Query 034559
Match_columns 91
No_of_seqs 17 out of 19
Neff 2.0
Searched_HMMs 13730
Date Mon Mar 25 06:13:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034559.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034559hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ev0a_ d.71.1.1 (A:) Cell div 51.6 5.6 0.00041 23.3 2.7 23 48-71 9-31 (58)
2 d3dwya1 a.29.2.1 (A:1084-1197) 45.8 9.6 0.0007 22.7 3.2 27 50-77 6-32 (114)
3 d2ux0a1 d.17.4.7 (A:387-521) A 44.5 7.3 0.00053 21.4 2.3 28 44-71 2-29 (135)
4 d1otfa_ d.80.1.1 (A:) 4-oxaloc 39.9 13 0.00093 19.8 2.9 33 43-75 11-54 (59)
5 d1ryph_ d.153.1.4 (H:) Proteas 38.3 10 0.00073 24.1 2.6 54 6-65 124-178 (205)
6 d1s0ya_ d.80.1.1 (A:) Trans-3- 37.7 17 0.0013 19.5 3.2 33 43-75 11-54 (62)
7 d1v97a4 d.87.2.1 (A:415-528) X 37.3 19 0.0014 21.5 3.6 34 28-61 77-112 (114)
8 d1pb6a1 a.4.1.9 (A:14-85) Hypo 36.4 15 0.0011 19.8 2.8 25 44-68 48-72 (72)
9 d1f0ya2 c.2.1.6 (A:12-203) Sho 36.2 3.7 0.00027 26.4 0.1 48 13-63 6-55 (192)
10 d1mwwa_ d.80.1.4 (A:) Hypothet 34.3 16 0.0011 21.6 2.9 35 41-75 68-113 (120)
11 d1whua_ a.4.9.1 (A:) Polynucle 33.5 9.6 0.0007 23.0 1.8 20 43-62 43-62 (104)
12 d1mo6a2 d.48.1.1 (A:270-329) R 31.3 22 0.0016 20.2 3.0 24 42-65 32-57 (60)
13 d1wu3i_ a.26.1.3 (I:) Interfer 31.1 9.2 0.00067 25.4 1.5 24 29-53 34-57 (161)
14 d1u94a2 d.48.1.1 (A:269-328) R 30.9 24 0.0018 20.0 3.2 23 43-65 33-57 (60)
15 d1em2a_ d.129.3.2 (A:) Lipid t 30.8 24 0.0018 21.4 3.4 20 54-75 15-34 (214)
16 d1wdka3 c.2.1.6 (A:311-496) Fa 29.4 3.8 0.00028 26.0 -0.7 51 11-66 4-58 (186)
17 d1r3na2 d.58.19.1 (A:248-363) 28.9 20 0.0014 20.5 2.6 55 16-74 54-108 (116)
18 d1v2ya_ d.15.1.1 (A:) Ubiquiti 27.9 20 0.0015 21.2 2.5 44 43-86 25-96 (105)
19 d1rh2a_ a.26.1.3 (A:) Interfer 27.6 10 0.00076 24.7 1.2 25 28-52 28-52 (154)
20 d1ebda2 c.3.1.5 (A:155-271) Di 24.5 0.51 3.7E-05 27.7 -5.4 8 13-20 24-31 (117)
21 d1feca2 c.3.1.5 (A:170-286) Tr 23.4 0.57 4.1E-05 27.5 -5.3 8 13-20 20-27 (117)
22 d1tubb1 c.32.1.1 (B:1-245) Tub 23.3 25 0.0018 23.9 2.6 19 49-67 110-128 (243)
23 d1ewfa1 d.83.1.1 (A:1-217) Bac 23.0 37 0.0027 21.6 3.3 24 45-68 11-34 (217)
24 d1t56a1 a.4.1.9 (A:22-94) Ethr 22.8 31 0.0022 18.1 2.5 25 44-68 47-71 (73)
25 d2aala1 d.80.1.6 (A:1-129) Mal 22.3 36 0.0026 20.6 3.1 36 40-75 72-118 (129)
26 d1v7ba1 a.4.1.9 (A:1-74) Trans 22.2 46 0.0033 17.5 3.2 26 44-69 48-73 (74)
27 d1jssa_ d.129.3.2 (A:) Cholest 21.8 26 0.0019 21.1 2.3 23 64-86 15-37 (199)
28 d1p5dx3 c.84.1.1 (X:259-367) P 21.3 19 0.0014 21.2 1.4 42 15-67 62-103 (109)
29 d2psoa1 d.129.3.2 (A:908-1104) 20.9 21 0.0015 21.9 1.7 31 54-85 5-35 (197)
30 d1rm6b1 d.87.2.1 (B:217-323) 4 20.6 62 0.0045 18.7 3.8 22 39-60 85-106 (107)
31 d1xp8a2 d.48.1.1 (A:283-341) R 20.3 28 0.002 19.7 2.0 23 43-65 32-56 (59)
No 1
>d1ev0a_ d.71.1.1 (A:) Cell division protein MinE topological specificity domain {Escherichia coli [TaxId: 562]}
Probab=51.61 E-value=5.6 Score=23.27 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHhcccccCCc
Q 034559 48 LQVLRSDLMATLNKEVKSLDEDNW 71 (91)
Q Consensus 48 m~~LKsdlmaaL~kEVKsLdeD~W 71 (91)
+-.||.||++.+.|=|+ +|.|.-
T Consensus 9 Lp~Lq~eil~VI~KyV~-Id~d~v 31 (58)
T d1ev0a_ 9 LPQLRKDILEVICKYVQ-IDPEMV 31 (58)
T ss_dssp HHHHHHHHHHHHHHHSC-CCGGGE
T ss_pred HHHHHHHHHHHHHHhEe-ecHHHe
Confidence 56899999999999998 665543
No 2
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.78 E-value=9.6 Score=22.71 Aligned_cols=27 Identities=33% Similarity=0.456 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhcccccCCccccccc
Q 034559 50 VLRSDLMATLNKEVKSLDEDNWMFEGPR 77 (91)
Q Consensus 50 ~LKsdlmaaL~kEVKsLdeD~W~F~~pr 77 (91)
+|+..+|..|++ ++.-|..+|-|.-|-
T Consensus 6 el~~~l~~~l~~-l~~~~p~a~pF~~pv 32 (114)
T d3dwya1 6 ELRQALMPTLEA-LYRQDPESLPFRQPV 32 (114)
T ss_dssp HHHHHHHHHHHH-HHTCTTTTGGGSSCC
T ss_pred HHHHHHHHHHHH-HHhcCcCCCccCCCC
Confidence 577777777764 455688999999884
No 3
>d2ux0a1 d.17.4.7 (A:387-521) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.51 E-value=7.3 Score=21.36 Aligned_cols=28 Identities=14% Similarity=0.493 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccccCCc
Q 034559 44 KDEALQVLRSDLMATLNKEVKSLDEDNW 71 (91)
Q Consensus 44 KDeam~~LKsdlmaaL~kEVKsLdeD~W 71 (91)
+|+.+...|.+|++.+++-.+++...+|
T Consensus 2 ~~~d~~~~~~eI~~l~~~~~~A~~~~D~ 29 (135)
T d2ux0a1 2 EDEDLKVRKQEIIKITEQLIEAINNGDF 29 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHcCCH
Confidence 4566777788888877777777665554
No 4
>d1otfa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase {Pseudomonas sp., DmpI [TaxId: 306]}
Probab=39.93 E-value=13 Score=19.84 Aligned_cols=33 Identities=15% Similarity=0.368 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHH-----------hcccccCCccccc
Q 034559 43 RKDEALQVLRSDLMATLNKE-----------VKSLDEDNWMFEG 75 (91)
Q Consensus 43 RKDeam~~LKsdlmaaL~kE-----------VKsLdeD~W~F~~ 75 (91)
|=+|.-+.|=.++-++|.+. +...+.+||.|.|
T Consensus 11 rs~eqK~~l~~~it~~~~~~~g~~~~~v~V~i~E~~~~nw~~gG 54 (59)
T d1otfa_ 11 RTDEQKETLIRQVSEAMANSLDAPLERVRVLITEMPKNHFGIGG 54 (59)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEECGGGEEETT
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeChhhEEECC
Confidence 33444444555555555443 3456788898876
No 5
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=38.28 E-value=10 Score=24.06 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=29.4
Q ss_pred CCCcceeccceecCCCCCcc-cccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHhcc
Q 034559 6 PANSSISTTPLVGGGSSSNN-TATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVKS 65 (91)
Q Consensus 6 PA~S~vSttav~ggggs~~~-~a~ddfhfp~D~is~~~RKDeam~~LKsdlmaaL~kEVKs 65 (91)
|.-+....-.++-|.|+..+ ..+|. +|..|+ + .+||+...+.=|..++++.+-+
T Consensus 124 ~~G~~~~~~~~a~G~g~~~~~~~Le~-~~~~~m-s----~~ea~~l~~~al~~a~~rD~~s 178 (205)
T d1ryph_ 124 LGGSVHKLPYAIAGSGSTFIYGYCDK-NFRENM-S----KEETVDFIKHSLSQAIKWDGSS 178 (205)
T ss_dssp TTSCCEEESEEEESGGGGGGHHHHHH-HCCTTC-C----HHHHHHHHHHHHHHHHHHBTTC
T ss_pred CCCcEEecCeEEeecCcHHHHHHHHh-hhhccc-C----HHHHHHHHHHHHHHHHHhcCcC
Confidence 33344444454444444443 33443 344443 2 3788888877777787775544
No 6
>d1s0ya_ d.80.1.1 (A:) Trans-3-chloroacrylic acid dehalogenase alpha-subunit, CaaD1 {Pseudomonas pavonaceae [TaxId: 47881]}
Probab=37.68 E-value=17 Score=19.52 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHh-----------cccccCCccccc
Q 034559 43 RKDEALQVLRSDLMATLNKEV-----------KSLDEDNWMFEG 75 (91)
Q Consensus 43 RKDeam~~LKsdlmaaL~kEV-----------KsLdeD~W~F~~ 75 (91)
|=+|.-..|=.+|.+++.+-. ...+.+||.+.|
T Consensus 11 rt~eqK~~l~~~it~~~~~~~g~~~e~v~V~i~E~~~~nw~~gG 54 (62)
T d1s0ya_ 11 RTDEQKRALSAGLLRVISEATGEPRENIFFVIREGSGINFVEHG 54 (62)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGEEETT
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeChHHeEECC
Confidence 455666666677777776654 346778888866
No 7
>d1v97a4 d.87.2.1 (A:415-528) Xanthine oxidase, domain 4 (?) {Cow (Bos taurus) [TaxId: 9913]}
Probab=37.34 E-value=19 Score=21.53 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=26.2
Q ss_pred cccCCCCCCcc--hhhhhhHHHHHHHHHHHHHHHHH
Q 034559 28 TDEFHFPSDLI--SIQDRKDEALQVLRSDLMATLNK 61 (91)
Q Consensus 28 ~ddfhfp~D~i--s~~~RKDeam~~LKsdlmaaL~k 61 (91)
.+++..+.|.- +..|||.=|...|+.=+.+.|++
T Consensus 77 ~~~i~p~~d~~g~saeYRk~l~~~ll~k~~~~v~~~ 112 (114)
T d1v97a4 77 AEELSLSPDAPGGMIEFRRTLTLSFFFKFYLTVLKK 112 (114)
T ss_dssp HHHTCCCTTCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888874 68899999988888866666643
No 8
>d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=36.37 E-value=15 Score=19.84 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccc
Q 034559 44 KDEALQVLRSDLMATLNKEVKSLDE 68 (91)
Q Consensus 44 KDeam~~LKsdlmaaL~kEVKsLde 68 (91)
||+.+..+-...++.+..++++++|
T Consensus 48 K~~l~~~~~~~~~~~~~~~l~a~~E 72 (72)
T d1pb6a1 48 KEALYIAVLRQILDIWLAPLKAFRE 72 (72)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888888888888888888765
No 9
>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.21 E-value=3.7 Score=26.40 Aligned_cols=48 Identities=15% Similarity=0.306 Sum_probs=23.7
Q ss_pred ccceecCC--CCCcccccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 034559 13 TTPLVGGG--SSSNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEV 63 (91)
Q Consensus 13 ttav~ggg--gs~~~~a~ddfhfp~D~is~~~RKDeam~~LKsdlmaaL~kEV 63 (91)
.-+|+|+| |+.-+..+-..-+ ..-..||-++++...+..+...|++-+
T Consensus 6 kvaViGaG~mG~~iA~~~a~~G~---~V~l~D~~~~~l~~a~~~i~~~l~~~~ 55 (192)
T d1f0ya2 6 HVTVIGGGLMGAGIAQVAAATGH---TVVLVDQTEDILAKSKKGIEESLRKVA 55 (192)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHhCCC---cEEEEECChHHHHHHHhhHHHHHHHHH
Confidence 45799998 4222211111111 123445666666666666655555544
No 10
>d1mwwa_ d.80.1.4 (A:) Hypothetical protein HI1388.1 {Haemophilus influenzae [TaxId: 727]}
Probab=34.25 E-value=16 Score=21.57 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=26.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHh-----------cccccCCccccc
Q 034559 41 QDRKDEALQVLRSDLMATLNKEV-----------KSLDEDNWMFEG 75 (91)
Q Consensus 41 ~~RKDeam~~LKsdlmaaL~kEV-----------KsLdeD~W~F~~ 75 (91)
.-|-+|.-..|=..|.++|.+.. ...+.+||.|.|
T Consensus 68 ~grs~eqK~~l~~~lt~~l~~~lgi~~~~v~I~i~e~~~~~W~~~G 113 (120)
T d1mwwa_ 68 AGRMEGTKKRLIKMLFSELEYKLGIRAHDVEITIKEQPAHCWGFRG 113 (120)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEECGGGEEETT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEECCHHHeEECC
Confidence 34778888888888888888764 455667888866
No 11
>d1whua_ a.4.9.1 (A:) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.52 E-value=9.6 Score=23.04 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 034559 43 RKDEALQVLRSDLMATLNKE 62 (91)
Q Consensus 43 RKDeam~~LKsdlmaaL~kE 62 (91)
-+++|+..||.++++.|..+
T Consensus 43 eR~~al~~ik~ei~~~l~e~ 62 (104)
T d1whua_ 43 SRDEAVNKIRLDTEEHLKEK 62 (104)
T ss_dssp HHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 35788999999999988644
No 12
>d1mo6a2 d.48.1.1 (A:270-329) RecA protein, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=31.27 E-value=22 Score=20.17 Aligned_cols=24 Identities=25% Similarity=0.417 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHH--HHHHHHHHHhcc
Q 034559 42 DRKDEALQVLRS--DLMATLNKEVKS 65 (91)
Q Consensus 42 ~RKDeam~~LKs--dlmaaL~kEVKs 65 (91)
.=||-|..-|+. +|++.|.++|+.
T Consensus 32 QGre~a~~~L~enpel~~eie~~ir~ 57 (60)
T d1mo6a2 32 QGKENARNFLVENADVADEIEKKIKE 57 (60)
T ss_dssp ESHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 346788888886 899999998874
No 13
>d1wu3i_ a.26.1.3 (I:) Interferon-beta {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.07 E-value=9.2 Score=25.41 Aligned_cols=24 Identities=13% Similarity=0.345 Sum_probs=19.5
Q ss_pred ccCCCCCCcchhhhhhHHHHHHHHH
Q 034559 29 DEFHFPSDLISIQDRKDEALQVLRS 53 (91)
Q Consensus 29 ddfhfp~D~is~~~RKDeam~~LKs 53 (91)
.||.||-+... |.-|++|..++-.
T Consensus 34 ~dF~fP~e~~~-q~Qk~~a~~v~~e 57 (161)
T d1wu3i_ 34 ADFKIPMEMTE-KMQKSYTAFAIQE 57 (161)
T ss_dssp CCCCCCGGGGS-CCCHHHHHHHHHH
T ss_pred CCCCCcHHHHh-hccHHHHHHHHHH
Confidence 79999999876 7779988876644
No 14
>d1u94a2 d.48.1.1 (A:269-328) RecA protein, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=30.92 E-value=24 Score=19.98 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=18.4
Q ss_pred hhHHHHHHHHH--HHHHHHHHHhcc
Q 034559 43 RKDEALQVLRS--DLMATLNKEVKS 65 (91)
Q Consensus 43 RKDeam~~LKs--dlmaaL~kEVKs 65 (91)
=||-|..-|+. ++++.|.++||.
T Consensus 33 Gre~~~~~L~enpel~~eie~~ire 57 (60)
T d1u94a2 33 GKANATAWLKDNPETAKEIEKKVRE 57 (60)
T ss_dssp SHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 46778888886 899999988874
No 15
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.85 E-value=24 Score=21.42 Aligned_cols=20 Identities=30% Similarity=0.680 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcccccCCccccc
Q 034559 54 DLMATLNKEVKSLDEDNWMFEG 75 (91)
Q Consensus 54 dlmaaL~kEVKsLdeD~W~F~~ 75 (91)
|.++.+.+-+. ++++|+++.
T Consensus 15 e~~~~~~~il~--~~~~W~~~~ 34 (214)
T d1em2a_ 15 EATAVVDQILA--QEENWKFEK 34 (214)
T ss_dssp HHHHHHHHHHT--TGGGCEEEE
T ss_pred HHHHHHHHHhh--CCCCCeEEE
Confidence 55554444432 567899864
No 16
>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}
Probab=29.38 E-value=3.8 Score=26.04 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=31.6
Q ss_pred eeccceecCC--C-CCcc-cccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHhccc
Q 034559 11 ISTTPLVGGG--S-SSNN-TATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSL 66 (91)
Q Consensus 11 vSttav~ggg--g-s~~~-~a~ddfhfp~D~is~~~RKDeam~~LKsdlmaaL~kEVKsL 66 (91)
|..-+|+|+| | +.+. .+.-.+ ..-..||-+|++...+..+...|++.++..
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~G~-----~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~ 58 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASKGT-----PILMKDINEHGIEQGLAEAAKLLVGRVDKG 58 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTC-----CEEEECSSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC-----eEEEEECCHHHHhhhhhhhhhhHHhhhccc
Confidence 5567899998 4 3322 111222 124566777888887778888887776643
No 17
>d1r3na2 d.58.19.1 (A:248-363) Peptidase-like beta-alanine synthase {Yeast (Saccharomyces kluyveri) [TaxId: 4934]}
Probab=28.94 E-value=20 Score=20.48 Aligned_cols=55 Identities=18% Similarity=0.277 Sum_probs=30.1
Q ss_pred eecCCCCCcccccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHhcccccCCcccc
Q 034559 16 LVGGGSSSNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSLDEDNWMFE 74 (91)
Q Consensus 16 v~ggggs~~~~a~ddfhfp~D~is~~~RKDeam~~LKsdlmaaL~kEVKsLdeD~W~F~ 74 (91)
+.+||++ .|+.-+...|= +++-..-+|.+..+..+|.+.+++..+.-++..-.|+
T Consensus 54 ~~~g~~~-~NvIP~~a~~~---~d~R~~~~~~~~~i~~~i~~~~~~~a~~~~~~~v~~e 108 (116)
T d1r3na2 54 IDAKPYS-VNIIPGEVSFT---LDFRHPSDDVLATMLKEAAAEFDRLIKINDGGALSYE 108 (116)
T ss_dssp EEEESCC-TTEECSEEEEE---EEEEESCHHHHHHHHHHHHHHHHHHTTCCTTCCCEEE
T ss_pred EEecCcc-cceeCCEEEEE---EEEecCCHHHHHHHHHHHHHHHHHHHHHcCCccEEEE
Confidence 3344433 44445555442 2333445677777888887777766654444444443
No 18
>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.88 E-value=20 Score=21.22 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhc------------------------ccccCCcccc----cccceeEeeecC
Q 034559 43 RKDEALQVLRSDLMATLNKEVK------------------------SLDEDNWMFE----GPRSHIHLISTA 86 (91)
Q Consensus 43 RKDeam~~LKsdlmaaL~kEVK------------------------sLdeD~W~F~----~prSrI~LiSr~ 86 (91)
..+.....||..|.+.+.=.++ -|.+|+|... .+.+.||||-|+
T Consensus 25 ~~~~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~tL~~~gI~~g~~l~lv~r~ 96 (105)
T d1v2ya_ 25 VQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKL 96 (105)
T ss_dssp CTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSSEEEEEEECS
T ss_pred CCCChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEECCEECcccCCCHHHcCCCCCCEEEEEEec
Confidence 4566788889888777665554 3888888654 378999998775
No 19
>d1rh2a_ a.26.1.3 (A:) Interferon-alpha 2b {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.64 E-value=10 Score=24.73 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=20.1
Q ss_pred cccCCCCCCcchhhhhhHHHHHHHH
Q 034559 28 TDEFHFPSDLISIQDRKDEALQVLR 52 (91)
Q Consensus 28 ~ddfhfp~D~is~~~RKDeam~~LK 52 (91)
.-||.||-+...-|..|++|..++-
T Consensus 28 r~dF~fP~e~~~~q~qk~~~~~~~~ 52 (154)
T d1rh2a_ 28 RHDFGFPQEEFGNQFQKAETIPVLH 52 (154)
T ss_pred CCCCCChhhhccccccHHHHHHHHH
Confidence 4699999988777888999887653
No 20
>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=24.54 E-value=0.51 Score=27.72 Aligned_cols=8 Identities=38% Similarity=0.962 Sum_probs=6.2
Q ss_pred ccceecCC
Q 034559 13 TTPLVGGG 20 (91)
Q Consensus 13 ttav~ggg 20 (91)
..+|+|||
T Consensus 24 ~v~IiGgG 31 (117)
T d1ebda2 24 SLVVIGGG 31 (117)
T ss_dssp EEEEECCS
T ss_pred eEEEECCC
Confidence 46788888
No 21
>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}
Probab=23.37 E-value=0.57 Score=27.52 Aligned_cols=8 Identities=50% Similarity=0.825 Sum_probs=6.1
Q ss_pred ccceecCC
Q 034559 13 TTPLVGGG 20 (91)
Q Consensus 13 ttav~ggg 20 (91)
..+|+|||
T Consensus 20 ~v~IiGgG 27 (117)
T d1feca2 20 RALCVGGG 27 (117)
T ss_dssp EEEEECSS
T ss_pred eEEEECCC
Confidence 46788888
No 22
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=23.31 E-value=25 Score=23.90 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhcccc
Q 034559 49 QVLRSDLMATLNKEVKSLD 67 (91)
Q Consensus 49 ~~LKsdlmaaL~kEVKsLd 67 (91)
.+++.++|+.++|||..-|
T Consensus 110 ~~~~d~i~d~iRk~~E~cD 128 (243)
T d1tubb1 110 AELVDSVLDVVRKESESCD 128 (243)
T ss_dssp HHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 4678899999999999887
No 23
>d1ewfa1 d.83.1.1 (A:1-217) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.98 E-value=37 Score=21.56 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccccc
Q 034559 45 DEALQVLRSDLMATLNKEVKSLDE 68 (91)
Q Consensus 45 Deam~~LKsdlmaaL~kEVKsLde 68 (91)
+.+++.+|...++.|++|++.+-=
T Consensus 11 ~kgL~y~~~~~~~~l~~~l~~i~i 34 (217)
T d1ewfa1 11 QKGLDYASQQGTAALQKELKRIKI 34 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCC
Confidence 468899999999999999988763
No 24
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=22.79 E-value=31 Score=18.10 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccc
Q 034559 44 KDEALQVLRSDLMATLNKEVKSLDE 68 (91)
Q Consensus 44 KDeam~~LKsdlmaaL~kEVKsLde 68 (91)
|++-+..+-...++.+..+++.+-+
T Consensus 47 K~~L~~~~~~~~~~~~~~~~~~~~~ 71 (73)
T d1t56a1 47 KEAVLLTLLDRVVNQADMALQTLAE 71 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7888888888888888887776544
No 25
>d2aala1 d.80.1.6 (A:1-129) Malonate semialdehyde decarboxylase, MSAD {Pseudomonas pavonaceae [TaxId: 47881]}
Probab=22.35 E-value=36 Score=20.63 Aligned_cols=36 Identities=17% Similarity=0.340 Sum_probs=28.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhc-----------ccccCCccccc
Q 034559 40 IQDRKDEALQVLRSDLMATLNKEVK-----------SLDEDNWMFEG 75 (91)
Q Consensus 40 ~~~RKDeam~~LKsdlmaaL~kEVK-----------sLdeD~W~F~~ 75 (91)
+.-|-.|.-+.|=..|+++|.+... ..+.+||-|.+
T Consensus 72 ~~GRs~eqK~~l~~~l~~~l~~~~gi~~e~v~V~i~E~~~~~Ws~G~ 118 (129)
T d2aala1 72 SRPRSEEQKVCFYKLLTGALERDCGISPDDVIVALVENSDADWSFGR 118 (129)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGGGEECBT
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHhCcCcCcEEEEEEECCHHHCcccC
Confidence 3578999999999999999988754 45677888864
No 26
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=22.24 E-value=46 Score=17.51 Aligned_cols=26 Identities=19% Similarity=0.320 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccccC
Q 034559 44 KDEALQVLRSDLMATLNKEVKSLDED 69 (91)
Q Consensus 44 KDeam~~LKsdlmaaL~kEVKsLdeD 69 (91)
|++-+..+=.++.+.+.+++..+..|
T Consensus 48 K~~L~~~~~~~~~~~~~~~l~~~~~d 73 (74)
T d1v7ba1 48 RHALLLGMHELLADDWDKELRDITRD 73 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 78888888888888888888776654
No 27
>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.75 E-value=26 Score=21.08 Aligned_cols=23 Identities=17% Similarity=0.455 Sum_probs=20.2
Q ss_pred cccccCCcccccccceeEeeecC
Q 034559 64 KSLDEDNWMFEGPRSHIHLISTA 86 (91)
Q Consensus 64 KsLdeD~W~F~~prSrI~LiSr~ 86 (91)
.++++++|++..-...|-+-+|+
T Consensus 15 ~~~~~~~W~~~~~~~~v~v~~~~ 37 (199)
T d1jssa_ 15 HSIEEDEWRVAKKAKDVTVWRKP 37 (199)
T ss_dssp TTSCGGGCEEEEEETTEEEEEEE
T ss_pred cCcCcCCCeEEEecCCEEEEEEE
Confidence 56899999999999989888885
No 28
>d1p5dx3 c.84.1.1 (X:259-367) Phosphomannomutase/phosphoglucomutase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.34 E-value=19 Score=21.23 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=20.8
Q ss_pred ceecCCCCCcccccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHhcccc
Q 034559 15 PLVGGGSSSNNTATDEFHFPSDLISIQDRKDEALQVLRSDLMATLNKEVKSLD 67 (91)
Q Consensus 15 av~ggggs~~~~a~ddfhfp~D~is~~~RKDeam~~LKsdlmaaL~kEVKsLd 67 (91)
++.||-.| .-..+.|.|++.| |..+..|+ +++.|.++=|+|.
T Consensus 62 a~~GGE~S-Gh~~~~~~~~~~~--------Dgi~~al~--~le~l~~~~~~ls 103 (109)
T d1p5dx3 62 ALLAGEMS-GHVFFKERWFGFD--------DGIYSAAR--LLEILSQDQRDSE 103 (109)
T ss_dssp CSEEECTT-SBEEETTTTCSSB--------CHHHHHHH--HHHHHHTCSSCHH
T ss_pred CcEEeccc-ceEEeccCCCCCC--------hHHHHHHH--HHHHHHHcCCCHH
Confidence 45565533 3345666777643 33333333 4455555555554
No 29
>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.93 E-value=21 Score=21.93 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcccccCCcccccccceeEeeec
Q 034559 54 DLMATLNKEVKSLDEDNWMFEGPRSHIHLIST 85 (91)
Q Consensus 54 dlmaaL~kEVKsLdeD~W~F~~prSrI~LiSr 85 (91)
+++..|.||++. ..+.|+...-...|.+..|
T Consensus 5 ~~~~~l~~e~~~-~~~GW~~~~~~~gi~V~~k 35 (197)
T d2psoa1 5 HLIQGLQKEAKE-KFKGWVTCSSTDNTDLAFK 35 (197)
T ss_dssp CHHHHHHHHHHH-HCCSCEEECCSSSCEEEEE
T ss_pred HHHHHHHHHhhc-cCCCceEEecCCCeEEEEE
Confidence 467788888775 4457999988888887554
No 30
>d1rm6b1 d.87.2.1 (B:217-323) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, C-terminal domain {Thauera aromatica [TaxId: 59405]}
Probab=20.64 E-value=62 Score=18.72 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=16.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q 034559 39 SIQDRKDEALQVLRSDLMATLN 60 (91)
Q Consensus 39 s~~~RKDeam~~LKsdlmaaL~ 60 (91)
+..|||.-+-..+|.-|.+.++
T Consensus 85 sa~YR~~l~~~L~~Ral~~~~e 106 (107)
T d1rm6b1 85 GVKYRRRVLLAISRKVVDQLWE 106 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHh
Confidence 6788888887777776666554
No 31
>d1xp8a2 d.48.1.1 (A:283-341) RecA protein, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=20.30 E-value=28 Score=19.69 Aligned_cols=23 Identities=9% Similarity=0.304 Sum_probs=16.2
Q ss_pred hhHHHHHHHHH--HHHHHHHHHhcc
Q 034559 43 RKDEALQVLRS--DLMATLNKEVKS 65 (91)
Q Consensus 43 RKDeam~~LKs--dlmaaL~kEVKs 65 (91)
=|+-|.+-|+. ++++.|+++|+.
T Consensus 32 Gre~a~~~L~enpel~~eie~~i~~ 56 (59)
T d1xp8a2 32 GKEKTIAYIAERPEMEQEIRDRVMA 56 (59)
T ss_dssp SHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 46677777765 777777777764
Done!