BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034563
(91 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359386154|gb|AEV43366.1| group B HMG-box protein [Citrus sinensis]
Length = 165
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/87 (100%), Positives = 87/87 (100%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP
Sbjct: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAV 87
SAFFVFLEEFRKVYKQEHPNVKAVSAV
Sbjct: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAV 87
>gi|224112525|ref|XP_002316220.1| high mobility group family [Populus trichocarpa]
gi|222865260|gb|EEF02391.1| high mobility group family [Populus trichocarpa]
Length = 176
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/88 (73%), Positives = 71/88 (80%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK+ +GKG + +K EV+ PVEDR GKRKA LKA+ SS KR K K KKDPNKPKRPP
Sbjct: 1 MKIAKGKGTARTEKKEVLLPVEDRKIGKRKAALKANESSKKRVKKEKITKKDPNKPKRPP 60
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
SAFFVFLEEFRKVYKQEHPNVKAVSAV
Sbjct: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVG 88
>gi|225448398|ref|XP_002269398.1| PREDICTED: high mobility group B protein 1 isoform 1 [Vitis
vinifera]
gi|147854340|emb|CAN83423.1| hypothetical protein VITISV_023376 [Vitis vinifera]
Length = 166
Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/87 (78%), Positives = 73/87 (83%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MKVT+GK A +KDK E +KPVEDR GKRKA LKA +S+ K K K AKKDPNKPKRPP
Sbjct: 1 MKVTKGKAAARKDKKEALKPVEDRRLGKRKAALKADKSTKKLAKKEKLAKKDPNKPKRPP 60
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAV 87
SAFFVFLEEFRKVYKQEHPNVKAVSAV
Sbjct: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAV 87
>gi|225448400|ref|XP_002270185.1| PREDICTED: high mobility group B protein 1 isoform 2 [Vitis
vinifera]
Length = 156
Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 73/88 (82%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MKVT+GK A +KDK E +KPVEDR GKRKA LKA +S+ K K K AKKDPNKPKRPP
Sbjct: 1 MKVTKGKAAARKDKKEALKPVEDRRLGKRKAALKADKSTKKLAKKEKLAKKDPNKPKRPP 60
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
SAFFVFLEEFRKVYKQEHPNVKAVSAV
Sbjct: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVG 88
>gi|118484946|gb|ABK94338.1| unknown [Populus trichocarpa]
Length = 171
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 69/87 (79%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK +GKGA + +K EV PVEDR GKRKA LKA+ SS KR K KKDP+KPKRPP
Sbjct: 1 MKTAKGKGAARTEKKEVSLPVEDRKIGKRKAALKATESSKKRAAKEKITKKDPDKPKRPP 60
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAV 87
S+FFVFLEEFRK+YKQEHPN+KAVSAV
Sbjct: 61 SSFFVFLEEFRKIYKQEHPNMKAVSAV 87
>gi|224098541|ref|XP_002311212.1| high mobility group family [Populus trichocarpa]
gi|222851032|gb|EEE88579.1| high mobility group family [Populus trichocarpa]
Length = 179
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 69/87 (79%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK +GKGA + +K EV PVEDR GKRKA LKA+ SS KR K KKDP+KPKRPP
Sbjct: 1 MKTAKGKGAARTEKKEVSLPVEDRKIGKRKAALKATESSKKRAAKEKITKKDPDKPKRPP 60
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAV 87
S+FFVFLEEFRK+YKQEHPN+KAVSAV
Sbjct: 61 SSFFVFLEEFRKIYKQEHPNMKAVSAV 87
>gi|297736623|emb|CBI25494.3| unnamed protein product [Vitis vinifera]
Length = 128
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 73/88 (82%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MKVT+GK A +KDK E +KPVEDR GKRKA LKA +S+ K K K AKKDPNKPKRPP
Sbjct: 25 MKVTKGKAAARKDKKEALKPVEDRRLGKRKAALKADKSTKKLAKKEKLAKKDPNKPKRPP 84
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
SAFFVFLEEFRKVYKQEHPNVKAVSAV
Sbjct: 85 SAFFVFLEEFRKVYKQEHPNVKAVSAVG 112
>gi|359486418|ref|XP_003633441.1| PREDICTED: high mobility group B protein 1 [Vitis vinifera]
Length = 151
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 72/86 (83%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MKVT+GK A +KDK E +KPVEDR GKRKA LKA +S+ K K K AKKDPNKPKRPP
Sbjct: 1 MKVTKGKAAARKDKKEALKPVEDRRLGKRKAALKADKSTKKLAKKEKLAKKDPNKPKRPP 60
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSA 86
SAFFVFLEEFRKVYKQEHPNVKAVSA
Sbjct: 61 SAFFVFLEEFRKVYKQEHPNVKAVSA 86
>gi|255571919|ref|XP_002526902.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223533801|gb|EEF35533.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 190
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 72/88 (81%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MKV +GK KKD+ EV+KPVEDR GKR A LK +++S K TK K AKKDPN+PKRPP
Sbjct: 1 MKVGKGKETAKKDRKEVLKPVEDRKLGKRSAALKPNKNSKKVTKKDKPAKKDPNRPKRPP 60
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
SAFFVFLE+FRKVYKQEHPNVKAVSAV
Sbjct: 61 SAFFVFLEDFRKVYKQEHPNVKAVSAVG 88
>gi|449461783|ref|XP_004148621.1| PREDICTED: high mobility group B protein 1-like [Cucumis sativus]
Length = 169
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 68/88 (77%), Gaps = 1/88 (1%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK ++GKG + K E +KPV+DR GKRKAV+KA + + TK AKKDPNKPKRPP
Sbjct: 1 MKGSKGKGTSRVSK-EALKPVDDRKVGKRKAVVKADKGIKRPTKKDLKAKKDPNKPKRPP 59
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
SAFFVFLEEFRK YK+E+PNVKAVSAV
Sbjct: 60 SAFFVFLEEFRKEYKRENPNVKAVSAVG 87
>gi|449521910|ref|XP_004167972.1| PREDICTED: high mobility group B protein 1-like [Cucumis sativus]
Length = 112
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 68/88 (77%), Gaps = 1/88 (1%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK ++GKG + K E +KPV+DR GKRKAV+KA + + TK AKKDPNKPKRPP
Sbjct: 1 MKGSKGKGTSRVSK-EALKPVDDRKVGKRKAVVKADKGIKRPTKKDLKAKKDPNKPKRPP 59
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
SAFFVFLEEFRK YK+E+PNVKAVSAV
Sbjct: 60 SAFFVFLEEFRKEYKRENPNVKAVSAVG 87
>gi|359481661|ref|XP_002279947.2| PREDICTED: high mobility group B protein 1-like [Vitis vinifera]
gi|147815135|emb|CAN74566.1| hypothetical protein VITISV_023651 [Vitis vinifera]
gi|297740214|emb|CBI30396.3| unnamed protein product [Vitis vinifera]
Length = 168
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/88 (68%), Positives = 70/88 (79%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK +GKGA ++D E +KP EDR GKRKA +KA +SS + T K AKKDPNKPKRPP
Sbjct: 1 MKAAKGKGAARRDTKEALKPAEDRKIGKRKAAVKAEKSSKRATTKDKKAKKDPNKPKRPP 60
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
SAFFVFLEEFRKV+K+E+PNVKAVSAV
Sbjct: 61 SAFFVFLEEFRKVFKKENPNVKAVSAVG 88
>gi|312281849|dbj|BAJ33790.1| unnamed protein product [Thellungiella halophila]
Length = 185
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 67/88 (76%), Gaps = 3/88 (3%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK +GK VK K E +KPV+DR GKRKA A++++ + T+ K AKKDPNKPKR P
Sbjct: 1 MKTAKGKDKVKTTK-ETLKPVDDRKVGKRKAP--AAKATKRETRKEKRAKKDPNKPKRAP 57
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
SAFFVFLE+FR+ +K+E+PNVKAVSAV
Sbjct: 58 SAFFVFLEDFRQTFKKENPNVKAVSAVG 85
>gi|297819892|ref|XP_002877829.1| hypothetical protein ARALYDRAFT_323737 [Arabidopsis lyrata subsp.
lyrata]
gi|297323667|gb|EFH54088.1| hypothetical protein ARALYDRAFT_323737 [Arabidopsis lyrata subsp.
lyrata]
Length = 185
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 65/88 (73%), Gaps = 3/88 (3%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK +GK VK K E +KPV+DR GKRKA A +++ + T+ K AKKDPNKPKR P
Sbjct: 1 MKTAKGKDKVKTTK-EALKPVDDRKVGKRKAP--AEKATKRETRKEKKAKKDPNKPKRAP 57
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
SAFFVFLE+FR +K+E+PNVKAVSAV
Sbjct: 58 SAFFVFLEDFRVTFKKENPNVKAVSAVG 85
>gi|42572635|ref|NP_974413.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|222423104|dbj|BAH19531.1| AT3G51880 [Arabidopsis thaliana]
gi|332645335|gb|AEE78856.1| high mobility group protein B1 [Arabidopsis thaliana]
Length = 185
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 64/88 (72%), Gaps = 3/88 (3%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK +GK VK K E +KPV+DR GKRKA A + + + T+ K AKKDPNKPKR P
Sbjct: 1 MKTAKGKDKVKTTK-EALKPVDDRKVGKRKAP--AEKPTKRETRKEKKAKKDPNKPKRAP 57
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
SAFFVFLE+FR +K+E+PNVKAVSAV
Sbjct: 58 SAFFVFLEDFRVTFKKENPNVKAVSAVG 85
>gi|15231065|ref|NP_190756.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|145332807|ref|NP_001078269.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|75274976|sp|O49595.1|HMGB1_ARATH RecName: Full=High mobility group B protein 1; AltName: Full=High
mobility group protein A; Short=AtHMGalpha; Short=HMG
alpha; AltName: Full=Nucleosome/chromatin assembly
factor group D 01; Short=Nucleosome/chromatin assembly
factor group D 1
gi|2832357|emb|CAA74400.1| HMG protein [Arabidopsis thaliana]
gi|3068715|gb|AAC14415.1| unknown [Arabidopsis thaliana]
gi|15912191|gb|AAL08229.1| At3g51880/ORF13 [Arabidopsis thaliana]
gi|21360557|gb|AAM47475.1| At3g51880/ORF13 [Arabidopsis thaliana]
gi|332645334|gb|AEE78855.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|332645336|gb|AEE78857.1| high mobility group protein B1 [Arabidopsis thaliana]
Length = 178
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 64/88 (72%), Gaps = 3/88 (3%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK +GK VK K E +KPV+DR GKRKA A + + + T+ K AKKDPNKPKR P
Sbjct: 1 MKTAKGKDKVKTTK-EALKPVDDRKVGKRKAP--AEKPTKRETRKEKKAKKDPNKPKRAP 57
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
SAFFVFLE+FR +K+E+PNVKAVSAV
Sbjct: 58 SAFFVFLEDFRVTFKKENPNVKAVSAVG 85
>gi|334185909|ref|NP_001190062.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|332645337|gb|AEE78858.1| high mobility group protein B1 [Arabidopsis thaliana]
Length = 161
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 64/88 (72%), Gaps = 3/88 (3%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK +GK VK K E +KPV+DR GKRKA A + + + T+ K AKKDPNKPKR P
Sbjct: 1 MKTAKGKDKVKTTK-EALKPVDDRKVGKRKAP--AEKPTKRETRKEKKAKKDPNKPKRAP 57
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
SAFFVFLE+FR +K+E+PNVKAVSAV
Sbjct: 58 SAFFVFLEDFRVTFKKENPNVKAVSAVG 85
>gi|407971018|ref|NP_001238631.1| uncharacterized protein LOC100499704 [Glycine max]
gi|255625939|gb|ACU13314.1| unknown [Glycine max]
Length = 166
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 64/87 (73%), Gaps = 3/87 (3%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK +GKGA + K E +KPV+DR GKRKA K RSS K K AKKDPNKPKRPP
Sbjct: 1 MKNAKGKGAARASK-ESLKPVDDRKVGKRKASGKPGRSSA--PKKEKKAKKDPNKPKRPP 57
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAV 87
SAFFVFLEEFRK +K E+PNVKAVS V
Sbjct: 58 SAFFVFLEEFRKTFKAENPNVKAVSVV 84
>gi|255574381|ref|XP_002528104.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223532493|gb|EEF34283.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 171
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 64/87 (73%), Gaps = 1/87 (1%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK ++G GA K K+ +KP +DR GKRKA RSS + K K AKKDPNKPKRPP
Sbjct: 1 MKNSKGTGAAKASKD-ALKPADDRKVGKRKAAAAVDRSSKLKAKREKKAKKDPNKPKRPP 59
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAV 87
SAFFVFLEEFRK +K+E+P+V +V+AV
Sbjct: 60 SAFFVFLEEFRKTFKKENPSVTSVAAV 86
>gi|357506009|ref|XP_003623293.1| HMG1/2-like protein [Medicago truncatula]
gi|355498308|gb|AES79511.1| HMG1/2-like protein [Medicago truncatula]
gi|388511215|gb|AFK43669.1| unknown [Medicago truncatula]
Length = 170
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 63/86 (73%), Gaps = 3/86 (3%)
Query: 3 VTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSA 62
+T+GKG K + + +KPV+DR GKRKA K + + + K AKKDPNKPKRPPSA
Sbjct: 1 MTKGKGTAKTSR-DALKPVDDRKVGKRKAAAKPEKVPKTKKE--KKAKKDPNKPKRPPSA 57
Query: 63 FFVFLEEFRKVYKQEHPNVKAVSAVS 88
FFVFLE+FRK +K E+PNVKAVSAV
Sbjct: 58 FFVFLEDFRKTFKAENPNVKAVSAVG 83
>gi|388497798|gb|AFK36965.1| unknown [Medicago truncatula]
Length = 170
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 63/86 (73%), Gaps = 3/86 (3%)
Query: 3 VTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSA 62
+T+GKG K + + +KPV+DR GKRKA K + + + K AKKDPNKPKRPPSA
Sbjct: 1 MTKGKGTAKTSR-DALKPVDDRKVGKRKAAAKPEKVPKTKKE--KKAKKDPNKPKRPPSA 57
Query: 63 FFVFLEEFRKVYKQEHPNVKAVSAVS 88
FFVFLE+FRK +K E+PNVKAVSAV
Sbjct: 58 FFVFLEDFRKTFKAENPNVKAVSAVG 83
>gi|351725417|ref|NP_001235556.1| uncharacterized protein LOC100305961 [Glycine max]
gi|255627113|gb|ACU13901.1| unknown [Glycine max]
Length = 169
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 62/87 (71%), Gaps = 3/87 (3%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK +GKGA + K E +KPV+DR GKRKA K +S + K K AKKDPNKPKRPP
Sbjct: 1 MKTAKGKGAARPSK-ESLKPVDDRKVGKRKASGKPEKS--RAPKKEKKAKKDPNKPKRPP 57
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAV 87
SAF VFLEEFRK +K E+P VKAVS V
Sbjct: 58 SAFLVFLEEFRKTFKAENPLVKAVSVV 84
>gi|116778852|gb|ABK21026.1| unknown [Picea sitchensis]
gi|116782574|gb|ABK22556.1| unknown [Picea sitchensis]
gi|116782678|gb|ABK22606.1| unknown [Picea sitchensis]
gi|116782786|gb|ABK22657.1| unknown [Picea sitchensis]
gi|116782898|gb|ABK22712.1| unknown [Picea sitchensis]
gi|116791878|gb|ABK26144.1| unknown [Picea sitchensis]
gi|148907501|gb|ABR16881.1| unknown [Picea sitchensis]
gi|224284566|gb|ACN40016.1| unknown [Picea sitchensis]
gi|224285212|gb|ACN40332.1| unknown [Picea sitchensis]
gi|224286734|gb|ACN41070.1| unknown [Picea sitchensis]
Length = 157
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 58/80 (72%)
Query: 8 GAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFL 67
G K + + +K VE++ GKRK K S+ S+++ K + A KDPNKPKRP SAFFVF+
Sbjct: 4 GKAKNEASSTLKKVEEKPIGKRKTAAKESKVSSRQEKKGRKAAKDPNKPKRPASAFFVFM 63
Query: 68 EEFRKVYKQEHPNVKAVSAV 87
E+FRK YK+++PNVK+VS V
Sbjct: 64 EDFRKTYKEKNPNVKSVSVV 83
>gi|312282031|dbj|BAJ33881.1| unnamed protein product [Thellungiella halophila]
Length = 141
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 49/65 (75%), Gaps = 2/65 (3%)
Query: 26 AGKRKAVLKASRSS-NKR-TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA 83
GK K ++S+ S NK+ TK K A KDPNKPKRP SAFFVF+EEFR+ YK+EHPN K+
Sbjct: 3 GGKSKTETRSSKLSVNKKPTKGGKGAAKDPNKPKRPASAFFVFMEEFRETYKKEHPNNKS 62
Query: 84 VSAVS 88
V+AV
Sbjct: 63 VAAVG 67
>gi|22135473|gb|AAM93217.1|AF527616_1 nucleasome/chromatin assembly factor D protein NFD101 [Zea mays]
gi|2196672|emb|CAA70045.1| HMGd1 [Zea mays]
gi|194698578|gb|ACF83373.1| unknown [Zea mays]
gi|414886616|tpg|DAA62630.1| TPA: HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 126
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 43/52 (82%), Gaps = 4/52 (7%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
SR S ++TK A+KDPNKPKRPPSAFFVF+EEFRK YK++HPNVK VS +
Sbjct: 12 SRLSVRKTK----AEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVI 59
>gi|162459697|ref|NP_001105649.1| HMG-like nucleosome/chromatin assembly factor D [Zea mays]
gi|17017392|gb|AAL33650.1|AF440221_1 HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 126
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 43/52 (82%), Gaps = 4/52 (7%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
SR S ++TK A+KDPNKPKRPPSAFFVF+EEFRK YK++HPNVK VS +
Sbjct: 12 SRLSVRKTK----AEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSLI 59
>gi|414886617|tpg|DAA62631.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 119
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 43/52 (82%), Gaps = 4/52 (7%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
SR S ++TK A+KDPNKPKRPPSAFFVF+EEFRK YK++HPNVK VS +
Sbjct: 12 SRLSVRKTK----AEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVI 59
>gi|2894109|emb|CAA05365.1| high mobility group protein [Solanum tuberosum]
Length = 141
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 39/46 (84%)
Query: 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
+K K+A KDPNKPKRPPSAFFVF+EEFRK YK++HPN K+V+ V
Sbjct: 23 SKKAKNAAKDPNKPKRPPSAFFVFMEEFRKTYKEKHPNNKSVAVVG 68
>gi|414886615|tpg|DAA62629.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 123
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 43/52 (82%), Gaps = 4/52 (7%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
SR S ++TK A+KDPNKPKRPPSAFFVF+EEFRK YK++HPNVK VS +
Sbjct: 12 SRLSVRKTK----AEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVI 59
>gi|388522261|gb|AFK49192.1| unknown [Lotus japonicus]
Length = 173
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 59/86 (68%), Gaps = 4/86 (4%)
Query: 3 VTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSA 62
+T+GK A K K EV+KPV+DR GKRKA +K + + + K K KPKRPPSA
Sbjct: 1 MTKGKKAGKTSK-EVLKPVDDRKVGKRKAAVKPDKGTAGKAKKAKKDPN---KPKRPPSA 56
Query: 63 FFVFLEEFRKVYKQEHPNVKAVSAVS 88
FFVFLE+FRK +K E+PNVK VSAV
Sbjct: 57 FFVFLEDFRKTFKAENPNVKGVSAVG 82
>gi|414886614|tpg|DAA62628.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 118
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 43/52 (82%), Gaps = 4/52 (7%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
SR S ++TK A+KDPNKPKRPPSAFFVF+EEFRK YK++HPNVK VS +
Sbjct: 12 SRLSVRKTK----AEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVI 59
>gi|356508616|ref|XP_003523051.1| PREDICTED: HMG1/2-like protein-like [Glycine max]
Length = 152
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/40 (80%), Positives = 36/40 (90%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
A KDPNKPKRPPSAFFVF+EEFRKV+ +EHP+ KAVSAV
Sbjct: 37 AAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPDNKAVSAVG 76
>gi|125564627|gb|EAZ10007.1| hypothetical protein OsI_32309 [Oryza sativa Indica Group]
Length = 139
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 43/53 (81%), Gaps = 4/53 (7%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
SR S ++TK A+KDPNKPKRPPSAFFVF+E+FRK YK++HPNVK VS +
Sbjct: 12 SRLSVRKTK----AEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIG 60
>gi|222642048|gb|EEE70180.1| hypothetical protein OsJ_30257 [Oryza sativa Japonica Group]
Length = 139
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 43/53 (81%), Gaps = 4/53 (7%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
SR S ++TK A+KDPNKPKRPPSAFFVF+E+FRK YK++HPNVK VS +
Sbjct: 12 SRLSVRKTK----AEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIG 60
>gi|115480551|ref|NP_001063869.1| Os09g0551600 [Oryza sativa Japonica Group]
gi|50726318|dbj|BAD33893.1| putative HMGd1 [Oryza sativa Japonica Group]
gi|113632102|dbj|BAF25783.1| Os09g0551600 [Oryza sativa Japonica Group]
gi|213959176|gb|ACJ54922.1| HMG type nucleosome/chromatin assembly factor [Oryza sativa
Japonica Group]
gi|215694881|dbj|BAG90072.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 127
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 43/53 (81%), Gaps = 4/53 (7%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
SR S ++TK A+KDPNKPKRPPSAFFVF+E+FRK YK++HPNVK VS +
Sbjct: 12 SRLSVRKTK----AEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIG 60
>gi|116781378|gb|ABK22074.1| unknown [Picea sitchensis]
gi|224284710|gb|ACN40086.1| unknown [Picea sitchensis]
Length = 154
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 43/56 (76%), Gaps = 1/56 (1%)
Query: 32 VLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
+L A NKR K+ K DPN+PKRPP+AFFV+LEEFRK +KQ+HP+VK V+AV
Sbjct: 25 LLSAKEKPNKRQAKPKAVK-DPNQPKRPPTAFFVYLEEFRKTFKQKHPDVKGVTAV 79
>gi|1052956|gb|AAC50019.1| high mobility group protein 2 HMG2 [Ipomoea nil]
Length = 146
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 39/46 (84%)
Query: 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
TK K + KDPNKPKRPPSAFFVF+E+FRK YK++HPN K+V+AV
Sbjct: 23 TKKSKKSVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAAVG 68
>gi|729736|sp|P40619.1|HMGL_IPONI RecName: Full=HMG1/2-like protein
Length = 144
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 38/46 (82%)
Query: 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
TK K A KDPNKPKRPPSAFFVF+E+FRK YK++HPN K+V+ V
Sbjct: 23 TKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVG 68
>gi|414590133|tpg|DAA40704.1| TPA: hypothetical protein ZEAMMB73_374315 [Zea mays]
Length = 140
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 42/53 (79%), Gaps = 4/53 (7%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
SR S ++TK +KDPNKPKRPP+AFFVF+EEFRK YK++HPNVK VS +
Sbjct: 32 SRLSVRKTK----VEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIG 80
>gi|351725567|ref|NP_001236841.1| HMG1/2-like protein [Glycine max]
gi|123379|sp|P26585.1|HMGL_SOYBN RecName: Full=HMG1/2-like protein; AltName: Full=Protein SB11
gi|18645|emb|CAA41200.1| HMG-1 like protein gene [Glycine max]
Length = 152
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/40 (80%), Positives = 35/40 (87%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
A KDPNKPKRPPSAFFVF+EEFRKV+ +EHP KAVSAV
Sbjct: 37 AAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVG 76
>gi|238013344|gb|ACR37707.1| unknown [Zea mays]
gi|414590135|tpg|DAA40706.1| TPA: HMG1/2-like protein [Zea mays]
Length = 127
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 42/53 (79%), Gaps = 4/53 (7%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
SR S ++TK +KDPNKPKRPP+AFFVF+EEFRK YK++HPNVK VS +
Sbjct: 12 SRLSVRKTK----VEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIG 60
>gi|414590134|tpg|DAA40705.1| TPA: hypothetical protein ZEAMMB73_374315 [Zea mays]
Length = 120
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 42/53 (79%), Gaps = 4/53 (7%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
SR S ++TK +KDPNKPKRPP+AFFVF+EEFRK YK++HPNVK VS +
Sbjct: 12 SRLSVRKTK----VEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIG 60
>gi|224081483|ref|XP_002306429.1| high mobility group family [Populus trichocarpa]
gi|222855878|gb|EEE93425.1| high mobility group family [Populus trichocarpa]
Length = 144
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 37/46 (80%)
Query: 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
TK K A KDPNKPKRP SAFFVF+E+FRK YK+ HPN K+V+AV
Sbjct: 26 TKASKKAAKDPNKPKRPASAFFVFMEDFRKQYKESHPNNKSVAAVG 71
>gi|118484838|gb|ABK94286.1| unknown [Populus trichocarpa]
Length = 144
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 37/46 (80%)
Query: 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
TK K A KDPNKPKRP SAFFVF+E+FRK YK+ HPN K+V+AV
Sbjct: 26 TKASKKAAKDPNKPKRPASAFFVFMEDFRKQYKESHPNNKSVAAVG 71
>gi|2196548|gb|AAB61215.1| DNA-binding protein [Nicotiana tabacum]
Length = 142
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/37 (78%), Positives = 34/37 (91%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
DPNKPKRPPSAFFVF+EEFRK YK++HPN K+V+AV
Sbjct: 32 DPNKPKRPPSAFFVFMEEFRKTYKEKHPNNKSVAAVG 68
>gi|226505018|ref|NP_001151148.1| LOC100284781 [Zea mays]
gi|195644628|gb|ACG41782.1| HMG1/2-like protein [Zea mays]
Length = 127
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 41/53 (77%), Gaps = 4/53 (7%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
SR S ++TK +KDPNKPKRPP+ FFVF+EEFRK YK++HPNVK VS +
Sbjct: 12 SRLSVRKTK----VEKDPNKPKRPPTTFFVFMEEFRKDYKEKHPNVKQVSVIG 60
>gi|168028752|ref|XP_001766891.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681870|gb|EDQ68293.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 160
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 57/92 (61%), Gaps = 7/92 (7%)
Query: 1 MKVTRGK---GAV-KKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKP 56
MK +GK GAV K+D E V V+D+ KRK +K + R KDPN P
Sbjct: 1 MKEAKGKKGVGAVAKRDVKEKVTKVQDKDIKKRKGPVKEPKG---RKAKSAKKAKDPNAP 57
Query: 57 KRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KRP +AFF+FL EFR+V+K+E+PNVK V+AV
Sbjct: 58 KRPATAFFIFLNEFREVFKKENPNVKGVAAVG 89
>gi|217075707|gb|ACJ86213.1| unknown [Medicago truncatula]
gi|388513073|gb|AFK44598.1| unknown [Medicago truncatula]
Length = 142
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 37/45 (82%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
K K A KDPNKPKRPPSAFFVF+ +FR+ YK++HPN K+V+AV
Sbjct: 25 KQTKKAAKDPNKPKRPPSAFFVFMSDFREQYKKDHPNNKSVAAVG 69
>gi|357159916|ref|XP_003578598.1| PREDICTED: HMG1/2-like protein-like [Brachypodium distachyon]
Length = 128
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 42/53 (79%), Gaps = 4/53 (7%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
SR S ++TK A+KDPN+PKRPPSAFFVF+E FRK YK++HP+VK VS V
Sbjct: 12 SRLSVRKTK----AEKDPNQPKRPPSAFFVFMEGFRKDYKEKHPDVKQVSVVG 60
>gi|302796105|ref|XP_002979815.1| hypothetical protein SELMODRAFT_18312 [Selaginella
moellendorffii]
gi|302807533|ref|XP_002985461.1| hypothetical protein SELMODRAFT_18313 [Selaginella
moellendorffii]
gi|300146924|gb|EFJ13591.1| hypothetical protein SELMODRAFT_18313 [Selaginella
moellendorffii]
gi|300152575|gb|EFJ19217.1| hypothetical protein SELMODRAFT_18312 [Selaginella
moellendorffii]
Length = 84
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 36/45 (80%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
K K A KDPN PKRPP+AFFVFLE FR+ YK++HP+VK V+AV
Sbjct: 1 KKEKKASKDPNLPKRPPTAFFVFLESFRQQYKEDHPDVKGVAAVG 45
>gi|79318295|ref|NP_001031075.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|332191889|gb|AEE30010.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 147
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 35/45 (77%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
K K A KDPNKPKRP SAFFVF+E+FR YK+EHP K+V+AV
Sbjct: 23 KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVG 67
>gi|449456873|ref|XP_004146173.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|449495123|ref|XP_004159740.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|63020536|gb|AAY26151.1| high mobility group protein [Cucumis sativus]
Length = 146
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/37 (78%), Positives = 33/37 (89%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
DPNKPKRP SAFFVF+EEFRK YK+EHPN K+V+AV
Sbjct: 34 DPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVG 70
>gi|297845042|ref|XP_002890402.1| hypothetical protein ARALYDRAFT_472304 [Arabidopsis lyrata subsp.
lyrata]
gi|297336244|gb|EFH66661.1| hypothetical protein ARALYDRAFT_472304 [Arabidopsis lyrata subsp.
lyrata]
Length = 141
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 36/45 (80%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
K K A KDPNKPKRP SAFFVF+E+FR+ YK+EHP K+V+AV
Sbjct: 25 KGGKGAAKDPNKPKRPSSAFFVFMEDFRETYKKEHPKNKSVAAVG 69
>gi|148250187|gb|ABQ53545.1| HMG1 protein [Arachis diogoi]
Length = 141
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/40 (75%), Positives = 34/40 (85%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
A KDPNKPKRPPSAFFVF+EEFRK + ++HP KAVSAV
Sbjct: 26 AAKDPNKPKRPPSAFFVFMEEFRKQFNKDHPENKAVSAVG 65
>gi|308569654|gb|ADO34793.1| high mobility group box 2 protein [Gossypium hirsutum]
Length = 146
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 39/52 (75%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
+S+ K K A KDPNKPKRP SAFFVF+EEFR+ YK+EHP K+V+AV
Sbjct: 20 KSTTKAGKKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKEHPKNKSVAAVG 71
>gi|116790306|gb|ABK25570.1| unknown [Picea sitchensis]
gi|224286844|gb|ACN41125.1| unknown [Picea sitchensis]
gi|294461904|gb|ADE76508.1| unknown [Picea sitchensis]
Length = 151
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/37 (78%), Positives = 32/37 (86%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
DPNKPKRPPSAFFVFL+EFRK YKQ +PN +VSAV
Sbjct: 42 DPNKPKRPPSAFFVFLDEFRKEYKQANPNANSVSAVG 78
>gi|145323962|ref|NP_001077570.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|332191890|gb|AEE30011.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 140
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 35/44 (79%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
K K A KDPNKPKRP SAFFVF+E+FR YK+EHP K+V+AV
Sbjct: 23 KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAV 66
>gi|357517687|ref|XP_003629132.1| HMG1/2-like protein [Medicago truncatula]
gi|355523154|gb|AET03608.1| HMG1/2-like protein [Medicago truncatula]
Length = 75
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 37/46 (80%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
K K A KDPNKPKRPPSAFFVF+ +FR+ YK++HPN K+V+A+
Sbjct: 25 KQTKKAAKDPNKPKRPPSAFFVFMSDFREQYKKDHPNNKSVAALHC 70
>gi|388504718|gb|AFK40425.1| unknown [Lotus japonicus]
Length = 152
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 35/40 (87%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
A KDPNKPKRPPSAFFVF+E+FRK++ +E+P KAVSAV
Sbjct: 37 AAKDPNKPKRPPSAFFVFMEDFRKIFNKENPENKAVSAVG 76
>gi|194466163|gb|ACF74312.1| high mobility group protein 1 [Arachis hypogaea]
Length = 139
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/38 (73%), Positives = 33/38 (86%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KDPNKPKRPPSAFFVF+ EFR+ YK+EHPN K+V+ V
Sbjct: 31 KDPNKPKRPPSAFFVFMSEFREQYKKEHPNNKSVAVVG 68
>gi|8886929|gb|AAF80615.1|AC069251_8 F2D10.18 [Arabidopsis thaliana]
Length = 662
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 35/44 (79%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
K K A KDPNKPKRP SAFFVF+E+FR YK+EHP K+V+AV
Sbjct: 544 KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAV 587
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 35/41 (85%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
K+A KDPNKPKRP SAFFVF+E+FR+ +K+E+P K+V+ V
Sbjct: 406 KAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATV 446
>gi|18394900|ref|NP_564124.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|75220405|sp|P93047.1|HMGB3_ARATH RecName: Full=High mobility group B protein 3; AltName: Full=High
mobility group protein B 2; Short=AtHMGbeta2; Short=HMG
beta 2; AltName: Full=Nucleosome/chromatin assembly
factor group D 03; Short=Nucleosome/chromatin assembly
factor group D 3
gi|15724174|gb|AAL06479.1|AF411789_1 At1g20690/F2D10_15 [Arabidopsis thaliana]
gi|1694976|emb|CAA70691.1| HMG1 [Arabidopsis thaliana]
gi|2832361|emb|CAA74402.1| HMG protein [Arabidopsis thaliana]
gi|20453325|gb|AAM19901.1| At1g20690/F2D10_15 [Arabidopsis thaliana]
gi|21537072|gb|AAM61413.1| unknown [Arabidopsis thaliana]
gi|22530942|gb|AAM96975.1| expressed protein [Arabidopsis thaliana]
gi|23198424|gb|AAN15739.1| expressed protein [Arabidopsis thaliana]
gi|332191888|gb|AEE30009.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 141
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 35/44 (79%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
K K A KDPNKPKRP SAFFVF+E+FR YK+EHP K+V+AV
Sbjct: 23 KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAV 66
>gi|224083306|ref|XP_002306980.1| high mobility group family [Populus trichocarpa]
gi|222856429|gb|EEE93976.1| high mobility group family [Populus trichocarpa]
Length = 160
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/39 (74%), Positives = 34/39 (87%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
A KDPNKPKRP SAFFVF+EEFR+ YK+EHP K+V+AV
Sbjct: 37 AAKDPNKPKRPASAFFVFMEEFREQYKREHPKNKSVAAV 75
>gi|157382900|gb|ABV48885.1| high mobility group protein B3 [Physcomitrella patens]
Length = 158
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
Query: 16 EVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYK 75
E V V+D+ KRK +K +++ + KDPN PKRPP+AFF+FL EFR+V+K
Sbjct: 16 ERVPKVQDKDIKKRKGAVKETKAKKPKGG---KKLKDPNAPKRPPTAFFIFLNEFREVFK 72
Query: 76 QEHPNVKAVSAVS 88
+E+PNVK V+AV
Sbjct: 73 RENPNVKGVTAVG 85
>gi|168032698|ref|XP_001768855.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168032700|ref|XP_001768856.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679967|gb|EDQ66408.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679968|gb|EDQ66409.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 110
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 34/38 (89%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KDPN PKRPP+AFF+FL EFR+V+K+E+PNVK V+AV
Sbjct: 7 KDPNAPKRPPTAFFIFLNEFREVFKRENPNVKGVTAVG 44
>gi|351725757|ref|NP_001235312.1| uncharacterized protein LOC100499992 [Glycine max]
gi|255628371|gb|ACU14530.1| unknown [Glycine max]
Length = 139
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 36/44 (81%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
K + A KDPNKPKRPPSAFFVF+ EFR+ +K+EHPN K+V+ V
Sbjct: 25 KQSRKAAKDPNKPKRPPSAFFVFMSEFREQFKKEHPNNKSVAVV 68
>gi|157382898|gb|ABV48884.1| high mobility group protein B2 [Physcomitrella patens]
Length = 165
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 58/92 (63%), Gaps = 7/92 (7%)
Query: 1 MKVTRGK---GAV-KKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKP 56
MK +GK GAV K+D E V V+D+ KRK +K + ++ KDPN P
Sbjct: 1 MKEAKGKKGVGAVAKRDVKEKVTKVQDKDIKKRKGPVKEPKGGKAKSA---KKAKDPNAP 57
Query: 57 KRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KRP +AFF+FL EFR+V+K+E+PNVK V+AV
Sbjct: 58 KRPATAFFIFLNEFREVFKKENPNVKGVAAVG 89
>gi|1813329|dbj|BAA19156.1| HMG-1 [Canavalia gladiata]
Length = 141
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 35/45 (77%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
K K A KDPNKPKRPPSAFFVF+ EFR+ YK+EHP K+V+ V
Sbjct: 25 KQSKKAAKDPNKPKRPPSAFFVFMSEFREQYKKEHPTNKSVAVVG 69
>gi|18419623|gb|AAL69379.1|AF462216_1 HMG-domain containing protein [Narcissus pseudonarcissus]
Length = 106
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/39 (74%), Positives = 35/39 (89%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
A+KDPNKPKRPPSAFFVF+EEFRK +K+++PN K VS V
Sbjct: 39 AEKDPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVV 77
>gi|729737|sp|P40620.1|HMGL_VICFA RecName: Full=HMG1/2-like protein
Length = 149
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 34/38 (89%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KDPNKPKRPPSAFFVF+ +FR+ YK++HPN K+V+AV
Sbjct: 40 KDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVG 77
>gi|304651500|gb|ADM47612.1| high mobility group protein [Hevea brasiliensis]
Length = 146
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 34/40 (85%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
A KDPNKPKRP SAFFVF+EEFR+ YK+EHP K+V+AV
Sbjct: 32 AAKDPNKPKRPASAFFVFMEEFREQYKKEHPKNKSVAAVG 71
>gi|388497528|gb|AFK36830.1| unknown [Medicago truncatula]
Length = 155
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/38 (73%), Positives = 35/38 (92%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KDPNKPKRPPSAFFVF+E+FRK +K+++P+ KAVSAV
Sbjct: 40 KDPNKPKRPPSAFFVFMEDFRKQFKKDNPDNKAVSAVG 77
>gi|296088654|emb|CBI37645.3| unnamed protein product [Vitis vinifera]
Length = 154
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 40/55 (72%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
K + + K+T + A KDPNKPKRP SAFFVF+EEFRK YK++HP K+VS V
Sbjct: 23 KGAAAVGKKTAKKEKAVKDPNKPKRPASAFFVFMEEFRKQYKEKHPANKSVSVVG 77
>gi|359476975|ref|XP_003631923.1| PREDICTED: high mobility group B2 protein-like isoform 2 [Vitis
vinifera]
Length = 125
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 40/55 (72%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
K + + K+T + A KDPNKPKRP SAFFVF+EEFRK YK++HP K+VS V
Sbjct: 25 KGAAAVGKKTAKKEKAVKDPNKPKRPASAFFVFMEEFRKQYKEKHPANKSVSVVG 79
>gi|359476973|ref|XP_002280084.2| PREDICTED: high mobility group B2 protein-like isoform 1 [Vitis
vinifera]
Length = 156
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 40/55 (72%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
K + + K+T + A KDPNKPKRP SAFFVF+EEFRK YK++HP K+VS V
Sbjct: 25 KGAAAVGKKTAKKEKAVKDPNKPKRPASAFFVFMEEFRKQYKEKHPANKSVSVVG 79
>gi|388497036|gb|AFK36584.1| unknown [Medicago truncatula]
Length = 155
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/38 (73%), Positives = 35/38 (92%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KDPNKPKRPPSAFFVF+E+FRK +K+++P+ KAVSAV
Sbjct: 40 KDPNKPKRPPSAFFVFMEDFRKQFKKDNPDNKAVSAVG 77
>gi|312281681|dbj|BAJ33706.1| unnamed protein product [Thellungiella halophila]
Length = 144
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/41 (68%), Positives = 36/41 (87%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
K+A KDPNKPKRP SAFFVF+E+FR+ +K+EHP K+V+AV
Sbjct: 29 KAAAKDPNKPKRPASAFFVFMEDFRETFKKEHPKNKSVAAV 69
>gi|357640485|gb|AET87126.1| high mobility group B2 protein [Brassica napus]
Length = 145
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 33/36 (91%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
DPNKPKRP SAFFVF+E+FR+ YK++HPN K+V+AV
Sbjct: 34 DPNKPKRPASAFFVFMEDFRQTYKKDHPNNKSVAAV 69
>gi|302790391|ref|XP_002976963.1| hypothetical protein SELMODRAFT_175895 [Selaginella
moellendorffii]
gi|300155441|gb|EFJ22073.1| hypothetical protein SELMODRAFT_175895 [Selaginella
moellendorffii]
Length = 156
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 32/37 (86%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
DPN+PKRP +AFFVFLEE+RK +K +HPN+K V+AV
Sbjct: 51 DPNQPKRPATAFFVFLEEYRKTFKDKHPNIKGVAAVG 87
>gi|295913700|gb|ADG58091.1| transcription factor [Lycoris longituba]
Length = 162
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/38 (73%), Positives = 33/38 (86%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KDPNKPKRPPSAFFVF+EEFRK +K+++PN K VS V
Sbjct: 41 KDPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVG 78
>gi|295913475|gb|ADG57987.1| transcription factor [Lycoris longituba]
Length = 162
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/38 (73%), Positives = 33/38 (86%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KDPNKPKRPPSAFFVF+EEFRK +K+++PN K VS V
Sbjct: 41 KDPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVG 78
>gi|125583208|gb|EAZ24139.1| hypothetical protein OsJ_07880 [Oryza sativa Japonica Group]
Length = 170
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 10/83 (12%)
Query: 6 GKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFV 65
G GA+ + VV E + +++LKA+ + KR K S KPKRPPSAFFV
Sbjct: 18 GDGAIDHVRGSVVTGKE-----RTRSMLKAAGGAGKRKKAAAS-----GKPKRPPSAFFV 67
Query: 66 FLEEFRKVYKQEHPNVKAVSAVS 88
F+ EFR+ Y+ HP+ K+V+AVS
Sbjct: 68 FMSEFRQEYQAAHPDNKSVAAVS 90
>gi|351723773|ref|NP_001235499.1| uncharacterized protein LOC100305957 [Glycine max]
gi|255627099|gb|ACU13894.1| unknown [Glycine max]
Length = 142
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 35/45 (77%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
K K A KDPNKPK PPSAFFVF+ EFR+ +K+EHPN K+V+ V
Sbjct: 25 KQSKKAAKDPNKPKGPPSAFFVFMSEFREQFKKEHPNNKSVAVVG 69
>gi|449455609|ref|XP_004145545.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|449511984|ref|XP_004164108.1| PREDICTED: HMG1/2-like protein-like isoform 1 [Cucumis sativus]
gi|449511988|ref|XP_004164109.1| PREDICTED: HMG1/2-like protein-like isoform 2 [Cucumis sativus]
Length = 146
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 32/36 (88%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
DPNKPKRP SAFFVF+EEFRK + +E+PN KAVSAV
Sbjct: 35 DPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSAV 70
>gi|302754440|ref|XP_002960644.1| hypothetical protein SELMODRAFT_75453 [Selaginella
moellendorffii]
gi|300171583|gb|EFJ38183.1| hypothetical protein SELMODRAFT_75453 [Selaginella
moellendorffii]
Length = 134
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 33/37 (89%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
DPN+PK+P +AFF+FLEEFR+ YK++HP+VK V+A+
Sbjct: 32 DPNQPKKPATAFFIFLEEFRQTYKKDHPDVKGVAAIG 68
>gi|194466165|gb|ACF74313.1| high mobility group protein 2 [Arachis hypogaea]
Length = 153
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 33/40 (82%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
A KDPNK KRPPSAFFVF+EEFRK + ++HP KAVSAV
Sbjct: 38 AAKDPNKLKRPPSAFFVFMEEFRKQFNKDHPENKAVSAVG 77
>gi|295913458|gb|ADG57979.1| transcription factor [Lycoris longituba]
Length = 179
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/38 (73%), Positives = 33/38 (86%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KDPNKPKRPPSAFFVF+EEFRK +K+++PN K VS V
Sbjct: 59 KDPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVG 96
>gi|295913526|gb|ADG58011.1| transcription factor [Lycoris longituba]
Length = 171
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/38 (73%), Positives = 33/38 (86%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KDPNKPKRPPSAFFVF+EEFRK +K+++PN K VS V
Sbjct: 54 KDPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVG 91
>gi|302803281|ref|XP_002983394.1| hypothetical protein SELMODRAFT_117986 [Selaginella
moellendorffii]
gi|300149079|gb|EFJ15736.1| hypothetical protein SELMODRAFT_117986 [Selaginella
moellendorffii]
Length = 123
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 33/37 (89%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
DPN+PK+P +AFF+FLEEFR+ YK++HP+VK V+A+
Sbjct: 18 DPNQPKKPATAFFIFLEEFRQTYKKDHPDVKGVAAIG 54
>gi|302797885|ref|XP_002980703.1| hypothetical protein SELMODRAFT_38818 [Selaginella
moellendorffii]
gi|300151709|gb|EFJ18354.1| hypothetical protein SELMODRAFT_38818 [Selaginella
moellendorffii]
Length = 83
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 32/37 (86%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
DPN+PKRP +AFFVFLEE+RK +K +HPN+K V+AV
Sbjct: 7 DPNQPKRPATAFFVFLEEYRKTFKDKHPNIKGVAAVG 43
>gi|224065681|ref|XP_002301918.1| high mobility group family [Populus trichocarpa]
gi|222843644|gb|EEE81191.1| high mobility group family [Populus trichocarpa]
Length = 152
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 32/37 (86%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
DPNKPKRP SAFFVF+EEFR+ YK+EHP K+V+AV
Sbjct: 39 DPNKPKRPASAFFVFMEEFREQYKKEHPKNKSVAAVG 75
>gi|295913708|gb|ADG58095.1| transcription factor [Lycoris longituba]
Length = 190
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 33/37 (89%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
KDPNKPKRPPSAFFVF+EEFRK +K+++PN K VS V
Sbjct: 69 KDPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVV 105
>gi|225457566|ref|XP_002272299.1| PREDICTED: high mobility group-like isoform 1 [Vitis vinifera]
gi|359491843|ref|XP_003634333.1| PREDICTED: high mobility group-like isoform 2 [Vitis vinifera]
gi|297745562|emb|CBI40727.3| unnamed protein product [Vitis vinifera]
Length = 153
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/36 (75%), Positives = 32/36 (88%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
DPNKPKRP SAFFVF+EEFRK YK++HP+ K+VS V
Sbjct: 40 DPNKPKRPASAFFVFMEEFRKQYKEKHPSNKSVSVV 75
>gi|4468042|emb|CAB37859.1| unnamed protein product [Vicia faba var. minor]
Length = 74
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 34/38 (89%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KDPNKPKRPPSAFFVF+ +FR+ YK++HPN K+V+AV
Sbjct: 1 KDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVG 38
>gi|308569658|gb|ADO34794.1| high mobility group box 4 protein [Gossypium hirsutum]
Length = 148
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 32/37 (86%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
DPNKPKRP SAFFVF+EEFR+ YK+EHP K+V+AV
Sbjct: 35 DPNKPKRPASAFFVFMEEFREQYKKEHPKNKSVAAVG 71
>gi|118488125|gb|ABK95882.1| unknown [Populus trichocarpa]
Length = 151
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 32/37 (86%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
DPNKPKRP SAFFVF+EEFR+ YK+EHP K+V+AV
Sbjct: 39 DPNKPKRPASAFFVFMEEFREQYKKEHPKNKSVAAVG 75
>gi|413935044|gb|AFW69595.1| high mobility group protein1 [Zea mays]
Length = 97
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 50/89 (56%), Gaps = 17/89 (19%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKS-AKKDPNKPKRP 59
MK + KGA K D VK S+ + K K K A KDPNKPKR
Sbjct: 1 MKGAKSKGAAKADAKLAVK----------------SKGAEKPAKGRKGKAGKDPNKPKRA 44
Query: 60 PSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
PSAFFVF+EEFRK +K+++P K+V+AV
Sbjct: 45 PSAFFVFMEEFRKEFKEKNPKNKSVAAVG 73
>gi|295913393|gb|ADG57949.1| transcription factor [Lycoris longituba]
Length = 162
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 32/37 (86%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
DPNKPKRPPSAFFVF+EEFRK +K+++PN K VS V
Sbjct: 42 DPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVG 78
>gi|255539248|ref|XP_002510689.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223551390|gb|EEF52876.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 145
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 32/37 (86%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
DPNKPKRP SAFFVF+EEFR+ YK+EHP K+V+AV
Sbjct: 34 DPNKPKRPASAFFVFMEEFREQYKKEHPKNKSVAAVG 70
>gi|106879575|emb|CAJ38371.1| HMG-protein [Plantago major]
Length = 212
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/83 (62%), Positives = 61/83 (73%), Gaps = 4/83 (4%)
Query: 5 RGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFF 64
R K AV+K E +KPV+DR GKRKA A + K K AKKDPNKPKRPPSAFF
Sbjct: 52 RSKAAVRK---ETLKPVDDRKVGKRKAA-AAPKVKKPAAKKDKKAKKDPNKPKRPPSAFF 107
Query: 65 VFLEEFRKVYKQEHPNVKAVSAV 87
VFLEEFR+ +K+E+PN+KAVSAV
Sbjct: 108 VFLEEFRQTFKKENPNIKAVSAV 130
>gi|293335943|ref|NP_001167650.1| high mobility group protein1 [Zea mays]
gi|123378|sp|P27347.1|MNB1B_MAIZE RecName: Full=DNA-binding protein MNB1B; AltName: Full=HMG1-like
protein
gi|22329|emb|CAA41220.1| high mobility group protein [Zea mays]
gi|5441502|emb|CAB46752.1| HMGa protein [Zea mays]
gi|22347617|gb|AAM95942.1| nucleosome/chromatin assembly factor group D protein [Zea mays]
gi|194701148|gb|ACF84658.1| unknown [Zea mays]
gi|194702316|gb|ACF85242.1| unknown [Zea mays]
gi|194703290|gb|ACF85729.1| unknown [Zea mays]
gi|195606194|gb|ACG24927.1| DNA-binding protein MNB1B [Zea mays]
gi|195612638|gb|ACG28149.1| DNA-binding protein MNB1B [Zea mays]
gi|195618138|gb|ACG30899.1| DNA-binding protein MNB1B [Zea mays]
gi|195618904|gb|ACG31282.1| DNA-binding protein MNB1B [Zea mays]
gi|195619012|gb|ACG31336.1| DNA-binding protein MNB1B [Zea mays]
gi|195619124|gb|ACG31392.1| DNA-binding protein MNB1B [Zea mays]
gi|195638824|gb|ACG38880.1| DNA-binding protein MNB1B [Zea mays]
gi|195642004|gb|ACG40470.1| DNA-binding protein MNB1B [Zea mays]
gi|223972731|gb|ACN30553.1| unknown [Zea mays]
gi|223972797|gb|ACN30586.1| unknown [Zea mays]
gi|223973279|gb|ACN30827.1| unknown [Zea mays]
gi|223974975|gb|ACN31675.1| unknown [Zea mays]
gi|413935043|gb|AFW69594.1| high mobility group protein1 [Zea mays]
Length = 157
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 50/89 (56%), Gaps = 17/89 (19%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKS-AKKDPNKPKRP 59
MK + KGA K D VK S+ + K K K A KDPNKPKR
Sbjct: 1 MKGAKSKGAAKADAKLAVK----------------SKGAEKPAKGRKGKAGKDPNKPKRA 44
Query: 60 PSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
PSAFFVF+EEFRK +K+++P K+V+AV
Sbjct: 45 PSAFFVFMEEFRKEFKEKNPKNKSVAAVG 73
>gi|295913696|gb|ADG58089.1| transcription factor [Lycoris longituba]
Length = 183
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 32/37 (86%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
DPNKPKRPPSAFFVF+EEFRK +K+++PN K VS V
Sbjct: 63 DPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVG 99
>gi|397396|emb|CAA46876.1| DNA-binding protein [Zea mays]
Length = 168
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 50/89 (56%), Gaps = 17/89 (19%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKS-AKKDPNKPKRP 59
MK + KGA K D VK S+ + K K K A KDPNKPKR
Sbjct: 12 MKGAKSKGAAKADAKLAVK----------------SKGAEKPAKGRKGKAGKDPNKPKRA 55
Query: 60 PSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
PSAFFVF+EEFRK +K+++P K+V+AV
Sbjct: 56 PSAFFVFMEEFRKEFKEKNPKNKSVAAVG 84
>gi|47027098|gb|AAT08762.1| HMG transcription factor [Hyacinthus orientalis]
Length = 158
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 33/38 (86%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KDPNKPKRPPSAFFVF+E+FRK +K+++PN K VS V
Sbjct: 38 KDPNKPKRPPSAFFVFMEDFRKQFKEKNPNNKQVSVVG 75
>gi|308569660|gb|ADO34795.1| high mobility group box 1 protein [Gossypium hirsutum]
Length = 142
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 32/36 (88%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
DPNKPKRP SAFFVF+EEFR+ YK++HP K+V+AV
Sbjct: 31 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAV 66
>gi|309243128|gb|ADD74180.2| high mobility group box 3 protein [Gossypium hirsutum]
Length = 139
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 32/37 (86%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
DPNKPKRP SAFFVF+EEFRK YK+ +P+ ++VSAV
Sbjct: 34 DPNKPKRPASAFFVFMEEFRKQYKEANPDNRSVSAVG 70
>gi|295913307|gb|ADG57910.1| transcription factor [Lycoris longituba]
Length = 138
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 32/37 (86%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
DPNKPKRPPSAFFVF+EEFRK +K+++PN K VS V
Sbjct: 18 DPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVG 54
>gi|2832355|emb|CAA74403.1| HMG protein [Arabidopsis thaliana]
Length = 138
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 33/41 (80%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
K KKDPN+PKRPPSAFFVFLE+FRK + +PN K+V+ V
Sbjct: 26 KKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATV 66
>gi|145328748|ref|NP_001077909.1| high mobility group B4 protein [Arabidopsis thaliana]
gi|222423535|dbj|BAH19737.1| AT2G17560 [Arabidopsis thaliana]
gi|330251559|gb|AEC06653.1| high mobility group B4 protein [Arabidopsis thaliana]
Length = 134
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 33/42 (78%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
K KKDPN+PKRPPSAFFVFLE+FRK + +PN K+V+ V
Sbjct: 26 KKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVG 67
>gi|297836478|ref|XP_002886121.1| hypothetical protein ARALYDRAFT_480649 [Arabidopsis lyrata subsp.
lyrata]
gi|297331961|gb|EFH62380.1| hypothetical protein ARALYDRAFT_480649 [Arabidopsis lyrata subsp.
lyrata]
Length = 143
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 33/42 (78%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
K KKDPN+PKRPPSAFFVFLE+FRK + +PN K+V+ V
Sbjct: 26 KKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVG 67
>gi|15227862|ref|NP_179347.1| high mobility group B4 protein [Arabidopsis thaliana]
gi|145323080|ref|NP_001031364.2| high mobility group B4 protein [Arabidopsis thaliana]
gi|310947092|sp|Q42344.1|HMGB4_ARATH RecName: Full=High mobility group B protein 4; AltName: Full=High
mobility group protein G; Short=AtHMGgamma; Short=HMG
gamma; AltName: Full=Nucleosome/chromatin assembly
factor group D 04; Short=Nucleosome/chromatin assembly
factor group D 4
gi|13926177|gb|AAK49570.1|AF370562_1 putative HMG protein [Arabidopsis thaliana]
gi|4914377|gb|AAD32913.1| putative HMG protein [Arabidopsis thaliana]
gi|23297615|gb|AAN12992.1| putative HMG protein [Arabidopsis thaliana]
gi|330251557|gb|AEC06651.1| high mobility group B4 protein [Arabidopsis thaliana]
gi|330251558|gb|AEC06652.1| high mobility group B4 protein [Arabidopsis thaliana]
Length = 138
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 33/41 (80%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
K KKDPN+PKRPPSAFFVFLE+FRK + +PN K+V+ V
Sbjct: 26 KKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATV 66
>gi|13877775|gb|AAK43965.1|AF370150_1 putative HMG protein [Arabidopsis thaliana]
Length = 138
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 33/41 (80%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
K KKDPN+PKRPPSAFFVFLE+FRK + +PN K+V+ V
Sbjct: 26 KKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATV 66
>gi|357123079|ref|XP_003563240.1| PREDICTED: DNA-binding protein MNB1B-like [Brachypodium
distachyon]
Length = 160
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 50/90 (55%), Gaps = 18/90 (20%)
Query: 1 MKVTRGKGAVKKDKNEVVKP--VEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKR 58
MK + KGAVK D VK E AA RK A KDPNKPKR
Sbjct: 1 MKGAKSKGAVKADTKLAVKSKGAEKPAAKGRKG----------------KAGKDPNKPKR 44
Query: 59 PPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
PSAFFVF++EFRK +K+++P K+V+AV
Sbjct: 45 APSAFFVFMDEFRKEFKEKNPKNKSVAAVG 74
>gi|449464956|ref|XP_004150195.1| PREDICTED: high mobility group B protein 7-like [Cucumis sativus]
gi|449531370|ref|XP_004172659.1| PREDICTED: high mobility group B protein 7-like [Cucumis sativus]
Length = 207
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 47/73 (64%), Gaps = 5/73 (6%)
Query: 21 VEDRAAGKRKAVLKASRSSNKRTKNVKSAKK-----DPNKPKRPPSAFFVFLEEFRKVYK 75
VE + K+ A K S SS +TK ++ KK DPN PKRPP+AFF+F+++FRK YK
Sbjct: 71 VEKQTQSKKPAEKKRSASSEPKTKKSRTEKKGKKDKDPNAPKRPPTAFFIFMDDFRKSYK 130
Query: 76 QEHPNVKAVSAVS 88
+ +P+ K V V+
Sbjct: 131 EANPDSKGVKEVA 143
>gi|413935042|gb|AFW69593.1| high mobility group protein1 [Zea mays]
Length = 220
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 50/89 (56%), Gaps = 17/89 (19%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKS-AKKDPNKPKRP 59
MK + KGA K D VK S+ + K K K A KDPNKPKR
Sbjct: 1 MKGAKSKGAAKADAKLAVK----------------SKGAEKPAKGRKGKAGKDPNKPKRA 44
Query: 60 PSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
PSAFFVF+EEFRK +K+++P K+V+AV
Sbjct: 45 PSAFFVFMEEFRKEFKEKNPKNKSVAAVG 73
>gi|21592453|gb|AAM64404.1| putative HMG protein [Arabidopsis thaliana]
Length = 138
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 32/38 (84%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
KKDPN+PKRPPSAFFVFLE+FRK + +PN K+V+ V
Sbjct: 29 KKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATV 66
>gi|346467547|gb|AEO33618.1| hypothetical protein [Amblyomma maculatum]
Length = 146
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 35/40 (87%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
A KDPNKPKR PSAFFVFL+EFRK +K+++P K+V+AV+
Sbjct: 35 AAKDPNKPKRAPSAFFVFLDEFRKEFKEKNPENKSVAAVT 74
>gi|79318286|ref|NP_001031074.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|297845040|ref|XP_002890401.1| hypothetical protein ARALYDRAFT_472301 [Arabidopsis lyrata subsp.
lyrata]
gi|297336243|gb|EFH66660.1| hypothetical protein ARALYDRAFT_472301 [Arabidopsis lyrata subsp.
lyrata]
gi|332191886|gb|AEE30007.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 142
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 35/41 (85%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
K+A KDPNKPKRP SAFFVF+E+FR+ +K+E+P K+V+ V
Sbjct: 29 KAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATV 69
>gi|115447831|ref|NP_001047695.1| Os02g0670400 [Oryza sativa Japonica Group]
gi|50251344|dbj|BAD28320.1| putative high mobility group protein [Oryza sativa Japonica
Group]
gi|50252158|dbj|BAD28154.1| putative high mobility group protein [Oryza sativa Japonica
Group]
gi|113537226|dbj|BAF09609.1| Os02g0670400 [Oryza sativa Japonica Group]
Length = 145
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 38/56 (67%), Gaps = 5/56 (8%)
Query: 33 LKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
LKA+ + KR K S KPKRPPSAFFVF+ EFR+ Y+ HP+ K+V+AVS
Sbjct: 15 LKAAGGAGKRKKAAAS-----GKPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVS 65
>gi|115470082|ref|NP_001058640.1| Os06g0728000 [Oryza sativa Japonica Group]
gi|3885888|gb|AAC78104.1| high mobility group protein [Oryza sativa Japonica Group]
gi|23345287|gb|AAN28722.1| HMG1 protein [Oryza sativa Indica Group]
gi|30267833|gb|AAP21609.1| HMGB1 [Oryza sativa Indica Group]
gi|54291150|dbj|BAD61823.1| HMGB1 [Oryza sativa Japonica Group]
gi|113596680|dbj|BAF20554.1| Os06g0728000 [Oryza sativa Japonica Group]
gi|213959190|gb|ACJ54929.1| HMG protein [Oryza sativa Japonica Group]
gi|215692803|dbj|BAG88247.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222636260|gb|EEE66392.1| hypothetical protein OsJ_22728 [Oryza sativa Japonica Group]
Length = 157
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 49/90 (54%), Gaps = 18/90 (20%)
Query: 1 MKVTRGKGAVKKDKNEVVKP--VEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKR 58
MK + KGA K D VK E AA RK A KDPNKPKR
Sbjct: 1 MKGAKSKGAAKPDAKLAVKSKGAEKPAAKGRKG----------------KAGKDPNKPKR 44
Query: 59 PPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
PSAFFVF+EEFRK +K+++P K+V+AV
Sbjct: 45 APSAFFVFMEEFRKEFKEKNPKNKSVAAVG 74
>gi|436424|emb|CAA54168.1| HMG 1 protein [Pisum sativum]
Length = 154
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 33/38 (86%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KDPNKPKRPPSAFFVF+E+FRK +K+ + + KAVSAV
Sbjct: 40 KDPNKPKRPPSAFFVFMEDFRKQFKKGNADNKAVSAVG 77
>gi|18700443|dbj|BAB85204.1| high mobility group box protein 2 [Oryza sativa Japonica Group]
gi|125540625|gb|EAY87020.1| hypothetical protein OsI_08417 [Oryza sativa Indica Group]
Length = 145
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 37/56 (66%), Gaps = 5/56 (8%)
Query: 33 LKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
LKA+ + KR K S KPKRPPSAFFVF+ EFR+ Y+ HP K+V+AVS
Sbjct: 15 LKAAGGAGKRKKAAAS-----GKPKRPPSAFFVFMSEFRQEYQAAHPGNKSVAAVS 65
>gi|18394898|ref|NP_564123.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|75219648|sp|O49596.1|HMGB2_ARATH RecName: Full=High mobility group B protein 2; AltName: Full=High
mobility group protein B 1; Short=AtHMGbeta1; Short=HMG
beta 1; AltName: Full=Nucleosome/chromatin assembly
factor group D 02; Short=Nucleosome/chromatin assembly
factor group D 2
gi|13877971|gb|AAK44063.1|AF370248_1 unknown protein [Arabidopsis thaliana]
gi|2832359|emb|CAA74401.1| HMG protein [Arabidopsis thaliana]
gi|17104699|gb|AAL34238.1| unknown protein [Arabidopsis thaliana]
gi|21536964|gb|AAM61305.1| unknown [Arabidopsis thaliana]
gi|26452113|dbj|BAC43146.1| unknown protein [Arabidopsis thaliana]
gi|225897948|dbj|BAH30306.1| hypothetical protein [Arabidopsis thaliana]
gi|332191885|gb|AEE30006.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 144
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 35/41 (85%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
K+A KDPNKPKRP SAFFVF+E+FR+ +K+E+P K+V+ V
Sbjct: 29 KAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATV 69
>gi|145323960|ref|NP_001077569.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|332191887|gb|AEE30008.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 143
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 35/41 (85%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
K+A KDPNKPKRP SAFFVF+E+FR+ +K+E+P K+V+ V
Sbjct: 29 KAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATV 69
>gi|218198917|gb|EEC81344.1| hypothetical protein OsI_24530 [Oryza sativa Indica Group]
Length = 163
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 49/88 (55%), Gaps = 14/88 (15%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK + KGA K D VK + G K K + A KDPNKPKR P
Sbjct: 1 MKGAKSKGAAKPDAKLAVK-----SKGAEKPAAKGRKGK---------AGKDPNKPKRAP 46
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
SAFFVF+EEFRK +K+++P K+V+AV
Sbjct: 47 SAFFVFMEEFRKEFKEKNPKNKSVAAVG 74
>gi|346467231|gb|AEO33460.1| hypothetical protein [Amblyomma maculatum]
Length = 115
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 31/40 (77%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
+KDPNKPKRPP+ FFVF+E FRK YK+ HP K+V+ V
Sbjct: 5 GEKDPNKPKRPPTGFFVFMEGFRKQYKEAHPKNKSVAVVG 44
>gi|339716048|gb|AEJ88271.1| putative HMG DNA-binding protein [Wolffia arrhiza]
Length = 148
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/32 (78%), Positives = 29/32 (90%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA 83
DPNKPKR PSAFFVFLEEFRK YK++HP+ K+
Sbjct: 37 DPNKPKRAPSAFFVFLEEFRKEYKEKHPDNKS 68
>gi|357484151|ref|XP_003612362.1| HMG1/2-like protein [Medicago truncatula]
gi|355513697|gb|AES95320.1| HMG1/2-like protein [Medicago truncatula]
Length = 140
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 10/71 (14%)
Query: 18 VKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQE 77
KP ++R KRK ++ S K KDPNKPKRPPSAFFVF+ EFR+ +K+E
Sbjct: 8 AKPADNRL--KRKGAGTGTKQSKK--------AKDPNKPKRPPSAFFVFMSEFRERFKKE 57
Query: 78 HPNVKAVSAVS 88
+P+ K+V+ V
Sbjct: 58 NPSNKSVAVVG 68
>gi|295913196|gb|ADG57857.1| transcription factor [Lycoris longituba]
Length = 143
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
A KDPNKPKRPPSAFFVF+E FRK +K ++P K+++AV
Sbjct: 26 AGKDPNKPKRPPSAFFVFMEGFRKEFKDKNPKNKSIAAVG 65
>gi|413943061|gb|AFW75710.1| hypothetical protein ZEAMMB73_996127 [Zea mays]
Length = 95
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 42/55 (76%), Gaps = 1/55 (1%)
Query: 36 SRSSNKRTKNVKS-AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
S+ + K TK K+ A KDPNKPKR P+AFFV + EFRK +K+++P +K+V+AV +
Sbjct: 25 SKGAEKPTKGRKAKAGKDPNKPKRAPNAFFVLMGEFRKEFKEKNPKIKSVAAVEL 79
>gi|357484153|ref|XP_003612363.1| HMG1/2-like protein [Medicago truncatula]
gi|355513698|gb|AES95321.1| HMG1/2-like protein [Medicago truncatula]
Length = 94
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 37/46 (80%), Gaps = 1/46 (2%)
Query: 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
TK K AK DPNKPKRPPSAFFVF+ EFR+ +K+E+P+ K+V+ V
Sbjct: 24 TKQSKKAK-DPNKPKRPPSAFFVFMSEFRERFKKENPSNKSVAVVG 68
>gi|223942599|gb|ACN25383.1| unknown [Zea mays]
gi|414881085|tpg|DAA58216.1| TPA: hypothetical protein ZEAMMB73_949955 [Zea mays]
Length = 118
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 30 KAVLKASR-SSNKRTKNVKSAKK-DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
K V A R SS KR K A K DP PK+PP+AFF F+E+FRK+YKQE P+VK++ +
Sbjct: 13 KTVAMAPRPSSTKRKPRPKPAGKGDPRAPKKPPTAFFYFMEDFRKIYKQEKPSVKSMQEI 72
>gi|226503761|ref|NP_001151622.1| HMG1/2-like protein [Zea mays]
gi|195648164|gb|ACG43550.1| HMG1/2-like protein [Zea mays]
gi|414881086|tpg|DAA58217.1| TPA: HMG1/2-like protein [Zea mays]
Length = 115
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 30 KAVLKASR-SSNKRTKNVKSAKK-DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
K V A R SS KR K A K DP PK+PP+AFF F+E+FRK+YKQE P+VK++ +
Sbjct: 13 KTVAMAPRPSSTKRKPRPKPAGKGDPRAPKKPPTAFFYFMEDFRKIYKQEKPSVKSMQEI 72
>gi|295913099|gb|ADG57812.1| transcription factor [Lycoris longituba]
Length = 120
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 34/40 (85%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
A KDPNKPKR PSAFFVF+E+FRK +K+++P K+V+AV
Sbjct: 3 AGKDPNKPKRAPSAFFVFMEDFRKEFKEKNPKNKSVAAVG 42
>gi|359484115|ref|XP_002267697.2| PREDICTED: high mobility group B protein 7-like [Vitis vinifera]
gi|147815109|emb|CAN61363.1| hypothetical protein VITISV_034306 [Vitis vinifera]
gi|297742725|emb|CBI35359.3| unnamed protein product [Vitis vinifera]
Length = 190
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 32/38 (84%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KDPN PKRPP+AFF+F+++FRK YK+ +P+ K VS V+
Sbjct: 94 KDPNMPKRPPTAFFLFMDDFRKEYKESNPDSKNVSVVA 131
>gi|449468356|ref|XP_004151887.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|449517965|ref|XP_004166014.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
Length = 142
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 31/40 (77%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA 83
K+ KS KKD N PKRP + FFVF+EEFRK YK++ P+ KA
Sbjct: 27 KSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKA 66
>gi|255566393|ref|XP_002524182.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223536551|gb|EEF38197.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 155
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 40/50 (80%), Gaps = 3/50 (6%)
Query: 38 SSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
+S+++ KNV KD + PKRP SAFF+F++EFRK +K+++P+ KAVSAV
Sbjct: 33 ASSRKKKNVS---KDTDAPKRPASAFFIFMDEFRKYFKEKYPDNKAVSAV 79
>gi|116785888|gb|ABK23898.1| unknown [Picea sitchensis]
Length = 220
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 37/48 (77%), Gaps = 2/48 (4%)
Query: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KRT+ K+ +DPN+PK+P +AFFVF+++FRK YK+ +P+VK + V
Sbjct: 95 KRTREKKA--RDPNQPKKPATAFFVFMDDFRKTYKETNPDVKGAAQVG 140
>gi|194700664|gb|ACF84416.1| unknown [Zea mays]
gi|194701704|gb|ACF84936.1| unknown [Zea mays]
gi|413923412|gb|AFW63344.1| hypothetical protein ZEAMMB73_127996 [Zea mays]
gi|413923413|gb|AFW63345.1| hypothetical protein ZEAMMB73_127996 [Zea mays]
Length = 139
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 29/34 (85%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KPKRPPSAFFVF+ EFR+ Y+ +HP K+V+AVS
Sbjct: 33 KPKRPPSAFFVFMSEFRQEYQAQHPGNKSVAAVS 66
>gi|162460809|ref|NP_001105483.1| high mobility group protein3 [Zea mays]
gi|1845197|emb|CAA69606.1| HMGc2 [Zea mays]
gi|223947405|gb|ACN27786.1| unknown [Zea mays]
gi|413923414|gb|AFW63346.1| HMGc2 protein [Zea mays]
Length = 138
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 29/34 (85%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KPKRPPSAFFVF+ EFR+ Y+ +HP K+V+AVS
Sbjct: 33 KPKRPPSAFFVFMSEFRQEYQAQHPGNKSVAAVS 66
>gi|950053|emb|CAA90679.1| HMG1/2-like protein [Hordeum vulgare subsp. vulgare]
Length = 160
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 31/37 (83%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
DPNKPKR PSAFFVF+ EFR+ +KQ++P K+V+AV
Sbjct: 38 DPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVG 74
>gi|729738|sp|P40621.1|HMGL_WHEAT RecName: Full=HMG1/2-like protein
gi|21803|emb|CAA77641.1| high mobility group protein [Triticum aestivum]
gi|114145392|dbj|BAF30985.1| high mobility globular protein [Triticum aestivum]
Length = 161
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 31/37 (83%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
DPNKPKR PSAFFVF+ EFR+ +KQ++P K+V+AV
Sbjct: 38 DPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVG 74
>gi|157382896|gb|ABV48883.1| high mobility group protein B1 [Physcomitrella patens]
Length = 215
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 30/38 (78%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSA 86
A KD + PKRPPSA+F+F+E FRK +K +P+VK V+A
Sbjct: 130 AAKDSDMPKRPPSAYFIFMETFRKEFKAANPDVKGVTA 167
>gi|213982973|ref|NP_001135648.1| uncharacterized protein LOC100216207 [Xenopus (Silurana)
tropicalis]
gi|156914901|gb|AAI52619.1| Hmgb2 protein [Danio rerio]
gi|197245630|gb|AAI68534.1| Unknown (protein for MGC:181066) [Xenopus (Silurana) tropicalis]
Length = 214
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/32 (71%), Positives = 25/32 (78%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKRPPSAFFVF E+R K EHPN+
Sbjct: 91 KKDPNAPKRPPSAFFVFCSEYRPTVKSEHPNL 122
>gi|52219178|ref|NP_001004674.1| high-mobility group box 2b [Danio rerio]
gi|51858850|gb|AAH81415.1| High-mobility group box 2 [Danio rerio]
gi|182889482|gb|AAI65150.1| Hmgb2 protein [Danio rerio]
Length = 214
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/32 (71%), Positives = 25/32 (78%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKRPPSAFFVF E+R K EHPN+
Sbjct: 91 KKDPNAPKRPPSAFFVFCSEYRPTVKSEHPNL 122
>gi|295913113|gb|ADG57819.1| transcription factor [Lycoris longituba]
Length = 108
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 39/56 (69%)
Query: 33 LKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
L + + K+T+ A KDPNKPKR SAFFVF+E FRK +K+++P K+V+AV
Sbjct: 17 LAVKKGAPKKTEKKVKAGKDPNKPKRAASAFFVFMEGFRKEFKEKNPKNKSVAAVG 72
>gi|388499756|gb|AFK37944.1| unknown [Lotus japonicus]
Length = 197
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 4/54 (7%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
KA R+ ++ K V+ DPN+PKRPP+AFFVFL++FRK +K+ +P K V V
Sbjct: 84 KAKRAKTEKAKKVE----DPNQPKRPPTAFFVFLDDFRKEFKEANPGSKDVKRV 133
>gi|413923117|gb|AFW63049.1| putative phototropic-resoponsive NPH3 family protein [Zea mays]
Length = 425
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/35 (62%), Positives = 29/35 (82%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
+KPKRP SAFFVF+ EFR+ Y+ +HP K+V+AVS
Sbjct: 287 SKPKRPTSAFFVFMSEFRQEYQVQHPGNKSVAAVS 321
>gi|371721822|gb|AEX55234.1| HMG transcription factor [Allium sativum]
Length = 115
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 30/32 (93%)
Query: 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
PKRPPSAFFVF+E+FRK++K+++P+ K VSAV
Sbjct: 2 PKRPPSAFFVFMEDFRKIFKEKNPDNKQVSAV 33
>gi|224097317|ref|XP_002310906.1| high mobility group family [Populus trichocarpa]
gi|118483462|gb|ABK93630.1| unknown [Populus trichocarpa]
gi|222853809|gb|EEE91356.1| high mobility group family [Populus trichocarpa]
Length = 201
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 31/38 (81%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
+DPN PKRPP+AFF+F+++FRK YK+ +P+ K V V+
Sbjct: 100 RDPNAPKRPPTAFFLFMDDFRKEYKEANPDSKDVKKVA 137
>gi|125559825|gb|EAZ05273.1| hypothetical protein OsI_27476 [Oryza sativa Indica Group]
gi|125559834|gb|EAZ05282.1| hypothetical protein OsI_27485 [Oryza sativa Indica Group]
Length = 204
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 29/34 (85%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
K KRPP+AFF+F+ +FRK YK EHP+ K+VSAV+
Sbjct: 91 KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVA 124
>gi|115474323|ref|NP_001060758.1| Os08g0101100 [Oryza sativa Japonica Group]
gi|38637289|dbj|BAD03552.1| putative HMG type nucleosome/chromatin assembly factor D [Oryza
sativa Japonica Group]
gi|113622727|dbj|BAF22672.1| Os08g0101100 [Oryza sativa Japonica Group]
gi|125601889|gb|EAZ41214.1| hypothetical protein OsJ_25719 [Oryza sativa Japonica Group]
gi|213959174|gb|ACJ54921.1| HMG type nucleosome/chromatin assembly factor [Oryza sativa
Japonica Group]
gi|215697671|dbj|BAG91665.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 203
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 29/34 (85%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
K KRPP+AFF+F+ +FRK YK EHP+ K+VSAV+
Sbjct: 91 KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVA 124
>gi|414869181|tpg|DAA47738.1| TPA: hypothetical protein ZEAMMB73_864709 [Zea mays]
Length = 198
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 33 LKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
L A+ + KR K + S K PKRPPSAFFVF+ EFR+ Y+ +HP K++ VS
Sbjct: 136 LWAAGIAGKRKKVIMSGK-----PKRPPSAFFVFMSEFRQEYQVQHPGNKSIVVVS 186
>gi|351722065|ref|NP_001236719.1| uncharacterized protein LOC100306558 [Glycine max]
gi|255628875|gb|ACU14782.1| unknown [Glycine max]
Length = 209
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAV 84
DPN PKRPP+AFFVFL++FRK +K+ +P+ K V
Sbjct: 99 DPNMPKRPPTAFFVFLDDFRKSFKEANPDSKDV 131
>gi|195619220|gb|ACG31440.1| HMG1/2-like protein [Zea mays]
Length = 139
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 27/34 (79%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KPKRPPSAFFVF+ EFR+ Y+ HP K+V+ VS
Sbjct: 32 KPKRPPSAFFVFMSEFRQQYQALHPGNKSVATVS 65
>gi|168050181|ref|XP_001777538.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671023|gb|EDQ57581.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 314
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 30/38 (78%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSA 86
A KD + PKRPPSA+F+F+E FRK +K +P+VK V+A
Sbjct: 186 AAKDSDMPKRPPSAYFIFMETFRKEFKAANPDVKGVTA 223
>gi|242053921|ref|XP_002456106.1| hypothetical protein SORBIDRAFT_03g030540 [Sorghum bicolor]
gi|241928081|gb|EES01226.1| hypothetical protein SORBIDRAFT_03g030540 [Sorghum bicolor]
Length = 109
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 38 SSNKRTKNVKSAKK-DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
SS KR K A K D PK+PP+AFF F+E+FRKVYKQE P+VK++ +
Sbjct: 6 SSPKRKSRPKPAGKGDRRAPKKPPTAFFYFMEDFRKVYKQEKPSVKSMQEIG 57
>gi|1845195|emb|CAA69605.1| HMGc1 [Zea mays]
gi|5441504|emb|CAB46753.1| HMGc1 protein [Zea mays]
gi|194690322|gb|ACF79245.1| unknown [Zea mays]
gi|194704052|gb|ACF86110.1| unknown [Zea mays]
gi|219885481|gb|ACL53115.1| unknown [Zea mays]
gi|413938184|gb|AFW72735.1| HMG-like nucleosome/chromatin assembly factor D isoform 1 [Zea
mays]
gi|413938185|gb|AFW72736.1| HMG-like nucleosome/chromatin assembly factor D isoform 2 [Zea
mays]
Length = 139
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 27/34 (79%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KPKRPPSAFFVF+ EFR+ Y+ HP K+V+ VS
Sbjct: 32 KPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVS 65
>gi|357136925|ref|XP_003570053.1| PREDICTED: HMG1/2-like protein-like [Brachypodium distachyon]
Length = 144
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 58 RPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
RPPSAFFVF+ EFR+ Y+ EHPN K+V+ VS
Sbjct: 36 RPPSAFFVFMSEFRQEYQAEHPNNKSVANVS 66
>gi|293333310|ref|NP_001168929.1| uncharacterized protein LOC100382741 [Zea mays]
gi|223973791|gb|ACN31083.1| unknown [Zea mays]
Length = 204
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 27/35 (77%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KPKRPPSAFFVF+ EFR+ Y+ HP K+V+ VS
Sbjct: 31 GKPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVS 65
>gi|15237040|ref|NP_195282.1| high mobility group B5 protein [Arabidopsis thaliana]
gi|75219649|sp|O49597.1|HMGB5_ARATH RecName: Full=High mobility group B protein 5; AltName: Full=High
mobility group protein D; Short=AtHMGdelta; Short=HMG
delta; AltName: Full=Nucleosome/chromatin assembly
factor group D 05; Short=Nucleosome/chromatin assembly
factor group D 5
gi|2832363|emb|CAA74404.1| HMG protein [Arabidopsis thaliana]
gi|3367575|emb|CAA20027.1| HMG delta protein [Arabidopsis thaliana]
gi|7270508|emb|CAB80273.1| HMG delta protein [Arabidopsis thaliana]
gi|21553743|gb|AAM62836.1| HMG delta protein [Arabidopsis thaliana]
gi|98961063|gb|ABF59015.1| At4g35570 [Arabidopsis thaliana]
gi|222423786|dbj|BAH19859.1| AT4G35570 [Arabidopsis thaliana]
gi|332661132|gb|AEE86532.1| high mobility group B5 protein [Arabidopsis thaliana]
Length = 125
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Query: 36 SRSSNKRTK----NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
SRS++ R K V KDPN+PK+PPS FFVFL++FRK + +P+ K+V V
Sbjct: 10 SRSTDDRLKVRGNKVGKKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVG 66
>gi|449433698|ref|XP_004134634.1| PREDICTED: high mobility group B protein 14-like [Cucumis sativus]
gi|449505924|ref|XP_004162605.1| PREDICTED: high mobility group B protein 14-like [Cucumis sativus]
Length = 161
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 10/69 (14%)
Query: 30 KAVLKASR-SSNKRTKNVK---------SAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
K+ KASR +++KR K +K + K D NKPK+PP+AFF FL++FRK +++++P
Sbjct: 37 KSAAKASRFNTDKRAKTIKKPNSKQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNP 96
Query: 80 NVKAVSAVS 88
+VK + V
Sbjct: 97 DVKTMRDVG 105
>gi|388495062|gb|AFK35597.1| unknown [Lotus japonicus]
Length = 162
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 14/74 (18%)
Query: 25 AAGKRKAVL--KASRSSNKRTKNVKSAKK------------DPNKPKRPPSAFFVFLEEF 70
+A RK VL K+S + + KS KK D NKPK+PP+AFF FLE+F
Sbjct: 25 SASSRKLVLRVKSSEQMKRSAQQTKSTKKPKAKQKTSKQRIDANKPKKPPTAFFYFLEDF 84
Query: 71 RKVYKQEHPNVKAV 84
RK ++ ++P+VK +
Sbjct: 85 RKEFQVQNPDVKTM 98
>gi|346472777|gb|AEO36233.1| hypothetical protein [Amblyomma maculatum]
Length = 208
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 31/35 (88%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
NKPKR P+AFF+F+++FRK YK+ HP+ K+V++V+
Sbjct: 102 NKPKRAPTAFFLFMDDFRKEYKELHPDNKSVASVA 136
>gi|297597325|ref|NP_001043799.2| Os01g0666200 [Oryza sativa Japonica Group]
gi|56202161|dbj|BAD73639.1| HMG protein-like [Oryza sativa Japonica Group]
gi|125527174|gb|EAY75288.1| hypothetical protein OsI_03176 [Oryza sativa Indica Group]
gi|215693961|dbj|BAG89148.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255673529|dbj|BAF05713.2| Os01g0666200 [Oryza sativa Japonica Group]
Length = 133
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 30/36 (83%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
D +PK+PP+AFF F+E+FRK YK+E+P+VK++ V
Sbjct: 45 DRRRPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEV 80
>gi|255557355|ref|XP_002519708.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223541125|gb|EEF42681.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 198
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 39/55 (70%)
Query: 33 LKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
+K R+ KR + AK D KPK+PP+AFF FLE+FRK +++++P+VK++ +
Sbjct: 87 VKDKRAKPKRISKRQIAKLDSKKPKKPPTAFFYFLEDFRKDFQKQNPDVKSMREI 141
>gi|125527178|gb|EAY75292.1| hypothetical protein OsI_03182 [Oryza sativa Indica Group]
Length = 133
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 30/36 (83%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
D +PK+PP+AFF F+E+FRK YK+E+P+VK++ V
Sbjct: 45 DRRRPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEV 80
>gi|356536465|ref|XP_003536758.1| PREDICTED: high mobility group B protein 7-like [Glycine max]
Length = 200
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
DPN PKRPP+AFF FL++FRK +K+ +P+ K V V
Sbjct: 99 DPNMPKRPPTAFFAFLDDFRKSFKEANPDSKDVKRV 134
>gi|162461550|ref|NP_001105075.1| high mobility group box protein2 [Zea mays]
gi|17017394|gb|AAL33651.1|AF440222_1 HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 139
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 26/34 (76%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KPKRPPSAFF F+ EFR+ Y+ HP K+V+ VS
Sbjct: 32 KPKRPPSAFFAFMSEFRQEYQALHPGNKSVATVS 65
>gi|221219844|gb|ACM08583.1| High mobility group protein B2 [Salmo salar]
Length = 211
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/32 (71%), Positives = 23/32 (71%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKRPPSAFFVF EFR KQE P
Sbjct: 91 KKDPNAPKRPPSAFFVFSAEFRPTVKQEFPGC 122
>gi|441669023|ref|XP_004092092.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
Length = 204
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 15 NEVVKPVEDRAAGKRKAVLKASRSSNKR-------TKNVKSAKKDPNKPKRPPSAFFVFL 67
+E+ K + + GK +A+ KA ++ +R +K K KDPN PKRPP AFF+F
Sbjct: 46 SEMWKTIFAKEKGKFEAMAKADKAHYEREMKTYIPSKGEKKKFKDPNAPKRPPLAFFLFC 105
Query: 68 EEFRKVYKQEHPNV 81
E+R K EHP +
Sbjct: 106 SEYRPKIKGEHPGL 119
>gi|225463454|ref|XP_002275908.1| PREDICTED: high mobility group B protein 14 [Vitis vinifera]
gi|297740668|emb|CBI30850.3| unnamed protein product [Vitis vinifera]
Length = 175
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 37 RSSNK---RTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
RS NK +TK +S + D KPK+PP+AFF FLE+FRK +++++P+VK++ +
Sbjct: 67 RSGNKAKAKTKK-RSQRVDSKKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDI 119
>gi|49258306|pdb|1J3C|A Chain A, Solution Structure Of The C-Terminal Domain Of The Hmgb2
Length = 79
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 24/32 (75%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 3 KKDPNAPKRPPSAFFLFCSEYRPKIKSEHPGL 34
>gi|356494961|ref|XP_003516349.1| PREDICTED: high mobility group B protein 7-like [Glycine max]
Length = 178
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK 82
DPN PKRPP+ FFVFL++FRK +K+ +P+ K
Sbjct: 99 DPNMPKRPPTTFFVFLDDFRKSFKEANPDSK 129
>gi|388501678|gb|AFK38905.1| unknown [Medicago truncatula]
Length = 152
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
SR K + K D KPK+PP+AFF FLE+FRK +K ++P+VK++ +
Sbjct: 44 SRDITKAVQKKNKQKIDAKKPKKPPTAFFYFLEDFRKEFKDQNPDVKSMRDIG 96
>gi|344252855|gb|EGW08959.1| TRAF family member-associated NF-kappa-B activator [Cricetulus
griseus]
Length = 427
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R +K EHP +
Sbjct: 303 KDPNAPKRPPSAFFLFCSEYRPKFKGEHPGL 333
>gi|225704132|gb|ACO07912.1| High mobility group protein B1 [Oncorhynchus mykiss]
Length = 194
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F +FR K EHP +
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKIKSEHPGL 119
>gi|395850201|ref|XP_003797684.1| PREDICTED: high mobility group protein B1 [Otolemur garnettii]
Length = 289
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|224043266|ref|XP_002194652.1| PREDICTED: high mobility group protein B1 [Taeniopygia guttata]
Length = 215
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F EFR K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL 120
>gi|5815432|gb|AAD52670.1|AF178849_1 high mobility group protein HMG1 [Gallus gallus]
Length = 214
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F EFR K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL 120
>gi|380083124|gb|AFD33645.1| high mobility group box 1, partial [Gallus gallus]
Length = 185
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F EFR K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL 120
>gi|45382473|ref|NP_990233.1| high mobility group protein B1 [Gallus gallus]
gi|326914268|ref|XP_003203448.1| PREDICTED: high mobility group protein B1-like [Meleagris
gallopavo]
gi|4140289|emb|CAA76978.1| high mobility group 1 protein [Gallus gallus]
gi|60098903|emb|CAH65282.1| hypothetical protein RCJMB04_15a21 [Gallus gallus]
Length = 215
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F EFR K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL 120
>gi|225703866|gb|ACO07779.1| High mobility group protein B1 [Oncorhynchus mykiss]
Length = 194
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F +FR K EHP +
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKIKSEHPGL 119
>gi|221221922|gb|ACM09622.1| High mobility group protein B1 [Salmo salar]
Length = 196
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F +FR K EHP +
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKIKSEHPGL 119
>gi|221219434|gb|ACM08378.1| High mobility group protein B1 [Salmo salar]
Length = 196
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F +FR K EHP +
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKIKSEHPGL 119
>gi|432953329|ref|XP_004085352.1| PREDICTED: high mobility group protein B2-like isoform 1 [Oryzias
latipes]
Length = 200
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+KDPN PKRPPSAFFVF E+R KQ++P +
Sbjct: 91 RKDPNAPKRPPSAFFVFCSEYRPSVKQQYPGL 122
>gi|410930542|ref|XP_003978657.1| PREDICTED: high mobility group protein B2-like [Takifugu rubripes]
Length = 201
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+KDPN PKRPPSAFFVF E+R KQ++P +
Sbjct: 91 RKDPNAPKRPPSAFFVFCSEYRPSVKQQYPGL 122
>gi|300677966|gb|ADK27290.1| high-mobility-group B1a [Gekko japonicus]
Length = 215
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F EFR K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL 120
>gi|449269673|gb|EMC80424.1| High mobility group protein B1 [Columba livia]
Length = 209
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F EFR K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL 120
>gi|348543650|ref|XP_003459296.1| PREDICTED: high mobility group protein B2-like isoform 1
[Oreochromis niloticus]
Length = 200
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+KDPN PKRPPSAFFVF E+R KQ++P +
Sbjct: 91 RKDPNAPKRPPSAFFVFCSEYRPSVKQQYPGL 122
>gi|410932269|ref|XP_003979516.1| PREDICTED: high mobility group-T protein-like [Takifugu rubripes]
gi|410933007|ref|XP_003979884.1| PREDICTED: high mobility group-T protein-like [Takifugu rubripes]
Length = 209
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 22/30 (73%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPSAFF+F EFR K EHP +
Sbjct: 95 DPNAPKRPPSAFFIFCSEFRPKVKGEHPGL 124
>gi|444728196|gb|ELW68660.1| High mobility group protein B1 [Tupaia chinensis]
Length = 221
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 105 KDPNAPKRPPSAFFLFCSEYRSKIKGEHPGL 135
>gi|225708606|gb|ACO10149.1| High mobility group protein B2 [Osmerus mordax]
Length = 216
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 23/32 (71%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKRPPSAFFVF + R K EHP +
Sbjct: 90 KKDPNAPKRPPSAFFVFCSDHRARIKGEHPGI 121
>gi|392337480|ref|XP_003753270.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392343959|ref|XP_003748829.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 215
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|444728198|gb|ELW68662.1| High mobility group protein B1 [Tupaia chinensis]
Length = 132
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 16 KDPNAPKRPPSAFFLFCSEYRSKIKGEHPGL 46
>gi|444731734|gb|ELW72082.1| High mobility group protein B1 [Tupaia chinensis]
Length = 221
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 84 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 114
>gi|18420676|ref|NP_568431.1| high-mobility group B6 protein [Arabidopsis thaliana]
gi|75245985|sp|Q8LDF9.1|HMGB7_ARATH RecName: Full=High mobility group B protein 7; AltName:
Full=Nucleosome/chromatin assembly factor group D 07;
Short=Nucleosome/chromatin assembly factor group D 7
gi|21554154|gb|AAM63233.1| unknown [Arabidopsis thaliana]
gi|26452394|dbj|BAC43282.1| unknown protein [Arabidopsis thaliana]
gi|332005781|gb|AED93164.1| high-mobility group B6 protein [Arabidopsis thaliana]
Length = 241
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
K+T + K + NKPKRP +AFF+F+ +FRK +K EH A A I
Sbjct: 100 KKTNDEKKSSSTSNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKI 148
>gi|403300479|ref|XP_003940964.1| PREDICTED: high mobility group protein B1-like [Saimiri boliviensis
boliviensis]
Length = 215
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|444721192|gb|ELW61941.1| High mobility group protein B1 [Tupaia chinensis]
Length = 300
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|356524949|ref|XP_003531090.1| PREDICTED: high mobility group B protein 14-like [Glycine max]
Length = 148
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 30/37 (81%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
D KPK+PP+AFF FLE+FRK +++++P+VK++ +
Sbjct: 56 DAMKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIG 92
>gi|395850653|ref|XP_003797893.1| PREDICTED: uncharacterized protein LOC100942737 [Otolemur
garnettii]
Length = 633
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF F E+R K EHP +
Sbjct: 513 KDPNAPKRPPSAFFWFCSEYRPKIKGEHPGL 543
>gi|444721179|gb|ELW61931.1| High mobility group protein B1 [Tupaia chinensis]
Length = 212
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|9759080|dbj|BAB09558.1| unnamed protein product [Arabidopsis thaliana]
Length = 226
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
K+T + K + NKPKRP +AFF+F+ +FRK +K EH A A I
Sbjct: 85 KKTNDEKKSSSTSNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKI 133
>gi|193787044|dbj|BAG51867.1| unnamed protein product [Homo sapiens]
Length = 176
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 51 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 81
>gi|297826905|ref|XP_002881335.1| high mobility group family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297327174|gb|EFH57594.1| high mobility group family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 152
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 27/32 (84%)
Query: 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
PK+PP+AFF FLE+FRK Y++E+P VK++ V
Sbjct: 64 PKKPPTAFFFFLEDFRKQYQEENPEVKSMREV 95
>gi|148234528|ref|NP_001080836.1| high mobility group box 1 [Xenopus laevis]
gi|32450384|gb|AAH54148.1| Hmgb1-prov protein [Xenopus laevis]
Length = 211
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 22/30 (73%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
KDPN PKRPPSAFF+F EFR K EHP
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHPG 119
>gi|148673204|gb|EDL05151.1| mCG5336 [Mus musculus]
Length = 216
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|148682766|gb|EDL14713.1| mCG116825 [Mus musculus]
Length = 162
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 41 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 71
>gi|109469394|ref|XP_001076232.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392338825|ref|XP_003753645.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 214
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|426244704|ref|XP_004016160.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 203
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|402865885|ref|XP_003897133.1| PREDICTED: high mobility group protein B1-like [Papio anubis]
Length = 221
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 96 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 126
>gi|148709727|gb|EDL41673.1| mCG9102 [Mus musculus]
Length = 215
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|3342575|gb|AAC27652.1| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|354468511|ref|XP_003496696.1| PREDICTED: high mobility group protein B1-like [Cricetulus griseus]
gi|344237248|gb|EGV93351.1| High mobility group protein B1 [Cricetulus griseus]
Length = 220
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|109098276|ref|XP_001102554.1| PREDICTED: high mobility group protein B1-like [Macaca mulatta]
Length = 215
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|26350077|dbj|BAC38678.1| unnamed protein product [Mus musculus]
Length = 181
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|444732714|gb|ELW72989.1| Enkurin [Tupaia chinensis]
Length = 362
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|301757910|ref|XP_002914802.1| PREDICTED: high mobility group protein B1-like [Ailuropoda
melanoleuca]
Length = 215
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|148673911|gb|EDL05858.1| mCG144566 [Mus musculus]
Length = 240
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 115 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 145
>gi|221045048|dbj|BAH14201.1| unnamed protein product [Homo sapiens]
Length = 174
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|432102789|gb|ELK30264.1| High mobility group protein B1 [Myotis davidii]
Length = 245
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|426232480|ref|XP_004010250.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 201
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|426236473|ref|XP_004012193.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 201
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|426236471|ref|XP_004012192.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 213
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|83014391|ref|XP_918585.1| PREDICTED: high mobility group protein B1-like [Mus musculus]
Length = 213
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|56788496|gb|AAW29969.1| unknown [Sus scrofa]
gi|56792880|gb|AAW30632.1| unknown [Sus scrofa]
Length = 193
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|417397281|gb|JAA45674.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 216
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 91 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 121
>gi|380793129|gb|AFE68440.1| high mobility group protein B1, partial [Macaca mulatta]
Length = 195
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|380793127|gb|AFE68439.1| high mobility group protein B1, partial [Macaca mulatta]
Length = 195
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|380792505|gb|AFE68128.1| high mobility group protein B1, partial [Macaca mulatta]
Length = 183
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|119628863|gb|EAX08458.1| high-mobility group box 1, isoform CRA_b [Homo sapiens]
Length = 206
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|26341410|dbj|BAC34367.1| unnamed protein product [Mus musculus]
Length = 178
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|49258307|pdb|1J3D|A Chain A, Solution Structure Of The C-Terminal Domain Of The Hmgb2
Length = 78
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 23/32 (71%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKRPPSAFF+F E R K EHP +
Sbjct: 2 KKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 33
>gi|146218567|gb|AAI40014.1| High-mobility group box 1 [synthetic construct]
gi|146218571|gb|AAI40019.1| High-mobility group box 1 [synthetic construct]
gi|146327050|gb|AAI41845.1| High-mobility group box 1 [Homo sapiens]
Length = 215
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|126327421|ref|XP_001367294.1| PREDICTED: high mobility group protein B1-like isoform 2
[Monodelphis domestica]
Length = 216
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|45361297|ref|NP_989226.1| high mobility group box 1 [Xenopus (Silurana) tropicalis]
gi|38969943|gb|AAH63332.1| high-mobility group box 1 [Xenopus (Silurana) tropicalis]
gi|89267209|emb|CAJ81415.1| high-mobility group box 1 [Xenopus (Silurana) tropicalis]
gi|89272910|emb|CAJ82928.1| high-mobility group box 1 [Xenopus (Silurana) tropicalis]
Length = 211
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 22/30 (73%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
KDPN PKRPPSAFF+F EFR K EHP
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHPG 119
>gi|297812491|ref|XP_002874129.1| hypothetical protein ARALYDRAFT_910356 [Arabidopsis lyrata subsp.
lyrata]
gi|297319966|gb|EFH50388.1| hypothetical protein ARALYDRAFT_910356 [Arabidopsis lyrata subsp.
lyrata]
Length = 193
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
K+T + K + NKPKRP +AFF+F+ +FRK +K EH A A I
Sbjct: 100 KKTNDEKKSSSTSNKPKRPLTAFFIFMNDFRKTFKTEHNGSLAKDAAKI 148
>gi|30584163|gb|AAP36330.1| Homo sapiens high-mobility group box 1 [synthetic construct]
gi|54697182|gb|AAV38963.1| high-mobility group box 1 [synthetic construct]
gi|54697184|gb|AAV38964.1| high-mobility group box 1 [synthetic construct]
gi|61367269|gb|AAX42974.1| high-mobility group box 1 [synthetic construct]
gi|61367275|gb|AAX42975.1| high-mobility group box 1 [synthetic construct]
gi|61371572|gb|AAX43692.1| high-mobility group box 1 [synthetic construct]
Length = 216
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|149691739|ref|XP_001488130.1| PREDICTED: high mobility group protein B1-like [Equus caballus]
Length = 212
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|334323271|ref|XP_003340370.1| PREDICTED: high mobility group protein B1-like [Monodelphis
domestica]
Length = 216
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|123368|sp|P07156.1|HMGB1_CRIGR RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|49483|emb|CAA68441.1| high mobility group protein [Cricetulus griseus]
Length = 180
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 55 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 85
>gi|431920962|gb|ELK18731.1| High mobility group protein B1 [Pteropus alecto]
Length = 215
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|55639639|ref|XP_509611.1| PREDICTED: high mobility group protein B1 isoform 15 [Pan
troglodytes]
gi|114649261|ref|XP_001140156.1| PREDICTED: high mobility group protein B1 isoform 3 [Pan
troglodytes]
gi|114649265|ref|XP_001140328.1| PREDICTED: high mobility group protein B1 isoform 5 [Pan
troglodytes]
gi|114649269|ref|XP_001140491.1| PREDICTED: high mobility group protein B1 isoform 7 [Pan
troglodytes]
gi|332841128|ref|XP_003314147.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|332841133|ref|XP_003314149.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|397513185|ref|XP_003826902.1| PREDICTED: high mobility group protein B1 isoform 1 [Pan paniscus]
gi|397513187|ref|XP_003826903.1| PREDICTED: high mobility group protein B1 isoform 2 [Pan paniscus]
gi|397513189|ref|XP_003826904.1| PREDICTED: high mobility group protein B1 isoform 3 [Pan paniscus]
gi|397513191|ref|XP_003826905.1| PREDICTED: high mobility group protein B1 isoform 4 [Pan paniscus]
gi|397513193|ref|XP_003826906.1| PREDICTED: high mobility group protein B1 isoform 5 [Pan paniscus]
gi|397513195|ref|XP_003826907.1| PREDICTED: high mobility group protein B1 isoform 6 [Pan paniscus]
gi|397513197|ref|XP_003826908.1| PREDICTED: high mobility group protein B1 isoform 7 [Pan paniscus]
gi|410047671|ref|XP_003952424.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047673|ref|XP_003952425.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047675|ref|XP_003952426.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047677|ref|XP_003952427.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047679|ref|XP_003952428.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047682|ref|XP_003952429.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047686|ref|XP_003952430.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047688|ref|XP_003952431.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
Length = 215
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|48145843|emb|CAG33144.1| HMGB1 [Homo sapiens]
Length = 215
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|620098|emb|CAA56631.1| high mobility group protein [Mus musculus]
gi|71681313|gb|AAI00313.1| High mobility group box 1 [Mus musculus]
Length = 215
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|4504425|ref|NP_002119.1| high mobility group protein B1 [Homo sapiens]
gi|50950133|ref|NP_001002937.1| high mobility group protein B1 [Canis lupus familiaris]
gi|126352708|ref|NP_001075304.1| high mobility group protein B1 [Equus caballus]
gi|281182655|ref|NP_001162380.1| high mobility group protein B1 [Papio anubis]
gi|284005385|ref|NP_001164752.1| high mobility group protein B1 [Oryctolagus cuniculus]
gi|388453289|ref|NP_001252735.1| high mobility group protein B1 [Macaca mulatta]
gi|291397530|ref|XP_002715999.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
gi|291399645|ref|XP_002716268.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
gi|296203653|ref|XP_002748994.1| PREDICTED: high mobility group protein B1 isoform 2 [Callithrix
jacchus]
gi|297714815|ref|XP_002833818.1| PREDICTED: high mobility group protein B1-like [Pongo abelii]
gi|332242218|ref|XP_003270282.1| PREDICTED: high mobility group protein B1-like isoform 1 [Nomascus
leucogenys]
gi|332242222|ref|XP_003270284.1| PREDICTED: high mobility group protein B1-like isoform 3 [Nomascus
leucogenys]
gi|332242226|ref|XP_003270286.1| PREDICTED: high mobility group protein B1-like isoform 5 [Nomascus
leucogenys]
gi|332242228|ref|XP_003270287.1| PREDICTED: high mobility group protein B1-like isoform 6 [Nomascus
leucogenys]
gi|332242230|ref|XP_003270288.1| PREDICTED: high mobility group protein B1-like isoform 7 [Nomascus
leucogenys]
gi|332242232|ref|XP_003270289.1| PREDICTED: high mobility group protein B1-like isoform 8 [Nomascus
leucogenys]
gi|344284506|ref|XP_003414007.1| PREDICTED: high mobility group protein B1-like [Loxodonta africana]
gi|348583405|ref|XP_003477463.1| PREDICTED: high mobility group protein B1-like [Cavia porcellus]
gi|426375079|ref|XP_004054375.1| PREDICTED: high mobility group protein B1-like isoform 1 [Gorilla
gorilla gorilla]
gi|426375081|ref|XP_004054376.1| PREDICTED: high mobility group protein B1-like isoform 2 [Gorilla
gorilla gorilla]
gi|426375083|ref|XP_004054377.1| PREDICTED: high mobility group protein B1-like isoform 3 [Gorilla
gorilla gorilla]
gi|426375085|ref|XP_004054378.1| PREDICTED: high mobility group protein B1-like isoform 4 [Gorilla
gorilla gorilla]
gi|426375087|ref|XP_004054379.1| PREDICTED: high mobility group protein B1-like isoform 5 [Gorilla
gorilla gorilla]
gi|426375089|ref|XP_004054380.1| PREDICTED: high mobility group protein B1-like isoform 6 [Gorilla
gorilla gorilla]
gi|426375091|ref|XP_004054381.1| PREDICTED: high mobility group protein B1-like isoform 7 [Gorilla
gorilla gorilla]
gi|426375093|ref|XP_004054382.1| PREDICTED: high mobility group protein B1-like isoform 8 [Gorilla
gorilla gorilla]
gi|441624073|ref|XP_004088962.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624077|ref|XP_004088963.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624084|ref|XP_004088964.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624090|ref|XP_004088965.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624094|ref|XP_004088966.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|123369|sp|P09429.3|HMGB1_HUMAN RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|61213476|sp|Q6YKA4.3|HMGB1_CANFA RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|75076928|sp|Q4R844.3|HMGB1_MACFA RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|119370722|sp|Q08IE6.3|HMGB1_HORSE RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|189028296|sp|B0CM99.1|HMGB1_CALJA RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|189028297|sp|B1MTB0.1|HMGB1_CALMO RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|189028298|sp|A9RA84.1|HMGB1_PAPAN RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|32327|emb|CAA31110.1| unnamed protein product [Homo sapiens]
gi|1435197|gb|AAB08987.1| non-histone chromatin protein HMG1 [Homo sapiens]
gi|13097234|gb|AAH03378.1| High-mobility group box 1 [Homo sapiens]
gi|21410205|gb|AAH30981.1| High-mobility group box 1 [Homo sapiens]
gi|30582719|gb|AAP35586.1| high-mobility group box 1 [Homo sapiens]
gi|37380997|gb|AAQ91389.1| high mobility group protein 1 [Homo sapiens]
gi|37548602|gb|AAN11296.1| high mobility group protein B1 [Canis lupus familiaris]
gi|37722533|gb|AAN11319.1| high mobility group B1 protein [Canis lupus familiaris]
gi|44890726|gb|AAH66889.1| High-mobility group box 1 [Homo sapiens]
gi|45709178|gb|AAH67732.1| High-mobility group box 1 [Homo sapiens]
gi|51476884|emb|CAH18408.1| hypothetical protein [Homo sapiens]
gi|54697178|gb|AAV38961.1| high-mobility group box 1 [Homo sapiens]
gi|60654989|gb|AAX32058.1| high mobility group box 1 [synthetic construct]
gi|61357252|gb|AAX41359.1| high-mobility group box 1 [synthetic construct]
gi|67968740|dbj|BAE00728.1| unnamed protein product [Macaca fascicularis]
gi|115354285|dbj|BAF33339.1| high-mobility group box 1 [Equus caballus]
gi|119628862|gb|EAX08457.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628864|gb|EAX08459.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628865|gb|EAX08460.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628866|gb|EAX08461.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628867|gb|EAX08462.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|121073803|gb|ABM47301.1| high mobility group box 1 protein [Homo sapiens]
gi|152112978|gb|ABS29271.1| high-mobility group box 1 [Homo sapiens]
gi|158256420|dbj|BAF84183.1| unnamed protein product [Homo sapiens]
gi|162415900|gb|ABX89266.1| high-mobility group box 1 (predicted) [Papio anubis]
gi|165934066|gb|ABY74560.1| high-mobility group box 1 (predicted) [Callithrix jacchus]
gi|169402702|gb|ACA53510.1| high-mobility group box 1 (predicted) [Callicebus moloch]
gi|183396417|gb|ACC62098.1| high-mobility group box 1 (predicted) [Rhinolophus ferrumequinum]
gi|193783763|dbj|BAG53745.1| unnamed protein product [Homo sapiens]
gi|196050399|gb|ACG64310.1| high-mobility group box 1 (predicted) [Otolemur garnettii]
gi|216397586|gb|ACJ72830.1| high-mobility group box 1 (predicted) [Oryctolagus cuniculus]
gi|261858262|dbj|BAI45653.1| high-mobility group box 1 [synthetic construct]
gi|335775462|gb|AEH58580.1| high mobility group protein B1-like protein [Equus caballus]
gi|351700460|gb|EHB03379.1| High mobility group protein B1 [Heterocephalus glaber]
gi|387542840|gb|AFJ72047.1| high mobility group protein B1 [Macaca mulatta]
Length = 215
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|402854944|ref|XP_003892110.1| PREDICTED: high mobility group protein B1-like isoform 1 [Papio
anubis]
gi|402854946|ref|XP_003892111.1| PREDICTED: high mobility group protein B1-like isoform 2 [Papio
anubis]
Length = 214
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|397495503|ref|XP_003818592.1| PREDICTED: high mobility group protein B1-like [Pan paniscus]
Length = 209
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|348551709|ref|XP_003461672.1| PREDICTED: high mobility group protein B1-like [Cavia porcellus]
Length = 214
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|332863449|ref|XP_001169802.2| PREDICTED: high mobility group protein B1-like, partial [Pan
troglodytes]
Length = 174
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|109510563|ref|XP_001059688.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392343404|ref|XP_003754879.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 213
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|62087576|dbj|BAD92235.1| high-mobility group box 1 variant [Homo sapiens]
Length = 176
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 92 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 122
>gi|41386729|ref|NP_788785.1| high mobility group protein B1 [Bos taurus]
gi|410947173|ref|XP_003980327.1| PREDICTED: high mobility group protein B1 [Felis catus]
gi|123367|sp|P10103.3|HMGB1_BOVIN RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|417|emb|CAA31284.1| unnamed protein product [Bos taurus]
gi|73586656|gb|AAI02930.1| HMGB1 protein [Bos taurus]
gi|146231904|gb|ABQ13027.1| high-mobility group box 1 [Bos taurus]
gi|296481787|tpg|DAA23902.1| TPA: high mobility group protein B1 [Bos taurus]
Length = 215
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|6754208|ref|NP_034569.1| high mobility group protein B1 [Mus musculus]
gi|6981026|ref|NP_037095.1| high mobility group protein B1 [Rattus norvegicus]
gi|407262920|ref|XP_003945388.1| PREDICTED: high mobility group protein B1-like [Mus musculus]
gi|52783618|sp|P63159.2|HMGB1_RAT RecName: Full=High mobility group protein B1; AltName:
Full=Amphoterin; AltName: Full=Heparin-binding protein
p30; AltName: Full=High mobility group protein 1;
Short=HMG-1
gi|52783747|sp|P63158.2|HMGB1_MOUSE RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|9082303|gb|AAF82799.1|AF275734_1 amphoterin [Rattus norvegicus]
gi|53382|emb|CAA78042.1| non-histone chromosomal high-mobility group 1 protein [Mus
musculus]
gi|56365|emb|CAA68526.1| unnamed protein product [Rattus norvegicus]
gi|202885|gb|AAA40729.1| Amphoterin [Rattus norvegicus]
gi|208488|gb|AAA73006.1| high mobility group 1 protein [synthetic construct]
gi|437102|gb|AAA20508.1| HMG-1 [Mus musculus]
gi|13879238|gb|AAH06586.1| High mobility group box 1 [Mus musculus]
gi|14250281|gb|AAH08565.1| High mobility group box 1 [Mus musculus]
gi|26332344|dbj|BAC29902.1| unnamed protein product [Mus musculus]
gi|26351305|dbj|BAC39289.1| unnamed protein product [Mus musculus]
gi|38512146|gb|AAH61779.1| High mobility group box 1 [Rattus norvegicus]
gi|51859468|gb|AAH81839.1| High mobility group box 1 [Rattus norvegicus]
gi|52789475|gb|AAH83067.1| High mobility group box 1 [Mus musculus]
gi|54648288|gb|AAH85090.1| High mobility group box 1 [Mus musculus]
gi|56788766|gb|AAH88402.1| High mobility group box 1 [Rattus norvegicus]
gi|61403558|gb|AAH91741.1| High mobility group box 1 [Mus musculus]
gi|62739258|gb|AAH94030.1| High mobility group box 1 [Mus musculus]
gi|74186113|dbj|BAE34226.1| unnamed protein product [Mus musculus]
gi|84040262|gb|AAI10668.1| Hmgb1 protein [Mus musculus]
gi|84105496|gb|AAI11469.1| High mobility group box 1 [Mus musculus]
gi|149034811|gb|EDL89531.1| rCG42800, isoform CRA_a [Rattus norvegicus]
gi|149034812|gb|EDL89532.1| rCG42800, isoform CRA_a [Rattus norvegicus]
gi|149034813|gb|EDL89533.1| rCG42800, isoform CRA_a [Rattus norvegicus]
gi|195539712|gb|AAI68143.1| High mobility group box 1 [Rattus norvegicus]
Length = 215
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|968888|dbj|BAA09924.1| HMG-1 [Homo sapiens]
Length = 215
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|5764678|gb|AAC27650.2| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|5764680|gb|AAC27653.2| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|74181373|dbj|BAE29962.1| unnamed protein product [Mus musculus]
Length = 215
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|387016392|gb|AFJ50315.1| High mobility group protein B1 [Crotalus adamanteus]
Length = 215
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|190195542|gb|ACE73639.1| high-mobility group box 1 (predicted) [Sorex araneus]
Length = 215
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|51592117|ref|NP_001004034.1| high mobility group protein B1 [Sus scrofa]
gi|123371|sp|P12682.3|HMGB1_PIG RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|164490|gb|AAA31050.1| non-histone protein HMG1 [Sus scrofa]
Length = 215
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|410057418|ref|XP_003954213.1| PREDICTED: high mobility group protein B1-like [Pan troglodytes]
Length = 210
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|3342573|gb|AAC27651.1| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|296479353|tpg|DAA21468.1| TPA: high-mobility group box 1-like [Bos taurus]
Length = 215
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|390463605|ref|XP_003733066.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 214
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|440900657|gb|ELR51738.1| High mobility group protein B1 [Bos grunniens mutus]
Length = 224
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|444707034|gb|ELW48343.1| High mobility group protein B1 [Tupaia chinensis]
Length = 203
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 78 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 108
>gi|395821450|ref|XP_003784053.1| PREDICTED: high mobility group protein B1-like [Otolemur garnettii]
Length = 221
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNVPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|149635755|ref|XP_001508702.1| PREDICTED: high mobility group protein B1-like [Ornithorhynchus
anatinus]
Length = 215
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|149030113|gb|EDL85190.1| rCG63106 [Rattus norvegicus]
Length = 201
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 78 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 108
>gi|229367676|gb|ACQ58818.1| High mobility group protein B1 [Anoplopoma fimbria]
Length = 197
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F +FR K EHP +
Sbjct: 89 KDPNAPKRPPSAFFLFCGDFRPKVKSEHPGL 119
>gi|157820087|ref|NP_001102843.1| high mobility group box 1 like [Rattus norvegicus]
gi|149043247|gb|EDL96779.1| rCG50935 [Rattus norvegicus]
Length = 214
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|444729709|gb|ELW70116.1| High mobility group protein B1 [Tupaia chinensis]
Length = 215
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|357508231|ref|XP_003624404.1| High mobility group protein [Medicago truncatula]
gi|355499419|gb|AES80622.1| High mobility group protein [Medicago truncatula]
Length = 144
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 31/41 (75%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
K AK DP+KPKRP S FF+F+ +FR +++E+P+ K VS V
Sbjct: 4 KKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVV 44
>gi|291399740|ref|XP_002716281.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
Length = 243
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|357135842|ref|XP_003569517.1| PREDICTED: high mobility group B protein 14-like [Brachypodium
distachyon]
Length = 127
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 29/37 (78%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
DP +PK+PP+AFF F+E+FR +K E+P+VK++ +
Sbjct: 39 DPRRPKKPPTAFFYFMEDFRDKFKAENPSVKSMQDIG 75
>gi|351698285|gb|EHB01204.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 215
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|229365968|gb|ACQ57964.1| High mobility group protein B1 [Anoplopoma fimbria]
Length = 197
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F +FR K EHP +
Sbjct: 89 KDPNAPKRPPSAFFLFCGDFRPKVKSEHPGL 119
>gi|600761|gb|AAA57042.1| high mobility group 1 protein [Mus musculus]
Length = 215
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|395520861|ref|XP_003764541.1| PREDICTED: high mobility group protein B1 [Sarcophilus harrisii]
Length = 230
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 104 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 134
>gi|297812105|ref|XP_002873936.1| hypothetical protein ARALYDRAFT_488801 [Arabidopsis lyrata subsp.
lyrata]
gi|297319773|gb|EFH50195.1| hypothetical protein ARALYDRAFT_488801 [Arabidopsis lyrata subsp.
lyrata]
Length = 224
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
K+T + K + NKPKRP +AFF+F+ +FRK +K EH A A I
Sbjct: 97 KKTNDEKKSSSTSNKPKRPLTAFFIFMNDFRKTFKTEHNGSFAKDAAKI 145
>gi|148680486|gb|EDL12433.1| mCG1219 [Mus musculus]
Length = 215
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|148703464|gb|EDL35411.1| mCG50005 [Mus musculus]
Length = 206
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPSAFF+F E+R K EHP +
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|47190944|emb|CAF93003.1| unnamed protein product [Tetraodon nigroviridis]
Length = 204
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 24/32 (75%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+KDPN PKRPPSAFFVF E+R KQ+ P +
Sbjct: 94 RKDPNAPKRPPSAFFVFCSEYRPSVKQQFPGL 125
>gi|281350894|gb|EFB26478.1| hypothetical protein PANDA_002732 [Ailuropoda melanoleuca]
Length = 157
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|167744990|pdb|2YRQ|A Chain A, Solution Structure Of The Tandem Hmg Box Domain From Human
High Mobility Group Protein B1
Length = 173
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 97 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 127
>gi|90076282|dbj|BAE87821.1| unnamed protein product [Macaca fascicularis]
Length = 123
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|159162414|pdb|1HME|A Chain A, Structure Of The Hmg Box Motif In The B-Domain Of Hmg1
gi|159162415|pdb|1HMF|A Chain A, Structure Of The Hmg Box Motif In The B-Domain Of Hmg1
Length = 77
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 2 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 32
>gi|355565174|gb|EHH21663.1| hypothetical protein EGK_04785, partial [Macaca mulatta]
Length = 201
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|392352276|ref|XP_003751165.1| PREDICTED: high mobility group protein B1 [Rattus norvegicus]
Length = 187
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|118344422|ref|NP_001072036.1| transcription factor protein [Ciona intestinalis]
gi|70570508|dbj|BAE06614.1| transcription factor protein [Ciona intestinalis]
Length = 447
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 3/50 (6%)
Query: 28 KRKAVLKASRSSNKRTKNVKSAKK---DPNKPKRPPSAFFVFLEEFRKVY 74
+++ L+ SR +R + K+ +K DPN+PKRPPSA+F+FL +FRK Y
Sbjct: 236 EKEPFLELSRRDRERWQKDKALEKKPRDPNRPKRPPSAYFLFLADFRKNY 285
>gi|118343940|ref|NP_001071792.1| transcription factor protein [Ciona intestinalis]
gi|70570753|dbj|BAE06615.1| transcription factor protein [Ciona intestinalis]
Length = 310
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 3/50 (6%)
Query: 28 KRKAVLKASRSSNKRTKNVKSAKK---DPNKPKRPPSAFFVFLEEFRKVY 74
+++ L+ SR +R + K+ +K DPN+PKRPPSA+F+FL +FRK Y
Sbjct: 99 EKEPFLELSRRDRERWQKDKALEKKPRDPNRPKRPPSAYFLFLADFRKNY 148
>gi|444732719|gb|ELW72994.1| High mobility group protein B1 [Tupaia chinensis]
Length = 289
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPSAFF+F E+R K EHP +
Sbjct: 91 DPNSPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|112491006|pdb|2GZK|A Chain A, Structure Of A Complex Of Tandem Hmg Boxes And Dna
Length = 159
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 84 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 114
>gi|148238271|ref|NP_001081794.1| high mobility group protein-1 [Xenopus laevis]
gi|709959|gb|AAC59859.1| high mobility group protein-1 [Xenopus laevis]
Length = 210
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 22/30 (73%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
KDPN PKRPPSAFF+F +FR K EHP
Sbjct: 89 KDPNAPKRPPSAFFLFCSDFRPKIKGEHPG 118
>gi|49115548|gb|AAH73449.1| HMG-1 protein [Xenopus laevis]
Length = 210
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 22/30 (73%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
KDPN PKRPPSAFF+F +FR K EHP
Sbjct: 89 KDPNAPKRPPSAFFLFCSDFRPKIKGEHPG 118
>gi|444722008|gb|ELW62714.1| High mobility group protein B1 [Tupaia chinensis]
Length = 224
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFFFCSEYRPKIKGEHPGL 120
>gi|357144307|ref|XP_003573245.1| PREDICTED: high mobility group B protein 7-like [Brachypodium
distachyon]
Length = 218
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
N KRPP+AFF+F+++FR +K HP+ K VSAV
Sbjct: 99 NGKKRPPTAFFIFMKDFRLEFKASHPDEKGVSAVG 133
>gi|296227498|ref|XP_002759405.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 215
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPSAFF+F E+R K EHP +
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|28279681|gb|AAH45917.1| High-mobility group box 1 [Danio rerio]
gi|182891806|gb|AAI65307.1| Hmgb1 protein [Danio rerio]
Length = 205
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F EFR K+E P +
Sbjct: 89 KDPNAPKRPPSAFFIFCSEFRPKVKEETPGL 119
>gi|42476233|ref|NP_955849.2| high mobility group protein B1 [Danio rerio]
gi|37681827|gb|AAQ97791.1| high-mobility group box 1 [Danio rerio]
gi|45595607|gb|AAH67193.1| High-mobility group box 1 [Danio rerio]
Length = 205
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F EFR K+E P +
Sbjct: 89 KDPNAPKRPPSAFFIFCSEFRPKVKEETPGL 119
>gi|296202119|ref|XP_002748265.1| PREDICTED: high mobility group protein B1-like isoform 1
[Callithrix jacchus]
gi|390463329|ref|XP_003733013.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 214
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPSAFF+F E+R K EHP +
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|355754606|gb|EHH58507.1| hypothetical protein EGM_08375 [Macaca fascicularis]
Length = 263
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|300677968|gb|ADK27291.1| high-mobility-group B1b [Gekko japonicus]
Length = 215
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+DPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 EDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|225715078|gb|ACO13385.1| High mobility group protein B3 [Esox lucius]
Length = 204
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 25/38 (65%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K K AKKDPN PKRPPS FFVF E R K +HP+
Sbjct: 83 KRGKKAKKDPNAPKRPPSGFFVFCAEQRPKIKAQHPSF 120
>gi|355700906|gb|EHH28927.1| hypothetical protein EGK_09214, partial [Macaca mulatta]
Length = 263
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|351724833|ref|NP_001237839.1| uncharacterized protein LOC100305607 [Glycine max]
gi|255626057|gb|ACU13373.1| unknown [Glycine max]
Length = 150
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 30/37 (81%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
D KP++PP+AFF FLE+FRK +++++P+V+++ +
Sbjct: 58 DAMKPRKPPTAFFYFLEDFRKEFQEQNPDVRSMRDIG 94
>gi|432895946|ref|XP_004076239.1| PREDICTED: high mobility group-T protein-like [Oryzias latipes]
Length = 206
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F EFR K E P +
Sbjct: 89 KDPNAPKRPPSAFFIFCSEFRPKVKGESPGL 119
>gi|432104603|gb|ELK31215.1| High mobility group protein B1 [Myotis davidii]
Length = 201
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 15 NEVVKPVEDRAAGKRKAVLKASRSSNKRT--------KNVKSAKKDPNKPKRPPSAFFVF 66
+E K + + GK + + KA ++ KR K+ KDPN+PKRPPSAFF+F
Sbjct: 46 SERWKTMSAKEKGKFEDMAKADKARYKREMKTYIPPKGETKNTFKDPNEPKRPPSAFFLF 105
Query: 67 LEEFRKVYKQEHPNV 81
E+ K EHP +
Sbjct: 106 CSEYCPKIKGEHPGL 120
>gi|409050062|gb|EKM59539.1| hypothetical protein PHACADRAFT_250106 [Phanerochaete carnosa
HHB-10118-sp]
Length = 256
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 16 EVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYK 75
+++ P + GKRKA KR + K KDPN PKRPPS++ +F E R+ K
Sbjct: 62 QMLPPQAEPTGGKRKAR-GDDEGEGKRKRKTKP--KDPNAPKRPPSSYLLFQNEVRQELK 118
Query: 76 QEHPNV 81
+HPN+
Sbjct: 119 AKHPNI 124
>gi|225195617|gb|ACN82086.1| high-mobility group box 1 [Carassius auratus]
gi|225195619|gb|ACN82087.1| high-mobility group box 1 [Megalobrama amblycephala]
gi|225195623|gb|ACN82089.1| high-mobility group box 1 [Carassius auratus x Megalobrama
amblycephala]
Length = 193
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F EFR K+E P +
Sbjct: 78 KDPNAPKRPPSAFFIFCSEFRPKVKEETPGL 108
>gi|444726214|gb|ELW66754.1| High mobility group protein B1 [Tupaia chinensis]
Length = 160
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAF +F E+R K EHP +
Sbjct: 39 KDPNAPKRPPSAFLLFCSEYRPKIKGEHPGL 69
>gi|225195621|gb|ACN82088.1| high-mobility group box 1 [Carassius auratus x Megalobrama
amblycephala]
Length = 193
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F EFR K+E P +
Sbjct: 78 KDPNAPKRPPSAFFIFCAEFRPKVKEETPGL 108
>gi|392340368|ref|XP_003754052.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392347889|ref|XP_003749961.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 215
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+ K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYHPKIKGEHPGL 120
>gi|205780950|sp|B2RPK0.1|HGB1A_HUMAN RecName: Full=Putative high mobility group protein B1-like 1;
AltName: Full=High mobility group protein B1 pseudogene
1; AltName: Full=Putative high mobility group protein
1-like 1; Short=HMG-1L1
gi|187950665|gb|AAI37483.1| High-mobility group box 1-like 1 [Homo sapiens]
gi|187953577|gb|AAI37484.1| High-mobility group box 1-like 1 [Homo sapiens]
Length = 211
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+ K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYHPKIKGEHPGL 120
>gi|444526057|gb|ELV14266.1| High mobility group protein B1 [Tupaia chinensis]
Length = 166
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+ K EHP +
Sbjct: 78 KDPNTPKRPPSAFFLFCSEYSPKIKGEHPGL 108
>gi|296200444|ref|XP_002747606.1| PREDICTED: high mobility group protein B1-like isoform 2
[Callithrix jacchus]
Length = 210
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDP+ PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPSAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|156382433|ref|XP_001632558.1| predicted protein [Nematostella vectensis]
gi|156219615|gb|EDO40495.1| predicted protein [Nematostella vectensis]
Length = 287
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 4/57 (7%)
Query: 32 VLKASRSSNKRTKNVKSAK----KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAV 84
V A+ SS+K+ K+ SAK KDPN PK+P +AFF+F ++ R V +++H + AV
Sbjct: 86 VSNATTSSHKKGKSRSSAKQDKEKDPNAPKKPANAFFMFCQQQRTVMQEDHKDATAV 142
>gi|291415754|ref|XP_002724114.1| PREDICTED: high-mobility group box 2-like [Oryctolagus cuniculus]
Length = 234
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPSAFF+F E R K EHP +
Sbjct: 115 DPNAPKRPPSAFFLFCSEHRPEIKSEHPGL 144
>gi|225709792|gb|ACO10742.1| High mobility group protein B2 [Caligus rogercresseyi]
Length = 215
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 7/48 (14%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K S+++ KR KKDPN PKRPPSAFFVF E R K ++P +
Sbjct: 82 KGSKAAGKR-------KKDPNAPKRPPSAFFVFCAEHRGRIKADNPGM 122
>gi|213514690|ref|NP_001133170.1| high-mobility group box 2 [Salmo salar]
gi|197632301|gb|ACH70874.1| high-mobility group box 2 [Salmo salar]
gi|221219834|gb|ACM08578.1| High mobility group protein B2 [Salmo salar]
gi|221220870|gb|ACM09096.1| High mobility group protein B2 [Salmo salar]
gi|223646276|gb|ACN09896.1| High mobility group protein B2 [Salmo salar]
gi|223646962|gb|ACN10239.1| High mobility group protein B2 [Salmo salar]
gi|223672123|gb|ACN12243.1| High mobility group protein B2 [Salmo salar]
gi|223672825|gb|ACN12594.1| High mobility group protein B2 [Salmo salar]
Length = 214
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 7/48 (14%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K S+++ KR KKDPN PKRPPSAFFVF E R K ++P +
Sbjct: 82 KGSKAAGKR-------KKDPNAPKRPPSAFFVFCAEHRGRIKADNPGM 122
>gi|148701877|gb|EDL33824.1| mCG140646 [Mus musculus]
Length = 207
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+ K EHP +
Sbjct: 91 KDPNAPKRPPSAFFLFCSEYHPKIKGEHPGL 121
>gi|327268628|ref|XP_003219098.1| PREDICTED: high mobility group protein B2-like [Anolis
carolinensis]
Length = 209
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+KDPN PKRPPSAFF+F E R K +HP +
Sbjct: 87 RKDPNAPKRPPSAFFLFCSEHRPKIKSDHPGL 118
>gi|609553|gb|AAA74556.1| HMG-T2 [Oncorhynchus mykiss]
Length = 215
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 7/48 (14%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K S+++ KR KKDPN PKRPPSAFFVF E R K ++P +
Sbjct: 82 KGSKAAGKR-------KKDPNAPKRPPSAFFVFCAEHRGRIKADNPGM 122
>gi|221221606|gb|ACM09464.1| High mobility group protein B2 [Salmo salar]
gi|223646184|gb|ACN09850.1| High mobility group protein B2 [Salmo salar]
gi|223646756|gb|ACN10136.1| High mobility group protein B2 [Salmo salar]
gi|223672031|gb|ACN12197.1| High mobility group protein B2 [Salmo salar]
gi|223672611|gb|ACN12487.1| High mobility group protein B2 [Salmo salar]
Length = 214
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 7/48 (14%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K S+++ KR KKDPN PKRPPSAFFVF E R K ++P +
Sbjct: 82 KGSKAAGKR-------KKDPNAPKRPPSAFFVFCAEHRGRIKADNPGM 122
>gi|357165293|ref|XP_003580334.1| PREDICTED: HMG1/2-like protein-like [Brachypodium distachyon]
Length = 135
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 31 AVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
A KAS K T V KPKR P+ FF FL EFR Y ++HP K V+AV+
Sbjct: 9 ASFKASGKRKKATGGVA-------KPKRAPTPFFAFLAEFRPQYMEKHPEAKGVAAVT 59
>gi|221220618|gb|ACM08970.1| High mobility group protein B3 [Salmo salar]
gi|223646914|gb|ACN10215.1| High mobility group protein B3 [Salmo salar]
gi|223672777|gb|ACN12570.1| High mobility group protein B3 [Salmo salar]
Length = 201
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 24/38 (63%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K K A KDPN PKRPPS FFVF E R K +HPN
Sbjct: 83 KRGKKALKDPNAPKRPPSGFFVFCAEQRPKIKAQHPNF 120
>gi|221219912|gb|ACM08617.1| High mobility group protein B3 [Salmo salar]
Length = 201
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 24/38 (63%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K K A KDPN PKRPPS FFVF E R K +HPN
Sbjct: 83 KRGKKALKDPNAPKRPPSGFFVFCAEQRPKIKAQHPNF 120
>gi|221220328|gb|ACM08825.1| High mobility group protein B3 [Salmo salar]
Length = 203
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 23/35 (65%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K A KDPN PKRPPS FFVF E R K +HPN
Sbjct: 86 KKALKDPNAPKRPPSGFFVFCAEQRPKIKAQHPNF 120
>gi|74138677|dbj|BAE27155.1| unnamed protein product [Mus musculus]
Length = 215
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K +HP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGKHPGL 120
>gi|320091041|gb|ADW08807.1| high mobility group box X [Lethenteron camtschaticum]
Length = 225
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKRPPSAFF+F +FR K ++P +
Sbjct: 93 KKDPNAPKRPPSAFFIFCADFRPQIKADNPGM 124
>gi|297302803|ref|XP_001082943.2| PREDICTED: high mobility group protein B1-like [Macaca mulatta]
Length = 169
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPS+FF+F E+R K EHP +
Sbjct: 50 KDPNVPKRPPSSFFLFCSEYRPKTKGEHPGL 80
>gi|109490746|ref|XP_001074778.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392351213|ref|XP_003750876.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 211
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PK PPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKTPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|444729048|gb|ELW69479.1| High mobility group protein B1 [Tupaia chinensis]
Length = 172
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K +HP +
Sbjct: 78 KDPNAPKRPPSAFFLFSSEYRPKIKGDHPGL 108
>gi|444706303|gb|ELW47646.1| Glycine/arginine-rich protein 1 [Tupaia chinensis]
Length = 485
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 35 KDPNAPKRPPSAFFLFCSEYRPKIK-EHPGL 64
>gi|335892930|gb|AEH59760.1| high mobility group box 2 [Lethenteron camtschaticum]
Length = 194
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFFVF E R K +HP +
Sbjct: 88 KDPNAPKRPPSAFFVFCSEHRPKVKADHPGL 118
>gi|168056739|ref|XP_001780376.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668218|gb|EDQ54830.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 207
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
DPN PKRP S F VF+E FRK YK +P
Sbjct: 107 DPNAPKRPASGFLVFMESFRKTYKDANP 134
>gi|66840992|emb|CAI64395.1| putative high mobility group protein [Triticum aestivum]
Length = 112
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KPKR P+ FF FL EFR Y ++HP K V+AV+
Sbjct: 22 KPKRAPTPFFAFLAEFRPQYMEKHPEAKGVAAVT 55
>gi|326525246|dbj|BAK07893.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 215
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
K KRPP+AFF+F+++FR +K HP+ K V+AV
Sbjct: 100 KAKRPPTAFFLFMKDFRVEFKTSHPDEKGVAAVG 133
>gi|449500530|ref|XP_002187513.2| PREDICTED: high mobility group protein B2 [Taeniopygia guttata]
Length = 145
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPSAFF+F E R K EHP +
Sbjct: 40 DPNAPKRPPSAFFLFCSEHRPKIKNEHPGL 69
>gi|407262070|ref|XP_003945989.1| PREDICTED: high mobility group protein B1-like [Mus musculus]
Length = 213
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F +R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSGYRPKIKGEHPGL 120
>gi|444519462|gb|ELV12862.1| High mobility group protein B1 [Tupaia chinensis]
Length = 157
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDP+ PKRPPSAFF+F E+ K EHP++
Sbjct: 38 KDPSAPKRPPSAFFLFCSEYHPQIKGEHPDI 68
>gi|196119855|gb|ACG69451.1| high-mobility group box 1 (predicted) [Otolemur garnettii]
Length = 155
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKR PSAFF+F E+R K EHP +
Sbjct: 39 KDPNAPKRLPSAFFLFCSEYRPKIKGEHPGL 69
>gi|149726074|ref|XP_001503141.1| PREDICTED: high mobility group protein B1-like [Equus caballus]
Length = 215
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+ K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYHPKIKGEHPGL 120
>gi|413949487|gb|AFW82136.1| hypothetical protein ZEAMMB73_682960 [Zea mays]
Length = 488
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KPK PPS FFVF+ FR+ Y+ +HP K+V+ +S
Sbjct: 227 GKPKHPPSTFFVFMSGFRQEYQVQHPGNKSVATMS 261
>gi|322517988|gb|ADX06860.1| high mobility group protein B1 [Sciaenops ocellatus]
Length = 206
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F EFR K E P +
Sbjct: 89 KDPNAPKRPPSAFFIFCSEFRPKVKGEAPGL 119
>gi|291392907|ref|XP_002712835.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
Length = 208
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+ K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYCPKIKGEHPGL 120
>gi|40352857|gb|AAH64790.1| Hmgb1 protein [Mus musculus]
Length = 215
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPP AFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPLAFFLFCSEYRPKIKGEHPGL 120
>gi|47227840|emb|CAG09003.1| unnamed protein product [Tetraodon nigroviridis]
Length = 199
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F EFR K E+P +
Sbjct: 89 KDPNAPKRPPSAFFLFCAEFRPKVKSENPGL 119
>gi|296470699|tpg|DAA12814.1| TPA: high mobility group box 3-like [Bos taurus]
Length = 197
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 45 NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+ K KKDPN PKRPPS FF+F EF K +P +
Sbjct: 79 SAKGGKKDPNAPKRPPSGFFLFFSEFCSEIKSTNPGI 115
>gi|225703820|gb|ACO07756.1| High mobility group protein B1 [Oncorhynchus mykiss]
Length = 193
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN KRPPSAFF+F +FR K EHP +
Sbjct: 89 KDPNALKRPPSAFFIFCADFRAKIKSEHPGL 119
>gi|82952271|ref|XP_889413.1| PREDICTED: high mobility group protein B1-like isoform 2 [Mus
musculus]
gi|407263905|ref|XP_003945567.1| PREDICTED: high mobility group protein B1-like isoform 1 [Mus
musculus]
Length = 215
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F +R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSGYRPKIKGEHPGL 120
>gi|354470970|ref|XP_003497717.1| PREDICTED: high mobility group protein B1-like [Cricetulus griseus]
Length = 215
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+ K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYCPKIKGEHPGL 120
>gi|335892928|gb|AEH59759.1| high mobility group box 1 [Lethenteron camtschaticum]
Length = 208
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKRPPSAFF++ E+R + E+P +
Sbjct: 90 KKDPNAPKRPPSAFFIYCAEYRSKVRAENPGL 121
>gi|27881711|gb|AAH44715.1| MGC52578 protein [Xenopus laevis]
Length = 212
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 22/32 (68%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKRPPSAFF+F E R K E P +
Sbjct: 90 KKDPNAPKRPPSAFFIFCSEHRPQIKSETPGL 121
>gi|1419611|emb|CAA67363.1| HMG [Lampetra fluviatilis]
Length = 208
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKRPPSAFF++ E+R + E+P +
Sbjct: 90 KKDPNAPKRPPSAFFIYCAEYRSKVRAENPGL 121
>gi|115459940|ref|NP_001053570.1| Os04g0564600 [Oryza sativa Japonica Group]
gi|38345400|emb|CAE03091.2| OSJNBa0017B10.6 [Oryza sativa Japonica Group]
gi|113565141|dbj|BAF15484.1| Os04g0564600 [Oryza sativa Japonica Group]
gi|116309704|emb|CAH66751.1| H0409D10.9 [Oryza sativa Indica Group]
gi|116309707|emb|CAH66753.1| OSIGBa0158F05.2 [Oryza sativa Indica Group]
gi|125549359|gb|EAY95181.1| hypothetical protein OsI_16998 [Oryza sativa Indica Group]
gi|149391231|gb|ABR25633.1| hmg1/2-like protein [Oryza sativa Indica Group]
gi|213959192|gb|ACJ54930.1| HMG protein [Oryza sativa Japonica Group]
gi|215767864|dbj|BAH00093.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222629376|gb|EEE61508.1| hypothetical protein OsJ_15798 [Oryza sativa Japonica Group]
gi|323388963|gb|ADX60286.1| HMG transcription factor [Oryza sativa Japonica Group]
Length = 132
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KPKR + FF FL EFR Y ++HPN K V+AV+
Sbjct: 23 GKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVT 57
>gi|344237192|gb|EGV93295.1| High mobility group protein B1 [Cricetulus griseus]
Length = 203
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+ K EHP +
Sbjct: 78 KDPNAPKRPPSAFFLFCSEYCPKIKGEHPGL 108
>gi|348525338|ref|XP_003450179.1| PREDICTED: high mobility group-T protein-like isoform 1
[Oreochromis niloticus]
Length = 200
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F +FR K E+P +
Sbjct: 89 KDPNAPKRPPSAFFLFCADFRPKIKSEYPGL 119
>gi|223649496|gb|ACN11506.1| High mobility group protein B3 [Salmo salar]
Length = 207
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K KKDPN PKRPPS FF+F + R K +HP++
Sbjct: 84 KGRKKDPNAPKRPPSGFFIFCADHRPKIKAQHPSL 118
>gi|90103305|gb|ABD85497.1| high mobility group box 1-like [Ictalurus punctatus]
Length = 182
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K+E P +
Sbjct: 70 KDPNAPKRPPSAFFIFCAEYRPKVKEETPGL 100
>gi|395856570|ref|XP_003800699.1| PREDICTED: high mobility group protein B1-like [Otolemur
garnettii]
Length = 161
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKR PSAFF+F E+R K EHP +
Sbjct: 39 KDPNAPKRLPSAFFLFCSEYRPKIKGEHPGL 69
>gi|148223673|ref|NP_001079576.1| HMG-X protein [Xenopus laevis]
gi|639691|dbj|BAA06440.1| HMG-X protein [Xenopus laevis]
Length = 212
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 22/32 (68%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKRPPSAFF+F E R K E P +
Sbjct: 90 KKDPNAPKRPPSAFFIFCSEHRPQIKSETPGL 121
>gi|213959194|gb|ACJ54931.1| HMG protein [Oryza sativa Japonica Group]
Length = 131
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KPKR + FF FL EFR Y ++HPN K V+AV+
Sbjct: 23 GKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVT 57
>gi|349604600|gb|AEQ00107.1| High mobility group protein B3-like protein, partial [Equus
caballus]
Length = 118
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 22/32 (68%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKRPPS FF+F EFR K +P +
Sbjct: 4 KKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 35
>gi|395732940|ref|XP_002813012.2| PREDICTED: nuclear autoantigen Sp-100-like [Pongo abelii]
Length = 263
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 15 NEVVKPVEDRAAGKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPSAFFVF 66
+E+ K + + GK + + KA ++ +R K KDPN PKRPP AFF+F
Sbjct: 105 SEIWKTIFAKEKGKFEDMAKADKAHYEREMKTYIPLKGEKKKKFKDPNAPKRPPLAFFLF 164
Query: 67 LEEFRKVYKQEHPNV 81
E+R K EHP +
Sbjct: 165 CSEYRPKIKGEHPGL 179
>gi|67475910|ref|XP_653586.1| high mobility group (HMG) box domain containing protein
[Entamoeba histolytica HM-1:IMSS]
gi|56470556|gb|EAL48200.1| high mobility group (HMG) box domain containing protein
[Entamoeba histolytica HM-1:IMSS]
gi|449703217|gb|EMD43706.1| high mobility group (HMG) box domain containing protein
[Entamoeba histolytica KU27]
Length = 111
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
PN+PKRPP+ +F++L E R K+EHP+ K I
Sbjct: 23 PNRPKRPPTPYFLYLNEHRASIKEEHPDAKVTEIAKI 59
>gi|195618458|gb|ACG31059.1| HMG1/2-like protein [Zea mays]
gi|195640852|gb|ACG39894.1| HMG1/2-like protein [Zea mays]
gi|223975443|gb|ACN31909.1| unknown [Zea mays]
gi|413925109|gb|AFW65041.1| HMG type nucleosome/chromatin assembly factor DNucleasome/chromatin
assembly factor D protein NFD106 [Zea mays]
Length = 212
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 38 SSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
S++++ + K K KR P+AFF+F+++FRK +K HP+ K+V+ V+
Sbjct: 74 SADRKKSSAKGGGNKDAKRKRSPTAFFLFMDDFRKEFKATHPDNKSVATVA 124
>gi|348541671|ref|XP_003458310.1| PREDICTED: high mobility group-T protein-like [Oreochromis
niloticus]
Length = 206
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPSAFF+F EFR K E P +
Sbjct: 91 DPNAPKRPPSAFFIFCSEFRPKVKGESPGL 120
>gi|444732691|gb|ELW72967.1| High mobility group protein B1 [Tupaia chinensis]
Length = 119
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KD N PKRPPSAFF+F E+R K EHP +
Sbjct: 38 KDSNAPKRPPSAFFLFCSEYRPKIKGEHPGL 68
>gi|326918606|ref|XP_003205579.1| PREDICTED: high mobility group protein B2-like [Meleagris
gallopavo]
Length = 246
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPSAFF+F E R K +HP +
Sbjct: 129 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGL 158
>gi|291410693|ref|XP_002721624.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
Length = 215
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKR PSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRTPSAFFLFCSEYRPKIKGEHPGL 120
>gi|79324303|ref|NP_001031480.1| high mobility group (HMG1/2) domain-containing protein
[Arabidopsis thaliana]
gi|330253882|gb|AEC08976.1| high mobility group (HMG1/2) domain-containing protein
[Arabidopsis thaliana]
Length = 152
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 27/32 (84%)
Query: 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
PK+P +AFF FL++FRK Y++E+P+VK++ V
Sbjct: 63 PKKPATAFFFFLDDFRKQYQEENPDVKSMREV 94
>gi|351715817|gb|EHB18736.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 165
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+ K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFYSEYCPQIKGEHPGL 120
>gi|395830755|ref|XP_003788484.1| PREDICTED: high mobility group protein B1-like [Otolemur
garnettii]
Length = 135
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN P RPPSAFF+F E+ K EHP +
Sbjct: 16 KDPNAPNRPPSAFFLFCSEYHPEIKGEHPGL 46
>gi|410917315|ref|XP_003972132.1| PREDICTED: high mobility group protein B2-like [Takifugu rubripes]
Length = 214
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKRPPSAFFVF + R K+++P +
Sbjct: 89 KKDPNAPKRPPSAFFVFCSDHRPKIKEDNPGI 120
>gi|296221849|ref|XP_002756934.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 203
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KD N PKRPPSAFF+F E+R K EHP +
Sbjct: 87 KDRNAPKRPPSAFFLFCSEYRPKIKGEHPGL 117
>gi|392333067|ref|XP_003752781.1| PREDICTED: high mobility group protein B3-like [Rattus norvegicus]
gi|392353165|ref|XP_001067503.2| PREDICTED: high mobility group protein B3-like [Rattus norvegicus]
Length = 212
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 22/32 (68%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKRPPS FF+F EFR K +P +
Sbjct: 101 KKDPNAPKRPPSGFFLFCSEFRPKIKSANPGI 132
>gi|349804477|gb|AEQ17711.1| putative high mobility group protein-1 [Hymenochirus curtipes]
Length = 143
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%), Gaps = 2/31 (6%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F +FR K EHP +
Sbjct: 88 KDPNAPKRPPSAFFLFCSDFR--IKGEHPGL 116
>gi|444729655|gb|ELW70064.1| High mobility group protein B1 [Tupaia chinensis]
Length = 161
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPP AFF+F E+ K+EHP++
Sbjct: 90 KDPNVPKRPPLAFFLFCSEYHPKIKEEHPDL 120
>gi|18403553|ref|NP_565788.1| high mobility group (HMG1/2) domain-containing protein
[Arabidopsis thaliana]
gi|75219838|sp|O64702.2|HMG14_ARATH RecName: Full=High mobility group B protein 14; AltName:
Full=Nucleosome/chromatin assembly factor group D 14
gi|20197083|gb|AAC26692.2| putative HMG protein [Arabidopsis thaliana]
gi|20197160|gb|AAM14948.1| putative HMG protein [Arabidopsis thaliana]
gi|21536857|gb|AAM61189.1| putative HMG protein [Arabidopsis thaliana]
gi|26452914|dbj|BAC43535.1| putative HMG protein [Arabidopsis thaliana]
gi|28973511|gb|AAO64080.1| putative HMG protein [Arabidopsis thaliana]
gi|330253881|gb|AEC08975.1| high mobility group (HMG1/2) domain-containing protein
[Arabidopsis thaliana]
Length = 151
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 27/32 (84%)
Query: 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
PK+P +AFF FL++FRK Y++E+P+VK++ +
Sbjct: 63 PKKPATAFFFFLDDFRKQYQEENPDVKSMREI 94
>gi|148668459|gb|EDL00778.1| mCG116117 [Mus musculus]
Length = 244
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F +R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSGYRPKIKGEHPGL 120
>gi|444729656|gb|ELW70065.1| High mobility group protein B1 [Tupaia chinensis]
Length = 161
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPP AFF+F E+ K+EHP++
Sbjct: 90 KDPNVPKRPPLAFFLFCSEYHPKIKEEHPDL 120
>gi|444727982|gb|ELW68448.1| High mobility group protein B1 [Tupaia chinensis]
Length = 165
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 16 EVVKPVEDRAAGKRKAVLKASRSSNKRT--------KNVKSAKKDPNKPKRPPSAFFVFL 67
E K + + GK +A+ K ++ +KR K DPN PKRPPSAF +F
Sbjct: 35 ERWKTMSAKEKGKFEAMAKVDKACDKREVKTYIPPKGETKEKFTDPNAPKRPPSAFSLFC 94
Query: 68 EEFRKVYKQEHPNV 81
E+R K EHP +
Sbjct: 95 SEYRPKIKGEHPGL 108
>gi|19923236|ref|NP_003104.2| nuclear autoantigen Sp-100 isoform 2 [Homo sapiens]
gi|13878931|sp|P23497.3|SP100_HUMAN RecName: Full=Nuclear autoantigen Sp-100; AltName: Full=Lysp100b;
AltName: Full=Nuclear dot-associated Sp100 protein;
AltName: Full=Speckled 100 kDa
gi|3252911|gb|AAC39790.1| SP100-HMG nuclear autoantigen [Homo sapiens]
gi|119591334|gb|EAW70928.1| SP100 nuclear antigen, isoform CRA_b [Homo sapiens]
Length = 879
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
DPN PKRPP AFF+F E+R K EHP + V
Sbjct: 765 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVV 800
>gi|222087985|gb|ACM41855.1| high mobility group box 2-like protein [Epinephelus coioides]
Length = 212
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPSAFFVF E R K+E P +
Sbjct: 87 DPNAPKRPPSAFFVFCSEHRPRIKEECPGI 116
>gi|162462896|ref|NP_001105076.1| nucleosome/chromatin assembly factor D [Zea mays]
gi|17017396|gb|AAL33652.1|AF440223_1 HMG type nucleosome/chromatin assembly factor D [Zea mays]
gi|22135475|gb|AAM93218.1|AF527617_1 nucleasome/chromatin assembly factor D protein NFD106 [Zea mays]
Length = 154
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%)
Query: 38 SSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
S++++ + K K KR P+AFF+F+++FRK +K HP+ K+V+ V+
Sbjct: 16 SADRKKSSAKGGGNKDAKRKRSPTAFFLFMDDFRKEFKATHPDNKSVATVA 66
>gi|62647362|ref|XP_575506.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|293346835|ref|XP_001060814.2| PREDICTED: high mobility group protein B1-like isoform 1 [Rattus
norvegicus]
Length = 214
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN KRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNALKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|449270893|gb|EMC81539.1| High mobility group protein B2 [Columba livia]
Length = 207
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPSAFF+F E R K +HP +
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGL 120
>gi|18653894|gb|AAL77438.1|L79988_1 nuclear autoantigen, partial [Homo sapiens]
Length = 403
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPP AFF+F E+R K EHP +
Sbjct: 289 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGL 318
>gi|444517137|gb|ELV11379.1| High mobility group protein B1 [Tupaia chinensis]
Length = 204
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%)
Query: 21 VEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
EDRA + + + ++ K K KDPN PKRPPSAFF+F E+ K EHP
Sbjct: 60 FEDRAKADKASYERDMKTDIPPKKETKKKFKDPNAPKRPPSAFFLFCSEYCPKIKGEHPG 119
Query: 81 V 81
+
Sbjct: 120 L 120
>gi|45382755|ref|NP_990817.1| high mobility group protein B2 [Gallus gallus]
gi|123373|sp|P26584.2|HMGB2_CHICK RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|211927|gb|AAA48818.1| non-histone chromosomal protein [Gallus gallus]
Length = 207
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPSAFF+F E R K +HP +
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGL 120
>gi|23396869|sp|Q9N1Q7.1|SP100_PANTR RecName: Full=Nuclear autoantigen Sp-100; AltName: Full=Nuclear
dot-associated Sp100 protein; AltName: Full=Speckled 100
kDa
gi|7239183|gb|AAF43108.1|AF169946_1 SP100-HMG nuclear autoantigen, partial [Pan troglodytes]
Length = 215
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPSAF 63
K ++E+ K + + GK + + KA ++ +R K KDPN PKRPP AF
Sbjct: 72 KKRSEMWKTIFAKEKGKFEDMAKADKAHYEREMKTYIPPKGEKKKKFKDPNAPKRPPLAF 131
Query: 64 FVFLEEFRKVYKQEHPNV 81
F+F E+R K EHP +
Sbjct: 132 FLFCSEYRPKIKGEHPGL 149
>gi|225706046|gb|ACO08869.1| High mobility group-T protein [Osmerus mordax]
Length = 204
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F +FR K E P +
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKVKGETPGL 119
>gi|211929|gb|AAA48819.1| high-mobility group-2 protein [Gallus gallus]
Length = 207
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPSAFF+F E R K +HP +
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGL 120
>gi|62822330|gb|AAY14879.1| unknown [Homo sapiens]
Length = 843
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPP AFF+F E+R K EHP +
Sbjct: 729 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGL 758
>gi|119591335|gb|EAW70929.1| SP100 nuclear antigen, isoform CRA_c [Homo sapiens]
Length = 844
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPP AFF+F E+R K EHP +
Sbjct: 730 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGL 759
>gi|478813|pir||S29857 nonhistone chromosomal protein HMG-1 - human
gi|184251|gb|AAA64970.1| HMG-1 [Homo sapiens]
Length = 216
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKR PSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRLPSAFFLFCSEYRPKIKGEHPGL 120
>gi|119584724|gb|EAW64320.1| hCG26831 [Homo sapiens]
Length = 212
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKR PSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRLPSAFFLFCSEYRPKIKGEHPGL 120
>gi|67484144|ref|XP_657292.1| high mobility group (HMG) box domain containing protein
[Entamoeba histolytica HM-1:IMSS]
gi|56474548|gb|EAL51913.1| high mobility group (HMG) box domain containing protein
[Entamoeba histolytica HM-1:IMSS]
Length = 114
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVK 82
PN+PKRPP+ +F++L E R K+EHP+++
Sbjct: 26 PNRPKRPPTPYFIYLNEHRASIKEEHPDIR 55
>gi|440912073|gb|ELR61675.1| Putative high mobility group protein B3-like protein, partial [Bos
grunniens mutus]
Length = 190
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 40 NKRTKNVKSAK----KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N+ K+ SAK KDPN PKRPPS FF+F EF K +P +
Sbjct: 71 NQEMKDYGSAKGGKKKDPNAPKRPPSGFFLFFSEFCSKIKSTNPGI 116
>gi|26342222|dbj|BAC34773.1| unnamed protein product [Mus musculus]
Length = 215
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKR PSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRLPSAFFLFCSEYRPKIKGEHPGL 120
>gi|23396867|sp|Q9N1Q5.1|SP100_HYLLA RecName: Full=Nuclear autoantigen Sp-100; AltName: Full=Nuclear
dot-associated Sp100 protein; AltName: Full=Speckled 100
kDa
gi|7239187|gb|AAF43110.1|AF169948_1 SP100-HMG nuclear autoantigen, partial [Hylobates lar]
Length = 242
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPP AFF+F E+R K EHP +
Sbjct: 139 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGL 168
>gi|23396868|sp|Q9N1Q6.1|SP100_GORGO RecName: Full=Nuclear autoantigen Sp-100; AltName: Full=Nuclear
dot-associated Sp100 protein; AltName: Full=Speckled 100
kDa
gi|7239185|gb|AAF43109.1|AF169947_1 SP100-HMG nuclear autoantigen, partial [Gorilla gorilla]
Length = 225
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPP AFF+F E+R K EHP +
Sbjct: 114 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGL 143
>gi|444730527|gb|ELW70909.1| High mobility group protein B1 [Tupaia chinensis]
Length = 238
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPP AFF+F E+R + EHP +
Sbjct: 90 KDPNAPKRPPLAFFLFCSEYRPKIEGEHPGL 120
>gi|195977121|gb|ACG63669.1| high-mobility group box 1 (predicted) [Otolemur garnettii]
Length = 227
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEH 78
KDPN PKRPPSAFF+F E+R K EH
Sbjct: 91 KDPNAPKRPPSAFFLFCSEYRPKIKGEH 118
>gi|332815636|ref|XP_003309551.1| PREDICTED: nuclear autoantigen Sp-100-like [Pan troglodytes]
Length = 205
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPP AFF+F E+R K EHP +
Sbjct: 91 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGL 120
>gi|29290594|emb|CAD83017.1| bM168F16.1 (novel protein similar to high-mobility group box 1
(Hmgb1)) [Mus musculus]
gi|148699130|gb|EDL31077.1| mCG49535 [Mus musculus]
Length = 208
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKR PSAFF+F E+ K EHP +
Sbjct: 90 KDPNAPKRSPSAFFLFCSEYCHKIKGEHPGL 120
>gi|183212221|gb|ACC54773.1| high-mobility group box 1 beta [Xenopus borealis]
Length = 95
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
KDPN PKRPPSAFF+F +FR K E+P
Sbjct: 38 KDPNAPKRPPSAFFLFCSDFRPKIKGEYPG 67
>gi|242080163|ref|XP_002444850.1| hypothetical protein SORBIDRAFT_07g000230 [Sorghum bicolor]
gi|241941200|gb|EES14345.1| hypothetical protein SORBIDRAFT_07g000230 [Sorghum bicolor]
Length = 221
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
K KR P+AFF+F+++FRK +K HP+ K+V+ V+
Sbjct: 96 KRKRSPTAFFLFMDDFRKEFKAAHPDNKSVATVA 129
>gi|444705868|gb|ELW47253.1| High mobility group protein B1 [Tupaia chinensis]
Length = 182
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+ K+ HP +
Sbjct: 78 KDPNAPKRPPSAFFLFCPEYHPKLKEGHPGL 108
>gi|444706336|gb|ELW47678.1| Leiomodin-1 [Tupaia chinensis]
Length = 823
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDP PKRPPSAFF+F E+ K EHP +
Sbjct: 90 KDPKAPKRPPSAFFLFCSEYCPKIKGEHPGL 120
>gi|444518100|gb|ELV11958.1| High mobility group protein B1 [Tupaia chinensis]
Length = 162
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
PN PKRPPSAFF+F E+R K EHP++
Sbjct: 92 PNVPKRPPSAFFLFCSEYRPKIKGEHPDL 120
>gi|149628522|ref|XP_001521757.1| PREDICTED: high mobility group protein B2-like, partial
[Ornithorhynchus anatinus]
Length = 106
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPSAFF+F E R K EHP +
Sbjct: 40 DPNAPKRPPSAFFLFCSEQRPKIKSEHPGL 69
>gi|426338818|ref|XP_004033369.1| PREDICTED: nuclear autoantigen Sp-100-like [Gorilla gorilla
gorilla]
Length = 205
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPP AFF+F E+R K EHP +
Sbjct: 91 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGL 120
>gi|7206622|gb|AAF39781.1| SP100-HMG [Homo sapiens]
Length = 181
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPP AFF+F E+R K EHP +
Sbjct: 67 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGL 96
>gi|426392256|ref|XP_004062472.1| PREDICTED: putative high mobility group protein B1-like 1-like
[Gorilla gorilla gorilla]
Length = 198
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDP+ PKRPPSAFF+F E+ K EHP +
Sbjct: 77 KDPSAPKRPPSAFFLFCSEYHPKIKGEHPGL 107
>gi|344243613|gb|EGV99716.1| hypothetical protein I79_017547 [Cricetulus griseus]
Length = 108
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 20 PVEDRAAGKRKAVLKASRSSNKRTKNVKSAKK---DPNKPKRPPSAFFVFLEEFRKVYKQ 76
P + + G + KA ++S +R N KK DPN PKRPP AFF+F E K
Sbjct: 2 PAKKKGGGGFEDTAKADKASYEREMNTYITKKKFKDPNVPKRPPLAFFLFCSENHPQTKG 61
Query: 77 EHPNV 81
EH +
Sbjct: 62 EHAGL 66
>gi|444727550|gb|ELW68036.1| High mobility group protein B1 [Tupaia chinensis]
Length = 149
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K+P+ PKRPPSAFF+F E+R K EHP +
Sbjct: 89 KNPSAPKRPPSAFFLFCSEYRPKIKGEHPGL 119
>gi|170784871|ref|NP_001116308.1| wu:fk52f12 [Danio rerio]
Length = 213
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKRPPS FF+F E R K ++P++
Sbjct: 86 KKDPNAPKRPPSGFFLFCSEHRPQIKAQYPSL 117
>gi|167396118|ref|XP_001741910.1| non-histone chromosomal protein [Entamoeba dispar SAW760]
gi|165893321|gb|EDR21615.1| non-histone chromosomal protein, putative [Entamoeba dispar
SAW760]
Length = 111
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 24/30 (80%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVK 82
PN+PK+P SA+F++L E R K+EHP++K
Sbjct: 23 PNRPKKPQSAYFLYLNEHRASIKEEHPDIK 52
>gi|444722397|gb|ELW63094.1| High mobility group protein B1 [Tupaia chinensis]
Length = 178
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K E P +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEPPGL 120
>gi|407263446|ref|XP_003084790.3| PREDICTED: uncharacterized protein LOC667284 [Mus musculus]
Length = 424
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPP AFF+F E+ K EHP +
Sbjct: 99 KDPNAPKRPPLAFFLFYSEYYPKIKGEHPGL 129
>gi|351702997|gb|EHB05916.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 204
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKR PS FF+F E+R K EHP +
Sbjct: 90 KDPNAPKRAPSTFFLFCSEYRPKIKGEHPGL 120
>gi|432889764|ref|XP_004075350.1| PREDICTED: high mobility group-T protein-like [Oryzias latipes]
Length = 194
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F +FR K E P +
Sbjct: 89 KDPNAPKRPPSAFFLFCADFRPKIKSESPGL 119
>gi|297813579|ref|XP_002874673.1| hypothetical protein ARALYDRAFT_489947 [Arabidopsis lyrata subsp.
lyrata]
gi|297320510|gb|EFH50932.1| hypothetical protein ARALYDRAFT_489947 [Arabidopsis lyrata subsp.
lyrata]
Length = 448
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 43 TKNVKSAKK-DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
TKN K +K DPNKPK+P S++F+F +E RK +EHP +
Sbjct: 360 TKNKKKNEKVDPNKPKKPASSYFLFCKEARKSVLEEHPGI 399
>gi|229367846|gb|ACQ58903.1| High mobility group protein B2 [Anoplopoma fimbria]
Length = 213
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPSAFFVF + R K+E+P +
Sbjct: 92 DPNAPKRPPSAFFVFCSDHRPRIKEENPGI 121
>gi|238586980|ref|XP_002391336.1| hypothetical protein MPER_09251 [Moniliophthora perniciosa FA553]
gi|215455859|gb|EEB92266.1| hypothetical protein MPER_09251 [Moniliophthora perniciosa FA553]
Length = 269
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP S++ ++ E R+ K++HPN+
Sbjct: 73 KDPNAPKRPASSYIIYQNEVRQTIKEQHPNL 103
>gi|309265997|ref|XP_003086707.1| PREDICTED: uncharacterized protein LOC667284 [Mus musculus]
Length = 433
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F + K EHP++
Sbjct: 89 KDPNAPKRPPSAFFLFYSVYYPKIKGEHPDL 119
>gi|403286915|ref|XP_003934714.1| PREDICTED: high mobility group protein B1-like isoform 1 [Saimiri
boliviensis boliviensis]
gi|403286917|ref|XP_003934715.1| PREDICTED: high mobility group protein B1-like isoform 2 [Saimiri
boliviensis boliviensis]
gi|403286919|ref|XP_003934716.1| PREDICTED: high mobility group protein B1-like isoform 3 [Saimiri
boliviensis boliviensis]
gi|403286921|ref|XP_003934717.1| PREDICTED: high mobility group protein B1-like isoform 4 [Saimiri
boliviensis boliviensis]
Length = 206
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPP AFF+F E+R K E+P +
Sbjct: 90 KDPNAPKRPPLAFFLFCSEYRPKIKGEYPGL 120
>gi|339715208|ref|NP_001092721.2| high-mobility group box 1b [Danio rerio]
Length = 197
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F ++R K E+P +
Sbjct: 89 KDPNAPKRPPSAFFIFCGDYRPKIKGENPGL 119
>gi|444716453|gb|ELW57303.1| High mobility group protein B1 [Tupaia chinensis]
Length = 213
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 25/32 (78%), Gaps = 3/32 (9%)
Query: 51 KDPNKPKRPPSAFFVFLEEFR-KVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K+ +EHP +
Sbjct: 77 KDPNAPKRPPSAFFLFCSEYRPKI--REHPGL 106
>gi|353351504|emb|CBX36444.1| high-mobility-group-1 protein [Plecoglossus altivelis]
Length = 204
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 21/30 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
KDPN PKRPPSAFF+F +FR K E P
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKVKGETPG 118
>gi|37779034|gb|AAP20177.1| high mobility group protein [Pagrus major]
Length = 200
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F +FR K ++P +
Sbjct: 89 KDPNAPKRPPSAFFLFCADFRPKVKGDYPGL 119
>gi|449706835|gb|EMD46595.1| high mobility group (HMG) box domain containing protein, partial
[Entamoeba histolytica KU27]
Length = 76
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVK 82
PN+PKRPP+ +F++L E R K+EHP+++
Sbjct: 26 PNRPKRPPTPYFIYLNEHRASIKEEHPDIR 55
>gi|410910282|ref|XP_003968619.1| PREDICTED: high mobility group-T protein-like isoform 1 [Takifugu
rubripes]
Length = 196
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E R K E+P +
Sbjct: 89 KDPNAPKRPPSAFFLFCAELRPKVKSENPGL 119
>gi|148235321|ref|NP_001089163.1| high mobility group box 3 [Xenopus laevis]
gi|55824420|gb|AAV66347.1| high mobility group B3b protein [Xenopus laevis]
gi|114108280|gb|AAI23148.1| LOC734200 protein [Xenopus laevis]
Length = 201
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPS FF+F EFR K +P +
Sbjct: 88 KDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|449706836|gb|EMD46596.1| HMG (high mobility group) box domain containing protein, putative
[Entamoeba histolytica KU27]
Length = 80
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVK 82
PN+PKRPP+ +F++L E R K+EHP+++
Sbjct: 26 PNRPKRPPTPYFIYLNEHRASIKEEHPDIR 55
>gi|444729306|gb|ELW69730.1| High mobility group protein B1 [Tupaia chinensis]
Length = 160
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPP AFF+F E+ + EHP +
Sbjct: 39 KDPNAPKRPPLAFFLFCSEYHPKIRGEHPGL 69
>gi|444519010|gb|ELV12502.1| Zinc finger protein 566 [Tupaia chinensis]
Length = 601
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 19 KPVEDRAAGKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPSAFFVFLEEF 70
+P+ + GK + + K S+ +R K KDPN+ KRPP FF+F E+
Sbjct: 18 RPISAKEKGKFEDMAKVSKVHYEREMKTYIPPKGETKKKFKDPNELKRPPLTFFLFCSEY 77
Query: 71 RKVYKQEHPNV 81
R+ K EHP +
Sbjct: 78 RQKIKGEHPGL 88
>gi|229368114|gb|ACQ59037.1| High mobility group protein B1 [Anoplopoma fimbria]
Length = 206
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K E P
Sbjct: 89 KDPNAPKRPPSAFFIFCAEYRPKVKGETPGA 119
>gi|431920081|gb|ELK18129.1| High mobility group protein B3 [Pteropus alecto]
Length = 255
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 141 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 170
>gi|401887840|gb|EJT51817.1| nonhistone protein 6 [Trichosporon asahii var. asahii CBS 2479]
Length = 234
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSA+ +F + R+ +Q HP +
Sbjct: 85 KDPNAPKRPPSAYLLFQNDIREEIRQAHPGM 115
>gi|348566777|ref|XP_003469178.1| PREDICTED: high mobility group protein B2-like [Cavia porcellus]
Length = 211
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 20/29 (68%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
PN PKRPPSAFF+F E R K EHP +
Sbjct: 93 PNAPKRPPSAFFLFCSEHRPKIKSEHPGL 121
>gi|406699554|gb|EKD02756.1| nonhistone protein 6 [Trichosporon asahii var. asahii CBS 8904]
Length = 234
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSA+ +F + R+ +Q HP +
Sbjct: 85 KDPNAPKRPPSAYLLFQNDIREEIRQAHPGM 115
>gi|402875874|ref|XP_003901718.1| PREDICTED: high mobility group protein B2-like, partial [Papio
anubis]
Length = 248
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 20/29 (68%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
PN PKRPPSAFF+F E R K EHP +
Sbjct: 127 PNAPKRPPSAFFLFCSEHRPKIKSEHPGL 155
>gi|351705938|gb|EHB08857.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 176
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPS FF+F E+ K EHP +
Sbjct: 28 KDPNAPKRPPSTFFLFCSEYCPKIKGEHPGL 58
>gi|3600053|gb|AAC35540.1| contains similarity to HMG (high mobility group) box (Pfam:
HMG_box.hmm, scores: 70.67, 53.09 and 80.15)
[Arabidopsis thaliana]
Length = 401
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 22/82 (26%)
Query: 22 EDRAA--GKRKAVLKASRSSNKRTKNVKSAKK--------------------DPNKPKRP 59
E RAA G+ K+V++ ++ + + KN+ KK DPNKPK+P
Sbjct: 271 ERRAALKGENKSVIEVAKMAGEEWKNLSEEKKAPYDQKTKETAKNKKKNENVDPNKPKKP 330
Query: 60 PSAFFVFLEEFRKVYKQEHPNV 81
S++F+F ++ RK +EHP +
Sbjct: 331 TSSYFLFCKDARKSVLEEHPGI 352
>gi|729728|sp|P40618.2|HMGB3_CHICK RecName: Full=High mobility group protein B3; AltName: Full=High
mobility group protein 2a; Short=HMG-2a; AltName:
Full=High mobility group protein 4; Short=HMG-4
gi|63494|emb|CAA45065.1| HMG2a [Gallus gallus]
Length = 202
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPSAFF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSAFFLFCSEFRPKIKSTNPGI 118
>gi|344245608|gb|EGW01712.1| High mobility group protein B1 [Cricetulus griseus]
Length = 162
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+ K E P +
Sbjct: 39 KDPNAPKRPPSAFFLFCSEYHPKIKGERPGL 69
>gi|296224352|ref|XP_002758030.1| PREDICTED: high mobility group protein B1-like isoform 1
[Callithrix jacchus]
gi|390474708|ref|XP_003734829.1| PREDICTED: high mobility group protein B1-like isoform 2
[Callithrix jacchus]
Length = 215
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKR PS FF+F E+R K EHP +
Sbjct: 90 KDPNAPKRTPSVFFLFCSEYRPKIKGEHPGL 120
>gi|346986304|ref|NP_001069753.2| high mobility group protein B3 isoform 1 [Bos taurus]
Length = 274
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 163 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI 192
>gi|444511434|gb|ELV09880.1| High mobility group protein B1 [Tupaia chinensis]
Length = 165
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+ K ++P +
Sbjct: 47 KDPNAPKRPPSAFFLFCSEYCPEIKGDYPGL 77
>gi|347921933|ref|NP_990626.2| high mobility group protein B3 [Gallus gallus]
Length = 217
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPSAFF+F EFR K +P +
Sbjct: 104 DPNAPKRPPSAFFLFCSEFRPKIKSTNPGI 133
>gi|432951224|ref|XP_004084757.1| PREDICTED: high mobility group protein B2-like [Oryzias latipes]
Length = 221
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPSAFFVF + R K+++P +
Sbjct: 114 DPNAPKRPPSAFFVFCSDHRPKIKEDNPGI 143
>gi|148707462|gb|EDL39409.1| mCG8212 [Mus musculus]
Length = 145
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 8/41 (19%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVS-AVSI 89
KKDPN PKRPPS FF+F EF HP +K + +SI
Sbjct: 35 KKDPNAPKRPPSGFFLFCSEF-------HPKIKFTNPGISI 68
>gi|20138433|sp|Q9UGV6.1|HMGLX_HUMAN RecName: Full=Putative high mobility group protein 1-like 10;
Short=HMG-1L10
Length = 211
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKR PSAFF+F +R K EHP +
Sbjct: 90 KDPNAPKRTPSAFFLFCSAYRPKIKGEHPGL 120
>gi|81673590|gb|AAI09794.1| High-mobility group box 3 [Bos taurus]
gi|296471156|tpg|DAA13271.1| TPA: high mobility group protein B3 isoform 1 [Bos taurus]
Length = 236
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 125 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI 154
>gi|303304752|emb|CBD77423.1| high mobility group box 2 protein [Plecoglossus altivelis]
Length = 215
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPSAFFVF + R K E+P +
Sbjct: 92 DPNAPKRPPSAFFVFCSDHRARIKGENPGI 121
>gi|409075359|gb|EKM75740.1| hypothetical protein AGABI1DRAFT_116212 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426198009|gb|EKV47935.1| hypothetical protein AGABI2DRAFT_191645 [Agaricus bisporus var.
bisporus H97]
Length = 262
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 28 KRKA--VLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KRKA L + KR +N K KDPN PKRP S++ +F E RK K +HP +
Sbjct: 53 KRKADVALDDDEAPKKRKRNAKP--KDPNAPKRPASSYILFQNEIRKQLKDQHPEL 106
>gi|440910877|gb|ELR60625.1| High mobility group protein B3 [Bos grunniens mutus]
Length = 236
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 125 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI 154
>gi|426258242|ref|XP_004022724.1| PREDICTED: high mobility group protein B3 [Ovis aries]
Length = 248
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 160 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI 189
>gi|395844161|ref|XP_003794831.1| PREDICTED: uncharacterized protein LOC100953571 [Otolemur
garnettii]
Length = 357
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PK PPS FF+F EFR K +P +
Sbjct: 253 KKDPNAPKTPPSGFFLFCSEFRPKIKSTNPGI 284
>gi|148694630|gb|EDL26577.1| mCG10155, isoform CRA_d [Mus musculus]
Length = 220
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 109 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 138
>gi|344253440|gb|EGW09544.1| High mobility group protein B1 [Cricetulus griseus]
Length = 169
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KD N PKRPPSAFF+F E+ K EHP +
Sbjct: 89 KDSNAPKRPPSAFFLFCSEYCPKIKGEHPGL 119
>gi|444708344|gb|ELW49421.1| High mobility group protein B1 [Tupaia chinensis]
Length = 302
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F ++R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSDYRPKIK-EHPGL 119
>gi|355705241|gb|EHH31166.1| hypothetical protein EGK_21042 [Macaca mulatta]
Length = 200
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKLKSTNPGI 118
>gi|444730059|gb|ELW70455.1| High mobility group protein B1 [Tupaia chinensis]
gi|444730060|gb|ELW70456.1| High mobility group protein B1 [Tupaia chinensis]
Length = 177
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPP AFF F E+ K EHP +
Sbjct: 57 KDPNAPKRPPLAFFFFCSEYCPKIKGEHPGL 87
>gi|444510285|gb|ELV09567.1| High mobility group protein B3 [Tupaia chinensis]
Length = 197
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 77 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 106
>gi|148684659|gb|EDL16606.1| mCG50402 [Mus musculus]
Length = 214
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+K KDPN PKRPPSAFF+F + K EHP++
Sbjct: 84 IKKKFKDPNAPKRPPSAFFLFYSVYYPKIKGEHPDL 119
>gi|395754558|ref|XP_002832281.2| PREDICTED: high mobility group protein B3 isoform 2 [Pongo abelii]
Length = 199
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|157832121|pdb|1NHM|A Chain A, The Structure Of The Hmg Box And Its Interaction With
Dna
gi|157832122|pdb|1NHN|A Chain A, The Structure Of The Hmg Box And Its Interaction With
Dna
Length = 81
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 20/28 (71%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E+R K EHP +
Sbjct: 3 NAPKRPPSAFFLFCSEYRPKIKGEHPGL 30
>gi|344235657|gb|EGV91760.1| hypothetical protein I79_006916 [Cricetulus griseus]
Length = 139
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K HP +
Sbjct: 16 KDPNAPKRPPSAFFLFCSEYRPKTKG-HPGL 45
>gi|444729825|gb|ELW70228.1| High mobility group protein B1 [Tupaia chinensis]
Length = 141
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
KDP+ PKRPPSAFF+F E+R K E P
Sbjct: 28 KDPSAPKRPPSAFFLFCSEYRPEIKGERPG 57
>gi|348551110|ref|XP_003461373.1| PREDICTED: high mobility group protein B3-like [Cavia porcellus]
Length = 202
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|354495940|ref|XP_003510086.1| PREDICTED: high mobility group protein B3-like [Cricetulus griseus]
gi|344249016|gb|EGW05120.1| High mobility group protein B3 [Cricetulus griseus]
Length = 200
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|2285963|emb|CAA71143.1| high mobility group protein 2a [Homo sapiens]
Length = 200
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|403305854|ref|XP_003943467.1| PREDICTED: high mobility group protein B3 [Saimiri boliviensis
boliviensis]
Length = 202
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|355694844|gb|AER99804.1| high-mobility group box 3 [Mustela putorius furo]
Length = 197
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 91 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 120
>gi|444713636|gb|ELW54532.1| High mobility group protein B1 [Tupaia chinensis]
Length = 148
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFR-KVYKQEHPNV 81
T K KDPN PKRPPS FF+F E+R K+ +EHP +
Sbjct: 20 TGETKKKFKDPNGPKRPPSVFFLFCSEYRPKI--REHPGL 57
>gi|311277128|ref|XP_003135516.1| PREDICTED: high mobility group protein B3-like [Sus scrofa]
Length = 202
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|148694627|gb|EDL26574.1| mCG10155, isoform CRA_b [Mus musculus]
Length = 206
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 95 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 124
>gi|164450473|ref|NP_001106728.1| high mobility group protein B3 isoform 2 [Bos taurus]
gi|146324910|sp|Q32L31.2|HMGB3_BOVIN RecName: Full=High mobility group protein B3
gi|296471157|tpg|DAA13272.1| TPA: high mobility group protein B3 isoform 2 [Bos taurus]
gi|399227521|gb|AFP36466.1| HMGB3 transcript variant 1/2 [Bos taurus]
gi|399227522|gb|AFP36467.1| HMGB3 transcript variant 3 [Bos taurus]
Length = 200
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI 118
>gi|57112857|ref|XP_538194.1| PREDICTED: high mobility group protein B3 [Canis lupus familiaris]
gi|338729649|ref|XP_001505130.3| PREDICTED: high mobility group protein B3-like isoform 1 [Equus
caballus]
Length = 201
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|417396975|gb|JAA45521.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 200
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|410219302|gb|JAA06870.1| high mobility group box 3 [Pan troglodytes]
Length = 199
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|301778413|ref|XP_002924621.1| PREDICTED: high mobility group protein B3-like [Ailuropoda
melanoleuca]
Length = 201
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|296236643|ref|XP_002763412.1| PREDICTED: high mobility group protein B3-like [Callithrix jacchus]
Length = 203
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|167773205|gb|ABZ92037.1| high-mobility group box 3 [synthetic construct]
Length = 198
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|109132602|ref|XP_001091672.1| PREDICTED: high mobility group protein B3-like isoform 3 [Macaca
mulatta]
gi|109132606|ref|XP_001091441.1| PREDICTED: high mobility group protein B3-like isoform 1 [Macaca
mulatta]
gi|402911729|ref|XP_003918461.1| PREDICTED: high mobility group protein B3 isoform 1 [Papio anubis]
gi|402911731|ref|XP_003918462.1| PREDICTED: high mobility group protein B3 isoform 2 [Papio anubis]
Length = 201
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|45360483|ref|NP_988904.1| high mobility group box 2 [Xenopus (Silurana) tropicalis]
gi|38181929|gb|AAH61601.1| high-mobility group box 2 [Xenopus (Silurana) tropicalis]
Length = 212
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPSAFF+F E R K E P +
Sbjct: 92 DPNAPKRPPSAFFLFCSEHRPQIKSESPGL 121
>gi|71143137|ref|NP_005333.2| high mobility group protein B3 [Homo sapiens]
gi|426397735|ref|XP_004065062.1| PREDICTED: high mobility group protein B3 isoform 1 [Gorilla
gorilla gorilla]
gi|426397739|ref|XP_004065064.1| PREDICTED: high mobility group protein B3 isoform 3 [Gorilla
gorilla gorilla]
gi|85701353|sp|O15347.4|HMGB3_HUMAN RecName: Full=High mobility group protein B3; AltName: Full=High
mobility group protein 2a; Short=HMG-2a; AltName:
Full=High mobility group protein 4; Short=HMG-4
gi|47124341|gb|AAH70482.1| HMGB3 protein [Homo sapiens]
gi|117645316|emb|CAL38124.1| hypothetical protein [synthetic construct]
gi|117646384|emb|CAL38659.1| hypothetical protein [synthetic construct]
gi|119619803|gb|EAW99397.1| high-mobility group box 3, isoform CRA_a [Homo sapiens]
gi|410351655|gb|JAA42431.1| high mobility group box 3 [Pan troglodytes]
gi|410351657|gb|JAA42432.1| high mobility group box 3 [Pan troglodytes]
Length = 200
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|410256410|gb|JAA16172.1| high mobility group box 3 [Pan troglodytes]
Length = 213
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|403417262|emb|CCM03962.1| predicted protein [Fibroporia radiculosa]
Length = 253
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 26 AGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
GKRK+ +K + +R + + K DPN PKRP S++ +F + R+ K+EHP +
Sbjct: 70 GGKRKSRIKVD-ADGRRIRTPRKLK-DPNAPKRPASSYLIFQNDVRQKLKEEHPGI 123
>gi|358410870|ref|XP_003581858.1| PREDICTED: high mobility group protein B3-like [Bos taurus]
Length = 197
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI 118
>gi|6680231|ref|NP_032279.1| high mobility group protein B3 [Mus musculus]
gi|20138160|sp|O54879.3|HMGB3_MOUSE RecName: Full=High mobility group protein B3; AltName: Full=High
mobility group protein 2a; Short=HMG-2a; AltName:
Full=High mobility group protein 4; Short=HMG-4
gi|2738989|gb|AAC16925.1| high mobility group protein homolog HMG4 [Mus musculus]
gi|15030059|gb|AAH11276.1| Hmgb3 protein [Mus musculus]
gi|26327985|dbj|BAC27733.1| unnamed protein product [Mus musculus]
gi|54035419|gb|AAH83352.1| High mobility group box 3 [Mus musculus]
gi|74146994|dbj|BAE27437.1| unnamed protein product [Mus musculus]
gi|74186760|dbj|BAE34835.1| unnamed protein product [Mus musculus]
gi|74192972|dbj|BAE34988.1| unnamed protein product [Mus musculus]
gi|74194280|dbj|BAE24671.1| unnamed protein product [Mus musculus]
gi|148694626|gb|EDL26573.1| mCG10155, isoform CRA_a [Mus musculus]
gi|148694628|gb|EDL26575.1| mCG10155, isoform CRA_a [Mus musculus]
gi|187957408|gb|AAI58038.1| High mobility group box 3 [Mus musculus]
Length = 200
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|291410190|ref|XP_002721383.1| PREDICTED: high-mobility group box 3 [Oryctolagus cuniculus]
Length = 215
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 104 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 133
>gi|148229870|ref|NP_001080585.1| high mobility group box 3 [Xenopus laevis]
gi|27882654|gb|AAH44009.1| Hmgb3-prov protein [Xenopus laevis]
Length = 202
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|410989557|ref|XP_004001438.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B3
[Felis catus]
Length = 201
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|392354293|ref|XP_003751730.1| PREDICTED: high mobility group protein B3-like isoform 1 [Rattus
norvegicus]
Length = 241
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 130 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI 159
>gi|348538096|ref|XP_003456528.1| PREDICTED: high mobility group protein B2-like [Oreochromis
niloticus]
Length = 196
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPSAFFVF + R K+++P +
Sbjct: 91 DPNAPKRPPSAFFVFCSDHRPKIKEDNPGI 120
>gi|350588033|ref|XP_003482539.1| PREDICTED: high mobility group protein B3-like [Sus scrofa]
gi|350588037|ref|XP_003482541.1| PREDICTED: high mobility group protein B3-like [Sus scrofa]
Length = 196
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|290560936|ref|NP_001166812.1| high mobility group box 3 [Rattus norvegicus]
gi|392354295|ref|XP_003751731.1| PREDICTED: high mobility group protein B3-like isoform 2 [Rattus
norvegicus]
gi|149027076|gb|EDL82825.1| rCG56793 [Rattus norvegicus]
gi|165971283|gb|AAI58740.1| Hmgb3 protein [Rattus norvegicus]
Length = 200
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI 118
>gi|148682307|gb|EDL14254.1| mCG114640 [Mus musculus]
Length = 200
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|395857208|ref|XP_003800997.1| PREDICTED: high mobility group protein B3-like [Otolemur garnettii]
Length = 225
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|344299188|ref|XP_003421269.1| PREDICTED: high mobility group protein B3-like [Loxodonta africana]
Length = 200
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|213515010|ref|NP_001133971.1| High mobility group protein B3 [Salmo salar]
gi|209156012|gb|ACI34238.1| High mobility group protein B3 [Salmo salar]
gi|223648118|gb|ACN10817.1| High mobility group protein B3 [Salmo salar]
Length = 206
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K KKDPN PKRP S FF+F + R K +HP++
Sbjct: 84 KGRKKDPNAPKRPSSGFFIFCADHRPKIKAQHPSL 118
>gi|167384542|ref|XP_001736998.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165900416|gb|EDR26737.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 112
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
PN+PKRP + +F++L E R K+EHP+ K I
Sbjct: 23 PNRPKRPQTPYFLYLHEHRASIKEEHPDAKVTEIAKI 59
>gi|444724258|gb|ELW64868.1| High mobility group protein B1 [Tupaia chinensis]
Length = 140
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K PN KRPPSAFF+F E+R K EHP +
Sbjct: 28 KGPNAAKRPPSAFFLFCSEYRPKIKGEHPGL 58
>gi|52345682|ref|NP_001004888.1| high mobility group box 3 [Xenopus (Silurana) tropicalis]
gi|49522962|gb|AAH75290.1| MGC88931 protein [Xenopus (Silurana) tropicalis]
gi|89267024|emb|CAJ81774.1| high-mobility group box 3 [Xenopus (Silurana) tropicalis]
Length = 202
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|395857418|ref|XP_003801091.1| PREDICTED: high mobility group protein B1-like [Otolemur garnettii]
Length = 197
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SAFF+F E+ K EHP +
Sbjct: 132 KDPNAPKRPLSAFFLFCSEYCPKSKGEHPGL 162
>gi|355762621|gb|EHH62030.1| hypothetical protein EGM_20207 [Macaca fascicularis]
Length = 201
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|253756810|gb|ACT35162.1| HmgB3y, partial [Monodelphis domestica]
Length = 193
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 86 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 115
>gi|397466921|ref|XP_003805186.1| PREDICTED: high mobility group protein B3 [Pan paniscus]
gi|410057106|ref|XP_001135676.3| PREDICTED: high mobility group protein B3 isoform 1 [Pan
troglodytes]
gi|426397737|ref|XP_004065063.1| PREDICTED: high mobility group protein B3 isoform 2 [Gorilla
gorilla gorilla]
gi|119619804|gb|EAW99398.1| high-mobility group box 3, isoform CRA_b [Homo sapiens]
Length = 220
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 109 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 138
>gi|62955511|ref|NP_001017769.1| high mobility group protein B3 [Danio rerio]
gi|62202670|gb|AAH93186.1| High-mobility group box 3b [Danio rerio]
gi|182890656|gb|AAI64996.1| Hmgb3b protein [Danio rerio]
Length = 198
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN P+RPPS FF+F E R + K ++P++
Sbjct: 88 KKDPNAPRRPPSGFFLFCAEQRPIIKAQNPSL 119
>gi|51858856|gb|AAH81424.1| Hmgb3b protein [Danio rerio]
Length = 166
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN P+RPPS FF+F E R + K ++P++
Sbjct: 88 KKDPNAPRRPPSGFFLFCAEQRPIIKAQNPSL 119
>gi|359062996|ref|XP_003585778.1| PREDICTED: high mobility group protein B3-like, partial [Bos
taurus]
Length = 186
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI 118
>gi|444513275|gb|ELV10301.1| High mobility group protein B1 [Tupaia chinensis]
Length = 161
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP AFF+F E+R K EHP +
Sbjct: 89 KDPNAPKRPLLAFFLFCSEYRPQIKGEHPGL 119
>gi|226443200|ref|NP_001140081.1| High mobility group-T protein [Salmo salar]
gi|223649418|gb|ACN11467.1| High mobility group-T protein [Salmo salar]
Length = 345
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SAFF+F +FR K E P +
Sbjct: 231 KDPNAPKRPSSAFFIFCADFRPQVKGETPGL 261
>gi|281338637|gb|EFB14221.1| hypothetical protein PANDA_014002 [Ailuropoda melanoleuca]
Length = 168
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|547652|sp|P36194.2|HMGB1_CHICK RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|391636|dbj|BAA03260.1| HMG-1 [Gallus gallus]
Length = 201
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 88 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 117
>gi|449269345|gb|EMC80131.1| High mobility group protein B3 [Columba livia]
Length = 202
Score = 41.6 bits (96), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|56384901|gb|AAV85889.1| high mobility group 1 protein [Pelodiscus sinensis]
Length = 202
Score = 41.6 bits (96), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|395545985|ref|XP_003774876.1| PREDICTED: high mobility group protein B3-like [Sarcophilus
harrisii]
Length = 201
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|149410917|ref|XP_001509199.1| PREDICTED: high mobility group protein B3-like isoform 1
[Ornithorhynchus anatinus]
gi|345306624|ref|XP_003428488.1| PREDICTED: high mobility group protein B3-like isoform 2
[Ornithorhynchus anatinus]
Length = 201
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|224098124|ref|XP_002198052.1| PREDICTED: high mobility group protein B3 isoform 1 [Taeniopygia
guttata]
gi|326924638|ref|XP_003208532.1| PREDICTED: high mobility group protein B3-like [Meleagris
gallopavo]
gi|449498655|ref|XP_004177286.1| PREDICTED: high mobility group protein B3 isoform 2 [Taeniopygia
guttata]
Length = 202
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|205539816|sp|P0C6E5.1|HG3BL_HUMAN RecName: Full=Putative high mobility group protein B3-like protein
Length = 187
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKRPPS FF+F EF K +P +
Sbjct: 86 KKDPNAPKRPPSGFFLFCSEFCPKSKSTNPGI 117
>gi|254826706|ref|NP_001157151.1| high mobility group protein B3 [Monodelphis domestica]
gi|253756818|gb|ACT35166.1| HmgB3x [Monodelphis domestica]
Length = 201
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|242219402|ref|XP_002475481.1| predicted protein [Postia placenta Mad-698-R]
gi|220725340|gb|EED79332.1| predicted protein [Postia placenta Mad-698-R]
Length = 261
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
KDPN PKRP S++ +F + R K+EHPN+ +S+
Sbjct: 75 KDPNAPKRPASSYLIFQNDVRNELKKEHPNLSNNELLSM 113
>gi|183212219|gb|ACC54772.1| high mobility group box 3 [Xenopus borealis]
Length = 152
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 97 DPNAPKRPPSGFFLFCSEFRPNIKSTNPGI 126
>gi|354484377|ref|XP_003504365.1| PREDICTED: high mobility group protein B2-like [Cricetulus griseus]
Length = 264
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 147 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 174
>gi|349802605|gb|AEQ16775.1| putative high mobility group box 3 [Pipa carvalhoi]
Length = 149
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 64 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 93
>gi|109076196|ref|XP_001085665.1| PREDICTED: high mobility group protein B2-like [Macaca mulatta]
Length = 321
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 207 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 234
>gi|291395415|ref|XP_002714100.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 210
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPSAFF+F E R + EH +
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIRSEHSGL 120
>gi|332847763|ref|XP_003315517.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pan troglodytes]
gi|397485725|ref|XP_003813991.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pan paniscus]
Length = 207
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKRPPS FF+F EF K +P +
Sbjct: 86 KKDPNAPKRPPSGFFLFCSEFCPKSKSTNPGI 117
>gi|444723313|gb|ELW63971.1| High mobility group protein B1 [Tupaia chinensis]
Length = 171
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPP FF+F E+R K+E P +
Sbjct: 81 KDPNAPKRPPLVFFLFCSEYRPKIKREQPGL 111
>gi|443684506|gb|ELT88434.1| hypothetical protein CAPTEDRAFT_172235 [Capitella teleta]
Length = 734
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
DPNKPKRP SA+F++L E R+ K E+P+
Sbjct: 546 DPNKPKRPQSAYFLWLNEMREEIKAENPD 574
>gi|395753165|ref|XP_003779555.1| PREDICTED: high mobility group protein B1-like [Pongo abelii]
Length = 215
Score = 41.2 bits (95), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KD N PKR PSAFF+F E+R K EHP +
Sbjct: 90 KDLNAPKRTPSAFFLFCSEYRPKIKGEHPGL 120
>gi|148910368|gb|ABR18262.1| unknown [Picea sitchensis]
Length = 122
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/22 (77%), Positives = 20/22 (90%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRK 72
KDPN+PK+P AFFVF+EEFRK
Sbjct: 96 KDPNRPKKPQPAFFVFMEEFRK 117
>gi|351706443|gb|EHB09362.1| High mobility group protein B3 [Heterocephalus glaber]
Length = 226
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K P +
Sbjct: 108 DPNAPKRPPSGFFLFCSEFRPKIKSTKPGI 137
>gi|410044942|ref|XP_001169551.3| PREDICTED: high mobility group protein B1-like [Pan troglodytes]
Length = 269
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 24 RAAGKRKAVLKASRSSNKRTK--------NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYK 75
RA GK + + K +S KR K KDPN PKRPPSAFF++ E+ K
Sbjct: 82 RARGKFEDMAKVDKSRYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLYFSEYGPKIK 141
Query: 76 QEHPNV 81
E P +
Sbjct: 142 GERPGL 147
>gi|147903143|ref|NP_001079387.1| high mobility group box 2 [Xenopus laevis]
gi|80479234|gb|AAI08500.1| MGC52825 protein [Xenopus laevis]
Length = 211
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPSAFF+F E R K E P +
Sbjct: 92 DPNAPKRPPSAFFLFCSEQRPQIKSETPGL 121
>gi|27370889|gb|AAH41262.1| MGC52825 protein [Xenopus laevis]
Length = 212
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPSAFF+F E R K E P +
Sbjct: 92 DPNAPKRPPSAFFLFCSEQRPQIKSETPGL 121
>gi|410955200|ref|XP_003984245.1| PREDICTED: high mobility group protein B2-like [Felis catus]
Length = 329
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
>gi|45935025|gb|AAS79547.1| At4g11080 [Arabidopsis thaliana]
gi|46367464|emb|CAG25858.1| hypothetical protein [Arabidopsis thaliana]
Length = 450
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPNKPK+P S++F+F ++ RK +EHP +
Sbjct: 372 DPNKPKKPTSSYFLFCKDARKSVLEEHPGI 401
>gi|170097113|ref|XP_001879776.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645179|gb|EDR09427.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 114
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 6/54 (11%)
Query: 28 KRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KRKA KA ++++++ KKDPNKPKR SA+ F +++R K E+P+
Sbjct: 9 KRKAAEKADKATSRK------GKKDPNKPKRALSAYMFFSQDWRDRIKAENPDA 56
>gi|444510699|gb|ELV09703.1| High mobility group protein B2 [Tupaia chinensis]
Length = 233
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
PN PKRPPSAFF+F E K EHP +
Sbjct: 92 PNVPKRPPSAFFLFCSEHHPKIKSEHPGL 120
>gi|348556930|ref|XP_003464273.1| PREDICTED: FACT complex subunit SSRP1-like [Cavia porcellus]
Length = 709
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 23 DRAAGKRKAVLKASRSSNK--RTKNVKSAK-KDPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
DR KRK + +A + ++ R K V++ K KDPN PKRP SA+ ++L R+ K +HP
Sbjct: 511 DREEKKRKQLKRAKMTKDRKSRKKTVEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP 570
Query: 80 NV 81
+
Sbjct: 571 GI 572
>gi|15237042|ref|NP_192846.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
gi|75266789|sp|Q9T012.1|HMG13_ARATH RecName: Full=High mobility group B protein 13; AltName:
Full=Nucleosome/chromatin assembly factor group D 13
gi|4850287|emb|CAB43043.1| 98b like protein [Arabidopsis thaliana]
gi|7267807|emb|CAB81209.1| 98b like protein [Arabidopsis thaliana]
gi|22136604|gb|AAM91621.1| putative 98b protein [Arabidopsis thaliana]
gi|332657570|gb|AEE82970.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
Length = 446
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPNKPK+P S++F+F ++ RK +EHP +
Sbjct: 368 DPNKPKKPTSSYFLFCKDARKSVLEEHPGI 397
>gi|351712376|gb|EHB15295.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 139
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAF +F E+ K HP +
Sbjct: 39 KDPNAPKRPPSAFLLFCSEYHPKIKGGHPRL 69
>gi|342319487|gb|EGU11435.1| Non-histone chromosomal protein [Rhodotorula glutinis ATCC
204091]
Length = 142
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVS 85
AKKDPN PKRP SA+ F ++ R V K+E+P+V V
Sbjct: 18 AKKDPNAPKRPLSAYMHFSQDQRSVVKEENPDVTFVG 54
>gi|444706070|gb|ELW47432.1| High mobility group protein B1 [Tupaia chinensis]
Length = 138
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKR PSAF +F E+R K EHP +
Sbjct: 15 KDPNAPKRLPSAFLLFCFEYRPKIKGEHPGL 45
>gi|403295709|ref|XP_003938773.1| PREDICTED: high mobility group protein B2 [Saimiri boliviensis
boliviensis]
Length = 158
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 42 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 69
>gi|344235655|gb|EGV91758.1| High mobility group protein B2 [Cricetulus griseus]
Length = 159
Score = 41.2 bits (95), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 42 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 69
>gi|444730108|gb|ELW70503.1| High mobility group protein B1 [Tupaia chinensis]
Length = 140
Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPP AFF+F E+R+ K E +
Sbjct: 16 KDPNAPKRPPLAFFLFCSEYRRKIKGEQSGL 46
>gi|403267260|ref|XP_003925762.1| PREDICTED: uncharacterized protein LOC101050525 [Saimiri
boliviensis boliviensis]
Length = 645
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DP+ PKRPPS FF+F EFR K +P +
Sbjct: 242 DPDAPKRPPSGFFLFCSEFRPKIKSTNPGI 271
>gi|344245465|gb|EGW01569.1| hypothetical protein I79_003161 [Cricetulus griseus]
Length = 163
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSA F+F E+R K EHP +
Sbjct: 15 KDPNAPKRPPSA-FLFCSEYRPKIKGEHPGL 44
>gi|291403518|ref|XP_002718101.1| PREDICTED: high mobility group box 3-like [Oryctolagus cuniculus]
Length = 197
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSRFFLFCSEFRPKIKSTNPGI 118
>gi|213513415|ref|NP_001133101.1| high mobility group protein B1 [Salmo salar]
gi|197631937|gb|ACH70692.1| high-mobility group box 1 [Salmo salar]
Length = 203
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SAFF+F +FR K E P +
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETPGL 119
>gi|291415373|ref|XP_002723927.1| PREDICTED: high-mobility group box 2-like [Oryctolagus cuniculus]
Length = 234
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 117 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 144
>gi|444732758|gb|ELW73033.1| High mobility group protein B2 [Tupaia chinensis]
Length = 234
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 127 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 154
>gi|1085210|pir||S48708 high-mobility-group-1 protein - trout
Length = 204
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SAFF+F +FR K E P +
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETPGL 119
>gi|194666188|ref|XP_875720.3| PREDICTED: high mobility group protein B2 [Bos taurus]
gi|297473608|ref|XP_002686711.1| PREDICTED: high mobility group protein B2 [Bos taurus]
gi|296488702|tpg|DAA30815.1| TPA: high-mobility group box 2-like [Bos taurus]
Length = 283
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 167 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 194
>gi|609551|gb|AAA58771.1| HMG-1 [Oncorhynchus mykiss]
Length = 204
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SAFF+F +FR K E P +
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETPGL 119
>gi|82658290|ref|NP_001032501.1| high mobility group protein B2 [Danio rerio]
gi|81294190|gb|AAI07992.1| Zgc:123215 [Danio rerio]
Length = 213
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPSAFFVF + R K ++P +
Sbjct: 91 DPNAPKRPPSAFFVFCSDHRPKVKGDNPGI 120
>gi|291413747|ref|XP_002723128.1| PREDICTED: high-mobility group box 2-like [Oryctolagus cuniculus]
Length = 234
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 117 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 144
>gi|221221482|gb|ACM09402.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SAFF+F +FR K E P +
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETPGL 119
>gi|297297620|ref|XP_001106417.2| PREDICTED: high mobility group protein B2-like [Macaca mulatta]
Length = 210
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
>gi|223646906|gb|ACN10211.1| High mobility group-T protein [Salmo salar]
gi|223672769|gb|ACN12566.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SAFF+F +FR K E P +
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETPGL 119
>gi|118488333|gb|ABK95985.1| unknown [Populus trichocarpa]
Length = 232
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
DPNKPK+P S+F +F +E RK EHP + + + ++
Sbjct: 154 DPNKPKKPASSFLLFSKETRKSLVHEHPGINSSTLTAM 191
>gi|32335|emb|CAA78938.1| HMG2B [Homo sapiens]
Length = 186
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 70 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 97
>gi|426251515|ref|XP_004019467.1| PREDICTED: high mobility group protein B2-like [Ovis aries]
Length = 209
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
>gi|426230076|ref|XP_004009107.1| PREDICTED: high mobility group protein B2-like [Ovis aries]
Length = 209
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
>gi|291414887|ref|XP_002723687.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 209
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
>gi|221221148|gb|ACM09235.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SAFF+F +FR K E P +
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETPGL 119
>gi|194208319|ref|XP_001498869.2| PREDICTED: high mobility group protein B2-like [Equus caballus]
Length = 210
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
>gi|119588737|gb|EAW68331.1| hCG1991922, isoform CRA_a [Homo sapiens]
gi|119588738|gb|EAW68332.1| hCG1991922, isoform CRA_a [Homo sapiens]
Length = 188
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF++ E+ K E P +
Sbjct: 39 KDPNAPKRPPSAFFLYFSEYGPKIKGERPGL 69
>gi|444722479|gb|ELW63171.1| High mobility group protein B2 [Tupaia chinensis]
Length = 147
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
PN PKRPPSAFF+F E K EHP +
Sbjct: 30 PNTPKRPPSAFFLFCSEHLPKIKSEHPGL 58
>gi|338712138|ref|XP_001497140.3| PREDICTED: FACT complex subunit SSRP1 [Equus caballus]
Length = 680
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 33 LKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+ R S K+ VK K DPN PKRP SA+ ++L R+ K +HP +
Sbjct: 525 MAKDRKSRKKPMEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI 572
>gi|354485801|ref|XP_003505070.1| PREDICTED: high mobility group protein B1-like [Cricetulus griseus]
Length = 198
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKR PSAFF+F E+R K E P +
Sbjct: 90 KDPNAPKRRPSAFFLFCSEYRPRIKGERPGL 120
>gi|224058355|ref|XP_002299486.1| high mobility group family [Populus trichocarpa]
gi|222846744|gb|EEE84291.1| high mobility group family [Populus trichocarpa]
Length = 498
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
DPNKPK+P S+F +F +E RK EHP + + + ++
Sbjct: 420 DPNKPKKPASSFLLFSKETRKSLVHEHPGINSSTLTAM 457
>gi|185135647|ref|NP_001118186.1| high mobility group-T protein [Oncorhynchus mykiss]
gi|123382|sp|P07746.2|HMGT_ONCMY RecName: Full=High mobility group-T protein; Short=HMG-T; AltName:
Full=HMG-T1; Short=HMG-1
gi|64328|emb|CAA26500.1| unnamed protein product [Oncorhynchus mykiss]
Length = 204
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SAFF+F +FR K E P +
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETPGL 119
>gi|291413749|ref|XP_002723129.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 219
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
>gi|431918327|gb|ELK17554.1| High mobility group protein B2 [Pteropus alecto]
Length = 209
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
>gi|426220609|ref|XP_004004507.1| PREDICTED: high mobility group protein B2 [Ovis aries]
Length = 205
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
>gi|73993609|ref|XP_543194.2| PREDICTED: high mobility group protein B2 isoform 1 [Canis lupus
familiaris]
gi|301753755|ref|XP_002912713.1| PREDICTED: high mobility group protein B2-like [Ailuropoda
melanoleuca]
gi|410956554|ref|XP_003984907.1| PREDICTED: high mobility group protein B2 [Felis catus]
gi|281338293|gb|EFB13877.1| hypothetical protein PANDA_000462 [Ailuropoda melanoleuca]
Length = 210
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
>gi|11321591|ref|NP_002120.1| high mobility group protein B2 [Homo sapiens]
gi|83035095|ref|NP_001032705.1| high mobility group protein B2 [Bos taurus]
gi|194688133|ref|NP_001124160.1| high mobility group protein B2 [Homo sapiens]
gi|194688135|ref|NP_001124161.1| high mobility group protein B2 [Homo sapiens]
gi|332820789|ref|XP_517538.3| PREDICTED: high mobility group protein B2 isoform 2 [Pan
troglodytes]
gi|332820791|ref|XP_003310651.1| PREDICTED: high mobility group protein B2 isoform 1 [Pan
troglodytes]
gi|397505874|ref|XP_003823467.1| PREDICTED: high mobility group protein B2 isoform 1 [Pan paniscus]
gi|397505876|ref|XP_003823468.1| PREDICTED: high mobility group protein B2 isoform 2 [Pan paniscus]
gi|397505878|ref|XP_003823469.1| PREDICTED: high mobility group protein B2 isoform 3 [Pan paniscus]
gi|410038949|ref|XP_003950520.1| PREDICTED: high mobility group protein B2 [Pan troglodytes]
gi|123374|sp|P26583.2|HMGB2_HUMAN RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|109940084|sp|P40673.3|HMGB2_BOVIN RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|32333|emb|CAA44395.1| HMG-2 [Homo sapiens]
gi|184236|gb|AAA58659.1| high mobility group 2 protein [Homo sapiens]
gi|12654471|gb|AAH01063.1| High-mobility group box 2 [Homo sapiens]
gi|54696426|gb|AAV38585.1| high-mobility group box 2 [Homo sapiens]
gi|61358840|gb|AAX41628.1| high-mobility group box 2 [synthetic construct]
gi|71679685|gb|AAI00020.1| HMGB2 protein [Homo sapiens]
gi|81674324|gb|AAI09756.1| High-mobility group box 2 [Bos taurus]
gi|119625163|gb|EAX04758.1| high-mobility group box 2, isoform CRA_a [Homo sapiens]
gi|119625164|gb|EAX04759.1| high-mobility group box 2, isoform CRA_a [Homo sapiens]
gi|123982946|gb|ABM83214.1| high-mobility group box 2 [synthetic construct]
gi|123997623|gb|ABM86413.1| high-mobility group box 2 [synthetic construct]
gi|189053183|dbj|BAG34805.1| unnamed protein product [Homo sapiens]
gi|208966462|dbj|BAG73245.1| high-mobility group box 2 [synthetic construct]
gi|296484972|tpg|DAA27087.1| TPA: high mobility group protein B2 [Bos taurus]
gi|380785663|gb|AFE64707.1| high mobility group protein B2 [Macaca mulatta]
gi|383417929|gb|AFH32178.1| high mobility group protein B2 [Macaca mulatta]
gi|383417931|gb|AFH32179.1| high mobility group protein B2 [Macaca mulatta]
gi|383417933|gb|AFH32180.1| high mobility group protein B2 [Macaca mulatta]
gi|384941858|gb|AFI34534.1| high mobility group protein B2 [Macaca mulatta]
gi|384946750|gb|AFI36980.1| high mobility group protein B2 [Macaca mulatta]
gi|410212048|gb|JAA03243.1| high-mobility group box 2 [Pan troglodytes]
gi|410212050|gb|JAA03244.1| high-mobility group box 2 [Pan troglodytes]
gi|410253758|gb|JAA14846.1| high-mobility group box 2 [Pan troglodytes]
gi|410253760|gb|JAA14847.1| high-mobility group box 2 [Pan troglodytes]
gi|410304294|gb|JAA30747.1| high-mobility group box 2 [Pan troglodytes]
gi|410304296|gb|JAA30748.1| high-mobility group box 2 [Pan troglodytes]
gi|410337391|gb|JAA37642.1| high-mobility group box 2 [Pan troglodytes]
gi|410337393|gb|JAA37643.1| high-mobility group box 2 [Pan troglodytes]
gi|410337395|gb|JAA37644.1| high mobility group box 2 [Pan troglodytes]
gi|440908504|gb|ELR58513.1| High mobility group protein B2 [Bos grunniens mutus]
gi|738688|prf||2001363A high mobility group protein 2
Length = 209
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
>gi|383417927|gb|AFH32177.1| high mobility group protein B2 [Macaca mulatta]
Length = 206
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
>gi|351701092|gb|EHB04011.1| High mobility group protein B2 [Heterocephalus glaber]
Length = 215
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 94 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 121
>gi|296195168|ref|XP_002745261.1| PREDICTED: high mobility group protein B2-like isoform 2
[Callithrix jacchus]
Length = 205
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
>gi|291385922|ref|XP_002709517.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
gi|344288245|ref|XP_003415861.1| PREDICTED: high mobility group protein B2-like [Loxodonta africana]
Length = 210
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
>gi|297674678|ref|XP_002815340.1| PREDICTED: high mobility group protein B2 isoform 1 [Pongo abelii]
gi|297674680|ref|XP_002815341.1| PREDICTED: high mobility group protein B2 isoform 2 [Pongo abelii]
gi|395735499|ref|XP_003776594.1| PREDICTED: high mobility group protein B2 [Pongo abelii]
gi|402870856|ref|XP_003899415.1| PREDICTED: high mobility group protein B2 isoform 1 [Papio anubis]
gi|402870858|ref|XP_003899416.1| PREDICTED: high mobility group protein B2 isoform 2 [Papio anubis]
gi|402871219|ref|XP_003899573.1| PREDICTED: high mobility group protein B2-like [Papio anubis]
gi|90086209|dbj|BAE91657.1| unnamed protein product [Macaca fascicularis]
Length = 210
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
>gi|332217748|ref|XP_003258025.1| PREDICTED: high mobility group protein B2 [Nomascus leucogenys]
gi|426346003|ref|XP_004040680.1| PREDICTED: high mobility group protein B2 isoform 1 [Gorilla
gorilla gorilla]
gi|426346005|ref|XP_004040681.1| PREDICTED: high mobility group protein B2 isoform 2 [Gorilla
gorilla gorilla]
gi|426346007|ref|XP_004040682.1| PREDICTED: high mobility group protein B2 isoform 3 [Gorilla
gorilla gorilla]
gi|54696428|gb|AAV38586.1| high-mobility group box 2 [Homo sapiens]
Length = 208
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
>gi|355778495|gb|EHH63531.1| hypothetical protein EGM_16518 [Macaca fascicularis]
Length = 210
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
>gi|291413997|ref|XP_002723251.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 210
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
>gi|3551257|dbj|BAA32827.1| 98b [Daucus carota]
Length = 502
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 37 RSSNKRTKNVKSAKK--DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
++ +R K K KK DPNKPKRP S+F +F +E RK +E P +
Sbjct: 397 KTKEERQKKQKGEKKIVDPNKPKRPASSFLLFSKEARKTISEERPGI 443
>gi|355687725|gb|EHH26309.1| hypothetical protein EGK_16239 [Macaca mulatta]
Length = 209
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
>gi|395840000|ref|XP_003792858.1| PREDICTED: high mobility group protein B2 [Otolemur garnettii]
Length = 209
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
>gi|351704050|gb|EHB06969.1| High mobility group protein B2 [Heterocephalus glaber]
Length = 156
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F ++R K EHP +
Sbjct: 43 NAPKRPPSAFFLFCSKYRPKIKSEHPGL 70
>gi|417397133|gb|JAA45600.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 208
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
>gi|8393536|ref|NP_058883.1| high mobility group protein B2 [Rattus norvegicus]
gi|293340790|ref|XP_001063065.2| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
gi|293352163|ref|XP_573272.3| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
gi|1708260|sp|P52925.2|HMGB2_RAT RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|1304193|dbj|BAA12350.1| HMG2 [Rattus norvegicus]
gi|51259308|gb|AAH78866.1| Hmgb2 protein [Rattus norvegicus]
gi|58476482|gb|AAH89854.1| Hmgb2 protein [Rattus norvegicus]
gi|77567606|gb|AAI07456.1| Hmgb2 protein [Rattus norvegicus]
gi|149032266|gb|EDL87172.1| rCG59188 [Rattus norvegicus]
Length = 210
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
>gi|351696237|gb|EHA99155.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 201
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSA F+F E+R K EHP +
Sbjct: 78 KDPNAPKRPPSA-FLFCSEYRPKIKGEHPGL 107
>gi|344254860|gb|EGW10964.1| High mobility group protein B1 [Cricetulus griseus]
Length = 186
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKR PSAFF+F E+R K E P +
Sbjct: 78 KDPNAPKRRPSAFFLFCSEYRPRIKGERPGL 108
>gi|89475586|gb|ABD73318.1| high-mobility group box 1 [Oncorhynchus mykiss]
Length = 154
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SAFF+F +FR K E P +
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETPGL 119
>gi|23394916|gb|AAN31640.1|AF484963_1 high mobility group protein 1 [Biomphalaria glabrata]
Length = 215
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 19/20 (95%)
Query: 52 DPNKPKRPPSAFFVFLEEFR 71
DPNKPKRPP+A+F+FL ++R
Sbjct: 96 DPNKPKRPPTAYFLFLADYR 115
>gi|62638360|ref|XP_574279.1| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
gi|109460525|ref|XP_001074365.1| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
Length = 209
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
>gi|148668679|gb|EDL00993.1| mCG49874 [Mus musculus]
Length = 140
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
PN PKRPPSAFF+F E R K +HP +
Sbjct: 41 PNAPKRPPSAFFLFCSENRPEIKIDHPGL 69
>gi|392592827|gb|EIW82153.1| hypothetical protein CONPUDRAFT_122772 [Coniophora puteana
RWD-64-598 SS2]
Length = 341
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 28 KRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+R ++ KR + VK +KDPN PKRP SA+ +F + R YK +PN+
Sbjct: 144 RRGVMISEGGDGRKRKREVK--EKDPNAPKRPASAYLLFQNQVRSKYKTANPNL 195
>gi|356528116|ref|XP_003532651.1| PREDICTED: high mobility group protein B2-like [Glycine max]
Length = 234
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 17 VVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFF----VFLEEFRK 72
+V +E KR SR K + D KPK+ PSAFF +F+E+FRK
Sbjct: 6 LVLRIESNEGIKRSEWQTNSRKKPKAKQKKNKQMFDAMKPKKSPSAFFPLFSLFMEDFRK 65
Query: 73 VYKQEHPNVKAVSAV 87
+++++P++K++ +
Sbjct: 66 EFQEQNPDIKSMYDI 80
>gi|149060359|gb|EDM11073.1| rCG63620 [Rattus norvegicus]
Length = 198
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 81 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 108
>gi|313225328|emb|CBY06802.1| unnamed protein product [Oikopleura dioica]
Length = 448
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 41 KRTKNVKSAKK---DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVS 85
+R N K+A+K D +PKRPPSA+F+FL++FR +K + N A S
Sbjct: 135 ERWLNEKAAEKKPKDQWRPKRPPSAYFLFLKDFRANWKIDSANDTAES 182
>gi|296199401|ref|XP_002747150.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 209
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKR PSAFF+F E K EHP +
Sbjct: 96 KDPNAPKRFPSAFFLFCSECYPKIKGEHPGL 126
>gi|444706991|gb|ELW48303.1| High mobility group protein B1 [Tupaia chinensis]
Length = 103
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/21 (76%), Positives = 18/21 (85%)
Query: 51 KDPNKPKRPPSAFFVFLEEFR 71
KDPN PKRPPSAFF+F E+R
Sbjct: 78 KDPNAPKRPPSAFFLFCSEYR 98
>gi|291415825|ref|XP_002724150.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 210
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
>gi|351715334|gb|EHB18253.1| High mobility group protein B3, partial [Heterocephalus glaber]
Length = 151
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPP FF+F EFR K +P +
Sbjct: 40 DPNAPKRPPPGFFLFFSEFRPKIKSTNPGI 69
>gi|109469081|ref|XP_001074673.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|293346414|ref|XP_002726304.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392346830|ref|XP_003749644.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 213
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSA F+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSA-FLFCSEYRPKIKGEHPAL 119
>gi|444516994|gb|ELV11325.1| High mobility group protein B1 [Tupaia chinensis]
Length = 201
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 15 NEVVKPVEDRAAGKRKAVLKASRSSNKRTK--------NVKSAKKDPNKPKRPPSAFFVF 66
+E K + + GK + + KA ++ N+R + KDPN KRPP AFF+F
Sbjct: 34 SERWKTMSAKEKGKFEDMAKADKARNEREMKTYVPPKGETRKKFKDPNASKRPPLAFFLF 93
Query: 67 LEEFRKVYKQEHPNV 81
E+ K EHP +
Sbjct: 94 CSEYHPKIKGEHPGL 108
>gi|384246550|gb|EIE20040.1| hypothetical protein COCSUDRAFT_83556 [Coccomyxa subellipsoidea
C-169]
Length = 140
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
AKK + P+RP SA+ F+ EFR+ +K +HP V VS V +
Sbjct: 13 AKKPKDAPRRPKSAYMFFMAEFREKWKVDHPEVNRVSDVGV 53
>gi|392575401|gb|EIW68534.1| hypothetical protein TREMEDRAFT_32029 [Tremella mesenterica DSM
1558]
Length = 116
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 39 SNKRTKNVKSA---KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
++K+T+ K A KKDPN PKR SA+ F++++R K +HP+V
Sbjct: 11 ASKKTETTKRAPKEKKDPNAPKRGLSAYMFFVQDYRPKIKNDHPDV 56
>gi|47522942|ref|NP_999228.1| high mobility group protein B2 [Sus scrofa]
gi|123375|sp|P17741.2|HMGB2_PIG RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|164492|gb|AAA31051.1| non-histone protein HMG2 precursor [Sus scrofa]
Length = 210
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
>gi|444714927|gb|ELW55801.1| High mobility group protein B1 [Tupaia chinensis]
Length = 167
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K+P+ P RPPSAFF+F E+ K EHP +
Sbjct: 90 KEPSAPTRPPSAFFLFCSEYCPQIKGEHPGL 120
>gi|221220042|gb|ACM08682.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SAFF+F +FR K E P +
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKVETPGL 119
>gi|196005089|ref|XP_002112411.1| hypothetical protein TRIADDRAFT_56397 [Trichoplax adhaerens]
gi|190584452|gb|EDV24521.1| hypothetical protein TRIADDRAFT_56397 [Trichoplax adhaerens]
Length = 253
Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYK 75
K DP+KPKRP +A+F FL EFRK K
Sbjct: 133 KADPDKPKRPQTAYFYFLAEFRKAMK 158
>gi|401885246|gb|EJT49369.1| nonhistone protein 6 [Trichosporon asahii var. asahii CBS 2479]
gi|406694772|gb|EKC98094.1| nonhistone protein 6 [Trichosporon asahii var. asahii CBS 8904]
Length = 108
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K KKDPNKPKR SA+ F++++R+ K E+P+
Sbjct: 13 AKRGKKDPNKPKRALSAYMFFVQDWRERIKSENPDA 48
>gi|392351997|ref|XP_003751090.1| PREDICTED: high mobility group protein B2-like, partial [Rattus
norvegicus]
Length = 154
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
>gi|357513707|ref|XP_003627142.1| HMG1/2-like protein [Medicago truncatula]
gi|355521164|gb|AET01618.1| HMG1/2-like protein [Medicago truncatula]
Length = 248
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KD N KR P+ FFVF++EFRK +K+ + + K V V
Sbjct: 201 KDSNAAKRSPTDFFVFMDEFRKTFKEANLDSKDVKRVG 238
>gi|302497713|ref|XP_003010856.1| hypothetical protein ARB_02895 [Arthroderma benhamiae CBS 112371]
gi|291174401|gb|EFE30216.1| hypothetical protein ARB_02895 [Arthroderma benhamiae CBS 112371]
Length = 106
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+++ K + V+ KKDPN PKR SA+ +F E R ++E+PN+
Sbjct: 5 KTTRKTKRGVEKKKKDPNAPKRGLSAYMIFANEQRAAVREENPNI 49
>gi|221221758|gb|ACM09540.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SAFF+F +FR K E P +
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKVETPGL 119
>gi|444720594|gb|ELW61376.1| High mobility group protein B3 [Tupaia chinensis]
Length = 124
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 8/41 (19%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVS-AVSI 89
KKD N PKRPPS FF+F EF HP +K+ + +SI
Sbjct: 13 KKDSNAPKRPPSGFFLFFSEF-------HPKIKSSNHGISI 46
>gi|444518919|gb|ELV12461.1| High mobility group protein B3 [Tupaia chinensis]
Length = 185
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K+DPN PKRPPS FF+F EF + +P +
Sbjct: 87 KRDPNAPKRPPSGFFLFCSEFCPKIRSNNPGI 118
>gi|157831385|pdb|1HSM|A Chain A, The Structure Of The Hmg Box And Its Interaction With
Dna
gi|157831386|pdb|1HSN|A Chain A, The Structure Of The Hmg Box And Its Interaction With
Dna
Length = 79
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 19/26 (73%)
Query: 56 PKRPPSAFFVFLEEFRKVYKQEHPNV 81
PKRPPSAFF+F E+R K EHP +
Sbjct: 3 PKRPPSAFFLFCSEYRPKIKGEHPGL 28
>gi|354488105|ref|XP_003506211.1| PREDICTED: FACT complex subunit SSRP1-like isoform 1 [Cricetulus
griseus]
gi|354488107|ref|XP_003506212.1| PREDICTED: FACT complex subunit SSRP1-like isoform 2 [Cricetulus
griseus]
gi|344253527|gb|EGW09631.1| FACT complex subunit SSRP1 [Cricetulus griseus]
Length = 709
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 23 DRAAGKRKAVLKA----SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 78
DR KRK + +A R S K++ K K DPN PKRP SA+ ++L R+ K +H
Sbjct: 511 DREEKKRKQLKRAKMAKDRKSRKKSSEAKKGK-DPNAPKRPMSAYMLWLNASREKIKSDH 569
Query: 79 PNV 81
P +
Sbjct: 570 PGI 572
>gi|344248925|gb|EGW05029.1| hypothetical protein I79_015964 [Cricetulus griseus]
Length = 164
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSA F+F E+R K EHP +
Sbjct: 40 KDPNAPKRPPSA-FLFCSEYRPKTKGEHPGL 69
>gi|444726553|gb|ELW67082.1| High mobility group protein B1 [Tupaia chinensis]
Length = 111
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN +R PSAFF+F E+R K EHP +
Sbjct: 39 KDPNASQRSPSAFFLFSSEYRPKIKGEHPGL 69
>gi|351710199|gb|EHB13118.1| High mobility group protein B3 [Heterocephalus glaber]
Length = 191
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 8/41 (19%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVS-AVSI 89
KKDPN KRPPS FF+F EF HP +K+ + +SI
Sbjct: 87 KKDPNATKRPPSGFFLFCSEF-------HPKIKSTNPGISI 120
>gi|332260744|ref|XP_003279440.1| PREDICTED: uncharacterized protein LOC100604184 [Nomascus
leucogenys]
Length = 414
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAV 84
KKDPN P+RP S FF+F EFR K +P +
Sbjct: 87 KKDPNAPQRPLSGFFLFCSEFRPKIKSTNPGKTGI 121
>gi|226372550|gb|ACO51900.1| High mobility group protein B2 [Rana catesbeiana]
Length = 212
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPSAFF+F E R K + P +
Sbjct: 92 DPNAPKRPPSAFFLFCSENRPQIKNDTPGL 121
>gi|327296079|ref|XP_003232734.1| non-histone chromosomal protein 6 [Trichophyton rubrum CBS
118892]
gi|326465045|gb|EGD90498.1| non-histone chromosomal protein 6 [Trichophyton rubrum CBS
118892]
Length = 102
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 38 SSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
++ K + V+ KKDPN PKR SA+ +F E R ++E+PN+
Sbjct: 7 TARKTKRGVEKKKKDPNAPKRGLSAYMIFANEQRAAVREENPNI 50
>gi|73975362|ref|XP_854557.1| PREDICTED: uncharacterized protein LOC611752 [Canis lupus
familiaris]
Length = 347
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 300 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 327
>gi|432867565|ref|XP_004071245.1| PREDICTED: nucleolar transcription factor 1-like [Oryzias latipes]
Length = 740
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Query: 22 EDRAAGKRKAVLKASRSSNKRTKNVKS-AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
ED+ KR R+++ TK S AK +P KPKRP SA F+F EE R+ +QE P+
Sbjct: 370 EDKGGFKR-----GGRANSPATKKPASKAKANPEKPKRPISAMFIFAEEKRQKLQQERPD 424
Query: 81 V 81
+
Sbjct: 425 L 425
>gi|395542387|ref|XP_003773114.1| PREDICTED: high mobility group protein B2 isoform 1 [Sarcophilus
harrisii]
gi|395542389|ref|XP_003773115.1| PREDICTED: high mobility group protein B2 isoform 2 [Sarcophilus
harrisii]
Length = 207
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCAEHRPKIKSEHPGL 120
>gi|126331239|ref|XP_001365344.1| PREDICTED: high mobility group protein B2-like [Monodelphis
domestica]
Length = 207
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCAEHRPKIKSEHPGL 120
>gi|119596659|gb|EAW76253.1| hCG2042470 [Homo sapiens]
Length = 118
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K K DPN PKRP S FF+F EF K +P +
Sbjct: 7 AKGGKNDPNAPKRPLSGFFLFCSEFCPKIKSTNPGI 42
>gi|118344004|ref|NP_001071827.1| FACT complex subunit SSRP1 [Ciona intestinalis]
gi|110287972|sp|Q4H2R2.1|SSRP1_CIOIN RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Structure-specific recognition protein 1
gi|70571284|dbj|BAE06715.1| transcription factor protein [Ciona intestinalis]
Length = 704
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
VK KKDPN PKRP SA+F++L E R +K E+ + +
Sbjct: 544 VKRKKKDPNAPKRPQSAYFLWLNENRGRFKAENKGISVTELTKL 587
>gi|444707107|gb|ELW48409.1| High mobility group protein B1 [Tupaia chinensis]
Length = 134
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA 83
T K KDP+ PKRPPSAFF F E+ ++HP + A
Sbjct: 66 TGETKKKFKDPSAPKRPPSAFFSFCSEYH-CKAKDHPGLSA 105
>gi|402889604|ref|XP_003908101.1| PREDICTED: high mobility group protein B1-like [Papio anubis]
Length = 198
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 16 EVVKPVEDRAAGKRKAVLKASRSSNKRT-------KNVKSAKKDPNKPKRPPSAFFVFLE 68
E+ K + + GK + + KA ++ +R K K KDP+ P+RPP AFFVF
Sbjct: 47 EMWKTIFAKERGKFEDMAKADKAGYEREMKTCIPPKGEKKKFKDPSAPRRPPLAFFVFCS 106
Query: 69 EFRKVYKQEHPNV 81
+ R K EHP +
Sbjct: 107 KNRPKIKGEHPGL 119
>gi|242006908|ref|XP_002424284.1| predicted protein [Pediculus humanus corporis]
gi|212507684|gb|EEB11546.1| predicted protein [Pediculus humanus corporis]
Length = 768
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAV 84
N PKRPPSA+F+++ E R K+E+PN++
Sbjct: 542 NAPKRPPSAYFIWMNENRDKLKEEYPNLQMT 572
>gi|169409528|gb|ACA57879.1| High mobility group protein B3 (predicted) [Callicebus moloch]
Length = 193
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 52 DPNKPKRPPSAFFVFLEEFR 71
DPN PKRPPS FF+F EFR
Sbjct: 89 DPNAPKRPPSGFFLFCSEFR 108
>gi|256090348|ref|XP_002581158.1| SWI/SNF-related chromatin binding protein [Schistosoma mansoni]
gi|350646061|emb|CCD59339.1| SWI/SNF-related chromatin binding protein [Schistosoma mansoni]
Length = 293
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK 82
KDP+ PKR SAFF F + FR + EHP+ K
Sbjct: 94 KDPSMPKRSWSAFFFFCDAFRSKIRSEHPDWK 125
>gi|397524101|ref|XP_003832048.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pan paniscus]
Length = 130
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K K DPN PKRP S FF+F EF K +P +
Sbjct: 19 AKGGKNDPNAPKRPLSGFFLFCSEFCPKIKSTNPGI 54
>gi|391638|dbj|BAA03261.1| ORF1 [Gallus gallus]
Length = 298
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 42 RTKNVKSAK-KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
R K V+S K KDPN PKRP SA+ ++L R+ K +HP +
Sbjct: 119 RKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGI 159
>gi|345807806|ref|XP_003435667.1| PREDICTED: high mobility group protein B1-like [Canis lupus
familiaris]
Length = 135
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN KRPPS FF+F E+R K E+P +
Sbjct: 16 KDPNALKRPPSFFFLFCSEYRPKIKGEYPGL 46
>gi|296810682|ref|XP_002845679.1| non-histone chromosomal protein 6 [Arthroderma otae CBS 113480]
gi|238843067|gb|EEQ32729.1| non-histone chromosomal protein 6 [Arthroderma otae CBS 113480]
Length = 103
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+ V+ KKDPN PKR SA+ +F E R ++E+PN+
Sbjct: 14 RGVEKKKKDPNAPKRGLSAYMIFANEQRAAVREENPNI 51
>gi|444518140|gb|ELV11977.1| High mobility group protein B3 [Tupaia chinensis]
Length = 198
Score = 39.3 bits (90), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKR PS FF+F EFR K +P +
Sbjct: 90 KDPNAPKRRPSVFFLFCSEFRLKIKSTNPGI 120
>gi|388857581|emb|CCF48730.1| related to NHP6B-nonhistone chromosomal protein [Ustilago hordei]
Length = 253
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+DP+ PKRPPSA+ +F E R+ +++HP +
Sbjct: 169 RDPDAPKRPPSAYLLFQNEVRQEIRKKHPGM 199
>gi|351708060|gb|EHB10979.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 241
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKR PSAFF+F E+ K E+P +
Sbjct: 89 KDPNAPKRLPSAFFLFCSEYHPKIKGEYPGL 119
>gi|147777965|emb|CAN70902.1| hypothetical protein VITISV_028213 [Vitis vinifera]
Length = 532
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
A DPNKPK+P S+F +F +E R+ + QE P +
Sbjct: 445 ANSDPNKPKKPASSFLLFSKEARRSFLQERPGI 477
>gi|440896783|gb|ELR48616.1| High mobility group protein B1, partial [Bos grunniens mutus]
Length = 165
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDP+ PKR PSAFF+F E+ K +HP +
Sbjct: 80 KDPSTPKRDPSAFFLFCSEYCPKVKHDHPGL 110
>gi|358255365|dbj|GAA57072.1| high mobility group protein B1, partial [Clonorchis sinensis]
Length = 778
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 19 KPVEDRAAGKRKAVLKASRSSNKRTKNVKSAK--KDPNKPKRPPSAFFVFLEEFRKVYKQ 76
K ED AA ++ K +S KS K KDPN PK+ SAFF+F + R K
Sbjct: 597 KKFEDLAAKDKERYRKEMQSYEPPADEGKSRKRKKDPNAPKKALSAFFLFCNDERPKVKA 656
Query: 77 EHPNVK 82
+HP+ K
Sbjct: 657 DHPDWK 662
>gi|343427904|emb|CBQ71429.1| related to NHP6B-nonhistone chromosomal protein [Sporisorium
reilianum SRZ2]
Length = 252
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+DP+ PKRPPSA+ +F E R+ +++HP +
Sbjct: 168 RDPDAPKRPPSAYLLFQNEVRQEIRKKHPGM 198
>gi|97976795|tpe|CAJ29302.1| TPA: putative high mobility group B3 protein [Schistosoma mansoni]
Length = 246
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK 82
KDP+ PKR SAFF F + FR + EHP+ K
Sbjct: 94 KDPSMPKRSWSAFFFFCDAFRSKIRSEHPDWK 125
>gi|294463267|gb|ADE77169.1| unknown [Picea sitchensis]
Length = 482
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN+PK+PP++F +F +E RK QE P V
Sbjct: 377 DPNRPKKPPTSFLLFSKETRKKLVQERPGV 406
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
+KDP+KPK P +AFF F E R +E+ NV ++ +
Sbjct: 247 EKDPSKPKHPVTAFFAFTNERRAALLEENHNVLQIAKI 284
>gi|358337868|dbj|GAA37121.2| high mobility group protein B1, partial [Clonorchis sinensis]
Length = 378
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK 82
KDP PKR SAFF F + FR + EHP+ K
Sbjct: 100 KDPAMPKRSWSAFFFFCDAFRSKIRNEHPDWK 131
>gi|356510782|ref|XP_003524113.1| PREDICTED: high mobility group B protein 14-like [Glycine max]
Length = 165
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA 83
+ +N R K K D K K+P S FF FLE+FRK ++ +P+VK+
Sbjct: 48 QQTNSRKKLKAKQKFDAMKQKKPLSGFFYFLEDFRKEFQVRNPDVKS 94
>gi|403295522|ref|XP_003938690.1| PREDICTED: high mobility group protein B3-like [Saimiri boliviensis
boliviensis]
Length = 202
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN KRPPS FF+F EFR K +P +
Sbjct: 89 DPNASKRPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|331220978|ref|XP_003323164.1| high mobility group protein B1 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309302154|gb|EFP78745.1| high mobility group protein B1 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 106
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 42 RTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+TK VK +KDPN PKRP SA+ F +++R+ K E+P+V
Sbjct: 23 KTKRVKK-EKDPNAPKRPLSAYMYFSQDWRERIKTENPDV 61
>gi|62660600|ref|XP_573625.1| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
gi|392333089|ref|XP_003752789.1| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
Length = 209
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 56 PKRPPSAFFVFLEEFRKVYKQEHPNV 81
PKRPPSAFF+F E R K EHP +
Sbjct: 95 PKRPPSAFFLFCSEHRPKIKSEHPGL 120
>gi|328769557|gb|EGF79601.1| hypothetical protein BATDEDRAFT_89692 [Batrachochytrium
dendrobatidis JAM81]
Length = 99
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KR + K ++KDP+ PKRP SAF +F +E R ++E+P+
Sbjct: 14 KRGDDKKKSRKDPDAPKRPLSAFMIFSKENRPRIREENPDA 54
>gi|444730168|gb|ELW70558.1| High mobility group protein B3 [Tupaia chinensis]
Length = 369
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRP S FF+F EFR K +P +
Sbjct: 89 DPNAPKRPLSGFFLFSSEFRPKIKSTNPGI 118
>gi|71024155|ref|XP_762307.1| hypothetical protein UM06160.1 [Ustilago maydis 521]
gi|46101812|gb|EAK87045.1| hypothetical protein UM06160.1 [Ustilago maydis 521]
Length = 534
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KA++ +K K + +DP+ PKRPPSA+ +F E R+ +++HP +
Sbjct: 275 KAAKKMSKLQKRKEKRLRDPDAPKRPPSAYLLFQNEVRQEIRKKHPGM 322
>gi|1083056|pir||B61611 nonhistone chromosomal protein HMG-2 - bovine (fragments)
Length = 186
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 85 NAPKRPPSAFFLFSAEHRPKIKAEHPGL 112
>gi|444726552|gb|ELW67081.1| High mobility group protein B1 [Tupaia chinensis]
Length = 126
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN +R PSAFF+F E+R K EHP +
Sbjct: 90 KDPNASQRSPSAFFLFSSEYRPKIKGEHPGL 120
>gi|444732551|gb|ELW72841.1| High mobility group protein B3 [Tupaia chinensis]
Length = 437
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKR PS FF+F EFR K +P +
Sbjct: 38 DPNAPKRSPSGFFLFCSEFRPKIKPTNPGI 67
>gi|443899697|dbj|GAC77026.1| isocitrate dehydrogenase, alpha subunit [Pseudozyma antarctica
T-34]
Length = 308
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+DP+ PKRPPSA+ +F E R+ +++HP +
Sbjct: 225 RDPDAPKRPPSAYLLFQNEVRQEIRKKHPGL 255
>gi|148696675|gb|EDL28622.1| mCG11166 [Mus musculus]
Length = 160
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 43 NAPKRPPSAFFLFCSENRPKIKIEHPGL 70
>gi|350409390|ref|XP_003488719.1| PREDICTED: FACT complex subunit Ssrp1-like [Bombus impatiens]
Length = 736
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
+KD NKPKRPP+AF ++L R+ K E+P + AV+ ++
Sbjct: 543 EKDANKPKRPPTAFMIWLNSARERIKAENPGI-AVTEIA 580
>gi|340713595|ref|XP_003395326.1| PREDICTED: FACT complex subunit Ssrp1-like [Bombus terrestris]
Length = 735
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
+KD NKPKRPP+AF ++L R+ K E+P + AV+ ++
Sbjct: 543 EKDANKPKRPPTAFMIWLNSARERIKAENPGI-AVTEIA 580
>gi|325181980|emb|CCA16434.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 204
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
KKDP+ PKR SA+F F E R +QE+P+ K S+
Sbjct: 107 KKDPDAPKRALSAYFFFCNEARDALRQENPDKKITEIASL 146
>gi|395847762|ref|XP_003796535.1| PREDICTED: high mobility group protein B3-like [Otolemur garnettii]
Length = 255
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVS-AVSI 89
KKDPN P RPPS F +F EF HP +K+ + +SI
Sbjct: 110 KKDPNAPTRPPSGFCLFCSEF-------HPKIKSTNPGISI 143
>gi|401624308|gb|EJS42370.1| abf2p [Saccharomyces arboricola H-6]
Length = 183
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 6/52 (11%)
Query: 31 AVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK 82
A+LKAS+ + R + +K PKRP SA+F+FL++ R + +E+P ++
Sbjct: 24 ALLKASKRTQLRNELIKQG------PKRPTSAYFLFLQDHRSQFVKENPTLR 69
>gi|225426010|ref|XP_002273198.1| PREDICTED: high mobility group B protein 13-like [Vitis vinifera]
Length = 505
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
A DPNKPK+P S+F +F +E R + QE P +
Sbjct: 418 ANSDPNKPKKPASSFLLFSKEARNSFLQERPGI 450
>gi|389744341|gb|EIM85524.1| hypothetical protein STEHIDRAFT_140142 [Stereum hirsutum FP-91666
SS1]
Length = 315
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 27 GKRKA--VLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
GKRKA V A +K+ + KDPN PKRP S++ F E R KQE P +
Sbjct: 96 GKRKAGEVDGAVEDGSKKKRGPIKKPKDPNAPKRPASSYIYFQNEIRNQLKQEFPTI 152
>gi|334348387|ref|XP_003342057.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B3
[Monodelphis domestica]
Length = 208
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KD N PK PPS FF+F EFR K +P +
Sbjct: 88 KDSNAPKHPPSGFFLFCSEFRPKIKSTNPGI 118
>gi|195025405|ref|XP_001986052.1| GH21151 [Drosophila grimshawi]
gi|193902052|gb|EDW00919.1| GH21151 [Drosophila grimshawi]
Length = 744
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAV 84
KKD NKPKRP +AF ++L + R+ K+++P +K
Sbjct: 554 KKDSNKPKRPTTAFMLWLNDTREQIKRDNPGIKVT 588
>gi|6624099|gb|AAF19244.1|AC007277_1 similar to nonhistone chromosomal protein HMG-1 [Homo sapiens];
probable pseudogene; similar to P09429 (PID:g123369)
[Homo sapiens]
Length = 191
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+D N PKRPPSAF +F E+ K EHP +
Sbjct: 90 EDSNAPKRPPSAFLLFCSEYCPKIKGEHPGL 120
>gi|242064692|ref|XP_002453635.1| hypothetical protein SORBIDRAFT_04g009610 [Sorghum bicolor]
gi|241933466|gb|EES06611.1| hypothetical protein SORBIDRAFT_04g009610 [Sorghum bicolor]
Length = 488
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 41 KRTKNVKSAKK----DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K+TK + KK DPN+PKRP S+F +F +E RK +E P +
Sbjct: 394 KKTKENRQKKKQENADPNRPKRPASSFLLFSKEARKQLLEERPGI 438
>gi|74153177|dbj|BAB27638.3| unnamed protein product [Mus musculus]
Length = 191
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSENRPKIKIEHPGL 120
>gi|326475470|gb|EGD99479.1| nucleosome binding protein [Trichophyton tonsurans CBS 112818]
Length = 102
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
V+ KKDPN PKR SA+ +F E R ++E+PN+
Sbjct: 15 VEKKKKDPNAPKRGLSAYMIFANEQRAAVREENPNI 50
>gi|56756178|gb|AAW26264.1| SJCHGC08557 protein [Schistosoma japonicum]
Length = 177
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK 82
KDP+ PKR SAFF F + FR + EHP+ K
Sbjct: 94 KDPSMPKRSWSAFFFFCDAFRSKIRSEHPDWK 125
>gi|189256|gb|AAC15850.1| non-histone chromosomal protein [Homo sapiens]
Length = 109
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 52 DPNKPKRPPSAFFVFLEEFR 71
DPN PKRPPS FF+F EFR
Sbjct: 89 DPNAPKRPPSGFFLFCSEFR 108
>gi|57524786|ref|NP_001005796.1| FACT complex subunit SSRP1 [Gallus gallus]
gi|110283005|sp|Q04678.2|SSRP1_CHICK RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; AltName: Full=T160
gi|53128417|emb|CAG31300.1| hypothetical protein RCJMB04_4n20 [Gallus gallus]
Length = 706
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 42 RTKNVKSAK-KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
R K V+S K KDPN PKRP SA+ ++L R+ K +HP +
Sbjct: 530 RKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGI 570
>gi|392877702|gb|AFM87683.1| high mobility group box 3 [Callorhinchus milii]
Length = 203
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKRPPS FF+F + R K P +
Sbjct: 87 KKDPNAPKRPPSGFFLFCSDHRPKIKAGSPGL 118
>gi|218117885|dbj|BAH03305.1| structure-specific recognition protein 1 [Gallus gallus]
Length = 706
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 42 RTKNVKSAK-KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
R K V+S K KDPN PKRP SA+ ++L R+ K +HP +
Sbjct: 530 RKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGI 570
>gi|387914026|gb|AFK10622.1| high mobility group box 3 [Callorhinchus milii]
Length = 210
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKRPPS FF+F + R K P +
Sbjct: 94 KKDPNAPKRPPSGFFLFCSDHRPKIKAGSPGL 125
>gi|326920276|ref|XP_003206400.1| PREDICTED: FACT complex subunit SSRP1-like [Meleagris gallopavo]
Length = 706
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 42 RTKNVKSAK-KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
R K V+S K KDPN PKRP SA+ ++L R+ K +HP +
Sbjct: 530 RKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGI 570
>gi|403267258|ref|XP_003925761.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Saimiri boliviensis boliviensis]
Length = 227
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DP+ PKRPPS FF+F EF K +P +
Sbjct: 139 DPDAPKRPPSGFFLFCSEFCPKIKSTNPGI 168
>gi|301097589|ref|XP_002897889.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262106637|gb|EEY64689.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 210
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
KKDPN PKR SA+F F + R+ + E+PN K ++
Sbjct: 111 KKDPNAPKRALSAYFFFCNDIRQEVRDENPNKKITEIATL 150
>gi|62362190|gb|AAX81532.1| amphiHMG1/2-like protein [Adineta ricciae]
Length = 142
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K A KDPN PKRP SAFF+F ++ R K++ P++
Sbjct: 9 KKASKDPNAPKRPLSAFFLFSQDERPDIKKKSPSL 43
>gi|74185387|dbj|BAE30167.1| unnamed protein product [Mus musculus]
Length = 181
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSENRPKIKIEHPGL 120
>gi|6680229|ref|NP_032278.1| high mobility group protein B2 [Mus musculus]
gi|1708259|sp|P30681.3|HMGB2_MOUSE RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|609169|emb|CAA86727.1| high mobility group 2 protein [Mus musculus]
gi|12834643|dbj|BAB22988.1| unnamed protein product [Mus musculus]
gi|12842629|dbj|BAB25672.1| unnamed protein product [Mus musculus]
gi|12849395|dbj|BAB28323.1| unnamed protein product [Mus musculus]
gi|52789313|gb|AAH83108.1| High mobility group box 2 [Mus musculus]
gi|55777186|gb|AAH46759.1| High mobility group box 2 [Mus musculus]
gi|74179666|dbj|BAE22481.1| unnamed protein product [Mus musculus]
gi|74179668|dbj|BAE22482.1| unnamed protein product [Mus musculus]
gi|74226660|dbj|BAE26982.1| unnamed protein product [Mus musculus]
Length = 210
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSENRPKIKIEHPGL 120
>gi|11527222|gb|AAG36939.1|AF267733_1 high mobility group protein B2 [Mus musculus]
gi|12805183|gb|AAH02050.1| High mobility group box 2 [Mus musculus]
gi|74150328|dbj|BAE32214.1| unnamed protein product [Mus musculus]
gi|148672860|gb|EDL04807.1| mCG4647 [Mus musculus]
Length = 210
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSENRPKIKIEHPGL 120
>gi|356523473|ref|XP_003530363.1| PREDICTED: high mobility group B protein 13-like isoform 2 [Glycine
max]
Length = 467
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 32 VLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+LK + KN DPN+PK+P S+F +F +E RK ++E P +
Sbjct: 361 LLKKKEKTENIIKNKDDKNSDPNRPKKPASSFILFSKEARKTLQEERPGI 410
>gi|281339988|gb|EFB15572.1| hypothetical protein PANDA_018974 [Ailuropoda melanoleuca]
Length = 212
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 56 PKRPPSAFFVFLEEFRKVYKQEHPNV 81
PK PPSAFF+F E+R K EHP++
Sbjct: 108 PKSPPSAFFLFCSEYRPKIKGEHPSL 133
>gi|346468357|gb|AEO34023.1| hypothetical protein [Amblyomma maculatum]
Length = 734
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
++D NKPKRPPSA+F++L E R K+++P+
Sbjct: 555 ERDANKPKRPPSAYFLWLAENRDKIKKDNPS 585
>gi|365759088|gb|EHN00901.1| Abf2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 185
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 6 GKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFV 65
G + + ++ KP+ + ++ +LKAS+ + R + +K PKRP SA+F+
Sbjct: 5 GYSLLSRSFHQSTKPLFNLSS----ILLKASKRTQLRNELIKQG------PKRPTSAYFL 54
Query: 66 FLEEFRKVYKQEHPNVK 82
FL++ R + +E+P ++
Sbjct: 55 FLQDHRSQFAKENPTLR 71
>gi|402882719|ref|XP_003904882.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Papio anubis]
Length = 132
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K DPN PKRP S FF+F EF K +P +
Sbjct: 24 KNDPNAPKRPLSGFFLFCSEFHPKMKSTNPGI 55
>gi|401838192|gb|EJT41931.1| ABF2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 185
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 6 GKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFV 65
G + + ++ KP+ + ++ +LKAS+ + R + +K PKRP SA+F+
Sbjct: 5 GYSLLSRSFHQSTKPLFNLSS----ILLKASKRTQLRNELIKQG------PKRPTSAYFL 54
Query: 66 FLEEFRKVYKQEHPNVK 82
FL++ R + +E+P ++
Sbjct: 55 FLQDHRSQFAKENPTLR 71
>gi|332017611|gb|EGI58308.1| Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat
subunit A [Acromyrmex echinatior]
Length = 1249
Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 28 KRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KR A A+ ++ RTK K A +D P++P S +F+FL + R+ + ++P++
Sbjct: 51 KRSAT--ATGNTPNRTKKRKKAPRDATAPRQPLSGYFLFLNDRREKVRNQNPSL 102
>gi|58268918|ref|XP_571615.1| nonhistone protein 6 [Cryptococcus neoformans var. neoformans
JEC21]
gi|134112618|ref|XP_774852.1| hypothetical protein CNBF0170 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818300|sp|P0CO25.1|NHP6_CRYNB RecName: Full=Non-histone chromosomal protein 6
gi|338818301|sp|P0CO24.1|NHP6_CRYNJ RecName: Full=Non-histone chromosomal protein 6
gi|50257500|gb|EAL20205.1| hypothetical protein CNBF0170 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227850|gb|AAW44308.1| nonhistone protein 6, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 116
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
K KKDPNKPKR SA+ F++++R+ K E+P
Sbjct: 19 KRTKKDPNKPKRALSAYMFFVQDYRERIKTENP 51
>gi|358055994|dbj|GAA98339.1| hypothetical protein E5Q_05024 [Mixia osmundae IAM 14324]
Length = 615
Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 40 NKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+KR K K A+ DPN PKRPPSA+ +F R+ + P++
Sbjct: 357 DKRAKKRKVAR-DPNAPKRPPSAYLMFQNTVRQAMRDADPSI 397
>gi|321259756|ref|XP_003194598.1| nonhistone protein 6 [Cryptococcus gattii WM276]
gi|317461070|gb|ADV22811.1| Nonhistone protein 6, putative [Cryptococcus gattii WM276]
Length = 110
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+KKDPNKPKR SA+ F++++R+ K E+P
Sbjct: 21 SKKDPNKPKRALSAYMFFVQDYRERIKAENPEA 53
>gi|403307003|ref|XP_003944004.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Saimiri boliviensis boliviensis]
Length = 94
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K DPN PKRPPS F+F EF K +P +
Sbjct: 48 KDDPNAPKRPPSGLFLFCLEFCPKIKSTNPGI 79
>gi|348680492|gb|EGZ20308.1| hypothetical protein PHYSODRAFT_285400 [Phytophthora sojae]
Length = 211
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
KKDPN PKR SA+F F + R+ + E+PN K ++
Sbjct: 107 KKDPNAPKRALSAYFFFCNDIRQEVRDENPNKKITEIATL 146
>gi|171848939|pdb|2YQI|A Chain A, Solution Structure Of The Second Hmg-Box Domain From
High Mobility Group Protein B3
Length = 81
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 48 SAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
S+ N PKRPPS FF+F EFR K +P +
Sbjct: 2 SSGSSGNAPKRPPSGFFLFCSEFRPKIKSTNPGI 35
>gi|111154063|ref|NP_892035.2| FACT complex subunit SSRP1 [Mus musculus]
gi|209862973|ref|NP_001129553.1| FACT complex subunit SSRP1 [Mus musculus]
gi|110283006|sp|Q08943.2|SSRP1_MOUSE RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; AltName: Full=T160
gi|74138726|dbj|BAE27178.1| unnamed protein product [Mus musculus]
gi|74144584|dbj|BAE27280.1| unnamed protein product [Mus musculus]
gi|74144625|dbj|BAE27299.1| unnamed protein product [Mus musculus]
gi|74177273|dbj|BAE34555.1| unnamed protein product [Mus musculus]
Length = 708
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 23 DRAAGKRKAVLKASRSSNKRTKNVKSA---KKDPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
DR KR+ + +A + +++++ S KDPN PKRP SA+ ++L R+ K +HP
Sbjct: 511 DREEKKREQLKRAKMAKDRKSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP 570
Query: 80 NV 81
+
Sbjct: 571 GI 572
>gi|427788863|gb|JAA59883.1| Putative nucleosome-binding factor spn pob3 subunit [Rhipicephalus
pulchellus]
Length = 734
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
++D NKPKRPPSA+F++L E R+ K+++P
Sbjct: 555 ERDANKPKRPPSAYFLWLAENREKIKKDNPG 585
>gi|27502780|gb|AAH42502.1| Ssrp1 protein [Mus musculus]
Length = 711
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 23 DRAAGKRKAVLKASRSSNKRTKNVKSA---KKDPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
DR KR+ + +A + +++++ S KDPN PKRP SA+ ++L R+ K +HP
Sbjct: 511 DREEKKREQLKRAKMAKDRKSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP 570
Query: 80 NV 81
+
Sbjct: 571 GI 572
>gi|8170740|gb|AAB19500.2| HMG1-related DNA-binding protein [Mus sp.]
Length = 708
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 23 DRAAGKRKAVLKASRSSNKRTKNVKSA---KKDPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
DR KR+ + +A + +++++ S KDPN PKRP SA+ ++L R+ K +HP
Sbjct: 511 DREEKKREQLKRAKMAKDRKSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP 570
Query: 80 NV 81
+
Sbjct: 571 GI 572
>gi|431918516|gb|ELK17735.1| 182 kDa tankyrase-1-binding protein [Pteropus alecto]
Length = 2600
Score = 38.1 bits (87), Expect = 0.60, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 33 LKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+ R S K+ VK K DPN PKRP SA+ ++L R+ K +HP +
Sbjct: 525 MAKDRKSRKKPTEVKKGK-DPNAPKRPMSAYMLWLNASREKIKLDHPGI 572
>gi|386783721|gb|AFJ24755.1| high mobility group-2 [Schmidtea mediterranea]
Length = 192
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK 82
+K K KDPNKPK P +AFF F E R+ K+++P K
Sbjct: 85 SKKAKREAKDPNKPKAPLTAFFFFSNEHRQTVKEKNPEFK 124
>gi|297665615|ref|XP_002811141.1| PREDICTED: high mobility group protein B4 [Pongo abelii]
Length = 189
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVS 85
K K K+DP P+RPPS+F +F ++ K+E+PN V
Sbjct: 81 KTKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVVQ 122
>gi|156837652|ref|XP_001642846.1| hypothetical protein Kpol_376p1 [Vanderwaltozyma polyspora DSM
70294]
gi|156113421|gb|EDO14988.1| hypothetical protein Kpol_376p1 [Vanderwaltozyma polyspora DSM
70294]
Length = 93
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 33 LKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+ A R S KRT KKDPN PKR SA+ F E R + + E+P+V
Sbjct: 1 MAAPRESKKRTTR---RKKDPNAPKRALSAYMFFANETRDIVRAENPDV 46
>gi|426397135|ref|XP_004064781.1| PREDICTED: high mobility group protein B3-like [Gorilla gorilla
gorilla]
Length = 221
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN KRP S FF+F EFR K +P +
Sbjct: 106 KKDPNALKRPLSGFFLFCSEFRPKIKSTNPGI 137
>gi|116283314|gb|AAH04848.1| Ssrp1 protein [Mus musculus]
Length = 633
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 23 DRAAGKRKAVLKASRSSNKRTKNVKSA---KKDPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
DR KR+ + +A + +++++ S KDPN PKRP SA+ ++L R+ K +HP
Sbjct: 511 DREEKKREQLKRAKMAKDRKSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP 570
Query: 80 NV 81
+
Sbjct: 571 GI 572
>gi|444520312|gb|ELV12956.1| High mobility group protein B1 [Tupaia chinensis]
Length = 150
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPP AFF+F E+ K +HP +
Sbjct: 78 KDPNVPKRPPLAFFLFCFEYCPKIKGKHPGL 108
>gi|348509013|ref|XP_003442046.1| PREDICTED: nucleolar transcription factor 1-like [Oreochromis
niloticus]
Length = 740
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 22 EDRAAGKRKAVLKASRSSNK---RTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 78
+ R G+ K K S +N + KN K A +P KPKRP SA F+F EE R +QE
Sbjct: 364 QQRVLGEAKTGFKKSTGANSPASKKKNSK-ANANPEKPKRPISAMFIFAEEKRPKLQQER 422
Query: 79 PNV 81
P +
Sbjct: 423 PEL 425
>gi|301786997|ref|XP_002928914.1| PREDICTED: high mobility group protein B1-like [Ailuropoda
melanoleuca]
Length = 228
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 56 PKRPPSAFFVFLEEFRKVYKQEHPNV 81
PK PPSAFF+F E+R K EHP++
Sbjct: 108 PKSPPSAFFLFCSEYRPKIKGEHPSL 133
>gi|302684321|ref|XP_003031841.1| hypothetical protein SCHCODRAFT_76744 [Schizophyllum commune
H4-8]
gi|300105534|gb|EFI96938.1| hypothetical protein SCHCODRAFT_76744 [Schizophyllum commune
H4-8]
Length = 114
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+++ K K + AKKDPN PKR SA+ F +++R+ K E+P+
Sbjct: 12 KAATKSEKTPRKAKKDPNAPKRALSAYMFFSQDWRERVKAENPDA 56
>gi|405121060|gb|AFR95829.1| nonhistone protein 6 [Cryptococcus neoformans var. grubii H99]
Length = 116
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
K KKDPNKPKR SA+ F++++R+ K E+P
Sbjct: 19 KRTKKDPNKPKRALSAYMFFVQDYRERIKAENP 51
>gi|297742312|emb|CBI34461.3| unnamed protein product [Vitis vinifera]
Length = 386
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
A DPNKPK+P S+F +F +E R + QE P +
Sbjct: 299 ANSDPNKPKKPASSFLLFSKEARNSFLQERPGI 331
>gi|444716280|gb|ELW57133.1| High mobility group protein B1 [Tupaia chinensis]
Length = 149
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKR P AFF+F E+ K E+P++
Sbjct: 28 KDPNTPKRTPRAFFLFCFEYHPKIKGEYPDL 58
>gi|351707228|gb|EHB10147.1| FACT complex subunit SSRP1 [Heterocephalus glaber]
Length = 709
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 29 RKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
++A + R S K+T K K DPN PKRP SA+ ++L R+ K +HP +
Sbjct: 521 KRAKVAKDRKSRKKTVEAKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI 572
>gi|110766132|ref|XP_001120264.1| PREDICTED: FACT complex subunit Ssrp1 [Apis mellifera]
Length = 728
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
+KD NKPKRPP+AF ++L R+ K E+P + AV+ ++
Sbjct: 543 EKDTNKPKRPPTAFMMWLNSARERIKAENPGI-AVTEIA 580
>gi|125538867|gb|EAY85262.1| hypothetical protein OsI_06634 [Oryza sativa Indica Group]
Length = 504
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
DPN+PK+P S+F +F +E R+ +E P V + + ++
Sbjct: 410 DPNRPKKPASSFLLFSKEARRQLAEERPGVASSTLTAL 447
>gi|444725503|gb|ELW66067.1| Trem-like transcript 1 protein [Tupaia chinensis]
Length = 668
Score = 38.1 bits (87), Expect = 0.75, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKR PS FF+F EFR K +P +
Sbjct: 586 DPNAPKRRPSVFFLFCSEFRLKIKSTNPGI 615
>gi|403217000|emb|CCK71495.1| hypothetical protein KNAG_0H00800 [Kazachstania naganishii CBS
8797]
Length = 118
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 22/37 (59%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
K V KKDPN PKR SA+ F E R + K E+PN
Sbjct: 33 KRVTRKKKDPNAPKRSMSAYMFFANENRDIVKSENPN 69
>gi|145349350|ref|XP_001419099.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579330|gb|ABO97392.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 306
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVK 82
P KPKR P+A+ +F EE R +QE P++K
Sbjct: 215 PGKPKRAPTAYLIFAEELRARIRQERPHLK 244
>gi|321476548|gb|EFX87508.1| hypothetical protein DAPPUDRAFT_306496 [Daphnia pulex]
Length = 191
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
KDPN PKR SAFF F + R K++HP
Sbjct: 97 KDPNAPKRSLSAFFWFCHDLRGHVKEQHP 125
>gi|392879586|gb|AFM88625.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F R ++E P +
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGL 136
>gi|324526583|gb|ADY48692.1| High mobility group protein 1.2, partial [Ascaris suum]
Length = 248
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK 82
K KKDPN PKR SAFF F + R +Q+HP K
Sbjct: 128 KRVKKDPNAPKRALSAFFFFSHDKRPEVQQQHPEWK 163
>gi|297265082|ref|XP_001112681.2| PREDICTED: nuclear autoantigen Sp-100 isoform 9 [Macaca mulatta]
Length = 838
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
KDP+ P+RPP AFF+F + R K EHP + V
Sbjct: 729 KDPSAPRRPPLAFFMFCSKNRPKIKGEHPGLSIDGVV 765
>gi|260824573|ref|XP_002607242.1| hypothetical protein BRAFLDRAFT_130806 [Branchiostoma floridae]
gi|229292588|gb|EEN63252.1| hypothetical protein BRAFLDRAFT_130806 [Branchiostoma floridae]
Length = 334
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Query: 31 AVLKASRSSNKRTKNVKSAK-KDPNKPKRPPSAFFVFLEEFR----KVYKQEH 78
A + SS K+ K KS K KDPN PK+P +AFF+F ++ R + Y +EH
Sbjct: 163 ATMALQASSKKKHKQPKSEKEKDPNAPKKPANAFFMFCQQRRSQVQESYYKEH 215
>gi|315051466|ref|XP_003175107.1| non-histone chromosomal protein 6 [Arthroderma gypseum CBS
118893]
gi|311340422|gb|EFQ99624.1| non-histone chromosomal protein 6 [Arthroderma gypseum CBS
118893]
Length = 102
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 37 RSSNKRTK-NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+S+ ++TK V+ KKDPN PKR SA+ +F E R ++E+P++
Sbjct: 5 KSTTRKTKRGVEKKKKDPNAPKRGLSAYMIFANEQRASVREENPSI 50
>gi|392876654|gb|AFM87159.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F R ++E P +
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGL 136
>gi|119491564|ref|XP_001263303.1| nucleosome binding protein (Nhp6a), putative [Neosartorya
fischeri NRRL 181]
gi|119411463|gb|EAW21406.1| nucleosome binding protein (Nhp6a), putative [Neosartorya
fischeri NRRL 181]
Length = 104
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 38 SSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
S+ +TK V+ KKDPN PKR SA+ F E R ++E+P +
Sbjct: 7 STRTKTKRVERKKKDPNAPKRGLSAYMFFANENRDKVREENPGI 50
>gi|211520|gb|AAA48685.1| HMG box (bp. 1499..1757), partial [Gallus gallus]
Length = 669
Score = 37.7 bits (86), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 42 RTKNVKSAK-KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
R K V+S K KDPN PKRP SA+ ++L R+ K +HP +
Sbjct: 493 RKKQVESKKGKDPNVPKRPMSAYMLWLNANREKIKSDHPGI 533
>gi|353241760|emb|CCA73553.1| hypothetical protein PIIN_07506 [Piriformospora indica DSM 11827]
Length = 312
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSA+ ++ RK K ++P +
Sbjct: 113 KDPNAPKRPPSAYLLYQNAIRKEIKDKNPTM 143
>gi|339242839|ref|XP_003377345.1| high mobility group protein 1.2 [Trichinella spiralis]
gi|316973861|gb|EFV57410.1| high mobility group protein 1.2 [Trichinella spiralis]
Length = 229
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK 82
K +KKDPN PKR SAFF F R +Q HP+ K
Sbjct: 115 KRSKKDPNAPKRALSAFFFFSNSKRAEIQQAHPDWK 150
>gi|170591488|ref|XP_001900502.1| High mobility group protein 1.2 [Brugia malayi]
gi|158592114|gb|EDP30716.1| High mobility group protein 1.2, putative [Brugia malayi]
Length = 235
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK 82
K KKDPN PKR SAFF F + R +Q+HP K
Sbjct: 106 KRVKKDPNAPKRALSAFFFFSHDKRPEVQQQHPEWK 141
>gi|70999478|ref|XP_754458.1| nucleosome binding protein (Nhp6a) [Aspergillus fumigatus Af293]
gi|74674416|sp|Q4WY33.1|NHP6_ASPFU RecName: Full=Non-histone chromosomal protein 6
gi|66852095|gb|EAL92420.1| nucleosome binding protein (Nhp6a), putative [Aspergillus
fumigatus Af293]
gi|159127475|gb|EDP52590.1| nucleosome binding protein (Nhp6a), putative [Aspergillus
fumigatus A1163]
Length = 104
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 38 SSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
S+ +TK V+ KKDPN PKR SA+ F E R ++E+P +
Sbjct: 7 STRTKTKRVERKKKDPNAPKRGLSAYMFFANENRDKVREENPGI 50
>gi|432117313|gb|ELK37700.1| Putative high mobility group protein B3-like protein [Myotis
davidii]
Length = 147
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
KK+PN PKRP S FF+F EFR K +P
Sbjct: 86 KKEPNVPKRPTSGFFLFCSEFRPKIKSTNPG 116
>gi|170585494|ref|XP_001897518.1| HMG box family protein [Brugia malayi]
gi|158595065|gb|EDP33640.1| HMG box family protein [Brugia malayi]
Length = 364
Score = 37.7 bits (86), Expect = 0.84, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
+ + +++RT K KKDPN+P++P SA+ +F + + K PN
Sbjct: 82 QVTSRTSRRTIRKKRPKKDPNEPQKPVSAYALFFRDTQATIKGRSPN 128
>gi|351712970|gb|EHB15889.1| FACT complex subunit SSRP1 [Heterocephalus glaber]
Length = 677
Score = 37.7 bits (86), Expect = 0.85, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 29 RKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+KA + +K+T VK K DP+ P++P SA+ ++L R++ K EHP +
Sbjct: 520 KKAKMAKDPKGHKKTVEVKKGK-DPSVPEQPLSAYVLWLNASREMIKSEHPGI 571
>gi|387914724|gb|AFK10971.1| high mobility group box 1 [Callorhinchus milii]
Length = 226
Score = 37.7 bits (86), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F R ++E P +
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGL 136
>gi|392876858|gb|AFM87261.1| high mobility group protein [Callorhinchus milii]
gi|392878442|gb|AFM88053.1| high mobility group protein [Callorhinchus milii]
gi|392880194|gb|AFM88929.1| high mobility group protein [Callorhinchus milii]
gi|392881188|gb|AFM89426.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F R ++E P +
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGL 136
>gi|270014157|gb|EFA10605.1| hypothetical protein TcasGA2_TC012866 [Tribolium castaneum]
Length = 840
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK 82
KD NKPKRP +AF ++L E R K ++P +K
Sbjct: 676 KDENKPKRPSTAFMLWLNEMRDKIKADNPGIK 707
>gi|392884154|gb|AFM90909.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F R ++E P +
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGL 136
>gi|392878936|gb|AFM88300.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F R ++E P +
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGL 136
>gi|390348241|ref|XP_784026.3| PREDICTED: uncharacterized protein LOC578784 [Strongylocentrotus
purpuratus]
Length = 273
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 20/22 (90%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRK 72
+DP+KPK+PP+A+F FL +FR+
Sbjct: 104 RDPDKPKKPPTAYFYFLTDFRE 125
>gi|72051831|ref|XP_792040.1| PREDICTED: high mobility group protein 1 homolog
[Strongylocentrotus purpuratus]
gi|115767180|ref|XP_001176807.1| PREDICTED: high mobility group protein 1 homolog
[Strongylocentrotus purpuratus]
Length = 204
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
AKKDP+ PKR SAFF+F + R KQEH +
Sbjct: 91 AKKDPDAPKRNLSAFFLFSRDERGAIKQEHKD 122
>gi|91091374|ref|XP_973014.1| PREDICTED: similar to AGAP012335-PA [Tribolium castaneum]
Length = 712
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK 82
KD NKPKRP +AF ++L E R K ++P +K
Sbjct: 548 KDENKPKRPSTAFMLWLNEMRDKIKADNPGIK 579
>gi|47497872|dbj|BAD20056.1| putative embryogenic callus protein 98b [Oryza sativa Japonica
Group]
gi|50252043|dbj|BAD27975.1| putative embryogenic callus protein 98b [Oryza sativa Japonica
Group]
gi|125581537|gb|EAZ22468.1| hypothetical protein OsJ_06136 [Oryza sativa Japonica Group]
Length = 504
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
DPN+PK+P S+F +F +E R+ +E P V + + ++
Sbjct: 410 DPNRPKKPASSFLLFSKEARRQLAEERPGVASSTLTAL 447
>gi|313224350|emb|CBY20139.1| unnamed protein product [Oikopleura dioica]
Length = 91
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
AKKDPN PKRP +AFF+F + R K+ P VS V+
Sbjct: 4 AKKDPNAPKRPQTAFFLFAADNRADAKKCLPEGSRVSEVA 43
>gi|226530710|ref|NP_001144208.1| hypothetical protein [Zea mays]
gi|195638446|gb|ACG38691.1| hypothetical protein [Zea mays]
gi|413936487|gb|AFW71038.1| hypothetical protein ZEAMMB73_874920 [Zea mays]
Length = 487
Score = 37.7 bits (86), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN+PKRP S+F +F +E RK +E P +
Sbjct: 408 DPNRPKRPASSFLLFSKEERKQLIEERPGI 437
>gi|203465|gb|AAA40927.1| HMG box (bp. 1168..1428), partial [Rattus norvegicus]
Length = 561
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 23 DRAAGKRKAVLKASRSSNKRTKNVKSAKK---DPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
DR KRK + +A + +++++ S K DPN PKRP SA+ ++L R+ K +HP
Sbjct: 363 DREEKKRKQLKRAKMAKDRKSRKKSSEGKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP 422
Query: 80 NV 81
+
Sbjct: 423 GI 424
>gi|320168039|gb|EFW44938.1| hypothetical protein CAOG_02944 [Capsaspora owczarzaki ATCC
30864]
Length = 193
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
+KDPNKPK+P +AF F R+ K ++P +K S+
Sbjct: 9 EKDPNKPKKPTTAFMYFSNAMRERVKTQNPGLKMTDIASV 48
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 51 KDPNKPKRPPSAFFVFLE----EFRKVY 74
KDPN PKRPPSA+ F E RK Y
Sbjct: 97 KDPNAPKRPPSAYICFANAVRPELRKTY 124
>gi|54020668|ref|NP_112383.1| FACT complex subunit SSRP1 [Rattus norvegicus]
gi|83305804|sp|Q04931.2|SSRP1_RAT RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; AltName: Full=T160
gi|53734496|gb|AAH83588.1| Structure specific recognition protein 1 [Rattus norvegicus]
gi|149022436|gb|EDL79330.1| structure specific recognition protein 1, isoform CRA_a [Rattus
norvegicus]
gi|149022437|gb|EDL79331.1| structure specific recognition protein 1, isoform CRA_a [Rattus
norvegicus]
Length = 709
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 23 DRAAGKRKAVLKASRSSNKRTKNVKSAKK---DPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
DR KRK + +A + +++++ S K DPN PKRP SA+ ++L R+ K +HP
Sbjct: 511 DREEKKRKQLKRAKMAKDRKSRKKSSEGKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP 570
Query: 80 NV 81
+
Sbjct: 571 GI 572
>gi|397475678|ref|XP_003809257.1| PREDICTED: high mobility group protein B3-like [Pan paniscus]
Length = 165
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DP+ PKRPPS FF+F E R K +P +
Sbjct: 66 DPSAPKRPPSGFFLFSSEIRPKIKSTNPGI 95
>gi|356523471|ref|XP_003530362.1| PREDICTED: high mobility group B protein 13-like isoform 1 [Glycine
max]
Length = 478
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN+PK+P S+F +F +E RK ++E P +
Sbjct: 392 DPNRPKKPASSFILFSKEARKTLQEERPGI 421
>gi|326499588|dbj|BAJ86105.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 538
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN+PK+P S+F +F +E RK +E P V
Sbjct: 455 DPNRPKKPASSFLLFSKEARKQLAEERPGV 484
>gi|302411796|ref|XP_003003731.1| nucleosome binding protein [Verticillium albo-atrum VaMs.102]
gi|261357636|gb|EEY20064.1| nucleosome binding protein [Verticillium albo-atrum VaMs.102]
gi|346978438|gb|EGY21890.1| nucleosome binding protein [Verticillium dahliae VdLs.17]
Length = 102
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K K AKKDPN PKR SA+ F E R+ ++E+P +
Sbjct: 13 KKAKRAKKDPNAPKRGLSAYMFFANEQRENVREENPGI 50
>gi|148696731|gb|EDL28678.1| mCG1048873 [Mus musculus]
Length = 139
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 7/38 (18%)
Query: 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA 83
VK KDPN PK PPSAFF+F E+ HP +K
Sbjct: 16 VKKKFKDPNVPKTPPSAFFLFCSEY-------HPKIKG 46
>gi|444730109|gb|ELW70504.1| High mobility group protein B1 [Tupaia chinensis]
Length = 208
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDP+ PKRPP AFF+F E+R K E +
Sbjct: 78 KDPSAPKRPPLAFFLFCSEYRPKIKGEQSGL 108
>gi|378727181|gb|EHY53640.1| non-histone chromosomal protein 6 [Exophiala dermatitidis
NIH/UT8656]
Length = 102
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KAS+SS + + K KKDPN PKR SA+ F E R+ ++E+P +
Sbjct: 3 KASKSSKTKGRGEKK-KKDPNAPKRGLSAYMFFANEQRESVREENPGI 49
>gi|426396631|ref|XP_004064536.1| PREDICTED: LOW QUALITY PROTEIN: elongation factor 1-alpha, oocyte
form-like [Gorilla gorilla gorilla]
Length = 518
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN K+ PSAFF+F E+ K+EHP++
Sbjct: 453 KDPNVLKKHPSAFFLFSSEYLHKIKREHPSL 483
>gi|336373128|gb|EGO01466.1| hypothetical protein SERLA73DRAFT_131740 [Serpula lacrymans var.
lacrymans S7.3]
Length = 165
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
KDPN PKRP SA+ +F E R K+++P + +S+
Sbjct: 91 KDPNAPKRPASAYILFQNEVRAKLKEQNPELPQSELLSL 129
>gi|325303836|tpg|DAA34592.1| TPA_exp: putative HMG-like protein [Amblyomma variegatum]
Length = 145
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SAFF F + R +QE+P+
Sbjct: 91 KDPNAPKRPLSAFFWFCNDERPNVRQENPDA 121
>gi|335281869|ref|XP_003353912.1| PREDICTED: FACT complex subunit SSRP1 [Sus scrofa]
Length = 709
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
R S K+ VK K DPN PKRP SA+ ++L R+ K +HP +
Sbjct: 529 RKSRKKPTEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI 572
>gi|303282319|ref|XP_003060451.1| high mobility group family B protein [Micromonas pusilla CCMP1545]
gi|226457922|gb|EEH55220.1| high mobility group family B protein [Micromonas pusilla CCMP1545]
Length = 922
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPP+A+ +F + R +++HP +
Sbjct: 697 DPNAPKRPPNAYILFSNDARAKLQKQHPEM 726
>gi|195123163|ref|XP_002006078.1| GI18750 [Drosophila mojavensis]
gi|193911146|gb|EDW10013.1| GI18750 [Drosophila mojavensis]
Length = 734
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAV 84
D NKPKRP +AF ++L E R+ K+++P +K
Sbjct: 557 DSNKPKRPTTAFMLWLSETREQIKRDNPGIKVT 589
>gi|27450225|gb|AAO14565.1|AF462604_2 HMG-L6 [Mus musculus]
Length = 199
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KD N PKRP SAFF+F E+R K E P +
Sbjct: 99 KDRNAPKRPSSAFFLFCSEYRPKIKGESPGL 129
>gi|42601334|gb|AAS21361.1| high mobility group protein 2 [Oikopleura dioica]
Length = 105
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
AKKDPN PKRP +AFF+F + R K+ P VS V+
Sbjct: 4 AKKDPNAPKRPQTAFFLFAADNRADAKKCLPEGSRVSEVA 43
>gi|307204835|gb|EFN83393.1| FACT complex subunit Ssrp1 [Harpegnathos saltator]
Length = 737
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
+KD NKPKRPP+AF ++L R+ K ++P + AV+ ++
Sbjct: 543 EKDTNKPKRPPTAFMLWLNNARESIKADNPGI-AVTEIA 580
>gi|255537735|ref|XP_002509934.1| transcription factor, putative [Ricinus communis]
gi|223549833|gb|EEF51321.1| transcription factor, putative [Ricinus communis]
Length = 514
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 41 KRTKNVKSAKK----DPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
K+TK + KK DPNKPK+P S+F +F +E RK QE P
Sbjct: 417 KKTKENRQKKKQQNVDPNKPKKPASSFLIFSKEARKNLAQERP 459
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
DP KPK+P SAFF+F E R E+ NV+ V+ ++
Sbjct: 307 DPLKPKQPMSAFFLFSNERRASLLAENKNVREVAKIA 343
>gi|394337181|gb|AFN27605.1| high mobility group protein 1 [Azumapecten farreri]
Length = 215
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 52 DPNKPKRPPSAFFVFLEEFRK 72
DP KPKRP +A+F+FL +FRK
Sbjct: 96 DPTKPKRPQTAYFLFLGDFRK 116
>gi|355563197|gb|EHH19759.1| hypothetical protein EGK_02478, partial [Macaca mulatta]
Length = 121
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRP S FF+F EF K +P +
Sbjct: 26 DPNAPKRPLSGFFLFCSEFHPKMKSTNPGI 55
>gi|432113411|gb|ELK35821.1| FACT complex subunit SSRP1 [Myotis davidii]
Length = 709
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
R S K+ VK K DPN PKRP SA+ ++L R+ K +HP +
Sbjct: 529 RKSRKKPMEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI 572
>gi|407262623|ref|XP_003946494.1| PREDICTED: high mobility group protein B1-like [Mus musculus]
Length = 140
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
PN PK+PPS FF+F E+ K +HP +
Sbjct: 32 PNTPKKPPSTFFLFYSEYHPKIKGKHPGL 60
>gi|290998589|ref|XP_002681863.1| hypothetical protein NAEGRDRAFT_82958 [Naegleria gruberi]
gi|284095488|gb|EFC49119.1| hypothetical protein NAEGRDRAFT_82958 [Naegleria gruberi]
Length = 219
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KKDPN PK+P + +F+F +E R+ K + K+ S VS
Sbjct: 9 KKDPNAPKKPKTGYFLFCDEHREAAKAKTGEKKSASEVS 47
>gi|427793709|gb|JAA62306.1| Putative dorsal switch protein 1, partial [Rhipicephalus
pulchellus]
Length = 640
Score = 37.4 bits (85), Expect = 1.3, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
R KR V +D NKPKRP +AF +F+ +FRK + P
Sbjct: 275 RERYKREMAVYKPARDANKPKRPGTAFMLFMGDFRKEMAGKEP 317
>gi|417404085|gb|JAA48818.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 709
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
R S K+ VK K DPN PKRP SA+ ++L R+ K +HP +
Sbjct: 529 RKSRKKPMEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI 572
>gi|440298682|gb|ELP91313.1| hypothetical protein EIN_153200 [Entamoeba invadens IP1]
Length = 185
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVS 85
DPNKPK+P +A+ ++L E R K++ P++K
Sbjct: 96 DPNKPKKPQTAYMLYLNEHRAEIKEKFPDMKVTE 129
>gi|427787117|gb|JAA59010.1| Putative dorsal switch protein 1 [Rhipicephalus pulchellus]
Length = 208
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
KDPN PKRP SAFF F + R +QE+P+
Sbjct: 91 KDPNAPKRPLSAFFWFCNDERPNVRQENPD 120
>gi|148669729|gb|EDL01676.1| mCG1025710 [Mus musculus]
Length = 178
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KD N PKRP SAFF+F E+R K E P +
Sbjct: 99 KDRNAPKRPSSAFFLFCSEYRPKIKGESPGL 129
>gi|312075672|ref|XP_003140521.1| high mobility group protein 1.2 [Loa loa]
gi|307764316|gb|EFO23550.1| high mobility group protein 1.2 [Loa loa]
Length = 211
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK 82
K KKDPN PKR SAFF F + R +Q+HP K
Sbjct: 88 KRVKKDPNAPKRALSAFFFFSHDKRPEVQQQHPEWK 123
>gi|357139210|ref|XP_003571177.1| PREDICTED: high mobility group B protein 13-like [Brachypodium
distachyon]
Length = 537
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN+PK+P S+F +F +E RK +E P V
Sbjct: 450 DPNRPKKPASSFLLFSKEARKQLVEERPGV 479
>gi|115445389|ref|NP_001046474.1| Os02g0258200 [Oryza sativa Japonica Group]
gi|113536005|dbj|BAF08388.1| Os02g0258200, partial [Oryza sativa Japonica Group]
Length = 269
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
DPN+PK+P S+F +F +E R+ +E P V + + ++
Sbjct: 175 DPNRPKKPASSFLLFSKEARRQLAEERPGVASSTLTAL 212
>gi|403254821|ref|XP_003920153.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1 [Saimiri
boliviensis boliviensis]
Length = 826
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SA+ ++L R+ K +HP +
Sbjct: 659 KDPNAPKRPMSAYMLWLNASREKIKSDHPGI 689
>gi|355784552|gb|EHH65403.1| hypothetical protein EGM_02155, partial [Macaca fascicularis]
Length = 116
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRP S FF+F EF K +P +
Sbjct: 26 DPNAPKRPLSGFFLFCSEFHPKMKSTNPGI 55
>gi|442755991|gb|JAA70155.1| Putative dorsal switch protein 1 [Ixodes ricinus]
Length = 207
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SAFF F + R +QE P+
Sbjct: 91 KDPNAPKRPLSAFFWFCNDERPNVRQESPDA 121
>gi|402583047|gb|EJW76991.1| hypothetical protein WUBG_12099 [Wuchereria bancrofti]
Length = 170
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK 82
K KKDPN PKR SAFF F + R +Q+HP K
Sbjct: 88 KRVKKDPNAPKRALSAFFFFSHDKRPEVQQQHPEWK 123
>gi|1806648|gb|AAB41544.1| structure-specific recognition protein 1 [Bos taurus]
Length = 460
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KDPN PKRP SA+ ++L R+ K +HP + +V+ +S
Sbjct: 293 KDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SVTDLS 329
>gi|386783903|gb|AFJ24846.1| high mobility group-1 [Schmidtea mediterranea]
Length = 192
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK 82
KDPNKPK +AFF F +E RK K+E+P K
Sbjct: 88 KDPNKPKGAWTAFFFFSDEHRKKIKEENPEYK 119
>gi|296479522|tpg|DAA21637.1| TPA: structure specific recognition protein 1 [Bos taurus]
Length = 709
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
R S K+ VK K DPN PKRP SA+ ++L R+ K +HP + +V+ +S
Sbjct: 529 RKSRKKPLEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SVTDLS 578
>gi|241122588|ref|XP_002403591.1| DNA-binding protein, putative [Ixodes scapularis]
gi|215493481|gb|EEC03122.1| DNA-binding protein, putative [Ixodes scapularis]
Length = 207
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SAFF F + R +QE P+
Sbjct: 91 KDPNAPKRPLSAFFWFCNDERPNVRQESPDA 121
>gi|323307721|gb|EGA60984.1| Abf2p [Saccharomyces cerevisiae FostersO]
Length = 124
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 10/68 (14%)
Query: 15 NEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVY 74
+E KP+ + A+ +LKAS+ + R + +K PKRP SA+F++L++ R +
Sbjct: 12 HESSKPLFNLAS----TLLKASKRTQLRNELIKQG------PKRPTSAYFLYLQDHRSQF 61
Query: 75 KQEHPNVK 82
+E+P ++
Sbjct: 62 VKENPTLR 69
>gi|57232750|ref|NP_660206.2| high mobility group protein B4 [Homo sapiens]
gi|387912835|sp|Q8WW32.2|HMGB4_HUMAN RecName: Full=High mobility group protein B4
gi|189065201|dbj|BAG34924.1| unnamed protein product [Homo sapiens]
gi|208968483|dbj|BAG74080.1| high-mobility group box 4 [synthetic construct]
Length = 186
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAV 84
DP +P+RPPS+F +F ++ K+E+PN V
Sbjct: 89 DPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVV 121
>gi|443895134|dbj|GAC72480.1| HMG box-containing protein [Pseudozyma antarctica T-34]
Length = 99
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K+S S+ KRT +KKDP PKRP SA+ F ++ R+ KQ +P
Sbjct: 9 KSSTSTQKRTTK---SKKDPAAPKRPLSAYMFFSQDHRERVKQANPEA 53
>gi|296471967|tpg|DAA14082.1| TPA: Putative upstream-binding factor 1-like protein 3/5-like [Bos
taurus]
Length = 423
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 30 KAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K V++ ++ + ++ KK P+ PKRP +A+ +F +E R Y Q+HP +
Sbjct: 89 KEVIQEAKENVNNPSKSRNHKKHPDLPKRPLTAYLLFFKEMRPQYLQKHPKM 140
>gi|297464807|ref|XP_001787586.2| PREDICTED: Putative upstream-binding factor 1-like protein 3/5-like
[Bos taurus]
Length = 404
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 30 KAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K V++ ++ + ++ KK P+ PKRP +A+ +F +E R Y Q+HP +
Sbjct: 74 KEVIQEAKENVNNPSKSRNHKKHPDLPKRPLTAYLLFFKEMRPQYLQKHPKM 125
>gi|155371817|ref|NP_001094511.1| FACT complex subunit SSRP1 [Bos taurus]
gi|151554654|gb|AAI49986.1| SSRP1 protein [Bos taurus]
gi|440894802|gb|ELR47155.1| FACT complex subunit SSRP1 [Bos grunniens mutus]
Length = 709
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
R S K+ VK K DPN PKRP SA+ ++L R+ K +HP + +V+ +S
Sbjct: 529 RKSRKKPLEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SVTDLS 578
>gi|359080876|ref|XP_002707840.2| PREDICTED: Putative upstream-binding factor 1-like protein 3/5-like
[Bos taurus]
Length = 404
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 30 KAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K V++ ++ + ++ KK P+ PKRP +A+ +F +E R Y Q+HP +
Sbjct: 74 KEVIQEAKENVNNPSKSRNHKKHPDLPKRPLTAYLLFFKEMRPQYLQKHPKM 125
>gi|358419552|ref|XP_003584270.1| PREDICTED: putative upstream-binding factor 1-like protein 3/5-like
[Bos taurus]
Length = 404
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 30 KAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K V++ ++ + ++ KK P+ PKRP +A+ +F +E R Y Q+HP +
Sbjct: 74 KEVIQEAKENVNNPSKSRNHKKHPDLPKRPLTAYLLFFKEMRPQYLQKHPKM 125
>gi|444707796|gb|ELW48970.1| High mobility group protein B1 [Tupaia chinensis]
Length = 224
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KD N PKRPP AF +F E+ K EHP + ++S V+
Sbjct: 90 KDSNAPKRPPLAFVLFCSEYCPKIKGEHPGL-SISDVA 126
>gi|410057780|ref|XP_003954279.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1 [Pan
troglodytes]
Length = 709
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SA+ ++L R+ K +HP +
Sbjct: 542 KDPNAPKRPMSAYMLWLNASREKIKSDHPGI 572
>gi|444705434|gb|ELW46861.1| FACT complex subunit SSRP1 [Tupaia chinensis]
Length = 704
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SA+ ++L R+ K +HP +
Sbjct: 537 KDPNAPKRPMSAYMLWLNASREKIKSDHPGI 567
>gi|441595508|ref|XP_004087247.1| PREDICTED: uncharacterized protein LOC101177382, partial [Nomascus
leucogenys]
Length = 276
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 8/39 (20%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVS-AVSI 89
DPN PKRPPS F +F EF HP +K+ + +SI
Sbjct: 235 DPNAPKRPPSGFSLFCSEF-------HPKIKSTNPGISI 266
>gi|219116576|ref|XP_002179083.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409850|gb|EEC49781.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 75
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PK+ ++FF FL E R KQE+P++
Sbjct: 1 KDPNAPKKAMTSFFYFLNEMRPKIKQENPDM 31
>gi|449272347|gb|EMC82325.1| FACT complex subunit SSRP1 [Columba livia]
Length = 704
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SA+ ++L R+ K +HP +
Sbjct: 540 KDPNAPKRPMSAYMLWLNASRERIKSDHPGI 570
>gi|6323717|ref|NP_013788.1| Abf2p [Saccharomyces cerevisiae S288c]
gi|398988|sp|Q02486.1|ABF2_YEAST RecName: Full=ARS-binding factor 2, mitochondrial; Flags:
Precursor
gi|763019|emb|CAA88797.1| Abf2p [Saccharomyces cerevisiae]
gi|2815294|emb|CAA11146.1| cisplatin-damaged DNA recognition protein CDRP1 [Saccharomyces
cerevisiae]
gi|45269826|gb|AAS56293.1| YMR072W [Saccharomyces cerevisiae]
gi|151946230|gb|EDN64461.1| ARS-binding factor [Saccharomyces cerevisiae YJM789]
gi|190408303|gb|EDV11568.1| ARS-binding factor 2, mitochondrial precursor [Saccharomyces
cerevisiae RM11-1a]
gi|207342356|gb|EDZ70142.1| YMR072Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256273496|gb|EEU08430.1| Abf2p [Saccharomyces cerevisiae JAY291]
gi|259148645|emb|CAY81890.1| Abf2p [Saccharomyces cerevisiae EC1118]
gi|285814075|tpg|DAA09970.1| TPA: Abf2p [Saccharomyces cerevisiae S288c]
gi|323303592|gb|EGA57383.1| Abf2p [Saccharomyces cerevisiae FostersB]
gi|323336275|gb|EGA77546.1| Abf2p [Saccharomyces cerevisiae Vin13]
gi|323347161|gb|EGA81436.1| Abf2p [Saccharomyces cerevisiae Lalvin QA23]
gi|323353057|gb|EGA85357.1| Abf2p [Saccharomyces cerevisiae VL3]
gi|349580353|dbj|GAA25513.1| K7_Abf2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365763798|gb|EHN05324.1| Abf2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
gi|392297232|gb|EIW08332.1| Abf2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 183
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 10/68 (14%)
Query: 15 NEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVY 74
+E KP+ + A+ +LKAS+ + R + +K PKRP SA+F++L++ R +
Sbjct: 12 HESSKPLFNLAS----TLLKASKRTQLRNELIKQG------PKRPTSAYFLYLQDHRSQF 61
Query: 75 KQEHPNVK 82
+E+P ++
Sbjct: 62 VKENPTLR 69
>gi|403293162|ref|XP_003937591.1| PREDICTED: high mobility group protein B4 [Saimiri boliviensis
boliviensis]
Length = 254
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAV 84
DP P+RPPS+F +F ++ K+E+PN V
Sbjct: 152 DPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVV 184
>gi|301763549|ref|XP_002917185.1| PREDICTED: high mobility group protein B4-like [Ailuropoda
melanoleuca]
Length = 193
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAV 84
DP P+RPPS+F +F ++ K+E+PN V
Sbjct: 91 DPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVV 123
>gi|426245460|ref|XP_004023562.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1 [Ovis
aries]
Length = 703
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
R S K+ VK K DPN PKRP SA+ ++L R+ K +HP +
Sbjct: 523 RKSRKKPLEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI 566
>gi|291237485|ref|XP_002738666.1| PREDICTED: TCF3 (E2A) fusion partner-like [Saccoglossus
kowalevskii]
Length = 369
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 33 LKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFR 71
+ AS SS K+ +KDPN PKRP +AFF+F ++ R
Sbjct: 174 VSASGSSKKKRHGKTEKEKDPNAPKRPANAFFMFCQQER 212
>gi|47124491|gb|AAH70148.1| High-mobility group box 4 [Homo sapiens]
Length = 112
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAV 84
DP P+RPPS+F +F ++ K+E+PN V
Sbjct: 15 DPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVV 47
>gi|29825377|gb|AAO92280.1| putative HMG-like protein [Dermacentor variabilis]
Length = 208
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SAFF F + R +QE P+
Sbjct: 91 KDPNAPKRPLSAFFWFCNDERPNVRQESPDA 121
>gi|366988547|ref|XP_003674040.1| hypothetical protein NCAS_0A11010 [Naumovozyma castellii CBS
4309]
gi|342299903|emb|CCC67659.1| hypothetical protein NCAS_0A11010 [Naumovozyma castellii CBS
4309]
Length = 101
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKR SA+ F E R + K E+PN+
Sbjct: 14 KKDPNAPKRGLSAYMFFANENRDIVKAENPNI 45
>gi|307180072|gb|EFN68140.1| FACT complex subunit Ssrp1 [Camponotus floridanus]
Length = 739
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+KD NKPKRPP+AF ++L R+ K ++P +
Sbjct: 543 EKDANKPKRPPTAFMLWLNSARESIKADNPGI 574
>gi|224072172|ref|XP_002303636.1| high mobility group family [Populus trichocarpa]
gi|222841068|gb|EEE78615.1| high mobility group family [Populus trichocarpa]
Length = 480
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPNKPK+P S+F +F +E RK E P +
Sbjct: 394 DPNKPKKPASSFLLFSKETRKSLMDERPGI 423
Score = 34.7 bits (78), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KDP KPK+P SAFF+F E R E+ +V V+ ++
Sbjct: 268 KDPLKPKQPLSAFFLFCNERRAALLAENKSVLEVAKIA 305
>gi|344299407|ref|XP_003421377.1| PREDICTED: FACT complex subunit SSRP1 [Loxodonta africana]
Length = 709
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SA+ ++L R+ K +HP +
Sbjct: 542 KDPNAPKRPMSAYMLWLNASREKIKSDHPGI 572
>gi|242389922|dbj|BAH80451.1| putative HMG1 protein [Lentinula edodes]
Length = 560
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 28 KRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFR 71
KR+ V +A++ K K+ KS KDPN PK+P SA+F+FL+ R
Sbjct: 418 KRENVFRAAQ--RKAGKSRKSNIKDPNAPKKPLSAYFMFLQRIR 459
>gi|169869341|ref|XP_001841237.1| hypothetical protein CC1G_11400 [Coprinopsis cinerea okayama7#130]
gi|116497705|gb|EAU80600.1| hypothetical protein CC1G_11400 [Coprinopsis cinerea okayama7#130]
Length = 255
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRP S++ +F E R K+++PN+
Sbjct: 73 DPNAPKRPASSYILFQNEVRNELKRQNPNL 102
>gi|410351023|gb|JAA42115.1| structure specific recognition protein 1 [Pan troglodytes]
Length = 712
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SA+ ++L R+ K +HP +
Sbjct: 545 KDPNAPKRPMSAYMLWLNASREKIKSDHPGI 575
>gi|444323521|ref|XP_004182401.1| hypothetical protein TBLA_0I02240 [Tetrapisispora blattae CBS
6284]
gi|387515448|emb|CCH62882.1| hypothetical protein TBLA_0I02240 [Tetrapisispora blattae CBS
6284]
Length = 94
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKR SA+ F E R + + E+P+V
Sbjct: 15 KKDPNAPKRALSAYMFFANETRDIVRSENPDV 46
>gi|241752334|ref|XP_002401049.1| conserved hypothetical protein [Ixodes scapularis]
gi|215508304|gb|EEC17758.1| conserved hypothetical protein [Ixodes scapularis]
Length = 133
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 40 NKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
N RT++V + DP+KP+RP + F +F ++ R Y HP
Sbjct: 41 NTRTRHV--SWPDPSKPRRPMNGFMLFAQKHRGEYSHLHPG 79
>gi|297688746|ref|XP_002821837.1| PREDICTED: FACT complex subunit SSRP1 isoform 2 [Pongo abelii]
Length = 709
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SA+ ++L R+ K +HP +
Sbjct: 542 KDPNAPKRPMSAYMLWLNASREKIKSDHPGI 572
>gi|296218242|ref|XP_002755324.1| PREDICTED: FACT complex subunit SSRP1 [Callithrix jacchus]
Length = 709
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SA+ ++L R+ K +HP +
Sbjct: 542 KDPNAPKRPMSAYMLWLNASREKIKSDHPGI 572
>gi|444515932|gb|ELV11007.1| High mobility group protein B3 [Tupaia chinensis]
Length = 212
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN P+RPPS F +F EF K +P +
Sbjct: 89 DPNAPERPPSGFLLFCSEFHLKIKSTNPGI 118
>gi|154284354|ref|XP_001542972.1| nucleosome binding protein [Ajellomyces capsulatus NAm1]
gi|150406613|gb|EDN02154.1| nucleosome binding protein [Ajellomyces capsulatus NAm1]
gi|240273630|gb|EER37150.1| nucleosome binding protein [Ajellomyces capsulatus H143]
gi|325087527|gb|EGC40837.1| nucleosome binding protein [Ajellomyces capsulatus H88]
Length = 102
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KASR + R+ ++ KKDPN PKR SA+ F E R+ ++E+P +
Sbjct: 5 KASRKTKARS--IEKKKKDPNAPKRGLSAYMFFANEQRENVREENPGI 50
>gi|410973949|ref|XP_003993410.1| PREDICTED: FACT complex subunit SSRP1 [Felis catus]
Length = 709
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SA+ ++L R+ K +HP +
Sbjct: 542 KDPNAPKRPMSAYMLWLNASREKIKSDHPGI 572
>gi|332252411|ref|XP_003275348.1| PREDICTED: FACT complex subunit SSRP1 [Nomascus leucogenys]
Length = 709
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SA+ ++L R+ K +HP +
Sbjct: 542 KDPNAPKRPMSAYMLWLNASREKIKSDHPGI 572
>gi|383872505|ref|NP_001244820.1| FACT complex subunit SSRP1 [Macaca mulatta]
gi|402893460|ref|XP_003909913.1| PREDICTED: FACT complex subunit SSRP1 [Papio anubis]
gi|355566511|gb|EHH22890.1| Facilitates chromatin transcription complex subunit SSRP1 [Macaca
mulatta]
gi|355752113|gb|EHH56233.1| Facilitates chromatin transcription complex subunit SSRP1 [Macaca
fascicularis]
gi|380784229|gb|AFE63990.1| FACT complex subunit SSRP1 [Macaca mulatta]
gi|383421069|gb|AFH33748.1| FACT complex subunit SSRP1 [Macaca mulatta]
gi|384949008|gb|AFI38109.1| FACT complex subunit SSRP1 [Macaca mulatta]
Length = 709
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SA+ ++L R+ K +HP +
Sbjct: 542 KDPNAPKRPMSAYMLWLNASREKIKSDHPGI 572
>gi|4507241|ref|NP_003137.1| FACT complex subunit SSRP1 [Homo sapiens]
gi|397512296|ref|XP_003826485.1| PREDICTED: FACT complex subunit SSRP1 [Pan paniscus]
gi|426368405|ref|XP_004051198.1| PREDICTED: FACT complex subunit SSRP1 [Gorilla gorilla gorilla]
gi|730840|sp|Q08945.1|SSRP1_HUMAN RecName: Full=FACT complex subunit SSRP1; AltName:
Full=Chromatin-specific transcription elongation factor
80 kDa subunit; AltName: Full=Facilitates chromatin
transcription complex 80 kDa subunit; Short=FACT 80 kDa
subunit; Short=FACTp80; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; Short=hSSRP1; AltName: Full=T160
gi|184242|gb|AAA58660.1| high mobility group box [Homo sapiens]
gi|13477285|gb|AAH05116.1| Structure specific recognition protein 1 [Homo sapiens]
gi|119594140|gb|EAW73734.1| structure specific recognition protein 1, isoform CRA_a [Homo
sapiens]
gi|119594141|gb|EAW73735.1| structure specific recognition protein 1, isoform CRA_a [Homo
sapiens]
gi|123993967|gb|ABM84585.1| structure specific recognition protein 1 [synthetic construct]
gi|123998313|gb|ABM86758.1| structure specific recognition protein 1 [synthetic construct]
gi|410226712|gb|JAA10575.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410226714|gb|JAA10576.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410262712|gb|JAA19322.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410262714|gb|JAA19323.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410305268|gb|JAA31234.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410305270|gb|JAA31235.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410351021|gb|JAA42114.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410351025|gb|JAA42116.1| structure specific recognition protein 1 [Pan troglodytes]
Length = 709
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SA+ ++L R+ K +HP +
Sbjct: 542 KDPNAPKRPMSAYMLWLNASREKIKSDHPGI 572
>gi|301774634|ref|XP_002922750.1| PREDICTED: FACT complex subunit SSRP1-like [Ailuropoda melanoleuca]
Length = 709
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SA+ ++L R+ K +HP +
Sbjct: 542 KDPNAPKRPMSAYMLWLNASREKIKSDHPGI 572
>gi|47211316|emb|CAF92109.1| unnamed protein product [Tetraodon nigroviridis]
Length = 777
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 27 GKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
G +K +S +S K+ K++ P KPKRP SA F+F EE R +QE P++
Sbjct: 361 GYKKGTGASSPASKKKNSKTKAS---PEKPKRPISAMFIFSEEKRPKLQQERPDL 412
>gi|397502952|ref|XP_003822100.1| PREDICTED: high mobility group protein B3-like [Pan paniscus]
gi|410056873|ref|XP_003317692.2| PREDICTED: high mobility group protein B3-like [Pan troglodytes]
Length = 221
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVS-AVSI 89
KKDPN KRP S FF+F EF HP +K+ + +SI
Sbjct: 106 KKDPNALKRPLSGFFLFCSEF-------HPKIKSTNPGISI 139
>gi|361127235|gb|EHK99210.1| putative Non-histone chromosomal protein 6 [Glarea lozoyensis
74030]
Length = 100
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KR K + KKDPN PKR SA+ F E R+ ++E+P +
Sbjct: 8 KRAKRTEKKKKDPNAPKRGLSAYMFFANEQRENVREENPGI 48
>gi|344241535|gb|EGV97638.1| High mobility group protein B1 [Cricetulus griseus]
gi|344241536|gb|EGV97639.1| High mobility group protein B1 [Cricetulus griseus]
Length = 154
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPP AFF+F E+ ++ +P +
Sbjct: 38 KDPNAPKRPPLAFFLFCCEYHPKNQRRNPGL 68
>gi|328856362|gb|EGG05484.1| hypothetical protein MELLADRAFT_31192 [Melampsora larici-populina
98AG31]
Length = 82
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+KDPN PKRP SA+ F +++R+ K E+P V
Sbjct: 7 EKDPNAPKRPLSAYMFFSQDWRERIKTENPEV 38
>gi|295671102|ref|XP_002796098.1| nucleosome binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284231|gb|EEH39797.1| nucleosome binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 103
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 42 RTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+T+ V+ KKDPN PKR SA+ F E R ++E+P +
Sbjct: 12 KTRGVEKKKKDPNAPKRGLSAYMFFANEQRDNVREENPGI 51
>gi|281343903|gb|EFB19487.1| hypothetical protein PANDA_011742 [Ailuropoda melanoleuca]
Length = 607
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SA+ ++L R+ K +HP +
Sbjct: 525 KDPNAPKRPMSAYMLWLNASREKIKSDHPGI 555
>gi|60552474|gb|AAH91486.1| SSRP1 protein, partial [Homo sapiens]
Length = 633
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SA+ ++L R+ K +HP +
Sbjct: 542 KDPNAPKRPMSAYMLWLNASREKIKSDHPGI 572
>gi|427793707|gb|JAA62305.1| Putative dorsal switch protein 1, partial [Rhipicephalus
pulchellus]
Length = 529
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
R KR V +D NKPKRP +AF +F+ +FRK + P
Sbjct: 260 RERYKREMAVYKPARDANKPKRPGTAFMLFMGDFRKEMAGKEP 302
>gi|392574245|gb|EIW67382.1| hypothetical protein TREMEDRAFT_74569 [Tremella mesenterica DSM
1558]
Length = 351
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+DPN PKRPPSA+ +F E R ++ +P +
Sbjct: 130 RDPNAPKRPPSAYIMFQNEVRDQMRKTNPEI 160
>gi|351705778|gb|EHB08697.1| Putative upstream-binding factor 1-like protein 3/5 [Heterocephalus
glaber]
Length = 403
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
KK P+ PKRP +A+ F +E R +Y Q+HPN+ I
Sbjct: 94 KKYPDFPKRPLTAYIRFYKEQRALYSQKHPNLSNQELTKI 133
>gi|58267838|ref|XP_571075.1| nonhistone protein 6 [Cryptococcus neoformans var. neoformans
JEC21]
gi|134112343|ref|XP_775147.1| hypothetical protein CNBE4210 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257799|gb|EAL20500.1| hypothetical protein CNBE4210 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227309|gb|AAW43768.1| nonhistone protein 6, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 240
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+DPN PKRPPSA+ +F E R + +P +
Sbjct: 89 RDPNAPKRPPSAYILFQNEVRDDIRTSNPGM 119
>gi|449501868|ref|XP_004174468.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1
[Taeniopygia guttata]
Length = 705
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SA+ ++L R+ K +HP +
Sbjct: 540 KDPNAPKRPMSAYMLWLNANREKIKSDHPGI 570
>gi|281349442|gb|EFB25026.1| hypothetical protein PANDA_005395 [Ailuropoda melanoleuca]
Length = 181
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAV 84
DP P+RPPS+F +F ++ K+E+PN V
Sbjct: 89 DPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVV 121
>gi|126333240|ref|XP_001376238.1| PREDICTED: FACT complex subunit SSRP1 [Monodelphis domestica]
Length = 712
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SA+ ++L R+ K +HP +
Sbjct: 542 KDPNAPKRPMSAYMLWLNASREKIKSDHPGI 572
>gi|395544035|ref|XP_003773918.1| PREDICTED: FACT complex subunit SSRP1 [Sarcophilus harrisii]
Length = 712
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SA+ ++L R+ K +HP +
Sbjct: 542 KDPNAPKRPMSAYMLWLNASREKIKSDHPGI 572
>gi|335308835|ref|XP_003361389.1| PREDICTED: high mobility group protein B4-like [Sus scrofa]
Length = 198
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
K+DP P+RPPS+F +F ++ K+E+PN
Sbjct: 89 KRDPQAPRRPPSSFLLFCQDNYAQLKRENPN 119
>gi|355691926|gb|EHH27111.1| hypothetical protein EGK_17228 [Macaca mulatta]
Length = 196
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
D N PKRPPS FF+F EF K +P +
Sbjct: 76 DSNAPKRPPSGFFLFSSEFCPKMKSTNPGI 105
>gi|323332044|gb|EGA73455.1| Abf2p [Saccharomyces cerevisiae AWRI796]
Length = 139
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 10/68 (14%)
Query: 15 NEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVY 74
+E KP+ + A+ +LKAS+ + R + +K PKRP SA+F++L++ R +
Sbjct: 12 HESSKPLFNLAS----TLLKASKRTQLRNELIKQG------PKRPTSAYFLYLQDHRSQF 61
Query: 75 KQEHPNVK 82
+E+P ++
Sbjct: 62 VKENPTLR 69
>gi|405120934|gb|AFR95704.1| nonhistone protein 6 [Cryptococcus neoformans var. grubii H99]
Length = 240
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+DPN PKRPPSA+ +F E R + +P +
Sbjct: 89 RDPNAPKRPPSAYILFQNEVRDDIRTSNPGM 119
>gi|121705796|ref|XP_001271161.1| nucleosome binding protein (Nhp6a), putative [Aspergillus
clavatus NRRL 1]
gi|119399307|gb|EAW09735.1| nucleosome binding protein (Nhp6a), putative [Aspergillus
clavatus NRRL 1]
Length = 104
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 38 SSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
S+ +TK V+ KKDPN PKR SA+ F + R ++E+P +
Sbjct: 7 STRTKTKRVERKKKDPNAPKRGLSAYMFFANDNRDKVREENPGI 50
>gi|432091911|gb|ELK24758.1| High mobility group protein B1 [Myotis davidii]
Length = 224
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
PN PK+ P AFF+F E R+ K EHP +
Sbjct: 186 PNAPKKLPFAFFLFCSEHRQKIKSEHPGL 214
>gi|345783817|ref|XP_859953.2| PREDICTED: FACT complex subunit SSRP1 isoform 4 [Canis lupus
familiaris]
Length = 711
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SA+ ++L R+ K +HP +
Sbjct: 544 KDPNAPKRPMSAYMLWLNASREKIKADHPGI 574
>gi|334186863|ref|NP_001190816.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
gi|332659408|gb|AEE84808.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
Length = 450
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 32 VLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
+LK ++ K K+ DPNKPK+P S++F+F ++ RK +E P + ++
Sbjct: 349 MLKKKEKTDNLIKKKKNENVDPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTAL 406
>gi|321259389|ref|XP_003194415.1| nonhistone protein 6 [Cryptococcus gattii WM276]
gi|317460886|gb|ADV22628.1| nonhistone protein 6, putative [Cryptococcus gattii WM276]
Length = 237
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+DPN PKRPPSA+ +F E R + +P +
Sbjct: 89 RDPNAPKRPPSAYILFQNEVRDDIRTSNPGM 119
>gi|453086558|gb|EMF14600.1| hypothetical protein SEPMUDRAFT_148265 [Mycosphaerella populorum
SO2202]
Length = 396
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 7 KGAVKKDKNEVVKPVEDRAAGKRKA-------VLK-ASRSSNKRTKNVKSAKK------- 51
+GA D ++++ P + A + A +L+ AS S + T V + KK
Sbjct: 51 QGAGSFDISQLILPFQGVAGAAQLAEQAIQNGLLQVASHSFDAHTPAVDAKKKEKRPYKP 110
Query: 52 -DPNKPKRPPSAFFVFLEEFRKVYKQE 77
DPN PKRP +A+F +L E R QE
Sbjct: 111 RDPNAPKRPLTAYFRYLREVRPFIAQE 137
>gi|395858039|ref|XP_003801382.1| PREDICTED: FACT complex subunit SSRP1 [Otolemur garnettii]
Length = 710
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 33 LKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+ R S K+ VK + DPN PKRP SA+ ++L R+ K +HP +
Sbjct: 525 MSKDRKSRKKPMEVKKGR-DPNAPKRPMSAYMLWLNASREKIKSDHPGI 572
>gi|201066437|gb|ACH92570.1| high-mobility group protein 1-like 1 (predicted) [Otolemur
garnettii]
Length = 210
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN K PPSAFF+F E+ K+EHP +
Sbjct: 90 KDPNASK-PPSAFFLFCSEYLPKIKREHPGL 119
>gi|351698366|gb|EHB01285.1| High mobility group protein B2 [Heterocephalus glaber]
Length = 211
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRP SAFF+F E R K EHP +
Sbjct: 94 NAPKRPSSAFFLFCCEHRPKIKSEHPGL 121
>gi|348565663|ref|XP_003468622.1| PREDICTED: putative upstream-binding factor 1-like protein 3/5-like
[Cavia porcellus]
gi|348565665|ref|XP_003468623.1| PREDICTED: putative upstream-binding factor 1-like protein 3/5-like
[Cavia porcellus]
Length = 407
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 18 VKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQE 77
V+P+++ R+ LK R + KK P+ PKRP +A+ F E R Y Q+
Sbjct: 70 VQPLKESVLAARELALKHRRH--------QEYKKYPDFPKRPLTAYIRFYMEQRTCYSQK 121
Query: 78 HPNV 81
HP +
Sbjct: 122 HPEL 125
>gi|310793467|gb|EFQ28928.1| HMG box protein [Glomerella graminicola M1.001]
Length = 103
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K AKKDPN PKR SA+ F E R+ ++E+P +
Sbjct: 17 KRAKKDPNAPKRGLSAYMFFANEQRENVREENPGI 51
>gi|427780835|gb|JAA55869.1| Putative dorsal switch protein 1 [Rhipicephalus pulchellus]
Length = 508
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
R KR V +D NKPKRP +AF +F+ +FRK + P
Sbjct: 239 RERYKREMAVYKPARDANKPKRPGTAFMLFMGDFRKEMAGKEP 281
>gi|383859589|ref|XP_003705276.1| PREDICTED: FACT complex subunit Ssrp1-like [Megachile rotundata]
Length = 740
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
++D NKPKRPP+AF ++L R+ K ++P + AV+ ++
Sbjct: 543 ERDANKPKRPPTAFMIWLNSNREKIKADNPGI-AVTEIA 580
>gi|358391632|gb|EHK41036.1| hypothetical protein TRIATDRAFT_259074 [Trichoderma atroviride
IMI 206040]
Length = 101
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K AKKDPN PKR SA+ F E R+ ++E+P +
Sbjct: 16 KRAKKDPNAPKRGLSAYMFFANEQRENVREENPGI 50
>gi|297706944|ref|XP_002830283.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pongo abelii]
Length = 125
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K K PN PKRP S FF+F EF K +P +
Sbjct: 20 KGGKNHPNAPKRPLSGFFLFCSEFCPKIKSTNPGI 54
>gi|393907169|gb|EJD74538.1| hypothetical protein LOAG_18151 [Loa loa]
Length = 317
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 40 NKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
++RT K +KKDPN+P++P SA+ +F + + K PN
Sbjct: 94 SRRTIRKKRSKKDPNEPQKPVSAYALFFRDTQAAIKGRSPN 134
>gi|238880555|gb|EEQ44193.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 310
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVS 85
+DP+ PKRP +A+ +F E ++ KQ+ PN +S
Sbjct: 149 RDPDLPKRPTNAYLIFCEMEKERIKQDDPNASDLS 183
>gi|290986470|ref|XP_002675947.1| predicted protein [Naegleria gruberi]
gi|284089546|gb|EFC43203.1| predicted protein [Naegleria gruberi]
Length = 215
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 48 SAKKDPNKPKRPPSAFFVFLEEFR 71
S KKDPN PKRP + FF+F +E R
Sbjct: 7 SKKKDPNAPKRPKTGFFLFCDERR 30
>gi|46105649|ref|XP_380561.1| hypothetical protein FG00385.1 [Gibberella zeae PH-1]
gi|110287687|sp|Q4IQX3.1|NHP6_GIBZE RecName: Full=Non-histone chromosomal protein 6
gi|408400690|gb|EKJ79767.1| hypothetical protein FPSE_00047 [Fusarium pseudograminearum
CS3096]
Length = 101
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K AKKDPN PKR SA+ F E R+ ++E+P +
Sbjct: 14 TKRAKKDPNAPKRGLSAYMFFANEQRENVREENPGI 49
>gi|427794389|gb|JAA62646.1| Putative dorsal switch protein 1, partial [Rhipicephalus
pulchellus]
Length = 604
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
R KR V +D NKPKRP +AF +F+ +FRK + P
Sbjct: 239 RERYKREMAVYKPARDANKPKRPGTAFMLFMGDFRKEMAGKEP 281
>gi|400599237|gb|EJP66941.1| HMG box protein [Beauveria bassiana ARSEF 2860]
Length = 96
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K AKKDPN PKR SA+ F E R+ ++E+P V
Sbjct: 17 KRAKKDPNAPKRGLSAYMFFANEQRENVREENPGV 51
>gi|380476672|emb|CCF44585.1| non-histone chromosomal protein 6 [Colletotrichum higginsianum]
Length = 96
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K AKKDPN PKR SA+ F E R+ ++E+P +
Sbjct: 17 KRAKKDPNAPKRGLSAYMFFANEQRENVREENPGI 51
>gi|340383933|ref|XP_003390470.1| PREDICTED: FACT complex subunit SSRP1-like, partial [Amphimedon
queenslandica]
Length = 410
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PK+P S++ ++L+E R K++HP +
Sbjct: 277 DPNCPKKPLSSYMLWLQEMRPSLKKKHPEL 306
>gi|444523921|gb|ELV13661.1| High mobility group protein B1 [Tupaia chinensis]
Length = 226
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN K+PPSAF ++ E+R K HP +
Sbjct: 77 KDPNVSKKPPSAFCLYCSEYRPKIKGGHPGL 107
>gi|410256408|gb|JAA16171.1| high mobility group box 3 [Pan troglodytes]
Length = 213
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DP+ PKRPPS FF+F E R K +P +
Sbjct: 89 DPSAPKRPPSGFFLFSSEIRPKIKSTNPGI 118
>gi|380011419|ref|XP_003689803.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit Ssrp1-like
[Apis florea]
Length = 729
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
D NKPKRPP+AF ++L R+ K E+P + AV+ ++
Sbjct: 545 DANKPKRPPTAFMMWLNSARERIKAENPGI-AVTEIA 580
>gi|449685055|ref|XP_002156373.2| PREDICTED: high mobility group protein homolog TDP-1-like, partial
[Hydra magnipapillata]
Length = 218
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 51 KDPNKPKRPPSAFFVFLEEFR 71
KDPNKPKR +A+F FL +FR
Sbjct: 101 KDPNKPKRCQTAYFFFLHDFR 121
>gi|302926833|ref|XP_003054372.1| HMG box-containing protein [Nectria haematococca mpVI 77-13-4]
gi|256735313|gb|EEU48659.1| HMG box-containing protein [Nectria haematococca mpVI 77-13-4]
Length = 101
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 38 SSNKRTKNVKS-AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+ KR K VK KKDPN PKR SA+ F E R+ ++E+P +
Sbjct: 5 DAGKRGKAVKKRGKKDPNAPKRGLSAYMFFANEQRENVREENPGI 49
>gi|18088957|gb|AAH21180.1| High-mobility group box 4 [Homo sapiens]
gi|312150396|gb|ADQ31710.1| high-mobility group box 4 [synthetic construct]
Length = 186
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAV 84
DP P+RPPS+F +F ++ K+E+PN V
Sbjct: 89 DPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVV 121
>gi|426328852|ref|XP_004065350.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B4
[Gorilla gorilla gorilla]
Length = 186
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAV 84
DP P+RPPS+F +F ++ K+E+PN V
Sbjct: 89 DPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVV 121
>gi|414585863|tpg|DAA36434.1| TPA: hypothetical protein ZEAMMB73_396569 [Zea mays]
Length = 119
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 57 KRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KR + FF FL EFR Y ++HP +K V VS
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVS 51
>gi|345320167|ref|XP_001521836.2| PREDICTED: FACT complex subunit SSRP1-like, partial
[Ornithorhynchus anatinus]
Length = 295
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SA+ ++L R+ K +HP +
Sbjct: 122 KDPNAPKRPMSAYMLWLNASREKIKADHPGI 152
>gi|119623033|gb|EAX02628.1| hCG1644442 [Homo sapiens]
Length = 201
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVS-AVSI 89
KKDPN KRP S FF+F EF HP +K+ + +SI
Sbjct: 86 KKDPNALKRPLSGFFLFCSEF-------HPKIKSTNPGISI 119
>gi|326437020|gb|EGD82590.1| hypothetical protein PTSG_03243 [Salpingoeca sp. ATCC 50818]
Length = 210
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
KKDPN PK+P SA+FVF E R + ++P
Sbjct: 132 KKDPNAPKKPKSAYFVFAETRRDALRAQYP 161
>gi|110808604|gb|ABB22048.1| HMBG4 [Homo sapiens]
gi|119627858|gb|EAX07453.1| high-mobility group box 4 [Homo sapiens]
Length = 186
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAV 84
DP P+RPPS+F +F ++ K+E+PN V
Sbjct: 89 DPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVV 121
>gi|332254661|ref|XP_003276450.1| PREDICTED: high mobility group protein B4 [Nomascus leucogenys]
Length = 189
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAV 84
DP P+RPPS+F +F ++ K+E+PN V
Sbjct: 89 DPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVV 121
>gi|219111369|ref|XP_002177436.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411971|gb|EEC51899.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]
Length = 147
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 23/36 (63%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK 82
K AKKDP+ PKRP SAF F R K++HP +K
Sbjct: 78 KRAKKDPSAPKRPMSAFLYFSLGRRSDLKKKHPEIK 113
>gi|412985385|emb|CCO18831.1| CG4797 [Bathycoccus prasinos]
Length = 669
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
+KDPN PKRP S + +F E R K+E+P+
Sbjct: 574 EKDPNAPKRPLSTYMIFSAEMRAKVKEENPD 604
>gi|414585862|tpg|DAA36433.1| TPA: HMG1 protein [Zea mays]
Length = 123
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 57 KRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KR + FF FL EFR Y ++HP +K V VS
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVS 51
>gi|444313359|ref|XP_004177337.1| hypothetical protein TBLA_0A00160 [Tetrapisispora blattae CBS 6284]
gi|387510376|emb|CCH57818.1| hypothetical protein TBLA_0A00160 [Tetrapisispora blattae CBS 6284]
Length = 400
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 5 RGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNK--RTKNVKSAKKDPNKPKRPPSA 62
R + + +V+ RK + K +NK RT+ K +DPN PKRP +A
Sbjct: 121 RSQNNINSGNPQVLTNSSTGKTSARKPIRKGKNKANKIHRTRAQKLKDRDPNLPKRPTNA 180
Query: 63 FFVFLEEFRKVYKQ 76
+ +F EE ++ KQ
Sbjct: 181 YLLFCEETKEKIKQ 194
>gi|332808386|ref|XP_513298.3| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B4 [Pan
troglodytes]
Length = 186
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAV 84
DP P+RPPS+F +F ++ K+E+PN V
Sbjct: 89 DPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVV 121
>gi|992639|gb|AAB08831.1| high mobility group protein-2 (HMG-2) [Ambystoma mexicanum]
Length = 216
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKR PSAFF+F E R K + P +
Sbjct: 92 DPNAPKRLPSAFFLFCSEHRLKIKADCPGL 121
>gi|444729006|gb|ELW69437.1| High mobility group protein B1 [Tupaia chinensis]
Length = 144
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
PN KRPPS F +F E+R K EHP +
Sbjct: 41 PNALKRPPSTFSLFCSEYRPQIKGEHPGL 69
>gi|428163656|gb|EKX32716.1| FACT complex subunit ssrp1 [Guillardia theta CCMP2712]
Length = 746
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK 82
KKDPN PKRP SA+ +F + R+ +E+P++K
Sbjct: 546 KKDPNAPKRPKSAWLLFCDAKREDIVKENPDIK 578
>gi|355757371|gb|EHH60896.1| hypothetical protein EGM_18788, partial [Macaca fascicularis]
Length = 189
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 4/39 (10%)
Query: 51 KDPNKPKRPPSAFFVF-LEEFRKVYKQEHPNVKAVSAVS 88
KDPN PKRPP AFF+F E+ K+ +EHP + +VS V+
Sbjct: 86 KDPNAPKRPPLAFFMFSSEDCPKI--KEHPGL-SVSDVA 121
>gi|71012570|ref|XP_758511.1| hypothetical protein UM02364.1 [Ustilago maydis 521]
gi|46098169|gb|EAK83402.1| hypothetical protein UM02364.1 [Ustilago maydis 521]
Length = 125
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
K+S S+ KRT AKKDP+ PKRP SA+ F ++ R+ K +P
Sbjct: 35 KSSTSTQKRTTK---AKKDPDAPKRPLSAYMFFSQDQRERVKNANP 77
>gi|7544638|gb|AAA73079.2| unknown [Saccharomyces cerevisiae]
Length = 183
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 10/68 (14%)
Query: 15 NEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVY 74
+E KP + A+ +LKAS+ + R + +K PKRP SA+F++L++ R +
Sbjct: 12 HESSKPTFNLAS----TLLKASKRTQTRNELMKQG------PKRPTSAYFLYLQDHRSQF 61
Query: 75 KQEHPNVK 82
+E+P ++
Sbjct: 62 VKENPTLR 69
>gi|195627962|gb|ACG35811.1| HMG1/2-like protein [Zea mays]
Length = 123
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 57 KRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KR + FF FL EFR Y ++HP +K V VS
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVS 51
>gi|342874398|gb|EGU76412.1| hypothetical protein FOXB_13090 [Fusarium oxysporum Fo5176]
Length = 102
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KA+ + + K KKDPN PKR SA+ F E R+ ++E+P +
Sbjct: 3 KAAAGKRGKAEKTKRGKKDPNAPKRGLSAYMFFANEQRENVREENPGI 50
>gi|297303892|ref|XP_002806292.1| PREDICTED: high mobility group-T protein-like [Macaca mulatta]
Length = 159
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 4/39 (10%)
Query: 51 KDPNKPKRPPSAFFVF-LEEFRKVYKQEHPNVKAVSAVS 88
KDPN PKRPP AFF+F E+ K+ +EHP + +VS V+
Sbjct: 55 KDPNAPKRPPLAFFMFSSEDCPKI--KEHPGL-SVSDVA 90
>gi|162460188|ref|NP_001105108.1| nucleosome/chromatin assembly factor D [Zea mays]
gi|4995921|emb|CAB44297.1| HMG1 protein [Zea mays]
Length = 123
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 57 KRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KR + FF FL EFR Y ++HP +K V VS
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVS 51
>gi|255715687|ref|XP_002554125.1| KLTH0E14850p [Lachancea thermotolerans]
gi|238935507|emb|CAR23688.1| KLTH0E14850p [Lachancea thermotolerans CBS 6340]
Length = 93
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 33 LKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+ A R + KRT KKDPN PKR SA+ F E R + + E+P V
Sbjct: 1 MSAPREAKKRTTR---RKKDPNAPKRALSAYMFFANENRDIVRAENPGV 46
>gi|241632349|ref|XP_002410341.1| structure-specific recognition protein, putative [Ixodes
scapularis]
gi|215503398|gb|EEC12892.1| structure-specific recognition protein, putative [Ixodes
scapularis]
Length = 730
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
++D NKPKR PSA+F++L E R+ K+++P
Sbjct: 549 ERDENKPKRAPSAYFLWLAENREQIKRDNPG 579
>gi|302309760|ref|XP_002999554.1| hypothetical protein [Candida glabrata CBS 138]
gi|196049084|emb|CAR57991.1| unnamed protein product [Candida glabrata]
Length = 93
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKR SA+ F E R + + E+P+V
Sbjct: 15 KKDPNAPKRALSAYMFFANENRDIVRSENPDV 46
>gi|367006853|ref|XP_003688157.1| hypothetical protein TPHA_0M01480 [Tetrapisispora phaffii CBS
4417]
gi|357526464|emb|CCE65723.1| hypothetical protein TPHA_0M01480 [Tetrapisispora phaffii CBS
4417]
Length = 93
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKR SA+ F E R + + E+P+V
Sbjct: 15 KKDPNAPKRAMSAYMFFANETRDIVRAENPDV 46
>gi|449550188|gb|EMD41153.1| hypothetical protein CERSUDRAFT_111715 [Ceriporiopsis subvermispora
B]
Length = 252
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 18 VKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQE 77
V P GKRK KR K VK DPN PKRP S++ +F + R K +
Sbjct: 65 VLPAGATPTGKRKGRGAEDGEGRKRVKKVK----DPNAPKRPASSYLLFQNDVRGELKGK 120
Query: 78 HPNV 81
P++
Sbjct: 121 FPDM 124
>gi|336272321|ref|XP_003350917.1| hypothetical protein SMAC_04223 [Sordaria macrospora k-hell]
gi|380090684|emb|CCC04854.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 103
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
AKKDPN PKR SA+ F E R+ ++E+P V
Sbjct: 19 AKKDPNAPKRGLSAYMFFANEQRENVREENPGV 51
>gi|397482786|ref|XP_003812597.1| PREDICTED: high mobility group protein B4 [Pan paniscus]
Length = 177
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAV 84
DP P+RPPS+F +F ++ K+E+PN V
Sbjct: 89 DPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVV 121
>gi|15236607|ref|NP_194111.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
gi|75266376|sp|Q9SUP7.1|HMGB6_ARATH RecName: Full=High mobility group B protein 6; AltName:
Full=Nucleosome/chromatin assembly factor group D 06;
Short=Nucleosome/chromatin assembly factor group D 6;
AltName: Full=WRKY transcription factor 53;
Short=AtWRKY53; Short=WRKY DNA-binding protein 53
gi|4454049|emb|CAA23046.1| 98b like protein [Arabidopsis thaliana]
gi|7269229|emb|CAB81298.1| 98b like protein [Arabidopsis thaliana]
gi|18377799|gb|AAL67049.1| putative 98b protein [Arabidopsis thaliana]
gi|20465867|gb|AAM20038.1| putative 98b protein [Arabidopsis thaliana]
gi|22022506|gb|AAM83212.1| putative 98b protein [Arabidopsis thaliana]
gi|332659407|gb|AEE84807.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
Length = 456
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
DPNKPK+P S++F+F ++ RK +E P + ++
Sbjct: 375 DPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTAL 412
>gi|410081503|ref|XP_003958331.1| hypothetical protein KAFR_0G01620 [Kazachstania africana CBS
2517]
gi|372464919|emb|CCF59196.1| hypothetical protein KAFR_0G01620 [Kazachstania africana CBS
2517]
Length = 95
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K + KKDPN PKR SA+ F E R + + E+P+V
Sbjct: 9 KRTQRRKKDPNAPKRALSAYMFFANENRDIVRSENPDV 46
>gi|401626897|gb|EJS44815.1| nhp6bp [Saccharomyces arboricola H-6]
Length = 99
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKR SA+ F E R + + E+P+V
Sbjct: 21 KKDPNAPKRGLSAYMFFANETRDIVRSENPDV 52
>gi|74628491|sp|Q7S045.1|NHP6_NEUCR RecName: Full=Non-histone chromosomal protein 6
gi|336464617|gb|EGO52857.1| Non-histone chromosomal protein 6 [Neurospora tetrasperma FGSC
2508]
gi|350296712|gb|EGZ77689.1| Non-histone chromosomal protein 6 [Neurospora tetrasperma FGSC
2509]
Length = 103
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
AKKDPN PKR SA+ F E R+ ++E+P V
Sbjct: 19 AKKDPNAPKRGLSAYMFFANEQRENVREENPGV 51
>gi|321261806|ref|XP_003195622.1| ferric reductase transmembrane component 2 precursor [Cryptococcus
gattii WM276]
gi|317462096|gb|ADV23835.1| ferric reductase transmembrane component 2 precursor, putative
[Cryptococcus gattii WM276]
Length = 1006
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAF 63
+D+ +V P E+R + K + K R+ +++ KSA K P P PPS F
Sbjct: 705 EDEEDVNDPAENRLSNKLEQQGKLRRARSRKIAKRKSAAKLPRTPSYPPSRF 756
>gi|410966739|ref|XP_003989887.1| PREDICTED: high mobility group protein B4 [Felis catus]
Length = 193
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAV 84
DP P+RPPS+F +F ++ K+E+PN V
Sbjct: 91 DPYAPRRPPSSFLLFCQDHYAQLKRENPNWSVV 123
>gi|444717985|gb|ELW58803.1| High mobility group protein B1 [Tupaia chinensis]
Length = 111
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN K PPSAFF+F E+ K E P +
Sbjct: 39 KDPNAAKSPPSAFFLFCSEYHPKIKGELPGL 69
>gi|440895123|gb|ELR47392.1| Putative upstream-binding factor 1-like protein 1, partial [Bos
grunniens mutus]
Length = 389
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 29 RKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
++ +L+A + N + K KK P+ PK+P +A+ FL+E R Y Q+HP + +
Sbjct: 74 KELILEAKENINNSKR--KKHKKHPDLPKKPLTAYLRFLKEMRPQYLQKHPKMSNQELIK 131
Query: 89 I 89
+
Sbjct: 132 V 132
>gi|365982187|ref|XP_003667927.1| hypothetical protein NDAI_0A05290 [Naumovozyma dairenensis CBS
421]
gi|343766693|emb|CCD22684.1| hypothetical protein NDAI_0A05290 [Naumovozyma dairenensis CBS
421]
Length = 93
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKR SA+ F + R + K E+PN+
Sbjct: 15 KKDPNAPKRGLSAYMFFANDNRDIVKAENPNI 46
>gi|225556517|gb|EEH04805.1| non-histone chromosomal protein 6 [Ajellomyces capsulatus G186AR]
Length = 102
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KASR + R+ ++ KKDPN PKR SA+ F E R+ ++E+P +
Sbjct: 5 KASRKTKPRS--IEKKKKDPNAPKRGLSAYMFFANEQRENVREENPGI 50
>gi|146163497|ref|XP_001011529.2| HMG box family protein [Tetrahymena thermophila]
gi|146146042|gb|EAR91284.2| HMG box family protein [Tetrahymena thermophila SB210]
Length = 2400
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
++ NK S KDP+ PK+P +A+ ++ + ++ + Q++PN
Sbjct: 2189 KTGNKSGVPKNSEIKDPDMPKKPSTAYILYFKNRKEKFLQQYPN 2232
>gi|164422576|ref|XP_957906.2| hypothetical protein NCU09995 [Neurospora crassa OR74A]
gi|157069727|gb|EAA28670.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 95
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
AKKDPN PKR SA+ F E R+ ++E+P V
Sbjct: 19 AKKDPNAPKRGLSAYMFFANEQRENVREENPGV 51
>gi|156553871|ref|XP_001600877.1| PREDICTED: FACT complex subunit Ssrp1-like [Nasonia vitripennis]
Length = 735
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
+KD NKPKRP SA+ ++L R+ K ++P +K V
Sbjct: 545 EKDENKPKRPASAYMLYLNSVREEIKAKYPGLKVTEVV 582
>gi|299741148|ref|XP_001834261.2| non-histone chromosomal protein 6 [Coprinopsis cinerea
okayama7#130]
gi|298404577|gb|EAU87573.2| non-histone chromosomal protein 6 [Coprinopsis cinerea
okayama7#130]
Length = 184
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 23 DRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
D A KRKA KA ++ R KS KKDP KPKR SA+ F +++R+ K E+P+
Sbjct: 66 DSAKPKRKAAEKAEKAP--RAAASKS-KKDPLKPKRALSAYMFFSQDWRERIKAENPDA 121
>gi|110287688|sp|Q4PBZ9.2|NHP6_USTMA RecName: Full=Non-histone chromosomal protein 6
Length = 99
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
K+S S+ KRT AKKDP+ PKRP SA+ F ++ R+ K +P
Sbjct: 9 KSSTSTQKRTT---KAKKDPDAPKRPLSAYMFFSQDQRERVKNANP 51
>gi|224080027|ref|XP_002305996.1| high mobility group family [Populus trichocarpa]
gi|222848960|gb|EEE86507.1| high mobility group family [Populus trichocarpa]
Length = 165
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 24/28 (85%)
Query: 60 PSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
P+AFF FLE+FRK +++++P+VK++ V
Sbjct: 81 PTAFFYFLEDFRKEFQEQNPDVKSMREV 108
>gi|395857899|ref|XP_003801318.1| PREDICTED: high mobility group protein B4 [Otolemur garnettii]
Length = 187
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAV 84
DP P+RPPS+F +F ++ K+E+PN V
Sbjct: 89 DPQAPRRPPSSFLLFCKDHYAQLKRENPNWSVV 121
>gi|392584923|gb|EIW74265.1| hypothetical protein CONPUDRAFT_160308 [Coniophora puteana
RWD-64-598 SS2]
Length = 370
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFR 71
K +K+ KS KDPN PK+P SA+F+FL+ R
Sbjct: 306 KASKSRKSNFKDPNAPKKPLSAYFMFLQRIR 336
>gi|346324407|gb|EGX94004.1| nucleosome binding protein [Cordyceps militaris CM01]
Length = 96
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K AKKDPN PKR SA+ F E R ++E+P V
Sbjct: 17 KRAKKDPNAPKRGLSAYMFFANEQRDNVREENPGV 51
>gi|170106119|ref|XP_001884271.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164640617|gb|EDR04881.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 597
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 6 GKGAVKKDKNEVVKPVEDRAA-----GKRKA-VLKASRSSNKRTKNVKSAKKDPNKPKRP 59
+ + D EV++ ++ A GKRKA V + + + KDPN PKRP
Sbjct: 82 AESILGSDAFEVLQHLQQSADPAPTKGKRKAAVTEDEPLDGTKKRKRIIKPKDPNAPKRP 141
Query: 60 PSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
S++ ++ RK K++HP + +++
Sbjct: 142 ASSYILYQNNVRKELKEQHPEMNNADLLTM 171
>gi|339253262|ref|XP_003371854.1| putative HMG box [Trichinella spiralis]
gi|316967828|gb|EFV52201.1| putative HMG box [Trichinella spiralis]
Length = 483
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
KR + KKDPN+P++P SA+ +F + + K ++PN
Sbjct: 212 KRQGRKRKPKKDPNEPQKPVSAYALFFRDTQATIKGQNPN 251
>gi|395859165|ref|XP_003801914.1| PREDICTED: high mobility group protein B1-like [Otolemur garnettii]
Length = 220
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 45 NVKSAKKDPNKPKRPPSAFFVFLEEF 70
K KD N PKRPPSAFF+F E+
Sbjct: 105 ETKKKSKDLNAPKRPPSAFFLFCSEY 130
>gi|392343504|ref|XP_003754904.1| PREDICTED: high mobility group protein B4-like [Rattus norvegicus]
gi|392356039|ref|XP_003752197.1| PREDICTED: high mobility group protein B4-like [Rattus norvegicus]
Length = 168
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 24/30 (80%), Gaps = 2/30 (6%)
Query: 52 DPNKPKRPPSAFFVF-LEEFRKVYKQEHPN 80
DPN P++PPS+F +F ++ F ++ K++HPN
Sbjct: 89 DPNAPRKPPSSFLLFSMDHFDEI-KEQHPN 117
>gi|301115146|ref|XP_002905302.1| formin-homology 2 domain-containing protein [Phytophthora infestans
T30-4]
gi|262110091|gb|EEY68143.1| formin-homology 2 domain-containing protein [Phytophthora infestans
T30-4]
Length = 1846
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 15 NEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKS-AKKDPNKPKRPPSAFFVFLEEFRKV 73
EVVKP DRA + + + S KR + S +DP+ P P AFF F KV
Sbjct: 1674 QEVVKPFADRAKKASEQIAEGLESMTKRFEETASFYGEDPSSPDCGPDAFFSIFYSFAKV 1733
Query: 74 YK 75
+
Sbjct: 1734 LQ 1735
>gi|367020358|ref|XP_003659464.1| hypothetical protein MYCTH_2296547 [Myceliophthora thermophila
ATCC 42464]
gi|347006731|gb|AEO54219.1| hypothetical protein MYCTH_2296547 [Myceliophthora thermophila
ATCC 42464]
Length = 101
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K +KKDPN PKR SA+ F E R+ ++E+P V
Sbjct: 15 KRSKKDPNAPKRGLSAYMFFANEQRENVREENPGV 49
>gi|241604781|ref|XP_002405946.1| high mobility group protein C, putative [Ixodes scapularis]
gi|215502605|gb|EEC12099.1| high mobility group protein C, putative [Ixodes scapularis]
Length = 134
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
T+ V+S P PKRPPS + +FL + RK +++P +K V
Sbjct: 20 TQKVRSDIALPPAPKRPPSGYILFLNDTRKTVMRQNPALKPTEVV 64
>gi|255544145|ref|XP_002513135.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223548146|gb|EEF49638.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 196
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 24/30 (80%)
Query: 59 PPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
PP+AFF+FL+EFRK +K+ +P+ K V V+
Sbjct: 103 PPTAFFIFLDEFRKTFKEANPDSKDVKRVA 132
>gi|332025514|gb|EGI65677.1| FACT complex subunit Ssrp1 [Acromyrmex echinatior]
Length = 721
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
++D NKPKRPPSAF ++L R K ++P +
Sbjct: 532 ERDENKPKRPPSAFMLWLSSARDSIKADNPGL 563
>gi|431838509|gb|ELK00441.1| Putative upstream-binding factor 1-like protein 3/5 [Pteropus
alecto]
Length = 475
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 32 VLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
VL+A N K+ K +K P+ PK+P +A+F F +E R Y Q+HP +
Sbjct: 141 VLEAKERVNNLHKS-KKCRKHPDLPKKPMTAYFRFFKEKRPQYAQKHPGL 189
>gi|441639466|ref|XP_004090212.1| PREDICTED: high mobility group protein B3-like [Nomascus
leucogenys]
Length = 131
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN P+RP S FF+F EF K +P +
Sbjct: 27 DPNAPQRPLSGFFLFCSEFCPEIKSTNPGI 56
>gi|219129568|ref|XP_002184957.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403452|gb|EEC43404.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 133
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 38 SSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+NKRT KDP PKRP SAF F + R K++HP+
Sbjct: 50 QANKRTP------KDPTAPKRPMSAFLAFSNKRRAALKRQHPDA 87
>gi|442749551|gb|JAA66935.1| Putative transcription factor a mitochondrial [Ixodes ricinus]
Length = 262
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
T+ V+S P PKRPPS + +FL + RK +++P +K V
Sbjct: 45 TQKVRSDVALPPAPKRPPSGYILFLNDTRKTVMRQNPALKPTEVV 89
>gi|118343822|ref|NP_001071733.1| transcription factor protein [Ciona intestinalis]
gi|70569841|dbj|BAE06487.1| transcription factor protein [Ciona intestinalis]
Length = 204
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
DPN PKRP SAFF+F + R K E+P
Sbjct: 94 DPNAPKRPQSAFFLFCADRRAPLKAENPG 122
>gi|255637700|gb|ACU19173.1| unknown [Glycine max]
Length = 478
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN+PK+P S+F + +E RK ++E P +
Sbjct: 392 DPNRPKKPASSFILLSKEARKTLQEERPGI 421
>gi|410902783|ref|XP_003964873.1| PREDICTED: nucleolar transcription factor 1-like [Takifugu
rubripes]
Length = 736
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
P KPKRP SA F+F EE R +QE P++
Sbjct: 397 PEKPKRPISAMFIFSEEKRPKLQQERPDL 425
>gi|193610630|ref|XP_001945537.1| PREDICTED: non-histone protein 10-like [Acyrthosiphon pisum]
Length = 230
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 41 KRTKNVKSA-KKDPNKPKRPPSAFFVFLEEFRKV 73
K+ N+KS KKDPN PKRP + FF F +E R +
Sbjct: 124 KKNLNIKSTEKKDPNLPKRPANPFFRFCQEQRPI 157
>gi|403217833|emb|CCK72326.1| hypothetical protein KNAG_0J02470 [Kazachstania naganishii CBS
8797]
Length = 92
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKR SA+ F E R + + E+P+V
Sbjct: 14 KKDPNAPKRALSAYMFFANENRDIVRSENPDV 45
>gi|443920186|gb|ELU40161.1| HMG (high mobility group) box domain-containing protein
[Rhizoctonia solani AG-1 IA]
Length = 249
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP +++ +F + R +++HP +
Sbjct: 61 KDPNAPKRPATSYIMFQNDIRDELRRKHPGL 91
>gi|302652822|ref|XP_003018251.1| hypothetical protein TRV_07738 [Trichophyton verrucosum HKI 0517]
gi|291181876|gb|EFE37606.1| hypothetical protein TRV_07738 [Trichophyton verrucosum HKI 0517]
Length = 132
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKR SA+ +F E R ++E+PN+
Sbjct: 60 DPNAPKRGLSAYMIFANEQRAAVREENPNI 89
>gi|393215345|gb|EJD00836.1| hypothetical protein FOMMEDRAFT_51667, partial [Fomitiporia
mediterranea MF3/22]
Length = 61
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN P+RPPSA+ +F E R K +P +
Sbjct: 9 KDPNAPRRPPSAYIIFQNEVRDEMKSINPGM 39
>gi|385302209|gb|EIF46351.1| nucleosome binding protein [Dekkera bruxellensis AWRI1499]
Length = 91
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKR SA+ F E R + + E+P +
Sbjct: 9 KKDPNAPKRSLSAYMFFANEQRDIVRAENPGI 40
>gi|268571579|ref|XP_002641089.1| C. briggsae CBR-HMG-1.2 protein [Caenorhabditis briggsae]
Length = 239
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK 82
K AKKDP+ PKR SAFF + ++ R + +HP+ K
Sbjct: 128 KRAKKDPHAPKRALSAFFFYSQDKRPEIQGQHPDWK 163
>gi|326934316|ref|XP_003213237.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily E member
1-related-like [Meleagris gallopavo]
Length = 329
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 9 AVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLE 68
A+K++K EV + ++ G+ + V K K+ K + PN PK P + + FL
Sbjct: 27 AIKQEKGEVARASGEKPHGEEEPVKKRGWPKGKKRKKIL-----PNGPKAPVTGYVRFLN 81
Query: 69 EFRKVYKQEHPNV 81
E R+ + +HP++
Sbjct: 82 ERREQIRTQHPDL 94
>gi|145480005|ref|XP_001426025.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393097|emb|CAK58627.1| unnamed protein product [Paramecium tetraurelia]
Length = 223
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K ++DPN PKRP +AFF+F +++R+ + +P +
Sbjct: 24 KKKERDPNAPKRPLTAFFLFSQKYREKVLERNPGI 58
>gi|407926962|gb|EKG19868.1| High mobility group HMG1/HMG2 [Macrophomina phaseolina MS6]
Length = 106
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 37 RSSNKRTKNVKSA---KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK 82
++++++TK K+ KKDPN PKR SA+ F + R ++E+P +K
Sbjct: 5 KTTSRKTKASKADGKKKKDPNAPKRGLSAYMFFANDMRDKVREENPGIK 53
>gi|334348475|ref|XP_001362307.2| PREDICTED: HMG box-containing protein 1 [Monodelphis domestica]
Length = 525
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHP--NVKAVSAV 87
KA +S + T + SA PNK KRP +AF +F +++R Y Q +P + +A+S +
Sbjct: 424 KAVKSHSSGTTSTVSATS-PNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVI 478
>gi|349576469|dbj|GAA21640.1| K7_Nhp6bp [Saccharomyces cerevisiae Kyokai no. 7]
Length = 99
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKR SA+ F E R + + E+P+V
Sbjct: 21 KKDPNAPKRGLSAYMFFANENRDIVRSENPDV 52
>gi|339046261|ref|NP_009647.2| Nhp6bp [Saccharomyces cerevisiae S288c]
gi|341942236|sp|P11633.3|NHP6B_YEAST RecName: Full=Non-histone chromosomal protein 6B
gi|4036|emb|CAA33378.1| unnamed protein product [Saccharomyces cerevisiae]
gi|45271022|gb|AAS56892.1| YBR089C-A [Saccharomyces cerevisiae]
gi|151946484|gb|EDN64706.1| nonhistone chromosomal protein [Saccharomyces cerevisiae YJM789]
gi|190408749|gb|EDV12014.1| 11 kDa nonhistone chromosomal protein [Saccharomyces cerevisiae
RM11-1a]
gi|256274037|gb|EEU08951.1| Nhp6bp [Saccharomyces cerevisiae JAY291]
gi|290878106|emb|CBK39165.1| Nhp6bp [Saccharomyces cerevisiae EC1118]
gi|333454471|tpg|DAA07210.2| TPA: Nhp6bp [Saccharomyces cerevisiae S288c]
Length = 99
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKR SA+ F E R + + E+P+V
Sbjct: 21 KKDPNAPKRGLSAYMFFANENRDIVRSENPDV 52
>gi|444712566|gb|ELW53487.1| High mobility group protein B1 [Tupaia chinensis]
Length = 162
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN R P AFF+F E+ K EHP +
Sbjct: 90 KDPNASMRSPLAFFLFCSEYHPKIKGEHPGL 120
>gi|327273566|ref|XP_003221551.1| PREDICTED: HMG box-containing protein 1-like [Anolis carolinensis]
Length = 575
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHP--NVKAVSAV 87
KA +S + T SA PNK KRP +AF +F +++R Y Q +P + +A+S +
Sbjct: 428 KAGKSHSSGTATTVSATS-PNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVI 482
>gi|440804471|gb|ELR25348.1| HMG (high mobility group) box domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 205
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PK+P SAFF F ++ R K E+P+
Sbjct: 99 KKDPNAPKKPCSAFFHFSKKMRPRIKDENPDA 130
>gi|428177903|gb|EKX46781.1| hypothetical protein GUITHDRAFT_45296, partial [Guillardia theta
CCMP2712]
Length = 182
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 15 NEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVY 74
+E KP DRA LKA K + + NKPK+ SA+ +F+ E R
Sbjct: 53 DEAKKPWVDRAE-----ELKAQYKEQKEQFDAEKKAAQGNKPKKARSAYIIFVSETRAKV 107
Query: 75 KQEHPNVKAVSAVSI 89
K+EHP+++ +++
Sbjct: 108 KEEHPDMEPKHVLTL 122
>gi|158297853|ref|XP_318023.4| AGAP004791-PA [Anopheles gambiae str. PEST]
gi|158297857|ref|XP_001689081.1| AGAP004789-PA [Anopheles gambiae str. PEST]
gi|157014526|gb|EAA13138.4| AGAP004791-PA [Anopheles gambiae str. PEST]
gi|157014528|gb|EDO63498.1| AGAP004789-PA [Anopheles gambiae str. PEST]
Length = 324
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
A KD N PK P + + ++ E R+ +Q+HPN+ + I
Sbjct: 67 APKDANAPKHPLTGYVRYMNEHREGVRQKHPNLTPIEVTKI 107
>gi|239791298|dbj|BAH72134.1| ACYPI010120 [Acyrthosiphon pisum]
Length = 230
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 41 KRTKNVKSA-KKDPNKPKRPPSAFFVFLEEFRKV 73
K+ N+KS KKDPN PKRP + FF F +E R +
Sbjct: 124 KKNLNIKSTEKKDPNLPKRPANPFFRFCQEQRPI 157
>gi|66358646|ref|XP_626501.1| high mobility group (HMG)-box [Cryptosporidium parvum Iowa II]
gi|67611890|ref|XP_667184.1| high mobility group box 1 [Cryptosporidium hominis TU502]
gi|46227787|gb|EAK88707.1| high mobility group (HMG)-box [Cryptosporidium parvum Iowa II]
gi|54658295|gb|EAL36956.1| high mobility group box 1 [Cryptosporidium hominis]
gi|323508511|dbj|BAJ77149.1| cgd2_3070 [Cryptosporidium parvum]
Length = 182
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
A +DPNKPKRP +A+ ++ E R+ ++ PN
Sbjct: 79 APEDPNKPKRPHTAYTLWCEHIRQKVRENDPN 110
>gi|91088019|ref|XP_974107.1| PREDICTED: similar to GA18041-PA [Tribolium castaneum]
gi|270012067|gb|EFA08515.1| hypothetical protein TcasGA2_TC006168 [Tribolium castaneum]
Length = 240
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
PNKPK+P + +F F+++ R +++PN+K VS
Sbjct: 43 PNKPKKPLTPYFKFIQDHRPALLKQNPNLKVTQVVS 78
>gi|326911218|ref|XP_003201958.1| PREDICTED: HMG box-containing protein 1-like [Meleagris gallopavo]
Length = 517
Score = 35.0 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHP--NVKAVSAV 87
KA +S T + SA PNK KRP +AF +F +++R Y Q +P + +A+S +
Sbjct: 416 KAGKSHGSGTASTVSATS-PNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVI 470
>gi|429860623|gb|ELA35353.1| nucleosome binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 103
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
K KKDPN PKR SA+ F E R+ ++E+P +
Sbjct: 17 KRGKKDPNAPKRGLSAYMFFANEQRENVREENPGI 51
>gi|225681708|gb|EEH19992.1| nucleosome binding protein [Paracoccidioides brasiliensis Pb03]
Length = 103
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 42 RTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
+++ V+ KKDPN PKR SA+ F E R ++E+P +
Sbjct: 12 KSRGVEKKKKDPNAPKRGLSAYMFFANEQRDNVREENPGI 51
>gi|170091612|ref|XP_001877028.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648521|gb|EDR12764.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 564
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 28 KRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFR 71
KR+ +A++ K K+ KS KDPN PK+P SA+F+FL+ R
Sbjct: 419 KRENAFRAAQ--RKAGKSRKSNIKDPNAPKKPLSAYFMFLQRIR 460
>gi|339234763|ref|XP_003378936.1| thymus high mobility group box protein TOX [Trichinella spiralis]
gi|316978470|gb|EFV61455.1| thymus high mobility group box protein TOX [Trichinella spiralis]
Length = 328
Score = 35.0 bits (79), Expect = 5.2, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 30 KAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
K + SR+ +R ++ +KDPN+P++P SA+ +F + + K ++PN
Sbjct: 161 KMTVVKSRTPKRR----QNKRKDPNEPQKPVSAYALFFRDTQATIKGQNPN 207
>gi|307188161|gb|EFN72993.1| TOX high mobility group box family member 3 [Camponotus floridanus]
Length = 518
Score = 35.0 bits (79), Expect = 5.2, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
+DPN+P++P SA+ +F + + V K +HPN
Sbjct: 240 RDPNEPQKPVSAYALFFRDTQAVIKGKHPN 269
>gi|395539165|ref|XP_003771543.1| PREDICTED: HMG box-containing protein 1 [Sarcophilus harrisii]
Length = 525
Score = 35.0 bits (79), Expect = 5.4, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHP--NVKAVSAV 87
KA +S + T + SA PNK KRP +AF +F +++R Y Q +P + +A+S +
Sbjct: 424 KAVKSHSSGTTSTVSATS-PNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVI 478
>gi|365762037|gb|EHN03653.1| Nhp6bp [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
gi|401841847|gb|EJT44170.1| NHP6B-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 102
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKR SA+ F E R + + E+P+V
Sbjct: 24 KKDPNAPKRGLSAYMFFANENRDIVRSENPDV 55
>gi|313747412|ref|NP_001186383.1| HMG box-containing protein 1 [Gallus gallus]
Length = 517
Score = 35.0 bits (79), Expect = 5.4, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHP--NVKAVSAV 87
KA +S T + SA PNK KRP +AF +F +++R Y Q +P + +A+S +
Sbjct: 416 KAGKSHGSGTASTVSATS-PNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVI 470
>gi|443927140|gb|ELU45664.1| EXP1-like protein [Rhizoctonia solani AG-1 IA]
Length = 715
Score = 35.0 bits (79), Expect = 5.4, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 32 VLKASRSSNKRT-KNVKSAKKDPNKPKRPPSAFFVFLEEFR 71
V A RS+ ++ K+ +S KDPN PK+P SA+F+FL+ R
Sbjct: 493 VENAFRSAQRKAGKSRRSNLKDPNAPKKPLSAYFMFLQWIR 533
>gi|393219482|gb|EJD04969.1| HMG-box [Fomitiporia mediterranea MF3/22]
Length = 114
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKR SA+ F +++R+ K E+P+
Sbjct: 26 GKKDPNAPKRALSAYMFFSQDWRERVKAENPDA 58
>gi|340504145|gb|EGR30621.1| nonhistone chromosomal protein lg, putative [Ichthyophthirius
multifiliis]
Length = 87
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
P PKRP S+FF+F +E + K++HPN + +S+
Sbjct: 1 PLPPKRPLSSFFLFKQENHEKVKKQHPNARITQLISM 37
>gi|432915279|ref|XP_004079157.1| PREDICTED: TOX high mobility group box family member 4-A-like
[Oryzias latipes]
Length = 611
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 24 RAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
R+ GK AV A ++ + K K KKDPN+P++P SA+ +F + + K ++PN
Sbjct: 222 RSGGKPAAVAPAPETTTAK-KGRK--KKDPNEPQKPVSAYALFFRDTQAAIKGQNPN 275
>gi|307170751|gb|EFN62876.1| High mobility group protein 20A [Camponotus floridanus]
Length = 328
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 28 KRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KR A+ + ++ RTK K +D PK+P S +F+FL + R+ + E+P++
Sbjct: 50 KRNAIPTGNSNAPNRTKKRKKTPRDATAPKQPLSGYFLFLNDRREKVRSENPSL 103
>gi|71027705|ref|XP_763496.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350449|gb|EAN31213.1| high mobility group protein, putative [Theileria parva]
Length = 94
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 4/55 (7%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV-KAVSAV 87
K S+S+ K++K AKKDPN PKR S++ F +E R +E+P++ + V+AV
Sbjct: 4 KVSKSAGKKSKR---AKKDPNAPKRALSSYMFFAKEKRAELVRENPDLARDVAAV 55
>gi|397640872|gb|EJK74364.1| hypothetical protein THAOC_03961 [Thalassiosira oceanica]
Length = 1104
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK 82
AKKDPN PKR SAFF++ R K+ +P K
Sbjct: 1024 AKKDPNAPKRNQSAFFLYSNATRNDVKEANPEAK 1057
>gi|336373684|gb|EGO02022.1| hypothetical protein SERLA73DRAFT_177720 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386499|gb|EGO27645.1| hypothetical protein SERLADRAFT_461466 [Serpula lacrymans var.
lacrymans S7.9]
Length = 365
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFR 71
K+ KS KDPN PK+P SA+F+FL+ R
Sbjct: 225 KSRKSNIKDPNAPKKPLSAYFMFLQRIR 252
>gi|409079498|gb|EKM79859.1| hypothetical protein AGABI1DRAFT_57086 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 547
Score = 35.0 bits (79), Expect = 5.8, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 28 KRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 78
KR+ +A++ K K+ KS KDPN PK+P SA+F+FL+ R K H
Sbjct: 402 KRENAYRAAQ--RKAGKSRKSNIKDPNAPKKPLSAYFMFLQRIRANPKLVH 450
>gi|326935585|ref|XP_003213850.1| PREDICTED: nucleolar transcription factor 1-like, partial
[Meleagris gallopavo]
Length = 493
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
++ K KPKRP SA F+F EE RK ++E P +
Sbjct: 178 ETGKASSEKPKRPISAMFIFSEEKRKQLQEERPEL 212
>gi|449278833|gb|EMC86572.1| HMG box-containing protein 1 [Columba livia]
Length = 515
Score = 35.0 bits (79), Expect = 6.1, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHP--NVKAVSAV 87
KA +S + T + SA PNK KRP +AF +F +++R Y Q +P + +A+S +
Sbjct: 416 KAGKSHSSGTASTVSATS-PNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVI 470
>gi|116206850|ref|XP_001229234.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88183315|gb|EAQ90783.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 96
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KA++S + + + KKDPN PKR SA+ F E R ++E+P V
Sbjct: 3 KAAKSRSGKAEKKTRQKKDPNAPKRGLSAYMFFANEQRDNVREENPGV 50
>gi|118401491|ref|XP_001033066.1| HMG box family protein [Tetrahymena thermophila]
gi|259016283|sp|P40631.2|MLH_TETTS RecName: Full=Micronuclear linker histone polyprotein; Short=MIC
LH; Contains: RecName: Full=Micronuclear linker
histone-alpha; Contains: RecName: Full=Micronuclear
linker histone-beta; Contains: RecName:
Full=Micronuclear linker histone-delta; Contains:
RecName: Full=Micronuclear linker histone-gamma
gi|89287412|gb|EAR85403.1| HMG box family protein [Tetrahymena thermophila SB210]
Length = 633
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
P KPK+P +FF FLEE R+ Y +H ++ + I
Sbjct: 93 PEKPKKPIGSFFRFLEENRQKYAAKHKDLTNAKILKI 129
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.310 0.126 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,212,722,626
Number of Sequences: 23463169
Number of extensions: 36949641
Number of successful extensions: 158105
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1670
Number of HSP's successfully gapped in prelim test: 223
Number of HSP's that attempted gapping in prelim test: 155532
Number of HSP's gapped (non-prelim): 2649
length of query: 91
length of database: 8,064,228,071
effective HSP length: 61
effective length of query: 30
effective length of database: 6,632,974,762
effective search space: 198989242860
effective search space used: 198989242860
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 69 (31.2 bits)