Query 034556
Match_columns 91
No_of_seqs 25 out of 27
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 06:11:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034556.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034556hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2lefa_ a.21.1.1 (A:) Lymphoid 59.5 1.9 0.00014 25.2 1.5 19 58-76 41-59 (86)
2 d1r7ma2 d.95.2.1 (A:121-225) D 55.4 6.9 0.0005 23.8 3.8 35 52-86 38-83 (105)
3 d1gt0d_ a.21.1.1 (D:) Sox-2 {M 53.0 2.8 0.00021 24.4 1.5 19 58-76 41-59 (80)
4 d1j46a_ a.21.1.1 (A:) SRY {Hum 51.6 3.1 0.00023 24.2 1.5 19 58-76 43-61 (85)
5 d1v63a_ a.21.1.1 (A:) Nucleola 49.1 3.5 0.00026 24.2 1.5 18 59-76 46-63 (101)
6 d1qwda_ b.60.1.1 (A:) Outer me 47.1 7.1 0.00052 23.6 2.8 23 56-78 132-155 (167)
7 d2fcta1 b.82.2.9 (A:3-310) Syr 46.1 6.4 0.00047 26.0 2.6 21 58-82 2-22 (308)
8 d1gt1a_ b.60.1.1 (A:) Odorant- 45.4 9.9 0.00072 22.8 3.3 29 50-78 112-140 (158)
9 d1wgfa_ a.21.1.1 (A:) Nucleola 44.2 3.5 0.00026 23.8 0.9 18 59-76 60-77 (90)
10 d2a1xa1 b.82.2.9 (A:43-338) Ph 42.4 3.2 0.00024 27.1 0.6 22 56-81 6-27 (296)
11 d1puza_ a.218.1.1 (A:) Hypothe 42.4 4.8 0.00035 23.8 1.4 19 59-77 36-54 (82)
12 d1lwma_ a.21.1.1 (A:) NHP6a {B 41.9 4.6 0.00033 23.7 1.2 19 58-76 59-77 (93)
13 d1x71a1 b.60.1.1 (A:4-177) Neu 41.9 10 0.00075 22.9 3.0 25 54-78 133-158 (174)
14 d1ckta_ a.21.1.1 (A:) High mob 39.6 1.9 0.00014 24.0 -0.9 19 58-76 42-60 (71)
15 d1kxoa_ b.60.1.1 (A:) Bilin-bi 39.3 9.9 0.00072 22.9 2.6 24 55-78 130-155 (171)
16 d1i11a_ a.21.1.1 (A:) Sox-5 {M 38.8 2.8 0.0002 23.6 -0.2 19 58-76 41-59 (70)
17 d1jcea1 c.55.1.1 (A:4-140) Pro 36.1 14 0.001 21.9 2.9 33 52-84 93-126 (137)
18 d1zbdb_ g.50.1.1 (B:) Effector 35.4 4.2 0.00031 25.3 0.3 17 60-76 2-18 (124)
19 d1sqwa2 d.17.6.3 (A:1-94) Nip7 35.0 19 0.0014 22.6 3.5 27 60-86 3-42 (94)
20 d1z7xw1 c.10.1.1 (W:1-460) Rib 33.8 19 0.0014 23.3 3.4 28 48-75 396-423 (460)
21 d2cqea1 g.66.1.1 (A:458-513) Z 33.4 8 0.00058 22.6 1.3 24 53-76 17-40 (56)
22 d2ns0a1 a.4.5.76 (A:1-85) Hypo 32.9 7.2 0.00052 24.1 1.1 9 77-85 75-83 (85)
23 d1v64a_ a.21.1.1 (A:) Nucleola 31.2 7.4 0.00054 23.2 0.9 19 58-76 52-70 (108)
24 d1zj8a1 d.58.36.1 (A:327-406) 30.9 5.4 0.00039 22.7 0.2 15 75-89 12-28 (80)
25 d1y7ta2 d.162.1.1 (A:154-332) 30.1 13 0.00094 23.1 2.0 15 60-74 144-158 (173)
26 d1hsma_ a.21.1.1 (A:) High mob 29.2 3.6 0.00026 23.3 -0.8 19 58-76 41-59 (79)
27 d1hyea2 d.162.1.1 (A:146-313) 28.7 15 0.0011 22.6 2.2 15 59-73 141-155 (168)
28 d1xkra_ d.252.1.1 (A:) Chemota 28.7 15 0.0011 23.9 2.3 28 59-86 2-42 (205)
29 d1ixra1 a.60.2.1 (A:63-135) DN 28.4 16 0.0012 21.5 2.1 16 62-77 2-17 (73)
30 d2a2ua_ b.60.1.1 (A:) Major ur 27.6 26 0.0019 20.3 3.0 25 54-78 118-143 (158)
31 d1bvsa2 a.60.2.1 (A:64-134) DN 26.4 19 0.0014 20.9 2.2 16 62-77 1-16 (71)
32 d2bmfa1 c.37.1.14 (A:483-618) 25.9 19 0.0014 23.9 2.4 19 60-78 42-60 (136)
33 d5mdha2 d.162.1.1 (A:155-333) 25.7 17 0.0012 23.0 2.0 37 33-74 127-163 (179)
34 d2dw4a1 a.4.1.18 (A:172-273) L 25.2 10 0.00076 23.3 0.8 21 55-75 11-31 (102)
35 d1hyha2 d.162.1.1 (A:167-329) 25.0 18 0.0013 22.1 2.0 33 37-74 118-150 (163)
36 d1b8pa2 d.162.1.1 (A:159-329) 25.0 18 0.0013 22.2 2.0 34 36-74 124-157 (171)
37 d2rnrb1 b.55.1.9 (B:1-108) TFI 24.9 30 0.0022 21.6 3.1 44 30-74 54-97 (108)
38 d1ldma2 d.162.1.1 (A:161-329) 24.8 18 0.0013 22.0 2.0 48 22-74 111-158 (169)
39 d1k99a_ a.21.1.1 (A:) Nucleola 24.8 5.5 0.0004 22.9 -0.6 19 58-76 49-67 (91)
40 d1ldna2 d.162.1.1 (A:163-330) 24.6 19 0.0014 21.9 2.0 33 36-73 124-156 (168)
41 d1llda2 d.162.1.1 (A:150-319) 24.5 19 0.0014 22.3 2.0 49 20-74 111-159 (170)
42 d1oiha_ b.82.2.5 (A:) Putative 24.2 18 0.0013 23.9 1.9 35 47-82 12-46 (288)
43 d1j7na3 d.166.1.1 (A:264-550) 24.2 6.6 0.00048 29.3 -0.4 24 57-80 101-124 (287)
44 d1i4ua_ b.60.1.1 (A:) Alpha-cr 24.2 27 0.002 21.6 2.8 24 55-78 135-159 (181)
45 d1qb3a_ d.97.1.1 (A:) cks1 {Ba 23.5 31 0.0022 22.2 3.0 25 58-82 5-37 (113)
46 d1e5pa_ b.60.1.1 (A:) Aphrodis 23.1 37 0.0027 20.0 3.2 23 56-78 110-133 (149)
47 d1i0za2 d.162.1.1 (A:161-332) 22.9 49 0.0036 20.0 3.9 32 36-72 128-159 (172)
48 d1ae9a_ d.163.1.1 (A:) Integra 22.3 31 0.0023 19.4 2.6 20 58-77 1-20 (179)
49 d1ojua2 d.162.1.1 (A:164-331) 22.0 23 0.0017 22.7 2.2 16 59-74 126-141 (152)
50 d1io0a_ c.10.1.1 (A:) Tropomod 21.7 35 0.0025 20.3 2.8 28 48-75 45-72 (166)
51 d1cuka2 a.60.2.1 (A:65-142) DN 21.5 27 0.0019 20.6 2.2 16 62-77 1-16 (78)
52 d1y6ja2 d.162.1.1 (A:149-317) 21.3 24 0.0017 21.8 2.0 35 35-74 124-158 (169)
53 d2o8ra1 a.7.15.1 (A:4-112) Pol 21.2 1.3 9.7E-05 27.1 -4.1 20 65-84 32-53 (109)
54 d2cmda2 d.162.1.1 (A:146-312) 20.9 25 0.0018 21.5 2.0 34 36-74 118-152 (167)
55 d1t3wa_ a.236.1.1 (A:) DNA pri 20.8 26 0.0019 21.0 2.1 17 58-74 114-130 (134)
56 d1dzka_ b.60.1.1 (A:) Odorant- 20.8 43 0.0032 19.7 3.2 23 56-78 109-132 (148)
57 d1t15a1 c.15.1.3 (A:1649-1757) 20.7 33 0.0024 19.8 2.5 25 54-78 2-26 (109)
58 d1gkab_ b.60.1.1 (B:) Alpha-cr 20.5 21 0.0016 21.2 1.6 24 55-78 132-156 (174)
59 d1gvda_ a.4.1.3 (A:) c-Myb, DN 20.4 33 0.0024 18.2 2.3 22 56-77 1-22 (52)
60 d1utaa_ d.58.52.1 (A:) Cell di 20.2 21 0.0015 19.8 1.4 11 74-84 37-47 (77)
61 d1o6za2 d.162.1.1 (A:163-330) 20.2 26 0.0019 20.9 2.0 16 59-74 136-151 (161)
62 d2pq3a1 a.39.1.5 (A:3-75) Calm 20.2 29 0.0021 18.6 2.0 14 60-73 1-14 (73)
No 1
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=59.50 E-value=1.9 Score=25.21 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=16.2
Q ss_pred cccCCHHHHHHHHHHhhcC
Q 034556 58 RNAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 58 Rn~lse~ek~kfkeL~~~D 76 (91)
=+.||++||..|+++++.|
T Consensus 41 Wk~ls~~eK~~y~~~A~~~ 59 (86)
T d2lefa_ 41 WHALSREEQAKYYELARKE 59 (86)
T ss_dssp HTTSCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHH
Confidence 3689999999999998764
No 2
>d1r7ma2 d.95.2.1 (A:121-225) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=55.38 E-value=6.9 Score=23.78 Aligned_cols=35 Identities=14% Similarity=0.158 Sum_probs=29.4
Q ss_pred ceeEeecccCCHHHHHHHHHHhhcC-----------CeEEEEeecc
Q 034556 52 TKLLFSRNAFKREDKEKFEKLRKDD-----------DFYLICYLAG 86 (91)
Q Consensus 52 tkLrlsRn~lse~ek~kfkeL~~~D-----------gfYrIRvPsn 86 (91)
..++|.=+.||++|.+.+.+.+..- +-|+|++++.
T Consensus 38 ~~i~l~T~~Ft~~e~~~L~~~L~~kf~l~~~i~~~~~~~~i~i~~~ 83 (105)
T d1r7ma2 38 KSIVLNTQSFTFEEVEYLVKGLRNKFQLNCYVKINKNKPIIYIDSM 83 (105)
T ss_dssp CCEEECCTTSCHHHHHHHHHHHHHHHCCCEEEEEETTEEEEEECGG
T ss_pred CceEEEeCCCCHHHHHHHHHHHHHHhCceEEEEecCCeEEEEEehh
Confidence 6789999999999999999988753 6678888764
No 3
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=53.04 E-value=2.8 Score=24.36 Aligned_cols=19 Identities=16% Similarity=0.115 Sum_probs=16.3
Q ss_pred cccCCHHHHHHHHHHhhcC
Q 034556 58 RNAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 58 Rn~lse~ek~kfkeL~~~D 76 (91)
=+.||++||..|+++++.|
T Consensus 41 W~~l~~eeK~~y~~~A~~~ 59 (80)
T d1gt0d_ 41 WKLLSETEKRPFIDEAKRL 59 (80)
T ss_dssp HTTSCHHHHHHHHHHHHHH
T ss_pred HCcCCHHHHHHHHHHHHHH
Confidence 4679999999999998764
No 4
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.55 E-value=3.1 Score=24.18 Aligned_cols=19 Identities=11% Similarity=0.024 Sum_probs=16.2
Q ss_pred cccCCHHHHHHHHHHhhcC
Q 034556 58 RNAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 58 Rn~lse~ek~kfkeL~~~D 76 (91)
=+.||++||..|++.++.|
T Consensus 43 W~~L~~eeK~~y~~~A~~~ 61 (85)
T d1j46a_ 43 WKMLTEAEKWPFFQEAQKL 61 (85)
T ss_dssp HTTSCHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHH
Confidence 3679999999999998764
No 5
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=49.11 E-value=3.5 Score=24.21 Aligned_cols=18 Identities=22% Similarity=0.536 Sum_probs=15.7
Q ss_pred ccCCHHHHHHHHHHhhcC
Q 034556 59 NAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~D 76 (91)
+.||++||+.+++.++.|
T Consensus 46 k~ls~~eK~~Y~~~a~~~ 63 (101)
T d1v63a_ 46 QRISQSQKEHYKKLAEEQ 63 (101)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHH
Confidence 579999999999998765
No 6
>d1qwda_ b.60.1.1 (A:) Outer membrane lipoprotein Blc {Escherichia coli [TaxId: 562]}
Probab=47.06 E-value=7.1 Score=23.65 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=21.0
Q ss_pred eecc-cCCHHHHHHHHHHhhcCCe
Q 034556 56 FSRN-AFKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 56 lsRn-~lse~ek~kfkeL~~~Dgf 78 (91)
|||+ .++++.+++++++++.=||
T Consensus 132 lsR~~~l~~~~~~~~~~~~~~~G~ 155 (167)
T d1qwda_ 132 LSRTPTISDEVKQEMLAVATREGF 155 (167)
T ss_dssp EESSSSCCHHHHHHHHHHHHHTTC
T ss_pred EEcCCCCCHHHHHHHHHHHHHhCC
Confidence 8999 7999999999999998886
No 7
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]}
Probab=46.09 E-value=6.4 Score=25.95 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=16.7
Q ss_pred cccCCHHHHHHHHHHhhcCCeEEEE
Q 034556 58 RNAFKREDKEKFEKLRKDDDFYLIC 82 (91)
Q Consensus 58 Rn~lse~ek~kfkeL~~~DgfYrIR 82 (91)
+-.||+|+++.|++ |||.-|+
T Consensus 2 ~~~Lt~eq~~~f~~----~Gyl~i~ 22 (308)
T d2fcta1 2 KFALTAEQRASFEK----NGFIGPF 22 (308)
T ss_dssp TTCCCHHHHHHHHH----HSEEEEE
T ss_pred CCCCCHHHHHHHHh----CCEEECc
Confidence 45799999999986 7887664
No 8
>d1gt1a_ b.60.1.1 (A:) Odorant-binding protein {Cow (Bos taurus) [TaxId: 9913]}
Probab=45.38 E-value=9.9 Score=22.80 Aligned_cols=29 Identities=38% Similarity=0.418 Sum_probs=22.7
Q ss_pred ccceeEeecccCCHHHHHHHHHHhhcCCe
Q 034556 50 TLTKLLFSRNAFKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 50 ~LtkLrlsRn~lse~ek~kfkeL~~~Dgf 78 (91)
....+...|-+++.+.+++|++++..=||
T Consensus 112 ~~~~~L~r~~~~~~e~~e~F~~~~~~~Gi 140 (158)
T d1gt1a_ 112 TELTELFVKLNVEDEDLEKFWKLTEDKGI 140 (158)
T ss_dssp EEEEEEEEECCCCHHHHHHHHHHHHHTTC
T ss_pred EEEEEEecCCCcCHHHHHHHHHHHHHcCC
Confidence 33344556678999999999999998777
No 9
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=44.17 E-value=3.5 Score=23.79 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=15.5
Q ss_pred ccCCHHHHHHHHHHhhcC
Q 034556 59 NAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~D 76 (91)
+.|+++||+.+++.++.|
T Consensus 60 ~~Ls~~eK~~Y~~~A~~~ 77 (90)
T d1wgfa_ 60 NDLSEKKKAKYKAREAAL 77 (90)
T ss_dssp HHSCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHH
Confidence 579999999999988764
No 10
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.40 E-value=3.2 Score=27.06 Aligned_cols=22 Identities=23% Similarity=0.557 Sum_probs=16.3
Q ss_pred eecccCCHHHHHHHHHHhhcCCeEEE
Q 034556 56 FSRNAFKREDKEKFEKLRKDDDFYLI 81 (91)
Q Consensus 56 lsRn~lse~ek~kfkeL~~~DgfYrI 81 (91)
++.+-||+|+++.|++ |||.-|
T Consensus 6 ~~~~~Lt~eq~~~f~~----~Gyvvi 27 (296)
T d2a1xa1 6 LDNNVLTLEQRKFYEE----NGFLVI 27 (296)
T ss_dssp CCC--CCSTHHHHHHH----HSEEEE
T ss_pred cCCCCCCHHHHHHHHH----CCEEEc
Confidence 4567799999999976 998865
No 11
>d1puza_ a.218.1.1 (A:) Hypothetical protein NMA1147 {Neisseria meningitidis, mc58 [TaxId: 487]}
Probab=42.40 E-value=4.8 Score=23.81 Aligned_cols=19 Identities=11% Similarity=0.289 Sum_probs=16.7
Q ss_pred ccCCHHHHHHHHHHhhcCC
Q 034556 59 NAFKREDKEKFEKLRKDDD 77 (91)
Q Consensus 59 n~lse~ek~kfkeL~~~Dg 77 (91)
..|+++|.+.|++|++.++
T Consensus 36 ~~l~~~el~~f~~lL~~~D 54 (82)
T d1puza_ 36 EHLSDKELSEFSEILEFQD 54 (82)
T ss_dssp HHCCHHHHHHHHHHHTSCH
T ss_pred HHCCHHHHHHHHHHHcCCh
Confidence 5789999999999998764
No 12
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=41.91 E-value=4.6 Score=23.69 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=16.1
Q ss_pred cccCCHHHHHHHHHHhhcC
Q 034556 58 RNAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 58 Rn~lse~ek~kfkeL~~~D 76 (91)
=+.||++||..|++.++.|
T Consensus 59 W~~ls~~eK~~y~~~a~~~ 77 (93)
T d1lwma_ 59 WKALTPEEKQPYEAKAQAD 77 (93)
T ss_dssp HHTSCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHH
Confidence 4689999999999988764
No 13
>d1x71a1 b.60.1.1 (A:4-177) Neutrophil gelatinase-associated lipocalin (NGAL) {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.91 E-value=10 Score=22.92 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.2
Q ss_pred eEeeccc-CCHHHHHHHHHHhhcCCe
Q 034556 54 LLFSRNA-FKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 54 LrlsRn~-lse~ek~kfkeL~~~Dgf 78 (91)
--|||++ ++++.+++|+++++.=||
T Consensus 133 ~ilsR~~~~~~~~~~~~~~~~~~~G~ 158 (174)
T d1x71a1 133 TLYGRTKELTSELKENFIRFSKSLGL 158 (174)
T ss_dssp EEEESSSCCCHHHHHHHHHHHHTTTC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 3478876 789999999999998886
No 14
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=39.62 E-value=1.9 Score=24.05 Aligned_cols=19 Identities=32% Similarity=0.550 Sum_probs=15.8
Q ss_pred cccCCHHHHHHHHHHhhcC
Q 034556 58 RNAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 58 Rn~lse~ek~kfkeL~~~D 76 (91)
=+.||++||+.+++.++.|
T Consensus 42 Wk~ls~~eK~~y~~~a~~~ 60 (71)
T d1ckta_ 42 WKTMSAKEKGKFEDMAKAD 60 (71)
T ss_dssp HHTCCTTTSHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHH
Confidence 3578999999999998765
No 15
>d1kxoa_ b.60.1.1 (A:) Bilin-binding protein {Cabbage butterfly (Pieris brassicae) [TaxId: 7116]}
Probab=39.25 E-value=9.9 Score=22.87 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=18.5
Q ss_pred Eeeccc-CCHHHHHHHHHHh-hcCCe
Q 034556 55 LFSRNA-FKREDKEKFEKLR-KDDDF 78 (91)
Q Consensus 55 rlsRn~-lse~ek~kfkeL~-~~Dgf 78 (91)
-|||++ |+++.++++++.+ +.-||
T Consensus 130 IlsR~~~l~~~~~~~~~~~l~~~~g~ 155 (171)
T d1kxoa_ 130 VLSRSMVLTGEAKTAVENYLIGSPVV 155 (171)
T ss_dssp EEESSSSCCHHHHHHHHHHTTSCSSC
T ss_pred EEecCCCCCHHHHHHHHHHHHHHcCC
Confidence 579987 9999999998754 55454
No 16
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=38.84 E-value=2.8 Score=23.57 Aligned_cols=19 Identities=11% Similarity=0.097 Sum_probs=15.9
Q ss_pred cccCCHHHHHHHHHHhhcC
Q 034556 58 RNAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 58 Rn~lse~ek~kfkeL~~~D 76 (91)
=+.||++||+.|.+.++.+
T Consensus 41 Wk~ls~~eK~~y~~~A~~~ 59 (70)
T d1i11a_ 41 WKAMTNLEKQPYYEEQARL 59 (70)
T ss_dssp HTTSCSGGGHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHH
Confidence 4689999999999988754
No 17
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}
Probab=36.06 E-value=14 Score=21.91 Aligned_cols=33 Identities=0% Similarity=0.049 Sum_probs=26.2
Q ss_pred ceeEee-cccCCHHHHHHHHHHhhcCCeEEEEee
Q 034556 52 TKLLFS-RNAFKREDKEKFEKLRKDDDFYLICYL 84 (91)
Q Consensus 52 tkLrls-Rn~lse~ek~kfkeL~~~DgfYrIRvP 84 (91)
..+-+| .-.|++.+|+++++.+..=||-.||+=
T Consensus 93 ~~~VItVPa~f~~~qR~at~~Aa~~AGl~vv~li 126 (137)
T d1jcea1 93 PRVVIGVPIGITDVERRAILDAGLEAGASKVFLI 126 (137)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred cceEEEeecccCHHHHHHHHHHHHHcCCCEEEEe
Confidence 334343 357899999999999999999999873
No 18
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=35.37 E-value=4.2 Score=25.27 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=14.6
Q ss_pred cCCHHHHHHHHHHhhcC
Q 034556 60 AFKREDKEKFEKLRKDD 76 (91)
Q Consensus 60 ~lse~ek~kfkeL~~~D 76 (91)
+||+||++...+|++.|
T Consensus 2 ~LT~eE~~~i~~VL~r~ 18 (124)
T d1zbdb_ 2 ELTDEEKEIINRVIARA 18 (124)
T ss_dssp CCCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 58999999999998765
No 19
>d1sqwa2 d.17.6.3 (A:1-94) Nip7p homolog, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.01 E-value=19 Score=22.60 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=19.7
Q ss_pred cCCHHH-HHHHHHHhh------------cCCeEEEEeecc
Q 034556 60 AFKRED-KEKFEKLRK------------DDDFYLICYLAG 86 (91)
Q Consensus 60 ~lse~e-k~kfkeL~~------------~DgfYrIRvPsn 86 (91)
+||||| +.-|++|++ .||-|-.|+..+
T Consensus 3 pLteeEtk~vfeKLa~yiG~Ni~~li~~~d~~y~FRLhk~ 42 (94)
T d1sqwa2 3 PLTEEETRVMFEKIAKYIGENLQLLVDRPDGTYCFRLHND 42 (94)
T ss_dssp ECCHHHHHHHHHHHHHHHGGGTHHHHEETTEEEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHHHhhhHHHHhcCCCCCEEEEEeCC
Confidence 678777 456777764 589998888754
No 20
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.78 E-value=19 Score=23.29 Aligned_cols=28 Identities=14% Similarity=0.150 Sum_probs=20.1
Q ss_pred ccccceeEeecccCCHHHHHHHHHHhhc
Q 034556 48 VQTLTKLLFSRNAFKREDKEKFEKLRKD 75 (91)
Q Consensus 48 ~q~LtkLrlsRn~lse~ek~kfkeL~~~ 75 (91)
.+.|..|.|+.|+++++-..+|-+-++.
T Consensus 396 ~~~L~~L~Ls~N~i~~~g~~~l~~~l~~ 423 (460)
T d1z7xw1 396 NHSLRELDLSNNCLGDAGILQLVESVRQ 423 (460)
T ss_dssp CCCCCEEECCSSSCCHHHHHHHHHHHTS
T ss_pred CCCCCEEECCCCcCCHHHHHHHHHHHHh
Confidence 4678888888888887777777655543
No 21
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.41 E-value=8 Score=22.56 Aligned_cols=24 Identities=29% Similarity=0.582 Sum_probs=20.9
Q ss_pred eeEeecccCCHHHHHHHHHHhhcC
Q 034556 53 KLLFSRNAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 53 kLrlsRn~lse~ek~kfkeL~~~D 76 (91)
+=+||-.+||++-|+-+.+.++.|
T Consensus 17 ~C~FSH~pLt~~t~~lL~K~l~~~ 40 (56)
T d2cqea1 17 DCMFSHDPLTEETRELLDKMLADD 40 (56)
T ss_dssp TCSSBCCCCCHHHHHHHHHHHHHH
T ss_pred cccccCCccCHHHHHHHHHHHhcc
Confidence 457999999999999999998764
No 22
>d2ns0a1 a.4.5.76 (A:1-85) Hypothetical protein RHA1_ro06458 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=32.89 E-value=7.2 Score=24.11 Aligned_cols=9 Identities=11% Similarity=-0.094 Sum_probs=8.4
Q ss_pred CeEEEEeec
Q 034556 77 DFYLICYLA 85 (91)
Q Consensus 77 gfYrIRvPs 85 (91)
|.||||+|+
T Consensus 75 GpiRlrl~r 83 (85)
T d2ns0a1 75 GPIRIRWTR 83 (85)
T ss_dssp SCCEEEECC
T ss_pred CceEeeccC
Confidence 999999997
No 23
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.25 E-value=7.4 Score=23.22 Aligned_cols=19 Identities=11% Similarity=0.305 Sum_probs=15.8
Q ss_pred cccCCHHHHHHHHHHhhcC
Q 034556 58 RNAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 58 Rn~lse~ek~kfkeL~~~D 76 (91)
=+.||++||+.+++.+..|
T Consensus 52 W~~Ls~~eK~~Y~~~a~~~ 70 (108)
T d1v64a_ 52 WKLLSQKEKDAYHKKCDQK 70 (108)
T ss_dssp HHHSCHHHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHHHHH
Confidence 3579999999999988754
No 24
>d1zj8a1 d.58.36.1 (A:327-406) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=30.88 E-value=5.4 Score=22.72 Aligned_cols=15 Identities=13% Similarity=0.169 Sum_probs=9.4
Q ss_pred cCCeE--EEEeeccccC
Q 034556 75 DDDFY--LICYLAGCHP 89 (91)
Q Consensus 75 ~DgfY--rIRvPsnvl~ 89 (91)
.||.| +||+|...++
T Consensus 12 ~dG~~~vri~~p~G~it 28 (80)
T d1zj8a1 12 KNGLNAVGVAPIAGRVS 28 (80)
T ss_dssp TTSSEEEEEBCBTTEEE
T ss_pred cCCcEEEEEeccCcEEC
Confidence 47865 6667765543
No 25
>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}
Probab=30.13 E-value=13 Score=23.11 Aligned_cols=15 Identities=7% Similarity=0.164 Sum_probs=12.4
Q ss_pred cCCHHHHHHHHHHhh
Q 034556 60 AFKREDKEKFEKLRK 74 (91)
Q Consensus 60 ~lse~ek~kfkeL~~ 74 (91)
+|+++|+++|++-++
T Consensus 144 ~L~~~E~~~l~~s~~ 158 (173)
T d1y7ta2 144 EINEFARKRMEITAQ 158 (173)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 799999999976543
No 26
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=29.22 E-value=3.6 Score=23.28 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=15.4
Q ss_pred cccCCHHHHHHHHHHhhcC
Q 034556 58 RNAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 58 Rn~lse~ek~kfkeL~~~D 76 (91)
=+.||++||+.+++.++.|
T Consensus 41 W~~ls~~eK~~y~~~a~~~ 59 (79)
T d1hsma_ 41 WNNTAADDKQPYEKKAAKL 59 (79)
T ss_dssp HHTSCSTTTHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHH
Confidence 3578999999999988754
No 27
>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=28.68 E-value=15 Score=22.57 Aligned_cols=15 Identities=13% Similarity=0.235 Sum_probs=12.8
Q ss_pred ccCCHHHHHHHHHHh
Q 034556 59 NAFKREDKEKFEKLR 73 (91)
Q Consensus 59 n~lse~ek~kfkeL~ 73 (91)
-+||++|+++|++-+
T Consensus 141 l~Ls~~E~~~l~~Sa 155 (168)
T d1hyea2 141 IELDKDEIIAFRKSA 155 (168)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 469999999999854
No 28
>d1xkra_ d.252.1.1 (A:) Chemotaxis protein CheC {Thermotoga maritima [TaxId: 2336]}
Probab=28.66 E-value=15 Score=23.94 Aligned_cols=28 Identities=7% Similarity=0.000 Sum_probs=22.1
Q ss_pred ccCCHHHHHHHHHHhh-------------cCCeEEEEeecc
Q 034556 59 NAFKREDKEKFEKLRK-------------DDDFYLICYLAG 86 (91)
Q Consensus 59 n~lse~ek~kfkeL~~-------------~DgfYrIRvPsn 86 (91)
.+||+++++.|+|+.+ .+.+=.|.||.+
T Consensus 2 m~ls~~~~D~l~Ei~NIg~G~AAtaLs~ll~~~v~l~vp~v 42 (205)
T d1xkra_ 2 MKISERQKDLLKEIGNIGAGNAATAISYMINKKVEISVPNV 42 (205)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCEEEECCCE
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECCEE
Confidence 5799999999999975 366777777764
No 29
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]}
Probab=28.40 E-value=16 Score=21.47 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHhhcCC
Q 034556 62 KREDKEKFEKLRKDDD 77 (91)
Q Consensus 62 se~ek~kfkeL~~~Dg 77 (91)
+++||+-|+.|..+.|
T Consensus 2 d~~Er~lF~~Li~V~G 17 (73)
T d1ixra1 2 DEENLALFELLLSVSG 17 (73)
T ss_dssp SHHHHHHHHHHHSSSC
T ss_pred CHHHHHHHHHHhccCC
Confidence 5799999999999887
No 30
>d2a2ua_ b.60.1.1 (A:) Major urinary protein/alpha-2u-globulin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=27.55 E-value=26 Score=20.28 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=20.7
Q ss_pred eEeecc-cCCHHHHHHHHHHhhcCCe
Q 034556 54 LLFSRN-AFKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 54 LrlsRn-~lse~ek~kfkeL~~~Dgf 78 (91)
--|+|+ .++++.+++|.++++.=||
T Consensus 118 ~llsR~~~~~~~~~~~~~~~~~~~G~ 143 (158)
T d2a2ua_ 118 VLYGRTKDLSSDIKEKFAKLCEAHGI 143 (158)
T ss_dssp EEEESSSSCCHHHHHHHHHHHHTTTC
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence 446774 5789999999999998887
No 31
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]}
Probab=26.42 E-value=19 Score=20.94 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHhhcCC
Q 034556 62 KREDKEKFEKLRKDDD 77 (91)
Q Consensus 62 se~ek~kfkeL~~~Dg 77 (91)
+.+||+-|+.|..+.|
T Consensus 1 d~eEr~~F~~Li~V~G 16 (71)
T d1bvsa2 1 DAENRDLFLALLSVSG 16 (71)
T ss_dssp SHHHHHHHHHHHTSSS
T ss_pred CHHHHHHHHHHhccCC
Confidence 4689999999999887
No 32
>d2bmfa1 c.37.1.14 (A:483-618) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=25.88 E-value=19 Score=23.90 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=16.6
Q ss_pred cCCHHHHHHHHHHhhcCCe
Q 034556 60 AFKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 60 ~lse~ek~kfkeL~~~Dgf 78 (91)
-|.+|+|..|.+|+...+|
T Consensus 42 RL~~E~RK~F~~Ll~~~D~ 60 (136)
T d2bmfa1 42 RLRGEARKTFVDLMRRGDL 60 (136)
T ss_dssp CCCHHHHHHHHHHHHTSCC
T ss_pred ecChhhHHHHHHHHhhcCC
Confidence 3789999999999998776
No 33
>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=25.74 E-value=17 Score=22.99 Aligned_cols=37 Identities=11% Similarity=0.027 Sum_probs=24.8
Q ss_pred CCCccccccccccccccccceeEeecccCCHHHHHHHHHHhh
Q 034556 33 PTNTPQNLLKISSHSVQTLTKLLFSRNAFKREDKEKFEKLRK 74 (91)
Q Consensus 33 ~ag~FsaRlk~~~~g~q~LtkLrlsRn~lse~ek~kfkeL~~ 74 (91)
..-.|+.=..+-..|..... .-+||++|+++|++-++
T Consensus 127 ~~v~~s~P~~lg~~Gv~~v~-----~l~L~~~E~~~l~~Sa~ 163 (179)
T d5mdha2 127 DDLLYSFPVTIKDKTWKIVE-----GLPINDFSREKMDLTAK 163 (179)
T ss_dssp SSCEEEEEEEEETTEEEECC-----CCCCCHHHHHHHHHHHH
T ss_pred cceEEeeeEEEcCCcEEEEe-----CCCCCHHHHHHHHHHHH
Confidence 33346766666666666533 33699999999998664
No 34
>d2dw4a1 a.4.1.18 (A:172-273) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.23 E-value=10 Score=23.26 Aligned_cols=21 Identities=5% Similarity=0.203 Sum_probs=17.9
Q ss_pred EeecccCCHHHHHHHHHHhhc
Q 034556 55 LFSRNAFKREDKEKFEKLRKD 75 (91)
Q Consensus 55 rlsRn~lse~ek~kfkeL~~~ 75 (91)
+|.-+.++++||..|.++.+.
T Consensus 11 ~l~~d~l~~~E~~~fpe~~~~ 31 (102)
T d2dw4a1 11 RLPHDRMTSQEAACFPDIISG 31 (102)
T ss_dssp TCCTTSCCHHHHHHCHHHHTS
T ss_pred cCCCCcCCHHHHHHChHhhcC
Confidence 456689999999999999864
No 35
>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}
Probab=25.03 E-value=18 Score=22.15 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=22.8
Q ss_pred cccccccccccccccceeEeecccCCHHHHHHHHHHhh
Q 034556 37 PQNLLKISSHSVQTLTKLLFSRNAFKREDKEKFEKLRK 74 (91)
Q Consensus 37 FsaRlk~~~~g~q~LtkLrlsRn~lse~ek~kfkeL~~ 74 (91)
|+-=..+-..|...+-.| +||++|+++|++-++
T Consensus 118 ~s~Pv~ig~~Gv~~v~~l-----~Ls~~E~~~l~~s~~ 150 (163)
T d1hyha2 118 LSYPAIIGRDGVLAETTL-----DLTTDEQEKLLQSRD 150 (163)
T ss_dssp EEEEEEEETTEEEEECCC-----CCCHHHHHHHHHHHH
T ss_pred EEeEEEEcCCeEEEEecC-----CCCHHHHHHHHHHHH
Confidence 466666667776653333 799999999976543
No 36
>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]}
Probab=24.96 E-value=18 Score=22.25 Aligned_cols=34 Identities=3% Similarity=-0.077 Sum_probs=20.3
Q ss_pred ccccccccccccccccceeEeecccCCHHHHHHHHHHhh
Q 034556 36 TPQNLLKISSHSVQTLTKLLFSRNAFKREDKEKFEKLRK 74 (91)
Q Consensus 36 ~FsaRlk~~~~g~q~LtkLrlsRn~lse~ek~kfkeL~~ 74 (91)
.||-=..+-.+|..... .-+||++|+++|++-++
T Consensus 124 ~fS~Pv~ig~~gve~v~-----~l~L~~~e~~~l~~s~~ 157 (171)
T d1b8pa2 124 IFGFPVTTENGEYKIVQ-----GLSIDAFSQERINVTLN 157 (171)
T ss_dssp EEEEEEEEETTEEEECC-----CCCCCHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCeEEEEe-----CCCCCHHHHHHHHHHHH
Confidence 45544444344444322 23599999999998654
No 37
>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.90 E-value=30 Score=21.58 Aligned_cols=44 Identities=18% Similarity=0.269 Sum_probs=35.2
Q ss_pred CCCCCCccccccccccccccccceeEeecccCCHHHHHHHHHHhh
Q 034556 30 LPLPTNTPQNLLKISSHSVQTLTKLLFSRNAFKREDKEKFEKLRK 74 (91)
Q Consensus 30 ef~~ag~FsaRlk~~~~g~q~LtkLrlsRn~lse~ek~kfkeL~~ 74 (91)
-.+|.|.-...|++..|.+.. -...|+.-+=-..||+.+|++++
T Consensus 54 q~Spe~s~Kv~Lkiv~~~~~s-~~F~Ftn~~~~~~~Rd~iK~~Lq 97 (108)
T d2rnrb1 54 KISPEGKAKIQLQLVLHAGDT-TNFHFSNESTAVKERDAVKDLLQ 97 (108)
T ss_dssp EECCTTCSSEEEEEEETTSCE-EEEEECCTTTHHHHHHHHHHHHH
T ss_pred ecCCCCcccceeEEEEeCCCe-EEEEECChHHHHHHHHHHHHHHH
Confidence 567888888899988887766 67788754566789999999886
No 38
>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]}
Probab=24.85 E-value=18 Score=22.03 Aligned_cols=48 Identities=6% Similarity=0.029 Sum_probs=29.1
Q ss_pred eEEeecCCCCCCCCccccccccccccccccceeEeecccCCHHHHHHHHHHhh
Q 034556 22 QATHHHNTLPLPTNTPQNLLKISSHSVQTLTKLLFSRNAFKREDKEKFEKLRK 74 (91)
Q Consensus 22 ~f~LEHs~ef~~ag~FsaRlk~~~~g~q~LtkLrlsRn~lse~ek~kfkeL~~ 74 (91)
++.++-..+..+.-.|+-=..+-..|...+- .-+|+++|+++|++-++
T Consensus 111 ~~~~~g~ygi~~~i~~s~Pv~lg~~Gv~~v~-----~l~L~~~E~~~l~~s~~ 158 (169)
T d1ldma2 111 STMVKDFYGIKDNVFLSLPCVLNDHGISNIV-----KMKLKPNEEQQLQKSAT 158 (169)
T ss_dssp EEECTTSTTCCSCCEEEEEEEEETTEEEEEC-----CCCCCHHHHHHHHHHHH
T ss_pred eeecccccCCcCCceEEeeEEEcCCcEEEEe-----cCCCCHHHHHHHHHHHH
Confidence 3334333333333356766677777766532 23699999999997554
No 39
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.80 E-value=5.5 Score=22.94 Aligned_cols=19 Identities=11% Similarity=0.134 Sum_probs=15.8
Q ss_pred cccCCHHHHHHHHHHhhcC
Q 034556 58 RNAFKREDKEKFEKLRKDD 76 (91)
Q Consensus 58 Rn~lse~ek~kfkeL~~~D 76 (91)
=+.||++||..|.+.++.|
T Consensus 49 W~~ls~~eK~~y~~~a~~~ 67 (91)
T d1k99a_ 49 YKELPEKKKMKYIQDFQRE 67 (91)
T ss_dssp HHHSCSTTHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHH
Confidence 3679999999999988764
No 40
>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=24.56 E-value=19 Score=21.89 Aligned_cols=33 Identities=9% Similarity=0.171 Sum_probs=21.0
Q ss_pred ccccccccccccccccceeEeecccCCHHHHHHHHHHh
Q 034556 36 TPQNLLKISSHSVQTLTKLLFSRNAFKREDKEKFEKLR 73 (91)
Q Consensus 36 ~FsaRlk~~~~g~q~LtkLrlsRn~lse~ek~kfkeL~ 73 (91)
-||-=..+-..|...+- .-+||++|+++|++-+
T Consensus 124 ~~s~Pv~lg~~Gv~~v~-----~l~Ls~~E~~~L~~s~ 156 (168)
T d1ldna2 124 YIGVPAVINRNGIREVI-----EIELNDDEKNRFHHSA 156 (168)
T ss_dssp EEEEEEEEETTEEEEEC-----CCCCCHHHHHHHHHHH
T ss_pred eecceEEEcCCeEEEEe-----CCCCCHHHHHHHHHHH
Confidence 34544455555655432 2359999999999754
No 41
>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}
Probab=24.53 E-value=19 Score=22.31 Aligned_cols=49 Identities=4% Similarity=-0.059 Sum_probs=29.6
Q ss_pred ceeEEeecCCCCCCCCccccccccccccccccceeEeecccCCHHHHHHHHHHhh
Q 034556 20 AVQATHHHNTLPLPTNTPQNLLKISSHSVQTLTKLLFSRNAFKREDKEKFEKLRK 74 (91)
Q Consensus 20 ~v~f~LEHs~ef~~ag~FsaRlk~~~~g~q~LtkLrlsRn~lse~ek~kfkeL~~ 74 (91)
.++.+++...... ...|+-=..+-..|...+-.| +|+++|+++|++-++
T Consensus 111 ~~~~~~~~~~g~~-~i~~s~P~~lg~~Gv~~i~~l-----~L~~~E~~~l~~sa~ 159 (170)
T d1llda2 111 PVSSMLKDFHGIS-DICMSVPTLLNRQGVNNTINT-----PVSDKELAALKRSAE 159 (170)
T ss_dssp EEEEECSSBTTBC-SSEEEEEEEEETTEEECCSCC-----CCCHHHHHHHHHHHH
T ss_pred eeeccccCccCCC-CeeEeeccEEcCCeeEEEecC-----CCCHHHHHHHHHHHH
Confidence 4455555444442 234555555666666654333 699999999998654
No 42
>d1oiha_ b.82.2.5 (A:) Putative alkylsulfatase AtsK {Pseudomonas putida [TaxId: 303]}
Probab=24.21 E-value=18 Score=23.86 Aligned_cols=35 Identities=6% Similarity=0.028 Sum_probs=25.4
Q ss_pred cccccceeEeecccCCHHHHHHHHHHhhcCCeEEEE
Q 034556 47 SVQTLTKLLFSRNAFKREDKEKFEKLRKDDDFYLIC 82 (91)
Q Consensus 47 g~q~LtkLrlsRn~lse~ek~kfkeL~~~DgfYrIR 82 (91)
=|.+++-+.|+++ ||.++.+++++++..-|+=-||
T Consensus 12 ~Gaei~gidl~~~-l~~~~~~~i~~al~~~~vlvfr 46 (288)
T d1oiha_ 12 IGAEIRGVKLSPD-LDAATVEAIQAALVRHKVIFFR 46 (288)
T ss_dssp SCEEEESCCCCTT-CCHHHHHHHHHHHHHHSEEEEC
T ss_pred eEEEEECcCCCCc-CCHHHHHHHHHHHHHCCEEEEC
Confidence 3556677778664 7888888888888877765554
No 43
>d1j7na3 d.166.1.1 (A:264-550) Anthrax toxin lethal factor, middle domain {Bacillus anthracis [TaxId: 1392]}
Probab=24.21 E-value=6.6 Score=29.26 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=17.1
Q ss_pred ecccCCHHHHHHHHHHhhcCCeEE
Q 034556 57 SRNAFKREDKEKFEKLRKDDDFYL 80 (91)
Q Consensus 57 sRn~lse~ek~kfkeL~~~DgfYr 80 (91)
|.||||++||..++++-.+=-.|-
T Consensus 101 ~~~~~s~~ek~~~~~~~~~~~pY~ 124 (287)
T d1j7na3 101 SSNPLSEKEKEFLKKLKLDIQPYD 124 (287)
T ss_dssp ----CCSTTHHHHHHHHHHTSCBC
T ss_pred CCCCCCHHHHHHHHHhhccCCccc
Confidence 579999999999999987766663
No 44
>d1i4ua_ b.60.1.1 (A:) Alpha-crustacyanin {European lobster (Homarus gammarus) [TaxId: 6707]}
Probab=24.18 E-value=27 Score=21.57 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.1
Q ss_pred Eeecc-cCCHHHHHHHHHHhhcCCe
Q 034556 55 LFSRN-AFKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 55 rlsRn-~lse~ek~kfkeL~~~Dgf 78 (91)
-|||+ .++++..++++++++.=||
T Consensus 135 IlsR~p~l~~~~~~~~~~~~~~~G~ 159 (181)
T d1i4ua_ 135 IFSRSANLADQYVKKCEAAFKNINV 159 (181)
T ss_dssp EEESSSSCCHHHHHHHHHHHHHTTC
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCC
Confidence 57888 6899999999999998776
No 45
>d1qb3a_ d.97.1.1 (A:) cks1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.52 E-value=31 Score=22.25 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=20.0
Q ss_pred cccCCHHHHHHHHHHhhc--------CCeEEEE
Q 034556 58 RNAFKREDKEKFEKLRKD--------DDFYLIC 82 (91)
Q Consensus 58 Rn~lse~ek~kfkeL~~~--------DgfYrIR 82 (91)
...|||.||.++.+.... |+-|-.|
T Consensus 5 ~~~~~~~e~~~l~~f~~~I~YS~kY~DD~yeYR 37 (113)
T d1qb3a_ 5 GRKLTDQERARVLEFQDSIHYSPRYSDDNYEYR 37 (113)
T ss_dssp SCCCCHHHHHHHGGGGGGCEECCCEECSSEEEE
T ss_pred cccCCHHHHHHHHHhhhhceecccccCCCeeEE
Confidence 457999999999999763 7777655
No 46
>d1e5pa_ b.60.1.1 (A:) Aphrodisin, a sex pheromone {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}
Probab=23.07 E-value=37 Score=19.96 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=18.8
Q ss_pred eec-ccCCHHHHHHHHHHhhcCCe
Q 034556 56 FSR-NAFKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 56 lsR-n~lse~ek~kfkeL~~~Dgf 78 (91)
++| ..+|++.+++|++++..=|+
T Consensus 110 ~~R~~~~s~e~~e~F~~~~~~~Gl 133 (149)
T d1e5pa_ 110 AGKGNALTPEENEILVQFAHEKKI 133 (149)
T ss_dssp EESSSCCCHHHHHHHHHHHHHTTC
T ss_pred EcCCCCCCHHHHHHHHHHHHHcCC
Confidence 344 67999999999999987664
No 47
>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}
Probab=22.93 E-value=49 Score=20.04 Aligned_cols=32 Identities=6% Similarity=0.109 Sum_probs=22.9
Q ss_pred ccccccccccccccccceeEeecccCCHHHHHHHHHH
Q 034556 36 TPQNLLKISSHSVQTLTKLLFSRNAFKREDKEKFEKL 72 (91)
Q Consensus 36 ~FsaRlk~~~~g~q~LtkLrlsRn~lse~ek~kfkeL 72 (91)
.|+.=..+-..|...+-.| +|+++|+++|++=
T Consensus 128 ~~s~Pv~lg~~Gv~~v~~l-----~L~~~E~~~l~~S 159 (172)
T d1i0za2 128 FLSLPCILNARGLTSVINQ-----KLKDDEVAQLKKS 159 (172)
T ss_dssp EEEEEEEEETTEEEEECCC-----CCCHHHHHHHHHH
T ss_pred EEEEEEEecCCcEEEEeCC-----CCCHHHHHHHHHH
Confidence 4566666667776654433 7999999999874
No 48
>d1ae9a_ d.163.1.1 (A:) Integrase (Int) {Bacteriophage lambda [TaxId: 10710]}
Probab=22.29 E-value=31 Score=19.38 Aligned_cols=20 Identities=10% Similarity=0.164 Sum_probs=16.7
Q ss_pred cccCCHHHHHHHHHHhhcCC
Q 034556 58 RNAFKREDKEKFEKLRKDDD 77 (91)
Q Consensus 58 Rn~lse~ek~kfkeL~~~Dg 77 (91)
|..||.||-+++.+.+..+.
T Consensus 1 R~~lt~ee~~~l~~~~~~~~ 20 (179)
T d1ae9a_ 1 RSRLTADEYLKIYQAAESSP 20 (179)
T ss_dssp CCCCCHHHHHHHHHHGGGSC
T ss_pred CCCCCHHHHHHHHHHHhhCC
Confidence 45799999999999887765
No 49
>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=22.04 E-value=23 Score=22.67 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=13.0
Q ss_pred ccCCHHHHHHHHHHhh
Q 034556 59 NAFKREDKEKFEKLRK 74 (91)
Q Consensus 59 n~lse~ek~kfkeL~~ 74 (91)
-+|+++|+++|++-++
T Consensus 126 l~L~~~E~~~l~~Sa~ 141 (152)
T d1ojua2 126 IKLSDEEIEKLRNSAK 141 (152)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 3699999999998553
No 50
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=21.73 E-value=35 Score=20.33 Aligned_cols=28 Identities=7% Similarity=-0.075 Sum_probs=23.3
Q ss_pred ccccceeEeecccCCHHHHHHHHHHhhc
Q 034556 48 VQTLTKLLFSRNAFKREDKEKFEKLRKD 75 (91)
Q Consensus 48 ~q~LtkLrlsRn~lse~ek~kfkeL~~~ 75 (91)
-..|.+|.++.|.++++--..+-+.++.
T Consensus 45 n~~L~~L~Ls~n~l~~~~~~~L~~~l~~ 72 (166)
T d1io0a_ 45 NTYVKKFSIVGTRSNDPVAFALAEMLKV 72 (166)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred CCccCeeeccCCcccHHHHHHHHHHHhh
Confidence 4568999999999999988888777653
No 51
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]}
Probab=21.50 E-value=27 Score=20.56 Aligned_cols=16 Identities=19% Similarity=0.520 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHhhcCC
Q 034556 62 KREDKEKFEKLRKDDD 77 (91)
Q Consensus 62 se~ek~kfkeL~~~Dg 77 (91)
+++||+-|+.|..+.|
T Consensus 1 d~~Er~~F~~Li~V~G 16 (78)
T d1cuka2 1 NKQERTLFKELIKTNG 16 (78)
T ss_dssp SHHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHHHccCC
Confidence 4689999999999887
No 52
>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}
Probab=21.26 E-value=24 Score=21.84 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=24.9
Q ss_pred CccccccccccccccccceeEeecccCCHHHHHHHHHHhh
Q 034556 35 NTPQNLLKISSHSVQTLTKLLFSRNAFKREDKEKFEKLRK 74 (91)
Q Consensus 35 g~FsaRlk~~~~g~q~LtkLrlsRn~lse~ek~kfkeL~~ 74 (91)
-.|+-=..+-..|...+-.| +||++|+++|++-++
T Consensus 124 i~~s~Pv~lg~~Gv~~i~~l-----~Ls~~E~~~l~~s~~ 158 (169)
T d1y6ja2 124 VAISLPSIVNSEGVQEVLQF-----NLTPEEEEALRFSAE 158 (169)
T ss_dssp EEEECCEEEETTEEEECCCC-----CCCHHHHHHHHHHHH
T ss_pred cceeeeeEEcCCcEEEEecC-----CCCHHHHHHHHHHHH
Confidence 35666667777777764433 599999999987543
No 53
>d2o8ra1 a.7.15.1 (A:4-112) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}
Probab=21.23 E-value=1.3 Score=27.09 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=14.8
Q ss_pred HHHHHHHHh--hcCCeEEEEee
Q 034556 65 DKEKFEKLR--KDDDFYLICYL 84 (91)
Q Consensus 65 ek~kfkeL~--~~DgfYrIRvP 84 (91)
||-+|=-.. +-|.||.|||.
T Consensus 32 ER~~Fl~I~ssNLDEFFmVRVA 53 (109)
T d2o8ra1 32 DRIKFLSIFSSNLEEFYTVRVA 53 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHH
Confidence 566666654 46999999986
No 54
>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]}
Probab=20.86 E-value=25 Score=21.50 Aligned_cols=34 Identities=9% Similarity=0.079 Sum_probs=22.5
Q ss_pred ccccccccccccccccceeEeecc-cCCHHHHHHHHHHhh
Q 034556 36 TPQNLLKISSHSVQTLTKLLFSRN-AFKREDKEKFEKLRK 74 (91)
Q Consensus 36 ~FsaRlk~~~~g~q~LtkLrlsRn-~lse~ek~kfkeL~~ 74 (91)
-|+--..+-..|.+.+ -.- +|+++|+++|++=++
T Consensus 118 ~~s~P~~ig~~Gv~~v-----~~l~~L~~~E~~~l~~s~~ 152 (167)
T d2cmda2 118 FFSQPLLLGKNGVEER-----KSIGTLSAFEQNALEGMLD 152 (167)
T ss_dssp EEEEEEEEETTEEEEE-----CCCCCCCHHHHHHHHHHHH
T ss_pred cccccEEEeCCceEEE-----eeCCCCCHHHHHHHHHHHH
Confidence 3665666666665552 233 489999999987543
No 55
>d1t3wa_ a.236.1.1 (A:) DNA primase DnaG, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.80 E-value=26 Score=21.00 Aligned_cols=17 Identities=12% Similarity=0.294 Sum_probs=13.9
Q ss_pred cccCCHHHHHHHHHHhh
Q 034556 58 RNAFKREDKEKFEKLRK 74 (91)
Q Consensus 58 Rn~lse~ek~kfkeL~~ 74 (91)
...||++||..+.+|..
T Consensus 114 ~~~Lt~eEk~eL~~L~~ 130 (134)
T d1t3wa_ 114 THGLSNEERLELWTLNQ 130 (134)
T ss_dssp TTCCCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 35699999999998865
No 56
>d1dzka_ b.60.1.1 (A:) Odorant-binding protein {Pig (Sus scrofa) [TaxId: 9823]}
Probab=20.78 E-value=43 Score=19.73 Aligned_cols=23 Identities=17% Similarity=0.550 Sum_probs=18.7
Q ss_pred eecc-cCCHHHHHHHHHHhhcCCe
Q 034556 56 FSRN-AFKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 56 lsRn-~lse~ek~kfkeL~~~Dgf 78 (91)
++|. .++++.+++|+++++.=||
T Consensus 109 ~~Rt~~~s~e~~e~F~~~~~~~Gi 132 (148)
T d1dzka_ 109 LGKGTDIEDQDLEKFKEVTRENGI 132 (148)
T ss_dssp EESSSCCCHHHHHHHHHHHHHTTC
T ss_pred EcCCCCCCHHHHHHHHHHHHHcCC
Confidence 4554 5699999999999988776
No 57
>d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.73 E-value=33 Score=19.80 Aligned_cols=25 Identities=8% Similarity=0.106 Sum_probs=19.9
Q ss_pred eEeecccCCHHHHHHHHHHhhcCCe
Q 034556 54 LLFSRNAFKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 54 LrlsRn~lse~ek~kfkeL~~~Dgf 78 (91)
+.+.-.-|+++|++++++++..=|.
T Consensus 2 ~~i~~SGl~~~e~~~l~~~i~~~Gg 26 (109)
T d1t15a1 2 MSMVVSGLTPEEFMLVYKFARKHHI 26 (109)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHHTC
T ss_pred EEEEECCCCHHHHHHHHHHHHHcCC
Confidence 4556667999999999999886554
No 58
>d1gkab_ b.60.1.1 (B:) Alpha-crustacyanin {European lobster (Homarus gammarus) [TaxId: 6707]}
Probab=20.51 E-value=21 Score=21.16 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=20.4
Q ss_pred Eeecc-cCCHHHHHHHHHHhhcCCe
Q 034556 55 LFSRN-AFKREDKEKFEKLRKDDDF 78 (91)
Q Consensus 55 rlsRn-~lse~ek~kfkeL~~~Dgf 78 (91)
-|||+ .++++..++|+++++.=|+
T Consensus 132 ilsR~~~~~~~~~~~~~~~~~~~g~ 156 (174)
T d1gkab_ 132 VFSRTPQTSGPAVEKTAAVFNKNGV 156 (174)
T ss_dssp EEESSCCSSSHHHHHHHHHHHHHTC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 47998 5999999999999987665
No 59
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.37 E-value=33 Score=18.16 Aligned_cols=22 Identities=14% Similarity=0.380 Sum_probs=18.0
Q ss_pred eecccCCHHHHHHHHHHhhcCC
Q 034556 56 FSRNAFKREDKEKFEKLRKDDD 77 (91)
Q Consensus 56 lsRn~lse~ek~kfkeL~~~Dg 77 (91)
|-|.+.|++|=+++.++++.=|
T Consensus 1 l~rg~WT~eED~~L~~~v~~~g 22 (52)
T d1gvda_ 1 LIKGPWTKEEDQRLIKLVQKYG 22 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHHC
Confidence 3578999999999999987533
No 60
>d1utaa_ d.58.52.1 (A:) Cell division protein FtsN {Escherichia coli [TaxId: 562]}
Probab=20.23 E-value=21 Score=19.83 Aligned_cols=11 Identities=0% Similarity=0.081 Sum_probs=9.0
Q ss_pred hcCCeEEEEee
Q 034556 74 KDDDFYLICYL 84 (91)
Q Consensus 74 ~~DgfYrIRvP 84 (91)
..+++|||||-
T Consensus 37 ~~~~~yRV~vG 47 (77)
T d1utaa_ 37 TNNGWNRVVIG 47 (77)
T ss_dssp ECSSSEEEEES
T ss_pred CCCcEEEEEEC
Confidence 46889999993
No 61
>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=20.21 E-value=26 Score=20.88 Aligned_cols=16 Identities=0% Similarity=0.042 Sum_probs=13.1
Q ss_pred ccCCHHHHHHHHHHhh
Q 034556 59 NAFKREDKEKFEKLRK 74 (91)
Q Consensus 59 n~lse~ek~kfkeL~~ 74 (91)
-+|+++|+++|++-++
T Consensus 136 l~l~~~E~~~L~~s~~ 151 (161)
T d1o6za2 136 WDLDDYEQDLMADAAE 151 (161)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 5799999999987553
No 62
>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}
Probab=20.15 E-value=29 Score=18.61 Aligned_cols=14 Identities=14% Similarity=0.261 Sum_probs=10.4
Q ss_pred cCCHHHHHHHHHHh
Q 034556 60 AFKREDKEKFEKLR 73 (91)
Q Consensus 60 ~lse~ek~kfkeL~ 73 (91)
|||++|.+.++++-
T Consensus 1 qLs~eei~el~~~F 14 (73)
T d2pq3a1 1 QLTEEQIAEFKEAF 14 (73)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHH
Confidence 58888887777654
Done!