BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034559
(91 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZV25|P2C23_ARATH Probable protein phosphatase 2C 23 OS=Arabidopsis thaliana GN=PLL4
PE=2 SV=1
Length = 654
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 12/92 (13%)
Query: 4 TSPANSSISTTPLVGG-GSSSNNTATDEFH--FPSDL--ISIQDRKDEALQVLRSDLMAT 58
+ P + PL G G T +D+F F L + + RK ++VLR + T
Sbjct: 131 SGPIERGFMSGPLDGSSGPIDGKTGSDQFQRSFSHGLANLRVGSRKGSLVRVLRRAISKT 190
Query: 59 LNK-------EVKSLDEDNWMFEGPRSHIHLI 83
+ + +K + E +W+F ++ IH I
Sbjct: 191 ITRGQNSIVAPIKPVKEPDWVFGSDKTRIHQI 222
>sp|Q9LT48|PP244_ARATH Pentatricopeptide repeat-containing protein At3g20730
OS=Arabidopsis thaliana GN=PCMP-E94 PE=2 SV=1
Length = 565
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 11 ISTTPLVGGGSSSNNTATDEFHFPSDLISIQDRKDEAL 48
+S T L+ G S NN +D F D+I ++ + DE +
Sbjct: 282 LSCTALITGFSQQNNCTSDAFDIFKDMIRMKTKMDEVV 319
>sp|Q9Z2Z9|GFPT2_MOUSE Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2
OS=Mus musculus GN=Gfpt2 PE=2 SV=3
Length = 682
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 36 DLISIQDRKDEALQVLRSDLMATLNKEVKSLDE 68
D IS+Q+R+ E ++ LRS + L KEV SLDE
Sbjct: 496 DRISLQNRRQEIIRGLRS--LPELIKEVLSLDE 526
>sp|Q1GUX4|SYE1_SPHAL Glutamate--tRNA ligase 1 OS=Sphingopyxis alaskensis (strain DSM
13593 / LMG 18877 / RB2256) GN=gltX1 PE=3 SV=1
Length = 490
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 31 FHFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSLDEDNWMFE 74
F F D + + ++ E L L+A + + ++ LD+D+W E
Sbjct: 384 FLFAPDPMPVDEKAAEVLASAPEGLLAAMTQRLRGLDDDHWTSE 427
>sp|Q865S3|ARHG2_CANFA Rho guanine nucleotide exchange factor 2 OS=Canis familiaris
GN=ARHGEF2 PE=2 SV=1
Length = 986
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 10 SISTTPLVGGGSSSN--------NTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNK 61
S+STT + G S + + +TD + + +S++ DE +V+ S+LM+
Sbjct: 149 SVSTTNIAGHFSDESPLGLRRILSQSTDSLNMRNRALSVESLIDEGAEVIYSELMSDFET 208
Query: 62 EVKSLDEDNW 71
+ + D+W
Sbjct: 209 DERDFAADSW 218
>sp|Q5FVC2|ARHG2_RAT Rho guanine nucleotide exchange factor 2 OS=Rattus norvegicus
GN=Arhgef2 PE=2 SV=1
Length = 985
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 10 SISTTPLVGGGSSSN--------NTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNK 61
S+STT + G + + + +TD + + +S++ DE ++V ++LM+
Sbjct: 149 SVSTTNIAGHFNDESPLGLRQILSQSTDSLNMRNRTLSVESLIDEGVEVFYNELMSDFEM 208
Query: 62 EVKSLDEDNW 71
+ K + D+W
Sbjct: 209 DEKDFEADSW 218
>sp|Q60875|ARHG2_MOUSE Rho guanine nucleotide exchange factor 2 OS=Mus musculus GN=Arhgef2
PE=1 SV=4
Length = 985
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 10 SISTTPLVGGGSSSN--------NTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNK 61
S+STT + G + + + +TD + + +S++ DE ++V ++LM+
Sbjct: 149 SVSTTNIAGHFNDESPLGLRQILSQSTDSLNMRNRTLSVESLIDEGVEVFYNELMSDFEM 208
Query: 62 EVKSLDEDNW 71
+ K + D+W
Sbjct: 209 DEKDFEADSW 218
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.124 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,531,604
Number of Sequences: 539616
Number of extensions: 1029112
Number of successful extensions: 3222
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3213
Number of HSP's gapped (non-prelim): 17
length of query: 91
length of database: 191,569,459
effective HSP length: 61
effective length of query: 30
effective length of database: 158,652,883
effective search space: 4759586490
effective search space used: 4759586490
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)