*
Probab=41.75 E-value=21 Score=22.76 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=22.9
Q ss_pred ceeEeeccc-CCHHHHHHHHHHhhcCCe
Q 034556 52 TKLLFSRNA-FKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 52 tkLrlsRn~-lse~ek~kfkeL~~~Dgf 78 (91)
.-.-|+|++ ++++..++|+++++.=||
T Consensus 113 ~~~llsR~~~l~~~~~~~~~~~~~~~G~ 140 (164)
T 1epa_A 113 TMKLYSRSLDDNGEALYNFRKITSDHGF 140 (164)
T ss_dssp EEEEEESCSSCCHHHHHHHHHHHHHTTC
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence 345679985 799999999999998887
No 39
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=41.57 E-value=7.6 Score=24.06 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=15.7
Q ss_pred ccCCHHHHHHHHHHhhcC
Q 034556 59 NAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~D 76 (91)
+.||++||..|++.++.|
T Consensus 60 k~ls~eeK~~y~~~A~~~ 77 (93)
T 1cg7_A 60 KALTPEEKQPYEAKAQAD 77 (93)
T ss_dssp HTTHHHHHHHHHHHHTTH
T ss_pred HhCCHHHHHHHHHHHHHH
Confidence 578999999999998765
No 40
>1exs_A Beta-lactoglobulin; lipocalin fold, lipid-binding protein; 2.39A {Sus scrofa} SCOP: b.60.1.1
Probab=41.05 E-value=23 Score=22.67 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=22.6
Q ss_pred eeEeecc-cCCHHHHHHHHHHhhcCCeEE
Q 034556 53 KLLFSRN-AFKREDKEKFEKLRKDDDFYL 80 (91)
Q Consensus 53 kLrlsRn-~lse~ek~kfkeL~~~DgfYr 80 (91)
---|+|. .++++.+++|+++++.=||-.
T Consensus 119 ~~llsR~~~~~~e~~~~f~~~~~~~G~~~ 147 (160)
T 1exs_A 119 CQSLARTLEVDDQIREKFEDALKTLSVPM 147 (160)
T ss_dssp EEEEESSSCCCHHHHHHHHHHHTTSSSCE
T ss_pred EEEEecCCCCCHHHHHHHHHHHHhcCCCc
Confidence 3456787 589999999999999877643
No 41
>2l5p_A Lipocalin 12; beta barrel, transport protein; NMR {Rattus norvegicus}
Probab=40.68 E-value=21 Score=23.71 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=21.8
Q ss_pred eeEeecc-cCCHHHHHHHHHHhhcCCe
Q 034556 53 KLLFSRN-AFKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 53 kLrlsRn-~lse~ek~kfkeL~~~Dgf 78 (91)
-.-|+|+ .++++.+++|+++++.=||
T Consensus 130 ~~llsR~~~~~~e~~~~f~~~~~~~G~ 156 (184)
T 2l5p_A 130 VSLLGRDWKITHKTIDRFIALTKTQNL 156 (184)
T ss_dssp EEEEESSSCCCHHHHHHHHHHHHHTTC
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence 3568996 5999999999999987775
No 42
>1beb_A Beta-lactoglobulin; lipocalin, MILK WHEY protein, bovine, retinol-binding; 1.80A {Bos taurus} SCOP: b.60.1.1 PDB: 3nq3_A* 1b0o_A 1bsq_A 1gx8_A* 1gx9_A* 1gxa_A* 2gj5_A* 2r56_A* 3npo_A 1b8e_A* 3nq9_A* 3qzj_A* 3qzk_A* 3ueu_A* 3uev_A* 3uew_A* 3uex_A* 4dq3_A* 4dq4_A* 1qg5_A ...
Probab=39.99 E-value=25 Score=22.49 Aligned_cols=31 Identities=23% Similarity=0.139 Sum_probs=24.2
Q ss_pred eeEeecc-cCCHHHHHHHHHHhhcCCeEEEEe
Q 034556 53 KLLFSRN-AFKREDKEKFEKLRKDDDFYLICY 83 (91)
Q Consensus 53 kLrlsRn-~lse~ek~kfkeL~~~DgfYrIRv 83 (91)
---|+|. .++++.+++|+++++.=||=.-.+
T Consensus 119 ~~llsR~~~~~~~~~~~f~~~~~~~g~~~~~l 150 (162)
T 1beb_A 119 CQCLVRTPEVDDEALEKFDKALKALPMHIRLS 150 (162)
T ss_dssp EEEEESSSSCCHHHHHHHHHHHTTSCCCEEEE
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHCCCCHHHE
Confidence 3456787 589999999999999888755444
No 43
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=39.58 E-value=5.6 Score=23.78 Aligned_cols=19 Identities=11% Similarity=0.097 Sum_probs=15.6
Q ss_pred cccCCHHHHHHHHHHhhcC
Q 034556 58 RNAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 58 Rn~lse~ek~kfkeL~~~D 76 (91)
=+.||++||..|.+.++.|
T Consensus 43 Wk~ls~eeK~~y~~~A~~~ 61 (81)
T 1i11_A 43 WKAMTNLEKQPYYEEQARL 61 (81)
T ss_dssp HTTSCSGGGHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHH
Confidence 3678999999999888754
No 44
>1ew3_A Allergen EQU C 1; lipocalin, beta barrel; 2.30A {Equus caballus} SCOP: b.60.1.1
Probab=39.58 E-value=23 Score=22.45 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.9
Q ss_pred Eeecc-cCCHHHHHHHHHHhhcCCeE
Q 034556 55 LFSRN-AFKREDKEKFEKLRKDDDFY 79 (91)
Q Consensus 55 rlsRn-~lse~ek~kfkeL~~~DgfY 79 (91)
-|+|. .++++..++|+++++.=||-
T Consensus 116 llsR~~~~~~~~~~~f~~~~~~~G~~ 141 (159)
T 1ew3_A 116 FYAREPDVSPEIKEEFVKIVQKRGIV 141 (159)
T ss_dssp EEESSSSCCHHHHHHHHHHHHHTTCC
T ss_pred EEcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 67888 58999999999999998875
No 45
>4dzg_A PLIG; lysozyme inhibitor, G-type lysozyme binding, hydrolase inhib; HET: MLY; 2.02A {Aeromonas hydrophila subsp}
Probab=39.35 E-value=9.4 Score=25.15 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=11.9
Q ss_pred HHHHhhcCCeEEEEeec
Q 034556 69 FEKLRKDDDFYLICYLA 85 (91)
Q Consensus 69 fkeL~~~DgfYrIRvPs 85 (91)
+.-.+-.+|.|+|||=.
T Consensus 78 ~~g~LP~sG~Y~i~V~~ 94 (114)
T 4dzg_A 78 WQGALPASGXYLIQVYQ 94 (114)
T ss_dssp CEEECSSCC-CEEEEEC
T ss_pred EEEEecCCCcEEEEEEe
Confidence 33357889999999854
No 46
>3s26_A Neutrophil gelatinase-associated lipocalin; beta-barrel, siderophore binding protein, N-linked glycosyla secreted, transport protein; HET: NAG BMA MAN; 1.80A {Mus musculus} SCOP: b.60.1.1 PDB: 2k23_A
Probab=38.77 E-value=23 Score=23.85 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=21.6
Q ss_pred Eeeccc-CCHHHHHHHHHHhhcCCeE
Q 034556 55 LFSRNA-FKREDKEKFEKLRKDDDFY 79 (91)
Q Consensus 55 rlsRn~-lse~ek~kfkeL~~~DgfY 79 (91)
-|+|.+ ++++.+++|+++++.=||=
T Consensus 139 llsR~~~l~~e~~~~f~~~~~~~G~~ 164 (190)
T 3s26_A 139 LYGRTKELSPELKERFTRFAKSLGLK 164 (190)
T ss_dssp EEESSSCCCHHHHHHHHHHHHHTTCC
T ss_pred EecCCCCCCHHHHHHHHHHHHHcCCC
Confidence 568875 8999999999999988874
No 47
>3bx8_A Engineered human lipocalin 2; protein design, ligand binding protein, de novo protein, protein binding; HET: 1PE PE5; 2.00A {Homo sapiens} PDB: 3bx7_A* 3dtq_A 3dsz_A* 1l6m_A* 3tf6_A* 1x71_A* 1x89_A* 1x8u_A* 3fw4_A 3fw5_A 3k3l_A* 3pec_A* 3ped_A* 3tzs_A* 1ngl_A 1dfv_A* 1qqs_A*
Probab=38.27 E-value=24 Score=23.02 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=22.6
Q ss_pred eeEeeccc-CCHHHHHHHHHHhhcCCe
Q 034556 53 KLLFSRNA-FKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 53 kLrlsRn~-lse~ek~kfkeL~~~Dgf 78 (91)
-.-|+|.+ ++++..++|+++++.=||
T Consensus 135 ~~llsR~~~l~~~~~~~~~~~~~~~G~ 161 (178)
T 3bx8_A 135 ITIYGRTKELASELKENFIRFSKSLGL 161 (178)
T ss_dssp EEEEESSSCCCHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHcCC
Confidence 36789985 799999999999998887
No 48
>1i4u_A Crustacyanin; lipocalin fold, antiparallel beta barrel, transport protein; 1.15A {Synthetic} SCOP: b.60.1.1 PDB: 1obq_A 1obu_A 1s2p_A 1h91_A 1gka_A 1s44_A
Probab=38.20 E-value=24 Score=23.57 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=23.0
Q ss_pred ceeEeeccc-CCHHHHHHHHHHhhcCCe
Q 034556 52 TKLLFSRNA-FKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 52 tkLrlsRn~-lse~ek~kfkeL~~~Dgf 78 (91)
.-.-|+|++ ++++..++|+++++.=||
T Consensus 132 ~~~iLsR~~~~~~~~~~~~~~~~~~~G~ 159 (181)
T 1i4u_A 132 FSFIFSRSANLADQYVKKCEAAFKNINV 159 (181)
T ss_dssp EEEEEESSSSCCHHHHHHHHHHHHHTTC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHcCC
Confidence 456789997 899999999999988775
No 49
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=37.69 E-value=15 Score=21.37 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=14.9
Q ss_pred ccCCHHHHHHHHHHhhcC
Q 034556 59 NAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~D 76 (91)
..||||+|+.|-+-+++|
T Consensus 21 ~nLtEeQrn~yI~slkdd 38 (38)
T 1zda_A 21 PNLNEEQRNAKIKSIRDD 38 (38)
T ss_dssp SSSCTTHHHHHHHHHSCC
T ss_pred CCCCHHHHHhHHHHhhcC
Confidence 458999999998888776
No 50
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=36.91 E-value=42 Score=19.48 Aligned_cols=12 Identities=25% Similarity=0.249 Sum_probs=9.3
Q ss_pred hcCCeEEEEeec
Q 034556 74 KDDDFYLICYLA 85 (91)
Q Consensus 74 ~~DgfYrIRvPs 85 (91)
..+++|||||..
T Consensus 41 ~~~~~yRV~vGp 52 (79)
T 1x60_A 41 LKDGLYKVQIGA 52 (79)
T ss_dssp EETTEEEEEEEE
T ss_pred cCCcEEEEEECC
Confidence 367899999853
No 51
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=36.78 E-value=7.3 Score=28.66 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=0.0
Q ss_pred ecccCCHHHHHHHHHHhhcCCeEEE
Q 034556 57 SRNAFKREDKEKFEKLRKDDDFYLI 81 (91)
Q Consensus 57 sRn~lse~ek~kfkeL~~~DgfYrI 81 (91)
+...+|++|.++|+++++..+.|.+
T Consensus 252 ~~~~~t~ed~~~i~~ls~~~~iy~~ 276 (279)
T 1ltl_A 252 EELQISEEDEEKIKELAGDPNIYEK 276 (279)
T ss_dssp -------------------------
T ss_pred ccCCCCHHHHHHHHHHhcCCCHHHH
Confidence 3457999999999999999998863
No 52
>3ebw_A PER A 4 allergen; beta barrel, cockroach; HET: PE4; 2.80A {Periplaneta americana}
Probab=36.50 E-value=27 Score=23.22 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=22.3
Q ss_pred ceeEeeccc-CCHHHHHHHHHHhhcCCe
Q 034556 52 TKLLFSRNA-FKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 52 tkLrlsRn~-lse~ek~kfkeL~~~Dgf 78 (91)
.-.-|||.+ ++++.+++|+++++.=||
T Consensus 120 ~~wilsR~~~l~~~~~~~~~~~~~~~G~ 147 (163)
T 3ebw_A 120 LYWIASHETSFDDATKAKVNEVLAPYNL 147 (163)
T ss_dssp EEEEEESSSSCCHHHHHHHHHHHGGGTC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 345678886 799999999999998776
No 53
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=36.11 E-value=8.6 Score=25.07 Aligned_cols=19 Identities=21% Similarity=0.330 Sum_probs=16.2
Q ss_pred cccCCHHHHHHHHHHhhcC
Q 034556 58 RNAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 58 Rn~lse~ek~kfkeL~~~D 76 (91)
-+.||++||..|++.++.|
T Consensus 42 Wk~ls~~eK~pye~kA~~d 60 (91)
T 1l8y_A 42 WNNMEKKEKLMWIKKAAED 60 (91)
T ss_dssp HHTTGGGHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHH
Confidence 3578999999999998876
No 54
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=35.90 E-value=39 Score=20.02 Aligned_cols=11 Identities=0% Similarity=0.081 Sum_probs=9.0
Q ss_pred hcCCeEEEEee
Q 034556 74 KDDDFYLICYL 84 (91)
Q Consensus 74 ~~DgfYrIRvP 84 (91)
..+++|||||-
T Consensus 41 ~~~~~yRV~vG 51 (81)
T 1uta_A 41 TNNGWNRVVIG 51 (81)
T ss_dssp ECSSSEEEEES
T ss_pred eCCcEEEEEEC
Confidence 36889999994
No 55
>1x6i_A Hypothetical protein YGFY; structural genomics, transcriptional regulation, structure 2 function project, S2F, unknown function; 1.20A {Escherichia coli} PDB: 1x6j_A
Probab=35.69 E-value=20 Score=23.04 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=16.5
Q ss_pred ccCCHHHHHHHHHHhhcCC
Q 034556 59 NAFKREDKEKFEKLRKDDD 77 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~Dg 77 (91)
..||++|.+.|+.|+..++
T Consensus 36 ~~ls~~el~~f~~LL~~~D 54 (91)
T 1x6i_A 36 DSLSDDEKRIFIRLLECDD 54 (91)
T ss_dssp GGSCHHHHHHHHHHHTSCH
T ss_pred hhCCHHHHHHHHHHHcCCC
Confidence 5699999999999998764
No 56
>1s21_A ORF2; predominantly beta-strand, chaperone; 2.00A {Pseudomonas syringae PV} SCOP: d.166.1.4
Probab=35.68 E-value=22 Score=26.98 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=18.9
Q ss_pred ccccccceeEeecccCCHHHHHHHHH
Q 034556 46 HSVQTLTKLLFSRNAFKREDKEKFEK 71 (91)
Q Consensus 46 ~g~q~LtkLrlsRn~lse~ek~kfke 71 (91)
-|+++||++ +||+.++|++|-+
T Consensus 35 ~gg~~ltSV----~qLs~~~r~~fL~ 56 (206)
T 1s21_A 35 VGQYTLTSI----HQLSSEERENFLD 56 (206)
T ss_dssp TTCCCCCBG----GGSCHHHHHHHHH
T ss_pred cCCceecch----hhCCHHHHHHHHh
Confidence 378898876 7999999999976
No 57
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=35.42 E-value=5.4 Score=23.49 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=15.2
Q ss_pred ccCCHHHHHHHHHHhhcC
Q 034556 59 NAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~D 76 (91)
+.||++||..|++.++.|
T Consensus 46 k~ls~~eK~~y~~~A~~~ 63 (77)
T 1hme_A 46 NNTAADDKQPYEKKAAKL 63 (77)
T ss_dssp HHSCGGGSHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHH
Confidence 478999999999988764
No 58
>1gka_B Crustacyanin A2 subunit; lipocalin, lobster, astaxanthin, bathochromic, coloration; HET: AXT D12 EPE; 3.23A {Homarus gammarus} SCOP: b.60.1.1
Probab=34.78 E-value=17 Score=23.51 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=22.1
Q ss_pred ceeEeeccc-CCHHHHHHHHHHhhcCCe
Q 034556 52 TKLLFSRNA-FKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 52 tkLrlsRn~-lse~ek~kfkeL~~~Dgf 78 (91)
.-.-|+|++ ++++..++|+++++.=||
T Consensus 129 ~~~llsR~~~~~~~~~~~~~~~~~~~G~ 156 (174)
T 1gka_B 129 FAFVFSRTPQTSGPAVEKTAAVFNKNGV 156 (174)
T ss_dssp EEEEEESSCCSSSHHHHHHHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHcCC
Confidence 456789986 799999999999987664
No 59
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=34.67 E-value=31 Score=24.59 Aligned_cols=29 Identities=14% Similarity=0.014 Sum_probs=21.1
Q ss_pred ccccceeEeecccCCHHHHHHHHHHhhcC
Q 034556 48 VQTLTKLLFSRNAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 48 ~q~LtkLrlsRn~lse~ek~kfkeL~~~D 76 (91)
..+|++|.|+.|+++++--.++-+.++..
T Consensus 97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N 125 (197)
T 1pgv_A 97 SPSLRVLNVESNFLTPELLARLLRSTLVT 125 (197)
T ss_dssp CSSCCEEECCSSBCCHHHHHHHHHHTTTT
T ss_pred CCccCeEecCCCcCCHHHHHHHHHHHhhC
Confidence 46778888888888887777777766543
No 60
>2hlv_A Odorant-binding protein; domain swapping, transport protein; HET: LIK; 1.65A {Bos taurus} PDB: 1gt1_A* 1gt3_A* 1gt4_A* 1gt5_A* 1hn2_A* 1obp_A 1g85_A 1pbo_A*
Probab=34.14 E-value=32 Score=22.06 Aligned_cols=28 Identities=36% Similarity=0.444 Sum_probs=23.0
Q ss_pred ceeEeecc-cCCHHHHHHHHHHhhcCCeE
Q 034556 52 TKLLFSRN-AFKREDKEKFEKLRKDDDFY 79 (91)
Q Consensus 52 tkLrlsRn-~lse~ek~kfkeL~~~DgfY 79 (91)
.-.-|+|. +++++.+++|+++++.=||=
T Consensus 115 ~~~llsR~~~~~~e~~~~f~~~~~~~G~~ 143 (160)
T 2hlv_A 115 LTELFVKGLNVEDEDLEKFWKLTEDKGID 143 (160)
T ss_dssp EEEEEECSSSCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEEccCCCCCHHHHHHHHHHHHHcCCC
Confidence 34557885 69999999999999988875
No 61
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=33.96 E-value=16 Score=20.22 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.3
Q ss_pred cCCHHHHHHHHHHhhcCC
Q 034556 60 AFKREDKEKFEKLRKDDD 77 (91)
Q Consensus 60 ~lse~ek~kfkeL~~~Dg 77 (91)
-||++|++.+++.++.-|
T Consensus 21 Rlt~eE~~~l~~~A~~~g 38 (51)
T 2ba3_A 21 RFSPVEDETIRKKAEDSG 38 (51)
T ss_dssp EECHHHHHHHHHHHHHHT
T ss_pred EECHHHHHHHHHHHHHhC
Confidence 378999999999988655
No 62
>3sao_A Extracellular fatty acid-binding protein; beta-barrel, siderophore binding protein, transport protein; HET: NKN DBH; 1.80A {Gallus gallus} SCOP: b.60.1.1 PDB: 1jzu_A 2kt4_B* 2lbv_A*
Probab=33.79 E-value=35 Score=22.06 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=20.5
Q ss_pred Eeecc-cCCHHHHHHHHHHhhcCCe
Q 034556 55 LFSRN-AFKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 55 rlsRn-~lse~ek~kfkeL~~~Dgf 78 (91)
-++|. .++++.+++|+++++.=||
T Consensus 113 llsR~~~~~~e~~~~f~~~~~~~G~ 137 (160)
T 3sao_A 113 LYSRSREVSPTAMAIFRKLARERNY 137 (160)
T ss_dssp EEESSSSCCHHHHHHHHHHHHTTTC
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCC
Confidence 45776 5899999999999998886
No 63
>1kxo_A DIGA16; lipocalin, anticalin, genetical engineering, digoxigenin, ligand binding protein; 1.80A {Pieris brassicae} SCOP: b.60.1.1 PDB: 1lke_A* 1lnm_A* 1n0s_A* 1t0v_A 1bbp_A*
Probab=33.75 E-value=32 Score=22.94 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=22.3
Q ss_pred ceeEeeccc-CCHHHHHHHHHHhh-cCCe
Q 034556 52 TKLLFSRNA-FKREDKEKFEKLRK-DDDF 78 (91)
Q Consensus 52 tkLrlsRn~-lse~ek~kfkeL~~-~Dgf 78 (91)
.-.-|+|++ ++++..++|+++++ .-||
T Consensus 127 ~~wiLsR~~~~~~~~~~~~~~~~~~~~G~ 155 (184)
T 1kxo_A 127 LVWVLSRSMVLTGEAKTAVENYLIGSPVV 155 (184)
T ss_dssp EEEEEESSSSCCHHHHHHHHHHTTSCSSC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence 445789986 79999999999999 6665
No 64
>1puz_A Conserved hypothetical protein; NMA1147, MR19, structural genomics, PSI, protein structure initiative; NMR {Neisseria meningitidis} SCOP: a.218.1.1
Probab=33.61 E-value=17 Score=22.93 Aligned_cols=19 Identities=11% Similarity=0.289 Sum_probs=16.4
Q ss_pred ccCCHHHHHHHHHHhhcCC
Q 034556 59 NAFKREDKEKFEKLRKDDD 77 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~Dg 77 (91)
..||++|.+.|+.|+..++
T Consensus 36 ~~ls~~el~~f~~LL~~~D 54 (82)
T 1puz_A 36 EHLSDKELSEFSEILEFQD 54 (82)
T ss_dssp HHCCHHHHHHHHHHHTSCH
T ss_pred hcCCHHHHHHHHHHHcCCC
Confidence 4689999999999998764
No 65
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.32 E-value=29 Score=20.18 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=16.5
Q ss_pred ecccCCHHHHHHHHHHhhc
Q 034556 57 SRNAFKREDKEKFEKLRKD 75 (91)
Q Consensus 57 sRn~lse~ek~kfkeL~~~ 75 (91)
..++.|++|.+.|.+.++.
T Consensus 11 ~~~~WT~eE~~~F~~~~~~ 29 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQ 29 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 4689999999999998764
No 66
>3u6x_S ORF48; helix/beta, receptor binding complex, phage tail baseplate, protein; 2.60A {Lactococcus phage tp901-1}
Probab=32.98 E-value=21 Score=24.48 Aligned_cols=16 Identities=13% Similarity=0.123 Sum_probs=12.5
Q ss_pred ceeEEeecCCCCCCCC
Q 034556 20 AVQATHHHNTLPLPTN 35 (91)
Q Consensus 20 ~v~f~LEHs~ef~~ag 35 (91)
++.|.|||.+|..|.-
T Consensus 1 gf~~vlehdseyqpev 16 (105)
T 3u6x_S 1 GFKFVLEHDSEYQPEV 16 (105)
T ss_dssp CCEEEEEESCSSCCCE
T ss_pred CceEEEecCcccCCce
Confidence 4789999998877653
No 67
>1gm6_A SAL, salivary lipocalin; odorant-binding protein; HET: NAG; 2.13A {Sus scrofa} SCOP: b.60.1.1
Probab=32.38 E-value=38 Score=22.24 Aligned_cols=27 Identities=15% Similarity=0.274 Sum_probs=22.9
Q ss_pred eeEeecc-cCCHHHHHHHHHHhhcCCeE
Q 034556 53 KLLFSRN-AFKREDKEKFEKLRKDDDFY 79 (91)
Q Consensus 53 kLrlsRn-~lse~ek~kfkeL~~~DgfY 79 (91)
-.-|+|. .++++..++|+++++.=||=
T Consensus 120 ~~llsR~~~l~~e~~~~f~~~~~~~G~~ 147 (175)
T 1gm6_A 120 MEFYGRKPDVEPKLKDKFVEICQQYGII 147 (175)
T ss_dssp EEEEESSSCCCHHHHHHHHHHHHTTTCC
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 4457896 58999999999999988875
No 68
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=30.21 E-value=8.3 Score=24.36 Aligned_cols=18 Identities=11% Similarity=0.174 Sum_probs=15.1
Q ss_pred ccCCHHHHHHHHHHhhcC
Q 034556 59 NAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~D 76 (91)
+.||++||+.|++.++.|
T Consensus 50 k~ls~eeK~~Y~~~A~~~ 67 (99)
T 1k99_A 50 KELPEKKKMKYIQDFQRE 67 (99)
T ss_dssp HHSCSTTHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHH
Confidence 478999999999988764
No 69
>2ra6_A Trichosurin; lipocalin, beta barrel, glycoprotein, MILK protein, secreted, transport, transport protein; 1.50A {Trichosurus vulpecula} PDB: 2r73_A 2r74_A
Probab=30.06 E-value=45 Score=21.40 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=22.3
Q ss_pred ceeEeecc-cCCHHHHHHHHHHhhcCCe
Q 034556 52 TKLLFSRN-AFKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 52 tkLrlsRn-~lse~ek~kfkeL~~~Dgf 78 (91)
.-.-|+|+ .++++.+++|+++++.=||
T Consensus 125 ~~~llsR~~~~~~e~~~~f~~~~~~~G~ 152 (166)
T 2ra6_A 125 VANLFGRTPNLSNEIKKRFEEDFMNRGF 152 (166)
T ss_dssp EEEEEESSSCCCHHHHHHHHHHHHTTTC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 44567886 5899999999999988775
No 70
>2hp0_A IDS-epimerase; MMGE/PRPD fold, 6 helix bundle, chorismate mutase like, ISOM; HET: MSE CSO; 1.50A {Agrobacterium tumefaciens} PDB: 2hp3_A*
Probab=29.72 E-value=67 Score=25.60 Aligned_cols=34 Identities=6% Similarity=0.123 Sum_probs=24.0
Q ss_pred cccccccccccccceeE-e----ecccCCHHH-HHHHHHHh
Q 034556 39 NLLKISSHSVQTLTKLL-F----SRNAFKRED-KEKFEKLR 73 (91)
Q Consensus 39 aRlk~~~~g~q~LtkLr-l----sRn~lse~e-k~kfkeL~ 73 (91)
+|.....+.|+++ .-. . -+|++|.+| .+||+.++
T Consensus 398 ~~V~V~l~DG~~~-~~v~~p~G~p~~Pls~~~l~~KF~~~~ 437 (466)
T 2hp0_A 398 TDIVVHTADGKIE-RRIEATPGSLEDPMDDAHLERKFKDCT 437 (466)
T ss_dssp EEEEEEETTEEEE-EEECSCTTSTTSCCCHHHHHHHHHHHT
T ss_pred eEEEEEEcCCCEE-EEecCCCCCCCCCCCHHHHHHHHHHhc
Confidence 6666666666665 221 1 279999988 89999986
No 71
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=29.29 E-value=23 Score=24.79 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=15.5
Q ss_pred ccCCHHHHHHHHHHhhcC
Q 034556 59 NAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~D 76 (91)
+.|||+|++...+|++-|
T Consensus 15 s~LteeEr~~Il~VL~Rd 32 (153)
T 2zet_C 15 STLTDEEAEHVWAVVQRD 32 (153)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhH
Confidence 368999999999998765
No 72
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.24 E-value=18 Score=24.44 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=15.8
Q ss_pred ccCCHHHHHHHHHHhhcC
Q 034556 59 NAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~D 76 (91)
+.||++||+.|.+.++.|
T Consensus 57 k~ls~~eK~~y~~~A~~~ 74 (173)
T 2yrq_A 57 KTMSAKEKGKFEDMAKAD 74 (173)
T ss_dssp HHSCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHH
Confidence 579999999999998765
No 73
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=29.17 E-value=36 Score=19.89 Aligned_cols=17 Identities=12% Similarity=-0.009 Sum_probs=13.9
Q ss_pred HHHHHHhhcCCeEEEEe
Q 034556 67 EKFEKLRKDDDFYLICY 83 (91)
Q Consensus 67 ~kfkeL~~~DgfYrIRv 83 (91)
..+.++++.+||+.+|.
T Consensus 8 ~elik~L~~~G~~~~r~ 24 (70)
T 1whz_A 8 EEVARKLRRLGFVERMA 24 (70)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHCCCEEeCC
Confidence 45778889999998885
No 74
>1z24_A Insecticyanin A form; blue biliprotein, INS-A, chromophore binding., lipid binding protein; HET: BLV; 2.60A {Manduca sexta} SCOP: b.60.1.1
Probab=28.71 E-value=40 Score=22.46 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=22.2
Q ss_pred ceeEeeccc-CCHHHHHHHHHHhh--cCCe
Q 034556 52 TKLLFSRNA-FKREDKEKFEKLRK--DDDF 78 (91)
Q Consensus 52 tkLrlsRn~-lse~ek~kfkeL~~--~Dgf 78 (91)
.-.-|+|++ ++++..++|+++++ .=||
T Consensus 131 ~~~iLsR~~~~~~~~~~~~~~~~~~~~~G~ 160 (189)
T 1z24_A 131 HAWILSKSKVLEGNTKEVVDNVLKTFSHLI 160 (189)
T ss_dssp EEEEEESSSSCCTHHHHHHHHHHHTTTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcCC
Confidence 456789986 79999999999999 6665
No 75
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=28.27 E-value=19 Score=23.82 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=16.1
Q ss_pred cccCCHHHHHHHHHHhhcC
Q 034556 58 RNAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 58 Rn~lse~ek~kfkeL~~~D 76 (91)
=+.||++||+.+.+.++.|
T Consensus 127 Wk~ls~~eK~~y~~~A~~~ 145 (159)
T 2gzk_A 127 WNNTAADDKQPYEKKAAKL 145 (159)
T ss_dssp HHHSCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHH
Confidence 3679999999999988765
No 76
>3fiq_A OBP1, RCG36470, odorant-binding protein 1F; lipocalin, oderant-binding protein, transport protein; 1.60A {Rattus norvegicus} SCOP: b.60.1.0
Probab=27.91 E-value=61 Score=21.16 Aligned_cols=23 Identities=13% Similarity=0.387 Sum_probs=19.1
Q ss_pred eecc-cCCHHHHHHHHHHhhcCCe
Q 034556 56 FSRN-AFKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 56 lsRn-~lse~ek~kfkeL~~~Dgf 78 (91)
++|. .++++.+++|+++++.=|+
T Consensus 118 ygR~~~~s~e~~e~F~~~~~~~Gl 141 (157)
T 3fiq_A 118 AGKREDLNKAQKQELRKLAEEYNI 141 (157)
T ss_dssp EESSSCCCHHHHHHHHHHHHHTTC
T ss_pred EcCCCCCCHHHHHHHHHHHHHcCC
Confidence 4665 6999999999999987665
No 77
>3kff_A MUP 4, major urinary protein 4; pheromone, lipocalin, beta barrel, DI bond, pheromone-binding, secreted, transport, transport Pro; 0.96A {Mus musculus} SCOP: b.60.1.1 PDB: 3kfg_A 3kfh_A 3kfi_A 2l9c_A 2lb6_A 1i06_A 1i05_A* 1i04_A 1mup_A 1znd_A 1qy0_A* 1qy2_A* 1qy1_A 1zne_A 1zng_A 1znh_A 1znk_A* 1znl_A* 2dm5_A* 2ozq_A ...
Probab=27.37 E-value=48 Score=21.44 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=19.9
Q ss_pred Eeecc-cCCHHHHHHHHHHhhcCCe
Q 034556 55 LFSRN-AFKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 55 rlsRn-~lse~ek~kfkeL~~~Dgf 78 (91)
-|+|. .++++.+++|+++++.=||
T Consensus 119 ll~R~~~~~~~~~~~f~~~~~~~G~ 143 (162)
T 3kff_A 119 LYGRKADLNSDIKEKFVKLCEEHGI 143 (162)
T ss_dssp EEESSSCCCHHHHHHHHHHHHHTTC
T ss_pred EEcCCCCCCHHHHHHHHHHHHHcCC
Confidence 46776 4899999999999987775
No 78
>1w6v_A Ubiquitin carboxyl-terminal hydrolase 15; UCH, USP, DUB, deubiquitylation, deubiquitinating enzyme, ubiquitin specific protease; NMR {Homo sapiens} SCOP: d.324.1.1
Probab=26.58 E-value=43 Score=22.56 Aligned_cols=43 Identities=21% Similarity=0.389 Sum_probs=17.0
Q ss_pred EeecCCCCCCCCccccccccccccccccceeEeecccCCHHHHHHHHHHhh-----cCCeEEE
Q 034556 24 THHHNTLPLPTNTPQNLLKISSHSVQTLTKLLFSRNAFKREDKEKFEKLRK-----DDDFYLI 81 (91)
Q Consensus 24 ~LEHs~ef~~ag~FsaRlk~~~~g~q~LtkLrlsRn~lse~ek~kfkeL~~-----~DgfYrI 81 (91)
-++|++++.|.|.|+ +..|+. .. -+++|+..+++++ .|-+|-|
T Consensus 7 ~~~~~~~~~~~~~~~-----~~~~~~---------p~-~e~Qr~~I~~l~~~~l~~gd~~YlI 54 (141)
T 1w6v_A 7 HHHHSSGLVPRGSHM-----MAEGGA---------AD-LDTQRSDIATLLKTSLRKGDTWYLV 54 (141)
T ss_dssp --------------------CCCSSS---------CC-HHHHHHHHHHHHSSCCCTTCEEEEE
T ss_pred cccccccccCCCchh-----hccCCC---------CC-HHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 356789999999987 333331 12 2788888998874 4666765
No 79
>2ivy_A Hypothetical protein SSO1404; structural genomics, unknown function, CAS, RNAI, crispr; 1.4A {Sulfolobus solfataricus} SCOP: d.58.58.1 PDB: 2i8e_A
Probab=26.00 E-value=53 Score=21.02 Aligned_cols=20 Identities=10% Similarity=0.165 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHhhcCCeEEE
Q 034556 62 KREDKEKFEKLRKDDDFYLI 81 (91)
Q Consensus 62 se~ek~kfkeL~~~DgfYrI 81 (91)
++..+.+|.+.+...||.+|
T Consensus 13 ~~kr~~kv~k~L~~yGl~rv 32 (101)
T 2ivy_A 13 DDNLRNRVAEFLKKKGLDRI 32 (101)
T ss_dssp CHHHHHHHHHHHHHTTCEEE
T ss_pred ChHHHHHHHHHHHHhCChhc
Confidence 35788999999999999887
No 80
>2lm4_A Succinate dehydrogenase assembly factor 2, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Saccharomyces cerevisiae}
Probab=25.77 E-value=28 Score=23.39 Aligned_cols=19 Identities=21% Similarity=0.459 Sum_probs=16.6
Q ss_pred ccCCHHHHHHHHHHhhcCC
Q 034556 59 NAFKREDKEKFEKLRKDDD 77 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~Dg 77 (91)
..||++|.+.|+.|++.++
T Consensus 51 ~~ls~~el~~f~~LL~~~D 69 (109)
T 2lm4_A 51 KKMNEEELEEYDSLLNELD 69 (109)
T ss_dssp HHSCHHHHHHHHHHHTSCH
T ss_pred ccCCHHHHHHHHHHHcCCC
Confidence 4799999999999998764
No 81
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=25.69 E-value=23 Score=22.83 Aligned_cols=18 Identities=6% Similarity=0.290 Sum_probs=15.1
Q ss_pred ccCCHHHHHHHHHHhhcC
Q 034556 59 NAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~D 76 (91)
+.||++||..|++.++.|
T Consensus 60 k~ls~eeK~pY~~kA~~~ 77 (90)
T 2yuk_A 60 RKASSQERAPYVQKARDN 77 (90)
T ss_dssp HHSCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 578999999999988754
No 82
>2q2e_A Type II DNA topoisomerase VI subunit A; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=25.31 E-value=18 Score=28.00 Aligned_cols=57 Identities=12% Similarity=0.078 Sum_probs=37.2
Q ss_pred eEEeecCCCCCCCC---------------cccccc---cccccccc--ccceeEeecccCCHHHHHHHHHHhhcCCe
Q 034556 22 QATHHHNTLPLPTN---------------TPQNLL---KISSHSVQ--TLTKLLFSRNAFKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 22 ~f~LEHs~ef~~ag---------------~FsaRl---k~~~~g~q--~LtkLrlsRn~lse~ek~kfkeL~~~Dgf 78 (91)
.+|.-|..|+||.| ..+.++ ...|.|.. ++.+..+...+||+.|+.+++++++..-|
T Consensus 246 ~~pv~~l~D~Dp~Gi~I~~tyk~GS~~~~~~~~~l~~p~~~~lgm~~~d~~~~~~~~~~Lt~~D~k~l~~ll~~~~~ 322 (369)
T 2q2e_A 246 GIPVAVFTDGDPWSYRIYASVAYGAIKSAHLSEFMATPAAKFLGLQPSDIVEYELSTDKLTEQDVSALRSELSDPRF 322 (369)
T ss_dssp CCCEEEECCSSHHHHTTTHHHHSCC--------CCCCTTCBCCSSCTTTTTSSCCCCCCCCHHHHHHHTTTTSSCSS
T ss_pred CCcEEEEecCChhHHHHHHHHhccchhhhhhhcccCCCccEECCCCHHHHHhcccccCCCCHHHHHHHHHHhhCccc
Confidence 56777888899888 222222 24444433 45554566789999999999999876543
No 83
>2jxp_A Putative lipoprotein B; uncharacterized lipoprotein B, structure, northeast structural genomics consortium, NESG, PSI-2; NMR {Nitrosomonas europaea atcc 19718}
Probab=24.33 E-value=41 Score=22.38 Aligned_cols=33 Identities=3% Similarity=-0.031 Sum_probs=20.3
Q ss_pred CCccccccccccccccccceeEeec---ccCCHHHHHHHH
Q 034556 34 TNTPQNLLKISSHSVQTLTKLLFSR---NAFKREDKEKFE 70 (91)
Q Consensus 34 ag~FsaRlk~~~~g~q~LtkLrlsR---n~lse~ek~kfk 70 (91)
|| |+-||... ...+..|.+.- .+|+..-++.|+
T Consensus 1 CG-FhLrG~~~---~~~~~tl~v~~~~~~~l~~~l~~~L~ 36 (155)
T 2jxp_A 1 MG-FKLRGQVS---ELPFERVYITAPAGLTIGSDLERVIS 36 (155)
T ss_dssp CC-CCCCCCSS---CCSCCEEEEECSSCCHHHHHHHHHHH
T ss_pred CC-ceeCCCCC---CCCceEEEEecCCCcHHHHHHHHHHH
Confidence 67 88888643 23667777743 345556666665
No 84
>2y9f_A LSL-150, hemolytic lectin LSLA; sugar binding protein; 1.47A {Laetiporus sulphureus} PDB: 2y9g_A*
Probab=24.14 E-value=30 Score=25.12 Aligned_cols=13 Identities=0% Similarity=0.046 Sum_probs=10.8
Q ss_pred hcCCeEEEEeecc
Q 034556 74 KDDDFYLICYLAG 86 (91)
Q Consensus 74 ~~DgfYrIRvPsn 86 (91)
.-+|.||||+|+-
T Consensus 104 ~l~g~frLv~pst 116 (150)
T 2y9f_A 104 YLSKYFRLVQPST 116 (150)
T ss_dssp GGTTCEEEEETTT
T ss_pred cccceEEEEeecC
Confidence 4589999999984
No 85
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=24.07 E-value=19 Score=25.49 Aligned_cols=17 Identities=6% Similarity=0.259 Sum_probs=15.3
Q ss_pred ccCCHHHHHHHHHHhhc
Q 034556 59 NAFKREDKEKFEKLRKD 75 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~ 75 (91)
+.||++||..++||++.
T Consensus 25 ~~Lt~eeK~~Lkev~kn 41 (140)
T 2w9y_A 25 SSITADEKPVLHEVFQK 41 (140)
T ss_dssp HHCCTTTHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 56999999999999986
No 86
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=23.85 E-value=85 Score=20.54 Aligned_cols=25 Identities=8% Similarity=0.161 Sum_probs=13.0
Q ss_pred cccceeEe--ecccCCHHHHHHHHHHh
Q 034556 49 QTLTKLLF--SRNAFKREDKEKFEKLR 73 (91)
Q Consensus 49 q~LtkLrl--sRn~lse~ek~kfkeL~ 73 (91)
..|..|.| +.|.++++--..+.+.+
T Consensus 121 ~~L~~L~L~~~~N~i~~~g~~~l~~~L 147 (185)
T 1io0_A 121 TSLIELRIDNQSQPLGNNVEMEIANML 147 (185)
T ss_dssp SSCCEEECCCCSSCCCHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCCCHHHHHHHHHHH
Confidence 34555555 55555555555544443
No 87
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=23.32 E-value=29 Score=22.78 Aligned_cols=10 Identities=10% Similarity=-0.094 Sum_probs=8.7
Q ss_pred CCeEEEEeec
Q 034556 76 DDFYLICYLA 85 (91)
Q Consensus 76 DgfYrIRvPs 85 (91)
-|.||||+|.
T Consensus 74 rGpiRir~~~ 83 (85)
T 2ns0_A 74 RGPIRIRWTR 83 (85)
T ss_dssp CSCCEEEECC
T ss_pred CCCEEeecCC
Confidence 5999999986
No 88
>1kt6_A RBP, plasma retinol-binding protein; transport protein; HET: RTL; 1.10A {Bos taurus} SCOP: b.60.1.1 PDB: 1erb_A* 1fem_A* 1fen_A* 1hbp_A* 1fel_A* 1kt4_A* 1kt3_A* 1kt7_A* 1hbq_A 1aqb_A* 1kt5_A* 1rlb_E* 1rbp_A* 1brq_A 1brp_A* 1jyd_A 1jyj_A 2wqa_E* 3bsz_E* 1qab_E* ...
Probab=23.12 E-value=34 Score=22.32 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=20.5
Q ss_pred Eeeccc-CCHHHHHHHHHHhhcCCe
Q 034556 55 LFSRNA-FKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 55 rlsRn~-lse~ek~kfkeL~~~Dgf 78 (91)
-|+|++ ++++..++|.+.++..||
T Consensus 136 llsR~~~~~~~~~~~~~~~~~~~G~ 160 (183)
T 1kt6_A 136 VFARDPSGFSPEVQKIVRQRQEELC 160 (183)
T ss_dssp EEESSSSCCCHHHHHHHHHHHHHTT
T ss_pred EEEcCCCCCHHHHHHHHHHHHHcCC
Confidence 789997 489999999998887775
No 89
>3c0w_A Intron-encoded endonuclease I-SCEI; endonuclease, homing, ladlidadg, catalytic mechanism, metal binding; HET: DNA; 2.20A {Saccharomyces cerevisiae} PDB: 1r7m_A* 3c0x_A* 3ool_A 3oor_A
Probab=23.01 E-value=86 Score=22.99 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=30.9
Q ss_pred ceeEeecccCCHHHHHHHHHHhhcC-----------CeEEEEeeccc
Q 034556 52 TKLLFSRNAFKREDKEKFEKLRKDD-----------DFYLICYLAGC 87 (91)
Q Consensus 52 tkLrlsRn~lse~ek~kfkeL~~~D-----------gfYrIRvPsnv 87 (91)
..+.|+=+.||.+|...+.+++..- +-|+|.+++.-
T Consensus 158 ~gi~L~T~sFt~~ev~~L~~~L~~kf~L~~~i~~~~~~y~Iyi~~~s 204 (235)
T 3c0w_A 158 KSIVLNTQSFTFEEVEYLVKGLRNKFQLNCYVKINKNKPIIYIDSMS 204 (235)
T ss_dssp CCEEECCTTSCHHHHHHHHHHHHHHHCCCEEEEEETTEEEEEECGGG
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHHhcCeEEEEEecCCEEEEEEeHHH
Confidence 6799999999999999999998764 67899988653
No 90
>3qkg_A Protein AMBP; beta barrel, binding protein, bound chromophore, human plasm system; 2.30A {Homo sapiens}
Probab=22.81 E-value=63 Score=21.83 Aligned_cols=24 Identities=13% Similarity=0.300 Sum_probs=20.2
Q ss_pred Eeecc-cCCHHHHHHHHHHhhcCCe
Q 034556 55 LFSRN-AFKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 55 rlsRn-~lse~ek~kfkeL~~~Dgf 78 (91)
-|+|. .++++.+++|+++++.=||
T Consensus 131 llsR~~~l~~e~~~~f~~~~~~~G~ 155 (193)
T 3qkg_A 131 LYGRAPQLRETLLQDFRVVAQGVGI 155 (193)
T ss_dssp EEESSSCCCHHHHHHHHHHHHHTTC
T ss_pred EEcCCCCCCHHHHHHHHHHHHHcCC
Confidence 35776 5999999999999998776
No 91
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=22.53 E-value=59 Score=19.60 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=18.4
Q ss_pred ecccCCHHHHHHHHHHhhc--CCeEEE
Q 034556 57 SRNAFKREDKEKFEKLRKD--DDFYLI 81 (91)
Q Consensus 57 sRn~lse~ek~kfkeL~~~--DgfYrI 81 (91)
..+..|++|++.|++-++. -+|..|
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I 33 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGKDFNDI 33 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCSCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCccHHHH
Confidence 4578999999999987653 335544
No 92
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=22.45 E-value=49 Score=21.27 Aligned_cols=14 Identities=7% Similarity=0.408 Sum_probs=11.0
Q ss_pred ccCCHHHHHHHHHH
Q 034556 59 NAFKREDKEKFEKL 72 (91)
Q Consensus 59 n~lse~ek~kfkeL 72 (91)
++||+++.+.|+++
T Consensus 1 sqLt~eqi~elre~ 14 (159)
T 3i5g_C 1 SQLTKDEIEEVREV 14 (159)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 58899988877765
No 93
>1xki_A VON ebner'S gland protein; beta barrel, ligand binding protein, transport protein; 1.80A {Homo sapiens} SCOP: b.60.1.1 PDB: 3eyc_A
Probab=21.94 E-value=27 Score=22.54 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=21.2
Q ss_pred eEeecc-cCCHHHHHHHHHHhhcCCe
Q 034556 54 LLFSRN-AFKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 54 LrlsRn-~lse~ek~kfkeL~~~Dgf 78 (91)
--|+|. .++++.+++|+++++.=||
T Consensus 110 ~llsR~~~~~~e~~~~f~~~~~~~G~ 135 (162)
T 1xki_A 110 KLVGRDPKNNLEALEDFEKAAGARGL 135 (162)
T ss_dssp EEEESSSSCCCCCHHHHHHHHHHTTC
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence 457887 5899999999999988776
No 94
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.76 E-value=45 Score=23.84 Aligned_cols=16 Identities=13% Similarity=0.279 Sum_probs=12.8
Q ss_pred ccCCHHHHHHHHHHhh
Q 034556 59 NAFKREDKEKFEKLRK 74 (91)
Q Consensus 59 n~lse~ek~kfkeL~~ 74 (91)
..||+|++++++++.+
T Consensus 66 LnLT~EQq~ql~~I~~ 81 (175)
T 3lay_A 66 SPLTTEQQATAQKIYD 81 (175)
T ss_dssp --CCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHH
Confidence 5799999999999865
No 95
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=21.00 E-value=41 Score=23.93 Aligned_cols=29 Identities=10% Similarity=0.217 Sum_probs=22.6
Q ss_pred ccccceeEeecccCCHHHHHHHHHHhhcC
Q 034556 48 VQTLTKLLFSRNAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 48 ~q~LtkLrlsRn~lse~ek~kfkeL~~~D 76 (91)
..+|++|.|+.|+++++-..++.+.++..
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N 97 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETS 97 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHC
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcC
Confidence 45788888888888888888887777654
No 96
>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2
Probab=20.87 E-value=53 Score=21.78 Aligned_cols=27 Identities=4% Similarity=0.152 Sum_probs=20.4
Q ss_pred ecccCCHHHHHHHHHHhh-------cCCeEEEEe
Q 034556 57 SRNAFKREDKEKFEKLRK-------DDDFYLICY 83 (91)
Q Consensus 57 sRn~lse~ek~kfkeL~~-------~DgfYrIRv 83 (91)
+|++|+++|++++++-+. .|.++..|.
T Consensus 3 ~~~~L~~se~k~l~~~l~~~g~~~~~~~~~~~k~ 36 (153)
T 1q7h_A 3 SKHFISKKEAKRIWEQMSRYGIDITGESLEVAAQ 36 (153)
T ss_dssp CCEECCHHHHHHHHHHHHTTTCCCTTCCCEEEEC
T ss_pred ccccCCHHHHHHHHHHHHHcCCccCCCcEEEEEe
Confidence 688999999999988765 355565554
Done!