BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034563
(91 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49595|HMGB1_ARATH High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1
PE=1 SV=1
Length = 178
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 64/88 (72%), Gaps = 3/88 (3%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK +GK VK K E +KPV+DR GKRKA A + + + T+ K AKKDPNKPKR P
Sbjct: 1 MKTAKGKDKVKTTK-EALKPVDDRKVGKRKAP--AEKPTKRETRKEKKAKKDPNKPKRAP 57
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
SAFFVFLE+FR +K+E+PNVKAVSAV
Sbjct: 58 SAFFVFLEDFRVTFKKENPNVKAVSAVG 85
>sp|P40619|HMGL_IPONI HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1
Length = 144
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 38/46 (82%)
Query: 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
TK K A KDPNKPKRPPSAFFVF+E+FRK YK++HPN K+V+ V
Sbjct: 23 TKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVG 68
>sp|P26585|HMGL_SOYBN HMG1/2-like protein OS=Glycine max PE=2 SV=1
Length = 152
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/40 (80%), Positives = 35/40 (87%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
A KDPNKPKRPPSAFFVF+EEFRKV+ +EHP KAVSAV
Sbjct: 37 AAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVG 76
>sp|P93047|HMGB3_ARATH High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3
PE=1 SV=1
Length = 141
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 35/44 (79%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
K K A KDPNKPKRP SAFFVF+E+FR YK+EHP K+V+AV
Sbjct: 23 KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAV 66
>sp|P40620|HMGL_VICFA HMG1/2-like protein OS=Vicia faba PE=2 SV=1
Length = 149
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 34/38 (89%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
KDPNKPKRPPSAFFVF+ +FR+ YK++HPN K+V+AV
Sbjct: 40 KDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVG 77
>sp|P27347|MNB1B_MAIZE DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1
Length = 157
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 50/89 (56%), Gaps = 17/89 (19%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKS-AKKDPNKPKRP 59
MK + KGA K D VK S+ + K K K A KDPNKPKR
Sbjct: 1 MKGAKSKGAAKADAKLAVK----------------SKGAEKPAKGRKGKAGKDPNKPKRA 44
Query: 60 PSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
PSAFFVF+EEFRK +K+++P K+V+AV
Sbjct: 45 PSAFFVFMEEFRKEFKEKNPKNKSVAAVG 73
>sp|Q42344|HMGB4_ARATH High mobility group B protein 4 OS=Arabidopsis thaliana GN=HMGB4
PE=1 SV=1
Length = 138
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 33/41 (80%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
K KKDPN+PKRPPSAFFVFLE+FRK + +PN K+V+ V
Sbjct: 26 KKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATV 66
>sp|O49596|HMGB2_ARATH High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2
PE=1 SV=1
Length = 144
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 35/41 (85%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
K+A KDPNKPKRP SAFFVF+E+FR+ +K+E+P K+V+ V
Sbjct: 29 KAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATV 69
>sp|P40621|HMGL_WHEAT HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1
Length = 161
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 31/37 (83%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
DPNKPKR PSAFFVF+ EFR+ +KQ++P K+V+AV
Sbjct: 38 DPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVG 74
>sp|O49597|HMGB5_ARATH High mobility group B protein 5 OS=Arabidopsis thaliana GN=HMGB5
PE=2 SV=1
Length = 125
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Query: 36 SRSSNKRTK----NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
SRS++ R K V KDPN+PK+PPS FFVFL++FRK + +P+ K+V V
Sbjct: 10 SRSTDDRLKVRGNKVGKKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVG 66
>sp|Q8LDF9|HMGB7_ARATH High mobility group B protein 7 OS=Arabidopsis thaliana GN=HMGB7
PE=1 SV=1
Length = 241
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
K+T + K + NKPKRP +AFF+F+ +FRK +K EH A A I
Sbjct: 100 KKTNDEKKSSSTSNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKI 148
>sp|P07156|HMGB1_CRIGR High mobility group protein B1 (Fragment) OS=Cricetulus griseus
GN=HMGB1 PE=1 SV=1
Length = 180
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 55 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 85
>sp|P63159|HMGB1_RAT High mobility group protein B1 OS=Rattus norvegicus GN=Hmgb1 PE=1
SV=2
Length = 215
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>sp|A9RA84|HMGB1_PAPAN High mobility group protein B1 OS=Papio anubis GN=HMGB1 PE=3 SV=1
Length = 215
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>sp|P63158|HMGB1_MOUSE High mobility group protein B1 OS=Mus musculus GN=Hmgb1 PE=1 SV=2
Length = 215
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>sp|Q4R844|HMGB1_MACFA High mobility group protein B1 OS=Macaca fascicularis GN=HMGB1 PE=2
SV=3
Length = 215
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>sp|P09429|HMGB1_HUMAN High mobility group protein B1 OS=Homo sapiens GN=HMGB1 PE=1 SV=3
Length = 215
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>sp|Q08IE6|HMGB1_HORSE High mobility group protein B1 OS=Equus caballus GN=HMGB1 PE=2 SV=3
Length = 215
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>sp|Q6YKA4|HMGB1_CANFA High mobility group protein B1 OS=Canis familiaris GN=HMGB1 PE=2
SV=3
Length = 215
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>sp|B1MTB0|HMGB1_CALMO High mobility group protein B1 OS=Callicebus moloch GN=HMGB1 PE=3
SV=1
Length = 215
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>sp|B0CM99|HMGB1_CALJA High mobility group protein B1 OS=Callithrix jacchus GN=HMGB1 PE=3
SV=1
Length = 215
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>sp|P10103|HMGB1_BOVIN High mobility group protein B1 OS=Bos taurus GN=HMGB1 PE=1 SV=3
Length = 215
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>sp|P12682|HMGB1_PIG High mobility group protein B1 OS=Sus scrofa GN=HMGB1 PE=2 SV=3
Length = 215
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>sp|B2RPK0|HGB1A_HUMAN Putative high mobility group protein B1-like 1 OS=Homo sapiens
GN=HMGB1P1 PE=5 SV=1
Length = 211
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+ K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYHPKIKGEHPGL 120
>sp|O64702|HMG14_ARATH High mobility group B protein 14 OS=Arabidopsis thaliana
GN=HMGB14 PE=2 SV=2
Length = 151
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 27/32 (84%)
Query: 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
PK+P +AFF FL++FRK Y++E+P+VK++ +
Sbjct: 63 PKKPATAFFFFLDDFRKQYQEENPDVKSMREI 94
>sp|P23497|SP100_HUMAN Nuclear autoantigen Sp-100 OS=Homo sapiens GN=SP100 PE=1 SV=3
Length = 879
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
DPN PKRPP AFF+F E+R K EHP + V
Sbjct: 765 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVV 800
>sp|P26584|HMGB2_CHICK High mobility group protein B2 OS=Gallus gallus GN=HMGB2 PE=2 SV=2
Length = 207
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPSAFF+F E R K +HP +
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGL 120
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
K DPNKP+ S++ F++ R+ +K++HP+
Sbjct: 2 GKGDPNKPRGKMSSYAYFVQTCREEHKKKHPD 33
>sp|Q9N1Q7|SP100_PANTR Nuclear autoantigen Sp-100 (Fragment) OS=Pan troglodytes GN=SP100
PE=2 SV=1
Length = 215
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNV--------KSAKKDPNKPKRPPSAF 63
K ++E+ K + + GK + + KA ++ +R K KDPN PKRPP AF
Sbjct: 72 KKRSEMWKTIFAKEKGKFEDMAKADKAHYEREMKTYIPPKGEKKKKFKDPNAPKRPPLAF 131
Query: 64 FVFLEEFRKVYKQEHPNV 81
F+F E+R K EHP +
Sbjct: 132 FLFCSEYRPKIKGEHPGL 149
>sp|Q9N1Q5|SP100_HYLLA Nuclear autoantigen Sp-100 (Fragment) OS=Hylobates lar GN=SP100
PE=2 SV=1
Length = 242
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPP AFF+F E+R K EHP +
Sbjct: 139 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGL 168
>sp|Q9N1Q6|SP100_GORGO Nuclear autoantigen Sp-100 (Fragment) OS=Gorilla gorilla gorilla
GN=SP100 PE=2 SV=1
Length = 225
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPP AFF+F E+R K EHP +
Sbjct: 114 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGL 143
>sp|P40618|HMGB3_CHICK High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2
Length = 202
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPSAFF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSAFFLFCSEFRPKIKSTNPGI 118
>sp|Q32L31|HMGB3_BOVIN High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2
Length = 200
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI 118
>sp|O15347|HMGB3_HUMAN High mobility group protein B3 OS=Homo sapiens GN=HMGB3 PE=1 SV=4
Length = 200
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>sp|O54879|HMGB3_MOUSE High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3
Length = 200
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
>sp|P36194|HMGB1_CHICK High mobility group protein B1 OS=Gallus gallus GN=HMGB1 PE=2 SV=2
Length = 201
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPN PKRPPS FF+F EFR K +P +
Sbjct: 88 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 117
>sp|P0C6E5|HMG3M_HUMAN Putative high mobility group protein B3-like protein OS=Homo
sapiens PE=5 SV=1
Length = 187
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KKDPN PKRPPS FF+F EF K +P +
Sbjct: 86 KKDPNAPKRPPSGFFLFCSEFCPKSKSTNPGI 117
>sp|Q9T012|HMG13_ARATH High mobility group B protein 13 OS=Arabidopsis thaliana GN=HMGB13
PE=2 SV=1
Length = 446
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
DPNKPK+P S++F+F ++ RK +EHP +
Sbjct: 368 DPNKPKKPTSSYFLFCKDARKSVLEEHPGI 397
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVS 88
DP KPK+P SA+ ++ E R K E+ +V V+ ++
Sbjct: 242 DPLKPKQPISAYLIYANERRAALKGENKSVIEVAKMA 278
>sp|P07746|HMGT_ONCMY High mobility group-T protein OS=Oncorhynchus mykiss PE=2 SV=2
Length = 204
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRP SAFF+F +FR K E P +
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETPGL 119
>sp|P26583|HMGB2_HUMAN High mobility group protein B2 OS=Homo sapiens GN=HMGB2 PE=1 SV=2
Length = 209
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
K DPNKP+ S++ F++ R+ +K++HP+
Sbjct: 2 GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPD 33
>sp|P40673|HMGB2_BOVIN High mobility group protein B2 OS=Bos taurus GN=HMGB2 PE=1 SV=3
Length = 209
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
K DPNKP+ S++ F++ R+ +K++HP+
Sbjct: 2 GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPD 33
>sp|P52925|HMGB2_RAT High mobility group protein B2 OS=Rattus norvegicus GN=Hmgb2 PE=2
SV=2
Length = 210
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
K DPNKP+ S++ F++ R+ +K++HP+
Sbjct: 2 GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPD 33
>sp|P17741|HMGB2_PIG High mobility group protein B2 OS=Sus scrofa GN=HMGB2 PE=1 SV=2
Length = 210
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
K DPNKP+ S++ F++ R+ +K++HP+
Sbjct: 2 GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPD 33
>sp|Q4H2R2|SSRP1_CIOIN FACT complex subunit SSRP1 OS=Ciona intestinalis GN=SSRP1 PE=2 SV=1
Length = 704
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89
VK KKDPN PKRP SA+F++L E R +K E+ + +
Sbjct: 544 VKRKKKDPNAPKRPQSAYFLWLNENRGRFKAENKGISVTELTKL 587
>sp|Q04678|SSRP1_CHICK FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2
Length = 706
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 42 RTKNVKSAK-KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
R K V+S K KDPN PKRP SA+ ++L R+ K +HP +
Sbjct: 530 RKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGI 570
>sp|P30681|HMGB2_MOUSE High mobility group protein B2 OS=Mus musculus GN=Hmgb2 PE=1 SV=3
Length = 210
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
N PKRPPSAFF+F E R K EHP +
Sbjct: 93 NAPKRPPSAFFLFCSENRPKIKIEHPGL 120
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
K DPNKP+ S++ F++ R+ +K++HP+
Sbjct: 2 GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPD 33
>sp|P0CO24|NHP6_CRYNJ Non-histone chromosomal protein 6 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=NHP6 PE=3 SV=1
Length = 116
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
K KKDPNKPKR SA+ F++++R+ K E+P
Sbjct: 19 KRTKKDPNKPKRALSAYMFFVQDYRERIKTENP 51
>sp|P0CO25|NHP6_CRYNB Non-histone chromosomal protein 6 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=NHP6 PE=3
SV=1
Length = 116
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
K KKDPNKPKR SA+ F++++R+ K E+P
Sbjct: 19 KRTKKDPNKPKRALSAYMFFVQDYRERIKTENP 51
>sp|Q08943|SSRP1_MOUSE FACT complex subunit SSRP1 OS=Mus musculus GN=Ssrp1 PE=1 SV=2
Length = 708
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 23 DRAAGKRKAVLKASRSSNKRTKNVKSA---KKDPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
DR KR+ + +A + +++++ S KDPN PKRP SA+ ++L R+ K +HP
Sbjct: 511 DREEKKREQLKRAKMAKDRKSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP 570
Query: 80 NV 81
+
Sbjct: 571 GI 572
>sp|Q4WY33|NHP6_ASPFU Non-histone chromosomal protein 6 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=nhp6 PE=3 SV=1
Length = 104
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 38 SSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
S+ +TK V+ KKDPN PKR SA+ F E R ++E+P +
Sbjct: 7 STRTKTKRVERKKKDPNAPKRGLSAYMFFANENRDKVREENPGI 50
>sp|Q04931|SSRP1_RAT FACT complex subunit SSRP1 OS=Rattus norvegicus GN=Ssrp1 PE=1 SV=2
Length = 709
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 23 DRAAGKRKAVLKASRSSNKRTKNVKSAKK---DPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
DR KRK + +A + +++++ S K DPN PKRP SA+ ++L R+ K +HP
Sbjct: 511 DREEKKRKQLKRAKMAKDRKSRKKSSEGKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP 570
Query: 80 NV 81
+
Sbjct: 571 GI 572
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.126 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,486,578
Number of Sequences: 539616
Number of extensions: 920376
Number of successful extensions: 4550
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 4256
Number of HSP's gapped (non-prelim): 348
length of query: 91
length of database: 191,569,459
effective HSP length: 61
effective length of query: 30
effective length of database: 158,652,883
effective search space: 4759586490
effective search space used: 4759586490
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)