Query 034559
Match_columns 91
No_of_seqs 17 out of 19
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 06:13:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mww_A Hypothetical protein HI 65.8 13 0.00045 23.3 4.9 45 43-87 10-69 (128)
2 3eh0_A UDP-3-O-[3-hydroxymyris 65.8 10 0.00036 27.7 4.9 35 33-67 305-341 (341)
3 2ju4_A GMP-PDE gamma, retinal 64.2 2.3 7.8E-05 28.8 1.0 19 1-19 1-19 (87)
4 1use_A VAsp, vasodilator-stimu 62.6 8.1 0.00028 23.2 3.2 16 48-63 9-24 (45)
5 3v86_A De novo design helix; c 55.4 10 0.00035 20.8 2.5 21 44-66 6-26 (27)
6 1zxa_A CGMP-dependent protein 51.8 19 0.00066 22.7 3.8 31 36-66 15-51 (67)
7 3abf_A 4-oxalocrotonate tautom 51.0 12 0.00041 20.3 2.4 33 43-75 12-55 (64)
8 4dzn_A Coiled-coil peptide CC- 49.9 11 0.00036 21.5 2.1 18 48-66 4-21 (33)
9 1gk7_A Vimentin; intermediate 46.3 8 0.00028 21.9 1.2 30 44-74 4-33 (39)
10 1otf_A 4-oxalocrotonate tautom 45.8 16 0.00055 19.6 2.4 33 43-75 11-54 (62)
11 1t3b_A Thiol:disulfide interch 45.3 10 0.00034 25.6 1.8 57 19-83 33-91 (211)
12 2kxo_A Cell division topologic 41.9 22 0.00074 23.2 2.9 36 38-74 25-65 (95)
13 2opa_A Probable tautomerase YW 41.7 21 0.00073 19.1 2.5 33 43-75 11-54 (61)
14 3r84_A Mediator of RNA polymer 40.6 8.9 0.0003 25.2 0.9 16 54-69 58-73 (86)
15 1eej_A Thiol:disulfide interch 40.1 8.6 0.00029 25.9 0.8 46 30-83 44-91 (216)
16 2aal_A Malonate semialdehyde d 40.0 28 0.00096 21.9 3.2 19 65-83 45-72 (131)
17 3pmo_A UDP-3-O-[3-hydroxymyris 39.8 53 0.0018 24.6 5.1 37 32-68 326-364 (372)
18 3ll5_A Gamma-glutamyl kinase r 37.4 20 0.0007 25.3 2.4 46 16-61 45-94 (249)
19 2x4k_A 4-oxalocrotonate tautom 37.3 36 0.0012 17.8 3.0 33 43-75 14-57 (63)
20 3h36_A Polyribonucleotide nucl 36.7 35 0.0012 20.7 3.2 19 44-62 37-55 (93)
21 4e79_A UDP-3-O-acylglucosamine 36.0 48 0.0016 24.5 4.4 36 32-67 309-351 (357)
22 3mb2_A 4-oxalocrotonate tautom 34.9 36 0.0012 19.4 2.9 33 43-75 12-55 (72)
23 1rh4_A Right-handed coiled coi 33.2 57 0.0019 18.6 3.4 22 40-61 5-28 (35)
24 3ry0_A Putative tautomerase; o 32.9 44 0.0015 18.5 3.0 33 43-75 11-54 (65)
25 1whu_A Polynucleotide phosphor 31.3 39 0.0013 21.1 2.8 17 43-59 43-59 (104)
26 3m20_A 4-oxalocrotonate tautom 30.1 54 0.0018 18.2 3.0 12 64-75 42-53 (62)
27 4b8u_A 3-hydroxydecanoyl-[acyl 30.0 22 0.00075 25.1 1.6 45 32-76 70-116 (171)
28 1otg_A 5-carboxymethyl-2-hydro 29.8 35 0.0012 22.0 2.4 34 42-75 70-119 (125)
29 4gwp_A Mediator of RNA polymer 29.2 17 0.00059 25.3 0.9 15 54-68 61-75 (115)
30 3ll9_A Isopentenyl phosphate k 28.6 44 0.0015 23.9 3.0 47 15-61 45-100 (269)
31 3p0l_A Steroidogenic acute reg 27.7 52 0.0018 22.0 3.1 20 67-86 29-49 (221)
32 1gmj_A ATPase inhibitor; coile 27.6 11 0.00038 24.9 -0.3 22 41-62 35-56 (84)
33 3m21_A Probable tautomerase HP 27.5 71 0.0024 17.8 3.2 12 64-75 46-57 (67)
34 3r6f_A HIT family protein; str 27.4 50 0.0017 21.0 2.8 12 75-86 91-102 (135)
35 2kyg_C Protein CBFA2T1; protei 27.3 51 0.0017 19.2 2.6 20 42-61 17-37 (38)
36 2rsm_A Probable peptide chain 27.3 33 0.0011 23.6 2.1 37 26-62 68-111 (115)
37 3he5_A Synzip1; heterodimeric 26.0 32 0.0011 20.9 1.6 17 50-66 27-43 (49)
38 1u5l_A Prion protein; pRNP, PR 25.6 24 0.00083 24.4 1.1 22 15-36 2-26 (108)
39 1f0y_A HCDH, L-3-hydroxyacyl-C 24.9 18 0.00062 25.2 0.4 48 11-61 15-64 (302)
40 1t3j_A Mitofusin 1; coiled coi 23.9 43 0.0015 22.3 2.1 22 45-67 46-67 (96)
41 2nnu_B HUNK1 protein, bromodom 23.9 45 0.0015 18.1 1.8 12 51-62 9-20 (26)
42 3kqg_A Langerin, C-type lectin 23.8 57 0.002 20.7 2.6 18 38-55 8-25 (182)
43 2kfe_A Meucin-24; alpha-helix, 23.2 95 0.0032 16.7 3.0 19 43-61 2-20 (26)
44 2rg4_A Uncharacterized protein 23.1 92 0.0031 21.7 3.8 47 41-90 66-116 (216)
45 3s9d_A Interferon alpha-2; hum 22.8 38 0.0013 23.8 1.7 25 29-53 37-61 (168)
46 3se4_B Interferon omega-1; typ 22.7 91 0.0031 22.0 3.7 25 29-53 39-64 (177)
47 1hfo_A Migration inhibitory fa 22.6 80 0.0027 19.0 3.0 24 41-64 65-88 (113)
48 3piv_A Interferon; zebrafish, 22.4 72 0.0025 22.3 3.1 23 29-53 31-57 (164)
49 3r9j_C MINE, cell division top 22.0 9.6 0.00033 24.3 -1.4 34 40-74 16-53 (77)
50 4egu_A Histidine triad (HIT) p 21.7 1.2E+02 0.0042 18.4 3.8 15 76-90 99-115 (119)
51 2np0_B Synaptotagmin-2; botuli 21.4 70 0.0024 16.4 2.2 18 44-61 4-21 (26)
52 1wu3_I Interferon beta, IFN-be 21.4 75 0.0026 22.2 3.0 24 29-53 34-57 (161)
53 3oq3_A IFN-alpha-5, interferon 21.2 99 0.0034 21.6 3.6 25 29-53 34-59 (166)
54 3c6v_A Probable tautomerase/de 21.2 93 0.0032 21.2 3.4 35 41-75 93-138 (161)
55 2v6i_A RNA helicase; membrane, 21.1 1.7E+02 0.0057 21.7 5.0 43 36-78 335-382 (431)
56 2r55_A STAR-related lipid tran 20.7 1.5E+02 0.0052 19.7 4.3 42 42-86 19-60 (231)
57 2b8n_A Glycerate kinase, putat 20.7 66 0.0023 26.1 2.9 61 16-83 132-198 (429)
58 1x3l_A Hypothetical protein PH 20.2 97 0.0033 25.1 3.8 60 16-83 128-193 (440)
59 2iu8_A LPXD, UDP-3-O-[3-hydrox 20.2 1.1E+02 0.0036 22.5 3.7 36 33-68 332-369 (374)
60 1uvq_C Orexin; immunology, MHC 20.1 41 0.0014 19.1 1.1 15 6-20 8-22 (33)
61 3mlc_A FG41 malonate semialdeh 20.1 56 0.0019 21.3 2.0 37 42-79 75-122 (136)
62 1uiz_A MIF, macrophage migrati 20.0 96 0.0033 18.8 3.0 24 41-64 66-89 (115)
No 1
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=65.82 E-value=13 Score=23.28 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH-----------hcccccCCcccccccc----eeEeeecCc
Q 034559 43 RKDEALQVLRSDLMATLNKE-----------VKSLDEDNWMFEGPRS----HIHLISTAA 87 (91)
Q Consensus 43 RKDeam~~LKsdlmaaL~kE-----------VKsLdeD~W~F~~prS----rI~LiSr~g 87 (91)
|-+|--..|..++-++|-+. +-..++++|.|.|+|+ .|++.+.+|
T Consensus 10 ~s~e~~~~l~~~i~~al~~~lg~p~~~~~v~i~~~~~~~~~~gg~~~~~~~~i~i~~~~g 69 (128)
T 1mww_A 10 KLAPRREKLAEVIYNSLHLGLDIPKGKHAIRFLCLEKEDFYYPFDRSDDYTVIEINLMAG 69 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCTTSSCEEEEEECGGGEECCTTSCTTCEEEEEEEETT
T ss_pred CCHHHHHHHHHHHHHHHHHHHCcChHHEEEEEEEeChHHeecCCCCCCCcEEEEEEECCC
Confidence 44555556666666666554 3355678999999666 577765544
No 2
>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}
Probab=65.81 E-value=10 Score=27.73 Aligned_cols=35 Identities=11% Similarity=0.229 Sum_probs=20.6
Q ss_pred CCCCcchhhhhhHHHHHHHHH--HHHHHHHHHhcccc
Q 034559 33 FPSDLISIQDRKDEALQVLRS--DLMATLNKEVKSLD 67 (91)
Q Consensus 33 fp~D~is~~~RKDeam~~LKs--dlmaaL~kEVKsLd 67 (91)
+|+-.+....|....+..|.. +-+.+|+|+++.||
T Consensus 305 ~Pa~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~ 341 (341)
T 3eh0_A 305 IPLQPNKVWRKTAALVMNIDDMSKRLKSLERKVNQQD 341 (341)
T ss_dssp CCCEEHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCC
T ss_pred cCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcC
Confidence 677776655444444444432 33456788888775
No 3
>2ju4_A GMP-PDE gamma, retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit gamma...; intrinsic disordered protein; HET: RCY; NMR {Bos taurus}
Probab=64.18 E-value=2.3 Score=28.76 Aligned_cols=19 Identities=37% Similarity=0.564 Sum_probs=16.3
Q ss_pred CCCCCCCCcceeccceecC
Q 034559 1 MNSTSPANSSISTTPLVGG 19 (91)
Q Consensus 1 mnssSPA~S~vSttav~gg 19 (91)
||+++|+.|..+++.+.+|
T Consensus 1 Mn~~~p~~~~~~~~~~~~g 19 (87)
T 2ju4_A 1 MNLEPPKAECRSATRVMGG 19 (87)
T ss_dssp CCSSCCCCCCTTCSSSSCS
T ss_pred CCCCCCCcccccCCccCCC
Confidence 9999999999988876655
No 4
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=62.56 E-value=8.1 Score=23.23 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 034559 48 LQVLRSDLMATLNKEV 63 (91)
Q Consensus 48 m~~LKsdlmaaL~kEV 63 (91)
|..||.||++.++||+
T Consensus 9 le~~KqEIL~E~RkEl 24 (45)
T 1use_A 9 LQRVKQELLEEVKKEL 24 (45)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 5
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=55.40 E-value=10 Score=20.78 Aligned_cols=21 Identities=43% Similarity=0.640 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhccc
Q 034559 44 KDEALQVLRSDLMATLNKEVKSL 66 (91)
Q Consensus 44 KDeam~~LKsdlmaaL~kEVKsL 66 (91)
|||+ -+||-++ .+|..|||.|
T Consensus 6 kdev-gelkgev-ralkdevkdl 26 (27)
T 3v86_A 6 KDEV-GELKGEV-RALKDEVKDL 26 (27)
T ss_dssp HHHH-HHHHHHH-HHHHHHHHHH
T ss_pred hHHH-HHHHhHH-HHHHHHHhcc
Confidence 5554 4677776 4688888876
No 6
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=51.76 E-value=19 Score=22.68 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=24.0
Q ss_pred CcchhhhhhHHHHHHH------HHHHHHHHHHHhccc
Q 034559 36 DLISIQDRKDEALQVL------RSDLMATLNKEVKSL 66 (91)
Q Consensus 36 D~is~~~RKDeam~~L------KsdlmaaL~kEVKsL 66 (91)
+++.++..|||-|.+| |.+....|+.+..-+
T Consensus 15 ~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 15 DFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999 778888888876543
No 7
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=50.97 E-value=12 Score=20.34 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHHH-----------hcccccCCccccc
Q 034559 43 RKDEALQVLRSDLMATLNKE-----------VKSLDEDNWMFEG 75 (91)
Q Consensus 43 RKDeam~~LKsdlmaaL~kE-----------VKsLdeD~W~F~~ 75 (91)
|-+|.-+.|-.+|.++|.+. +...+.++|-|.|
T Consensus 12 ~s~eqk~~l~~~lt~~l~~~lg~~~~~v~V~i~e~~~~~w~~gG 55 (64)
T 3abf_A 12 RPPEKKRELVRRLTEMASRLLGEPYEEVRVILYEVRRDQWAAGG 55 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECGGGEEETT
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHHeeECC
Confidence 44555566777777777664 3445667788776
No 8
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=49.93 E-value=11 Score=21.51 Aligned_cols=18 Identities=33% Similarity=0.695 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 034559 48 LQVLRSDLMATLNKEVKSL 66 (91)
Q Consensus 48 m~~LKsdlmaaL~kEVKsL 66 (91)
+..||.++ ++|.||+..|
T Consensus 4 iaalkqei-aalkkeiaal 21 (33)
T 4dzn_A 4 IAALKQEI-AALKKEIAAL 21 (33)
T ss_dssp HHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHH
Confidence 34566654 5666666554
No 9
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=46.28 E-value=8 Score=21.90 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccccCCcccc
Q 034559 44 KDEALQVLRSDLMATLNKEVKSLDEDNWMFE 74 (91)
Q Consensus 44 KDeam~~LKsdlmaaL~kEVKsLdeD~W~F~ 74 (91)
..|.|+.|-.-+-..|+| |++|...|++.+
T Consensus 4 EKe~mq~LNdrlAsyidk-VR~LE~~N~~Le 33 (39)
T 1gk7_A 4 EKVELQELNDRFANYIDK-VRFLEQQNKILL 33 (39)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 346788888777777765 999998888765
No 10
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=45.83 E-value=16 Score=19.58 Aligned_cols=33 Identities=15% Similarity=0.368 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHHHHHH-----------hcccccCCccccc
Q 034559 43 RKDEALQVLRSDLMATLNKE-----------VKSLDEDNWMFEG 75 (91)
Q Consensus 43 RKDeam~~LKsdlmaaL~kE-----------VKsLdeD~W~F~~ 75 (91)
|-+|.-+.|=..|.++|.+. +...+.++|-|.|
T Consensus 11 rs~e~k~~l~~~i~~~l~~~lg~p~~~v~v~i~e~~~~~w~~~G 54 (62)
T 1otf_A 11 RTDEQKETLIRQVSEAMANSLDAPLERVRVLITEMPKNHFGIGG 54 (62)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEECGGGEEETT
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeCHHHeEECC
Confidence 44555556666666666664 3456677887765
No 11
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=45.27 E-value=10 Score=25.58 Aligned_cols=57 Identities=11% Similarity=0.194 Sum_probs=34.6
Q ss_pred CCCCCcccccccCCCCCCcchhhhhh--HHHHHHHHHHHHHHHHHHhcccccCCcccccccceeEee
Q 034559 19 GGSSSNNTATDEFHFPSDLISIQDRK--DEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLI 83 (91)
Q Consensus 19 gggs~~~~a~ddfhfp~D~is~~~RK--Deam~~LKsdlmaaL~kEVKsLdeD~W~F~~prSrI~Li 83 (91)
||+-.+...--++-+.-+++++..+| +-.-+.+ .+.++.|+++-|.+.+|...+.++
T Consensus 33 ~~~~~y~~~dg~~~i~G~l~d~~~~~~~~lt~~~~--------~~~~~~l~~~~~~~g~~~~k~~vv 91 (211)
T 1t3b_A 33 DQGILYVSEDGKYLFEGKLYELTNNGPVDVAGKIL--------VDKLNSYKDEMIVYPAKNEKHVVT 91 (211)
T ss_dssp TTEECEEESSSSCEECSCCCCCTTTSCCCTHHHHH--------HHHHHTTGGGSEEECCTTCSEEEE
T ss_pred CCEEEEEcCCCCEEEEeeEEEcCCCcccccchHHH--------HhhhhhccccceEecCCCCCEEEE
Confidence 33333333333466677888888887 4332222 245667888999998777665554
No 12
>2kxo_A Cell division topological specificity factor; MINE, MIND-binding, to specificity, cell cycle; NMR {Neisseria gonorrhoeae}
Probab=41.95 E-value=22 Score=23.25 Aligned_cols=36 Identities=36% Similarity=0.434 Sum_probs=27.2
Q ss_pred chhhhhh-----HHHHHHHHHHHHHHHHHHhcccccCCcccc
Q 034559 38 ISIQDRK-----DEALQVLRSDLMATLNKEVKSLDEDNWMFE 74 (91)
Q Consensus 38 is~~~RK-----Deam~~LKsdlmaaL~kEVKsLdeD~W~F~ 74 (91)
|=+.+|. .+.|..||.||++.+.|=|+ .|+|+-.+.
T Consensus 25 ILahdR~~~~~~pd~l~~lk~eIl~VIsKYv~-Id~~~v~V~ 65 (95)
T 2kxo_A 25 IIAQERAQEGQTPDYLPTLRKALMEVLSKYVN-VSLDNIRIS 65 (95)
T ss_dssp EEEEEECSSCCCCCSHHHHHHHHHHHHHHHSC-CCTTSEEEE
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhee-cchhheEEE
Confidence 4445554 25788999999999999998 687766553
No 13
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=41.75 E-value=21 Score=19.08 Aligned_cols=33 Identities=18% Similarity=0.430 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH-----------hcccccCCccccc
Q 034559 43 RKDEALQVLRSDLMATLNKE-----------VKSLDEDNWMFEG 75 (91)
Q Consensus 43 RKDeam~~LKsdlmaaL~kE-----------VKsLdeD~W~F~~ 75 (91)
|-+|.-+.|=..|.++|.+. +...+.++|-|.|
T Consensus 11 rs~eqk~~l~~~i~~~l~~~lg~~~~~v~V~i~e~~~~~w~~gG 54 (61)
T 2opa_A 11 RTDEQKRNLVEKVTEAVKETTGASEEKIVVFIEEMRKDHYAVAG 54 (61)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETT
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEEcCHHHeeECC
Confidence 44555555666666666664 3456677887766
No 14
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=40.57 E-value=8.9 Score=25.21 Aligned_cols=16 Identities=38% Similarity=0.553 Sum_probs=13.8
Q ss_pred HHHHHHHHHhcccccC
Q 034559 54 DLMATLNKEVKSLDED 69 (91)
Q Consensus 54 dlmaaL~kEVKsLdeD 69 (91)
++-..|+||||-|||.
T Consensus 58 ~v~v~LrkEIk~LdEn 73 (86)
T 3r84_A 58 KSTTQLRKEIQLLDEN 73 (86)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 6677899999999984
No 15
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=40.11 E-value=8.6 Score=25.85 Aligned_cols=46 Identities=9% Similarity=0.242 Sum_probs=29.9
Q ss_pred cCCCCCCcchhhhhhH--HHHHHHHHHHHHHHHHHhcccccCCcccccccceeEee
Q 034559 30 EFHFPSDLISIQDRKD--EALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLI 83 (91)
Q Consensus 30 dfhfp~D~is~~~RKD--eam~~LKsdlmaaL~kEVKsLdeD~W~F~~prSrI~Li 83 (91)
++-+--++++...+++ -.-+ .+.+.+++|+++.|.+..|...+.++
T Consensus 44 ~~~i~G~l~d~~~~~~~~lt~~--------~~~~~~~~l~~~~~~~g~~~~k~~vv 91 (216)
T 1eej_A 44 KHIIQGPMYDVSGTAPVNVTNK--------MLLKQLNALEKEMIVYKAPQEKHVIT 91 (216)
T ss_dssp CEEEESCEEECSSSSCEEHHHH--------HHHHHHHTTGGGSEEECCTTCCEEEE
T ss_pred CEEEEeeeEecCCCCccccchH--------HHHHHHHhhhhcCeeecCCCCCEEEE
Confidence 3556678888887762 2211 12256677888999998777666554
No 16
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=40.01 E-value=28 Score=21.90 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=14.7
Q ss_pred ccccCCccccc-----ccc----eeEee
Q 034559 65 SLDEDNWMFEG-----PRS----HIHLI 83 (91)
Q Consensus 65 sLdeD~W~F~~-----prS----rI~Li 83 (91)
..+.++|.|.| +|+ .|++.
T Consensus 45 ~~~~~~~~~~g~~l~~~~~~~~~~I~i~ 72 (131)
T 2aal_A 45 QHRPGEMVLEDTGLGYGRSSAVVLLTVI 72 (131)
T ss_dssp EECTTSEEECCTTSCCCCCTTCEEEEEE
T ss_pred EECHHHcccCCccCCcCCCCCeEEEEEE
Confidence 67889999998 565 67766
No 17
>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}
Probab=39.79 E-value=53 Score=24.60 Aligned_cols=37 Identities=8% Similarity=0.104 Sum_probs=19.5
Q ss_pred CCCCCcchhhhhhHHHHHHHHH--HHHHHHHHHhccccc
Q 034559 32 HFPSDLISIQDRKDEALQVLRS--DLMATLNKEVKSLDE 68 (91)
Q Consensus 32 hfp~D~is~~~RKDeam~~LKs--dlmaaL~kEVKsLde 68 (91)
-+|+..+....|....+..|.. .-+.+|+|+++.|.+
T Consensus 326 G~Pa~~~~~~~~~~~~~~~l~~~~~~~~~l~k~~~~~~~ 364 (372)
T 3pmo_A 326 GTAMQPAAEWKKSAARIRQLDDMARRLQQLEKRLAAVTS 364 (372)
T ss_dssp SCCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHC-----
T ss_pred eCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4688888766555555555543 334567777776643
No 18
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*
Probab=37.45 E-value=20 Score=25.29 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=24.4
Q ss_pred eecCCCCCcccccccCCCCCCcc----hhhhhhHHHHHHHHHHHHHHHHH
Q 034559 16 LVGGGSSSNNTATDEFHFPSDLI----SIQDRKDEALQVLRSDLMATLNK 61 (91)
Q Consensus 16 v~ggggs~~~~a~ddfhfp~D~i----s~~~RKDeam~~LKsdlmaaL~k 61 (91)
||-|||+..........++...+ ....-.+.+|..|-..++++|++
T Consensus 45 lVhGGG~~~~~~~~~~gi~~~~~~~d~~gl~~t~~~~~~ln~~~v~~l~~ 94 (249)
T 3ll5_A 45 VVHGGGSFGHIKAMEFGLPGPKNPRSSIGYSIVHRDMENLDLMVIDAMIE 94 (249)
T ss_dssp EEECCGGGTHHHHHHHTCSEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECccHHHHHHHHHhCCCcCCCccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 45666655544455555555443 22333444455566666666654
No 19
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=37.30 E-value=36 Score=17.84 Aligned_cols=33 Identities=24% Similarity=0.459 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHh-----------cccccCCccccc
Q 034559 43 RKDEALQVLRSDLMATLNKEV-----------KSLDEDNWMFEG 75 (91)
Q Consensus 43 RKDeam~~LKsdlmaaL~kEV-----------KsLdeD~W~F~~ 75 (91)
|-+|.-..|-..|.++|.+.. ...+.++|-|.|
T Consensus 14 ~s~e~k~~l~~~l~~~l~~~lg~p~~~v~v~i~e~~~~~~~~~G 57 (63)
T 2x4k_A 14 RSDEQLKNLVSEVTDAVEKTTGANRQAIHVVIEEMKPNHYGVAG 57 (63)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETT
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCHHHeeECC
Confidence 445555666667777766643 345556676655
No 20
>3h36_A Polyribonucleotide nucleotidyltransferase; polyribonucleotide nucleotidyltransfer structural genomics, PSI-2, protein structure initiative; 1.80A {Streptococcus mutans}
Probab=36.75 E-value=35 Score=20.70 Aligned_cols=19 Identities=11% Similarity=0.249 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 034559 44 KDEALQVLRSDLMATLNKE 62 (91)
Q Consensus 44 KDeam~~LKsdlmaaL~kE 62 (91)
+++++..+|.++++.|..+
T Consensus 37 R~~a~~~ik~~v~~~l~e~ 55 (93)
T 3h36_A 37 SEIATEAVKEHVTAEYEER 55 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4789999999999999643
No 21
>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A
Probab=36.02 E-value=48 Score=24.53 Aligned_cols=36 Identities=11% Similarity=0.021 Sum_probs=21.3
Q ss_pred CCCCCcchhhhhhHHHHHHHHH-------HHHHHHHHHhcccc
Q 034559 32 HFPSDLISIQDRKDEALQVLRS-------DLMATLNKEVKSLD 67 (91)
Q Consensus 32 hfp~D~is~~~RKDeam~~LKs-------dlmaaL~kEVKsLd 67 (91)
-+|+..+....|.-+.+..|.. +-+.+|+|+++.|+
T Consensus 309 G~Pa~~~~~~~~~~~~~~~l~~~r~~~l~~~~~~l~~~~~~l~ 351 (357)
T 4e79_A 309 GTGLFENNHWKKTIVRLRQLADVPLTQITKRLDHIQAQIESLE 351 (357)
T ss_dssp SCCCEEHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHCC-
T ss_pred eCchHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHhhh
Confidence 4677777665555555554433 34556778887775
No 22
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=34.93 E-value=36 Score=19.41 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHHHH-----------hcccccCCccccc
Q 034559 43 RKDEALQVLRSDLMATLNKE-----------VKSLDEDNWMFEG 75 (91)
Q Consensus 43 RKDeam~~LKsdlmaaL~kE-----------VKsLdeD~W~F~~ 75 (91)
|-+|.-..|-..|.++|.+. +...+.++|-|.|
T Consensus 12 rs~eqK~~L~~~it~~l~~~lg~p~~~v~V~i~e~~~~~w~~gG 55 (72)
T 3mb2_A 12 RSTEQKAELARALSAAAAAAFDVPLAEVRLIIQEVPPTHWTVGG 55 (72)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECGGGEEETT
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHHeeECC
Confidence 44555555555555555553 2345678898876
No 23
>1rh4_A Right-handed coiled coil tetramer; de novo design; 1.90A {Synthetic construct} SCOP: k.17.1.1
Probab=33.19 E-value=57 Score=18.63 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=15.5
Q ss_pred hhhhhHHHH--HHHHHHHHHHHHH
Q 034559 40 IQDRKDEAL--QVLRSDLMATLNK 61 (91)
Q Consensus 40 ~~~RKDeam--~~LKsdlmaaL~k 61 (91)
+|-.|+-|. ..+|.++.++|.|
T Consensus 5 aqikkeiayllakikaeilaalkk 28 (35)
T 1rh4_A 5 AQIKKEIAYLLAKIKAEILAALKK 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566554 4678899999876
No 24
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=32.89 E-value=44 Score=18.50 Aligned_cols=33 Identities=21% Similarity=0.455 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH-----------hcccccCCccccc
Q 034559 43 RKDEALQVLRSDLMATLNKE-----------VKSLDEDNWMFEG 75 (91)
Q Consensus 43 RKDeam~~LKsdlmaaL~kE-----------VKsLdeD~W~F~~ 75 (91)
|-+|.-+.|=..|.++|.+. +...+.++|.|.|
T Consensus 11 rs~eqk~~L~~~it~~~~~~lg~p~~~v~V~i~e~~~~~w~~gG 54 (65)
T 3ry0_A 11 RSPQEVAALGEALTAAAHETLGTPVEAVRVIVEETPPERWFVGG 54 (65)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETT
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCHHHeeECC
Confidence 44444555555555555553 3456778888876
No 25
>1whu_A Polynucleotide phosphorylase; 3'-5' RNA exonuclease; pnpase, alpha-helical domain, structural genomics; NMR {Mus musculus} SCOP: a.4.9.1
Probab=31.30 E-value=39 Score=21.15 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHH
Q 034559 43 RKDEALQVLRSDLMATL 59 (91)
Q Consensus 43 RKDeam~~LKsdlmaaL 59 (91)
-+++|+..+|.++++.|
T Consensus 43 eR~~al~~ik~~v~~~l 59 (104)
T 1whu_A 43 SRDEAVNKIRLDTEEHL 59 (104)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45789999999999998
No 26
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=30.14 E-value=54 Score=18.18 Aligned_cols=12 Identities=17% Similarity=0.116 Sum_probs=9.0
Q ss_pred cccccCCccccc
Q 034559 64 KSLDEDNWMFEG 75 (91)
Q Consensus 64 KsLdeD~W~F~~ 75 (91)
...+.++|.|.|
T Consensus 42 ~E~~~~~w~~gG 53 (62)
T 3m20_A 42 HEPPAENVGVGG 53 (62)
T ss_dssp ECCCGGGEEETT
T ss_pred EEeCHHHeEECC
Confidence 456778998877
No 27
>4b8u_A 3-hydroxydecanoyl-[acyl-carrier-protein] dehydrat; lyase, fatty acid biosynthesis, inhibitor, bacterial virulen discovery; HET: IBK; 2.76A {Pseudomonas aeruginosa}
Probab=29.96 E-value=22 Score=25.09 Aligned_cols=45 Identities=18% Similarity=0.094 Sum_probs=25.8
Q ss_pred CCCCCcchhhhhhHHHHHHHHHHHHHHH--HHHhcccccCCcccccc
Q 034559 32 HFPSDLISIQDRKDEALQVLRSDLMATL--NKEVKSLDEDNWMFEGP 76 (91)
Q Consensus 32 hfp~D~is~~~RKDeam~~LKsdlmaaL--~kEVKsLdeD~W~F~~p 76 (91)
|||.|++----===|||.++=.=++... .+....+.-|+|||-+|
T Consensus 70 HFp~~PVMPGvL~~EamaQ~~~~~l~~~~~~~~~~~~~i~~~kFr~~ 116 (171)
T 4b8u_A 70 HFEGDPVMPGCLGLDAMWQLVGFYLGWQGNPGRGRALGSGEVKFFGQ 116 (171)
T ss_dssp SCTTSCCCCHHHHHHHHHHHHHHHHHHTTCCSEEEEEEESCEEECCC
T ss_pred cCCCCCCCCccHHHHHHHHHhhhhhccccCCCeeEEeccceeEEEee
Confidence 8898877433333477876533222111 12245566789999865
No 28
>1otg_A 5-carboxymethyl-2-hydroxymuconate isomerase; 2.10A {Escherichia coli} SCOP: d.80.1.2
Probab=29.76 E-value=35 Score=22.00 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHH---------------hcccccC-Cccccc
Q 034559 42 DRKDEALQVLRSDLMATLNKE---------------VKSLDED-NWMFEG 75 (91)
Q Consensus 42 ~RKDeam~~LKsdlmaaL~kE---------------VKsLdeD-~W~F~~ 75 (91)
-|-+|.-+.|=.+|.++|.+. +..+|.+ +|++.-
T Consensus 70 GRs~eqK~~L~~~v~~~l~~~l~~~~~~~~~~vsv~i~E~~~~~~~~~~~ 119 (125)
T 1otg_A 70 GRSLESRQQAGEMLFELIKTHFAALMESRLLALSFEIEELHPTLNFKQNN 119 (125)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTHHHHTTSEEEEEEEEEECCSSSEEEEEG
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhcCCCceEEEEEEEEcCCccCHHHhh
Confidence 577777777777777777774 4467888 998754
No 29
>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A
Probab=29.17 E-value=17 Score=25.28 Aligned_cols=15 Identities=40% Similarity=0.541 Sum_probs=13.1
Q ss_pred HHHHHHHHHhccccc
Q 034559 54 DLMATLNKEVKSLDE 68 (91)
Q Consensus 54 dlmaaL~kEVKsLde 68 (91)
++--.|+||||-|||
T Consensus 61 ~~a~~LRkEIK~lDe 75 (115)
T 4gwp_A 61 KSTTQLRKEIQLLDE 75 (115)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 566789999999998
No 30
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=28.62 E-value=44 Score=23.89 Aligned_cols=47 Identities=17% Similarity=0.139 Sum_probs=24.1
Q ss_pred ceecCCCCCcccccccCCCCCCcc---------hhhhhhHHHHHHHHHHHHHHHHH
Q 034559 15 PLVGGGSSSNNTATDEFHFPSDLI---------SIQDRKDEALQVLRSDLMATLNK 61 (91)
Q Consensus 15 av~ggggs~~~~a~ddfhfp~D~i---------s~~~RKDeam~~LKsdlmaaL~k 61 (91)
.||-|||+-.+........+.... .-..--++++..|..++.++|++
T Consensus 45 vlVhGGG~~~~~~~~~~gi~~~~~~~~g~~~~~~G~rvT~~~~~~ln~~l~~~L~~ 100 (269)
T 3ll9_A 45 MIVHGAGSFGHPFAGEYRIGSEIENEEDLRRRRFGFALTQNWVKKLNSHVCDALLA 100 (269)
T ss_dssp EEEECCGGGTHHHHHHHTTTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCcHHHHHHHHHcCCCcccccCcccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 355566555554445555555444 22222344555566666666654
No 31
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=27.74 E-value=52 Score=22.01 Aligned_cols=20 Identities=15% Similarity=0.385 Sum_probs=16.2
Q ss_pred ccCCccccc-ccceeEeeecC
Q 034559 67 DEDNWMFEG-PRSHIHLISTA 86 (91)
Q Consensus 67 deD~W~F~~-prSrI~LiSr~ 86 (91)
++++|++.. ....|.+-+|.
T Consensus 29 ~~~gW~~~~~~~~gv~vy~~~ 49 (221)
T 3p0l_A 29 NQEGWKKESQQDNGDKVMSKV 49 (221)
T ss_dssp SCTTCEEEEECTTSCEEEEEE
T ss_pred CCCCCeEeeecCCCcEEEEEE
Confidence 678999995 77888887775
No 32
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=27.62 E-value=11 Score=24.88 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=13.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 034559 41 QDRKDEALQVLRSDLMATLNKE 62 (91)
Q Consensus 41 ~~RKDeam~~LKsdlmaaL~kE 62 (91)
..+-.|.|..||..+.+.|++-
T Consensus 35 rqkekEqL~~LKkkl~~el~~h 56 (84)
T 1gmj_A 35 RARAKEQLAALKKHKENEISHH 56 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567788998765555443
No 33
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=27.51 E-value=71 Score=17.79 Aligned_cols=12 Identities=25% Similarity=0.606 Sum_probs=8.5
Q ss_pred cccccCCccccc
Q 034559 64 KSLDEDNWMFEG 75 (91)
Q Consensus 64 KsLdeD~W~F~~ 75 (91)
...+.++|.|.|
T Consensus 46 ~e~~~~~w~~gG 57 (67)
T 3m21_A 46 DEVDSNNYGLGG 57 (67)
T ss_dssp EECCTTTEEETT
T ss_pred EEeCHHHeEECC
Confidence 446678888876
No 34
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi}
Probab=27.40 E-value=50 Score=21.02 Aligned_cols=12 Identities=25% Similarity=0.268 Sum_probs=10.2
Q ss_pred cccceeEeeecC
Q 034559 75 GPRSHIHLISTA 86 (91)
Q Consensus 75 ~prSrI~LiSr~ 86 (91)
-|+=|||+|-|.
T Consensus 91 v~HlH~HiiPR~ 102 (135)
T 3r6f_A 91 VFHVHFHVIPFV 102 (135)
T ss_dssp SSSCCEEEEECC
T ss_pred ccEEEEEEeccc
Confidence 478899999886
No 35
>2kyg_C Protein CBFA2T1; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=27.30 E-value=51 Score=19.23 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=16.4
Q ss_pred hhhH-HHHHHHHHHHHHHHHH
Q 034559 42 DRKD-EALQVLRSDLMATLNK 61 (91)
Q Consensus 42 ~RKD-eam~~LKsdlmaaL~k 61 (91)
-||- |||++.|..-|..++|
T Consensus 17 WkKaeeavnevkrQam~e~qk 37 (38)
T 2kyg_C 17 WKKAEEAVNEVKRQAMTELQK 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 5665 9999999998887765
No 36
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=27.26 E-value=33 Score=23.61 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=25.8
Q ss_pred cccccCCCCCCcc-hh------hhhhHHHHHHHHHHHHHHHHHH
Q 034559 26 TATDEFHFPSDLI-SI------QDRKDEALQVLRSDLMATLNKE 62 (91)
Q Consensus 26 ~a~ddfhfp~D~i-s~------~~RKDeam~~LKsdlmaaL~kE 62 (91)
.+..=-|.|.-++ .| ..-|+.||..|++-|.+.++++
T Consensus 68 SaVrl~H~PTGivV~~q~~RSQ~~Nr~~A~~~L~~kL~e~~~~~ 111 (115)
T 2rsm_A 68 NCVVLKHVPSGIVVKCHQTRSVDQNRKIARKVLQEKVDVFYNSG 111 (115)
T ss_dssp CCEEEECTTTCCEEEECCSSCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred eeEEEecCCCCcEEEEcCCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 4445568887543 23 3347899999999998887765
No 37
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=26.03 E-value=32 Score=20.92 Aligned_cols=17 Identities=41% Similarity=0.661 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhccc
Q 034559 50 VLRSDLMATLNKEVKSL 66 (91)
Q Consensus 50 ~LKsdlmaaL~kEVKsL 66 (91)
.-|.|+++-|+||+..|
T Consensus 27 lhkkdliaylekeianl 43 (49)
T 3he5_A 27 LHKKDLIAYLEKEIANL 43 (49)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 45779999999998665
No 38
>1u5l_A Prion protein; pRNP, PRP, TSE, membrane protein; NMR {Trachemys scripta} SCOP: d.6.1.1
Probab=25.59 E-value=24 Score=24.37 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=13.1
Q ss_pred ceecC-CC--CCcccccccCCCCCC
Q 034559 15 PLVGG-GS--SSNNTATDEFHFPSD 36 (91)
Q Consensus 15 av~gg-gg--s~~~~a~ddfhfp~D 36 (91)
||||| || -.++.+-.++||-+|
T Consensus 2 avvgglggy~lg~ams~~~i~Fg~~ 26 (108)
T 1u5l_A 2 SVVGGLGGYALGSAMSGMRMNFDRP 26 (108)
T ss_dssp CSCSSCTTSEECCCCSSCCCCCSSH
T ss_pred CceechhHHHHhhhhcCCccccCCh
Confidence 67887 43 223445578888654
No 39
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=24.88 E-value=18 Score=25.24 Aligned_cols=48 Identities=15% Similarity=0.341 Sum_probs=23.6
Q ss_pred eeccceecCC--CCCcccccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHH
Q 034559 11 ISTTPLVGGG--SSSNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNK 61 (91)
Q Consensus 11 vSttav~ggg--gs~~~~a~ddfhfp~D~is~~~RKDeam~~LKsdlmaaL~k 61 (91)
+..-+|+|+| |+.-+..+-.--+ .+-..+|..+.++.++..+-+.|++
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~G~---~V~~~d~~~~~~~~~~~~i~~~l~~ 64 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAATGH---TVVLVDQTEDILAKSKKGIEESLRK 64 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHHHHHH
Confidence 4456899998 3222211111111 1345566666666665555444443
No 40
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=23.93 E-value=43 Score=22.33 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc
Q 034559 45 DEALQVLRSDLMATLNKEVKSLD 67 (91)
Q Consensus 45 Deam~~LKsdlmaaL~kEVKsLd 67 (91)
|++...|+.|| +.|++|+..||
T Consensus 46 d~t~~eL~~EI-~~L~~eI~~LE 67 (96)
T 1t3j_A 46 DMTQKHLEEEI-ARLSKEIDQLE 67 (96)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHH
Confidence 34444555443 45666665554
No 41
>2nnu_B HUNK1 protein, bromodomain-containing protein 4; protein-peptide complex, helical peptide, three helix bundle, amphipathic helix, transcription; 1.59A {Homo sapiens}
Probab=23.85 E-value=45 Score=18.11 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHH
Q 034559 51 LRSDLMATLNKE 62 (91)
Q Consensus 51 LKsdlmaaL~kE 62 (91)
+.||||++.+.-
T Consensus 9 ~QSDlMa~FEen 20 (26)
T 2nnu_B 9 FQSDLLSIFEEN 20 (26)
T ss_pred hHHHHHHHHHHH
Confidence 679999988753
No 42
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=23.78 E-value=57 Score=20.73 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=8.8
Q ss_pred chhhhhhHHHHHHHHHHH
Q 034559 38 ISIQDRKDEALQVLRSDL 55 (91)
Q Consensus 38 is~~~RKDeam~~LKsdl 55 (91)
|..+.|.-++|..|+..|
T Consensus 8 ~~~l~~~~~~~~~l~~~~ 25 (182)
T 3kqg_A 8 IPELKSDLEKASALNTKI 25 (182)
T ss_dssp -----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456677777777766644
No 43
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=23.20 E-value=95 Score=16.74 Aligned_cols=19 Identities=26% Similarity=0.316 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 034559 43 RKDEALQVLRSDLMATLNK 61 (91)
Q Consensus 43 RKDeam~~LKsdlmaaL~k 61 (91)
|+.|.|.-+|.-|-++-+|
T Consensus 2 rgkei~~kiK~kl~~akdK 20 (26)
T 2kfe_A 2 RGREFMSNLKEKLSGVKEK 20 (26)
T ss_dssp TTHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHH
Confidence 6789999999988887766
No 44
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A
Probab=23.07 E-value=92 Score=21.65 Aligned_cols=47 Identities=15% Similarity=0.052 Sum_probs=30.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhcccc--c--CCcccccccceeEeeecCcccC
Q 034559 41 QDRKDEALQVLRSDLMATLNKEVKSLD--E--DNWMFEGPRSHIHLISTAASFI 90 (91)
Q Consensus 41 ~~RKDeam~~LKsdlmaaL~kEVKsLd--e--D~W~F~~prSrI~LiSr~g~~~ 90 (91)
+.+++..++.|+..|.+.+.+=++.|. . ..|.+. ++.+| +.++|+|.
T Consensus 66 l~~~~p~~~~L~~~i~~~~~~~~~~l~~~~~~~~~~i~--~~W~~-~~~~G~~~ 116 (216)
T 2rg4_A 66 LPWRFPIFADLVKSLDAHVAAFAEDLEFELDGKALRLE--DIWIN-ILPEGGVH 116 (216)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTCCCEEE--EEEEE-EECTTCCE
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHcCCCCCCCceEEe--eEEEE-EcCCCCcc
Confidence 457788999999988888887777653 2 233332 33343 34777764
No 45
>3s9d_A Interferon alpha-2; human, type I interferons, IFNA2, ifnar2, SUB-complex of the interferon signaling complex; 2.00A {Homo sapiens} PDB: 3se3_B* 2lms_A* 1itf_A 2hym_B 2ksx_A 2kz1_A 2lag_A 1rh2_A 3ux9_A
Probab=22.79 E-value=38 Score=23.79 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=14.0
Q ss_pred ccCCCCCCcchhhhhhHHHHHHHHH
Q 034559 29 DEFHFPSDLISIQDRKDEALQVLRS 53 (91)
Q Consensus 29 ddfhfp~D~is~~~RKDeam~~LKs 53 (91)
.||.||-+....|..|++|..++-.
T Consensus 37 ~dF~fP~e~~~~q~qk~qa~~~l~e 61 (168)
T 3s9d_A 37 HDFGFPQEEFGNQFQKAETIPVLAA 61 (168)
T ss_dssp CCCCCCGGGC-------CCHHHHHH
T ss_pred CCCCCCHHHHhhhhhHHHHHHHHHH
Confidence 5999999988557788887766553
No 46
>3se4_B Interferon omega-1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens}
Probab=22.75 E-value=91 Score=21.98 Aligned_cols=25 Identities=28% Similarity=0.585 Sum_probs=17.5
Q ss_pred ccCCCCCCcchh-hhhhHHHHHHHHH
Q 034559 29 DEFHFPSDLISI-QDRKDEALQVLRS 53 (91)
Q Consensus 29 ddfhfp~D~is~-~~RKDeam~~LKs 53 (91)
.||.||-+..+. |..|.+|..++-.
T Consensus 39 ~dF~fP~e~~~~~q~qk~qa~~~l~e 64 (177)
T 3se4_B 39 RDFRFPQEMVKGSQLQKAHVMSVLHE 64 (177)
T ss_dssp CCCCCCTTCC-----CHHHHHHHHHH
T ss_pred CCCCCCHHHcccccccHHHHHHHHHH
Confidence 599999998864 5689888887664
No 47
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=22.56 E-value=80 Score=19.00 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=17.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhc
Q 034559 41 QDRKDEALQVLRSDLMATLNKEVK 64 (91)
Q Consensus 41 ~~RKDeam~~LKsdlmaaL~kEVK 64 (91)
.-|..|.-..|=..|.+.|.++..
T Consensus 65 ~g~~~eqk~~l~~~i~~~l~~~lg 88 (113)
T 1hfo_A 65 GGIEPSRNRDHSAKLFDHLNTKLG 88 (113)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhC
Confidence 347777777888888888887653
No 48
>3piv_A Interferon; zebrafish, cytokine; 2.09A {Danio rerio}
Probab=22.41 E-value=72 Score=22.26 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=16.3
Q ss_pred ccCCCCCCcc---hh-hhhhHHHHHHHHH
Q 034559 29 DEFHFPSDLI---SI-QDRKDEALQVLRS 53 (91)
Q Consensus 29 ddfhfp~D~i---s~-~~RKDeam~~LKs 53 (91)
.||.||.+.. +. |. |+.| .++-.
T Consensus 31 ~dF~fP~e~~~~~~~~q~-k~qa-~v~~e 57 (164)
T 3piv_A 31 LETPFPSRLYTLMDKSKV-EDQV-KFLVL 57 (164)
T ss_dssp CCSCCCHHHHHHHHTSCH-HHHH-HHHHH
T ss_pred CCCCCcHHHHcccccchH-HHHH-HHHHH
Confidence 7999999988 33 45 7776 55544
No 49
>3r9j_C MINE, cell division topological specificity factor; ATPase, protein complex, bacterial cell division inhibitor; HET: ADP; 4.30A {Escherichia coli} PDB: 1ev0_A
Probab=22.05 E-value=9.6 Score=24.29 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=25.5
Q ss_pred hhhhh----HHHHHHHHHHHHHHHHHHhcccccCCcccc
Q 034559 40 IQDRK----DEALQVLRSDLMATLNKEVKSLDEDNWMFE 74 (91)
Q Consensus 40 ~~~RK----Deam~~LKsdlmaaL~kEVKsLdeD~W~F~ 74 (91)
+++|. .+.|..||.||++.+.|=|. .|.+.-.+.
T Consensus 16 ahdR~~~~~pd~l~~lk~eIl~VIsKYv~-Id~~~v~v~ 53 (77)
T 3r9j_C 16 AERRRSDAEPHYLPQLRKDILEVICKYVQ-IDPEMVTVQ 53 (77)
T ss_dssp HHHHHHTTSCSSHHHHHHHHTTGGGTTSC-CCCSCCCCE
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHhhee-cCcccEEEE
Confidence 45565 34688999999999999887 677765543
No 50
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}
Probab=21.71 E-value=1.2e+02 Score=18.43 Aligned_cols=15 Identities=13% Similarity=0.401 Sum_probs=12.0
Q ss_pred ccceeEeeecC--cccC
Q 034559 76 PRSHIHLISTA--ASFI 90 (91)
Q Consensus 76 prSrI~LiSr~--g~~~ 90 (91)
|+-|+|+|.|+ |.|.
T Consensus 99 ~HlH~Hiip~~~~~~~~ 115 (119)
T 4egu_A 99 KHLHYHILAGKKLPNYE 115 (119)
T ss_dssp CSCCEEEEESSCCCCGG
T ss_pred CEEEEEEeCCcccCccC
Confidence 68899999997 5554
No 51
>2np0_B Synaptotagmin-2; botulinum, neurotoxin, synaptotagamin, receptor, hydrolase; 2.62A {Mus musculus}
Probab=21.42 E-value=70 Score=16.40 Aligned_cols=18 Identities=17% Similarity=0.495 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 034559 44 KDEALQVLRSDLMATLNK 61 (91)
Q Consensus 44 KDeam~~LKsdlmaaL~k 61 (91)
++..+..+|.++|..|+|
T Consensus 4 ~~d~~~~~k~kf~nel~k 21 (26)
T 2np0_B 4 QEDMFAKLKEKFFNEINK 21 (26)
T ss_pred cchHHHHHHHHHHHHHHh
Confidence 445566677777777743
No 52
>1wu3_I Interferon beta, IFN-beta; alpha-helix-bundle, cytokine; 2.15A {Mus musculus} SCOP: a.26.1.3 PDB: 1ifa_A
Probab=21.36 E-value=75 Score=22.15 Aligned_cols=24 Identities=13% Similarity=0.333 Sum_probs=19.5
Q ss_pred ccCCCCCCcchhhhhhHHHHHHHHH
Q 034559 29 DEFHFPSDLISIQDRKDEALQVLRS 53 (91)
Q Consensus 29 ddfhfp~D~is~~~RKDeam~~LKs 53 (91)
-||.||-.. ..|..|..|..++-.
T Consensus 34 ~df~fP~e~-~~q~qk~~a~~~~~e 57 (161)
T 1wu3_I 34 ADFKIPMEM-TEKMQKSYTAFAIQE 57 (161)
T ss_dssp CCCCCCGGG-GSCCCHHHHHHHHHH
T ss_pred ccCCCCHHH-HhHhHHHHHHHHHHH
Confidence 589999999 888889888776554
No 53
>3oq3_A IFN-alpha-5, interferon alpha-5; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Mus musculus} SCOP: a.26.1.3
Probab=21.25 E-value=99 Score=21.58 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=19.2
Q ss_pred ccCCCCCCcchh-hhhhHHHHHHHHH
Q 034559 29 DEFHFPSDLISI-QDRKDEALQVLRS 53 (91)
Q Consensus 29 ddfhfp~D~is~-~~RKDeam~~LKs 53 (91)
.||.||-+..+. |..|..|..++-.
T Consensus 34 ~dF~fP~e~~~~~q~qk~qa~~~~~e 59 (166)
T 3oq3_A 34 KDFGFPQEKVGAQQIQEAQAIPVLSE 59 (166)
T ss_dssp CCCCCCSTTSCTTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHcccccccHHHHHHHHHH
Confidence 599999998864 5578888876654
No 54
>3c6v_A Probable tautomerase/dehalogenase AU4130; aspergillus fumigatus trimeric thermophilic probable tautomerase/dehalogenase; HET: MSE; 1.90A {Aspergillus fumigatus AF293}
Probab=21.19 E-value=93 Score=21.16 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=23.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhc-----------ccccCCccccc
Q 034559 41 QDRKDEALQVLRSDLMATLNKEVK-----------SLDEDNWMFEG 75 (91)
Q Consensus 41 ~~RKDeam~~LKsdlmaaL~kEVK-----------sLdeD~W~F~~ 75 (91)
+-|-+|.-+.|-..|.+.|...+. .-..++|.|.|
T Consensus 93 ~gRt~eqK~~l~~~l~~~L~~~~gi~~~dv~I~I~E~~~e~Wsf~G 138 (161)
T 3c6v_A 93 TMTSDEQRQGFLKRIDAFLTPMFEPKGIDWEYFVTEAPRDLWKING 138 (161)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEEEECGGGCEETT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCChhhEEEEEEEcCccceEECC
Confidence 557788877888888888876542 23456676654
No 55
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=21.13 E-value=1.7e+02 Score=21.68 Aligned_cols=43 Identities=14% Similarity=0.403 Sum_probs=27.2
Q ss_pred CcchhhhhhHHHHHHHHHH-----HHHHHHHHhcccccCCcccccccc
Q 034559 36 DLISIQDRKDEALQVLRSD-----LMATLNKEVKSLDEDNWMFEGPRS 78 (91)
Q Consensus 36 D~is~~~RKDeam~~LKsd-----lmaaL~kEVKsLdeD~W~F~~prS 78 (91)
|..-...-++.+...|+.. +--.-.++.....+.+|-|.+|..
T Consensus 335 ~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 382 (431)
T 2v6i_A 335 EFKLKTNQRKVFSELIRTGDLPVWLAFQVASANVEYHDRKWCFDGPNE 382 (431)
T ss_dssp TTCCCHHHHHHHHHHHHTTCCCHHHHHHHHHTTCCTTCCGGGTCSCGG
T ss_pred ceehhHhHHHHHHHHhhcCCCchhhhHHHHhccCceeecceeeeCCcc
Confidence 3333344555666666651 223345677788899999998875
No 56
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=20.75 E-value=1.5e+02 Score=19.68 Aligned_cols=42 Identities=5% Similarity=0.052 Sum_probs=25.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcccccCCcccccccceeEeeecC
Q 034559 42 DRKDEALQVLRSDLMATLNKEVKSLDEDNWMFEGPRSHIHLISTA 86 (91)
Q Consensus 42 ~RKDeam~~LKsdlmaaL~kEVKsLdeD~W~F~~prSrI~LiSr~ 86 (91)
.++.+ +..+-.+.|+.|.+... +++.|++..-..-|.+.+++
T Consensus 19 ~~~~~-y~~~a~~~~~~~l~~~~--~~~~W~~~~~~~gv~v~~~~ 60 (231)
T 2r55_A 19 YFQSM-AAQMSEAVAEKMLQYRR--DTAGWKICREGNGVSVSWRP 60 (231)
T ss_dssp -CHHH-HHHHHHHHHHHHHHHHH--CCSSCEEEECCSSEEEEEEE
T ss_pred hhHHH-HHHHHHHHHHHHHHHhc--CCCCCEEEEeCCCEEEEEEc
Confidence 33333 33344445555545443 45789999888888888775
No 57
>2b8n_A Glycerate kinase, putative; TM1585, glycerate kinase (EC 2.7.1.31), structural genomics, center for structural genomics, JCSG; 2.53A {Thermotoga maritima} SCOP: c.118.1.1
Probab=20.66 E-value=66 Score=26.11 Aligned_cols=61 Identities=23% Similarity=0.404 Sum_probs=36.6
Q ss_pred eecCCCCCcccccccCCCCCCcchhhhhhHHHHHHH-HH----HHHHHHHHHhcccccCCc-ccccccceeEee
Q 034559 16 LVGGGSSSNNTATDEFHFPSDLISIQDRKDEALQVL-RS----DLMATLNKEVKSLDEDNW-MFEGPRSHIHLI 83 (91)
Q Consensus 16 v~ggggs~~~~a~ddfhfp~D~is~~~RKDeam~~L-Ks----dlmaaL~kEVKsLdeD~W-~F~~prSrI~Li 83 (91)
+++||||.- |..|.+-|+..| |.+.-+.| ++ .-|..++|.+-.+-.... ....|..-+.||
T Consensus 132 LISGGGSAL------l~~P~~gitL~d-k~~i~~~LL~sGA~I~EiN~VRKhLS~iKGGrLA~~a~pA~vvtLi 198 (429)
T 2b8n_A 132 LLSGGGSSL------FELPLEGVSLEE-IQKLTSALLKSGASIEEINTVRKHLSQVKGGRFAERVFPAKVVALV 198 (429)
T ss_dssp EECTTHHHH------SCCBCTTCCHHH-HHHHHHHHHHTTCCHHHHHHHHHTTBSSTTTHHHHHHTTSEEEEEE
T ss_pred EecCcHHHH------hhcCCCCCCHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhhcccHHHHHhcCCCeEEEEE
Confidence 567776544 566788887665 55555544 44 678889988665544322 234465555554
No 58
>1x3l_A Hypothetical protein PH0495; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 2.10A {Pyrococcus horikoshii}
Probab=20.24 E-value=97 Score=25.13 Aligned_cols=60 Identities=27% Similarity=0.437 Sum_probs=36.4
Q ss_pred eecCCCCCcccccccCCCCCCcchhhhhhHHHHHHH-HH----HHHHHHHHHhcccccCCcc-cccccceeEee
Q 034559 16 LVGGGSSSNNTATDEFHFPSDLISIQDRKDEALQVL-RS----DLMATLNKEVKSLDEDNWM-FEGPRSHIHLI 83 (91)
Q Consensus 16 v~ggggs~~~~a~ddfhfp~D~is~~~RKDeam~~L-Ks----dlmaaL~kEVKsLdeD~W~-F~~prSrI~Li 83 (91)
+++||||.- |..|.+-|+..| |.+.-+.| ++ .-|..++|.+-.+-...-- .. |..-+.||
T Consensus 128 LISGGGSAL------l~~P~~gitL~d-k~~~~~~LL~sGA~I~EiN~VRKhLS~iKGGrLA~~a-pA~vvtLi 193 (440)
T 1x3l_A 128 LISGGGSAL------FELPEEGISLED-LKLTTDLLLKSGAKIHEINTVRKHISKVKGGKLAKMI-KGTGIVLI 193 (440)
T ss_dssp EECTTHHHH------SCCBCTTCCHHH-HHHHHHHHHHTCCCHHHHHHHHHTTBSSTTTHHHHTC-SSEEEEEE
T ss_pred EecCcHHHh------hhcCCCCCCHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhhccchHHHHhC-CCcEEEEE
Confidence 567776544 566788887665 55555555 44 6788899987655444322 23 65555554
No 59
>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*
Probab=20.24 E-value=1.1e+02 Score=22.49 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=16.0
Q ss_pred CCCCcchhhhhhHHHHHHHHH--HHHHHHHHHhccccc
Q 034559 33 FPSDLISIQDRKDEALQVLRS--DLMATLNKEVKSLDE 68 (91)
Q Consensus 33 fp~D~is~~~RKDeam~~LKs--dlmaaL~kEVKsLde 68 (91)
.|+-.+....|....+..|+. +....|+|++|.|.+
T Consensus 332 ~pa~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 369 (374)
T 2iu8_A 332 APARPYQEIHRQVAKVRNLPRLEERIAALEKLVQKLEA 369 (374)
T ss_dssp TTEEEHHHHHHHHHHHHTHHHHHHHHHHHHHCCCC---
T ss_pred CCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 456555444444333344432 334556666666543
No 60
>1uvq_C Orexin; immunology, MHC class II, diabetes, narcolepsy, autoimmune disease, structural proteomics in europe, spine, structural genomics; HET: NAG FUC BMA; 1.8A {Homo sapiens}
Probab=20.08 E-value=41 Score=19.08 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=10.4
Q ss_pred CCCcceeccceecCC
Q 034559 6 PANSSISTTPLVGGG 20 (91)
Q Consensus 6 PA~S~vSttav~ggg 20 (91)
|..+-||=++|.|||
T Consensus 8 ~pSTKVsWAaVtggg 22 (33)
T 1uvq_C 8 LPSTKVSWAAVGGGG 22 (33)
T ss_pred CCccccceEEecCCc
Confidence 445668888877766
No 61
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=20.05 E-value=56 Score=21.29 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHh-----------cccccCCcccccccce
Q 034559 42 DRKDEALQVLRSDLMATLNKEV-----------KSLDEDNWMFEGPRSH 79 (91)
Q Consensus 42 ~RKDeam~~LKsdlmaaL~kEV-----------KsLdeD~W~F~~prSr 79 (91)
-|-+|.-+.|=.+|.++| +.. ...+.+||.|.|-+.+
T Consensus 75 gRt~EqK~~L~~~it~~l-~~lg~~~~~v~V~i~E~~~~~W~~ggG~aq 122 (136)
T 3mlc_A 75 GRTIETKQRVFAAITESL-APIGVAGSDVFIAITENAPHDWSFGFGSAQ 122 (136)
T ss_dssp TCCHHHHHHHHHHHHHHH-TTTTCCGGGEEEEEEEECGGGEECBTTBCH
T ss_pred CCCHHHHHHHHHHHHHHH-HHcCCCcccEEEEEEEcCHHHeeecCcEee
Confidence 577777777777777777 443 2345678888876543
No 62
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=20.04 E-value=96 Score=18.76 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=17.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhc
Q 034559 41 QDRKDEALQVLRSDLMATLNKEVK 64 (91)
Q Consensus 41 ~~RKDeam~~LKsdlmaaL~kEVK 64 (91)
.-|-.|.-..|=..|.+.|.++..
T Consensus 66 ~g~~~eqk~~l~~~i~~~l~~~lg 89 (115)
T 1uiz_A 66 GKIGGPQNKSYTKLLCDILTKQLN 89 (115)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhC
Confidence 347777777888888888887653
Done!