Query 034563
Match_columns 91
No_of_seqs 123 out of 649
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 04:09:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034563.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034563hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00199 high mobility group p 99.6 2.7E-15 5.9E-20 99.5 3.5 47 44-90 11-58 (94)
2 COG5648 NHP6B Chromatin-associ 99.2 4.3E-12 9.4E-17 96.5 1.4 46 44-90 59-104 (211)
3 cd01389 MATA_HMG-box MATA_HMG- 99.1 4.1E-11 8.9E-16 75.8 2.2 34 56-90 2-35 (77)
4 cd01390 HMGB-UBF_HMG-box HMGB- 99.1 7.1E-11 1.5E-15 71.0 2.2 34 56-90 1-34 (66)
5 KOG0381 HMG box-containing pro 99.1 9.5E-11 2.1E-15 75.8 2.8 38 52-90 17-56 (96)
6 cd01388 SOX-TCF_HMG-box SOX-TC 99.0 1.3E-10 2.7E-15 72.8 2.2 34 56-90 2-35 (72)
7 PF00505 HMG_box: HMG (high mo 99.0 1.3E-10 2.7E-15 70.6 2.0 34 56-90 1-34 (69)
8 smart00398 HMG high mobility g 99.0 2.7E-10 5.9E-15 68.5 2.3 35 55-90 1-35 (70)
9 cd00084 HMG-box High Mobility 98.9 5.7E-10 1.2E-14 66.4 2.2 33 56-89 1-33 (66)
10 KOG0526 Nucleosome-binding fac 98.8 3.3E-09 7.2E-14 90.0 2.4 43 45-90 525-567 (615)
11 PF09011 HMG_box_2: HMG-box do 98.6 1.8E-08 3.8E-13 63.2 2.0 36 53-89 1-37 (73)
12 KOG0527 HMG-box transcription 97.9 3.6E-06 7.9E-11 67.5 1.2 38 52-90 59-96 (331)
13 KOG0528 HMG-box transcription 95.6 0.0049 1.1E-07 52.3 1.0 39 51-90 321-359 (511)
14 KOG3248 Transcription factor T 95.1 0.014 3E-07 48.3 2.2 24 56-79 192-215 (421)
15 PF04690 YABBY: YABBY protein; 95.1 0.028 6E-07 41.8 3.5 33 50-82 116-148 (170)
16 KOG4715 SWI/SNF-related matrix 94.5 0.019 4.2E-07 47.2 1.5 42 48-90 57-98 (410)
17 PF06244 DUF1014: Protein of u 88.1 0.3 6.5E-06 34.6 1.5 36 50-86 67-102 (122)
18 KOG2746 HMG-box transcription 87.7 0.15 3.2E-06 45.0 -0.3 35 55-90 181-217 (683)
19 PF08073 CHDNT: CHDNT (NUC034) 85.6 0.61 1.3E-05 29.1 1.8 27 60-87 13-39 (55)
20 PF04769 MAT_Alpha1: Mating-ty 48.8 13 0.00028 28.1 1.9 21 51-71 39-59 (201)
21 PF06382 DUF1074: Protein of u 47.6 12 0.00026 28.4 1.6 23 60-87 83-105 (183)
22 PF05047 L51_S25_CI-B8: Mitoch 42.3 22 0.00048 20.4 1.8 17 66-82 4-20 (52)
23 KOG3223 Uncharacterized conser 28.2 14 0.00031 28.6 -0.7 34 52-86 161-194 (221)
24 cd08332 CARD_CASP2 Caspase act 23.6 44 0.00095 21.8 1.0 18 55-72 60-77 (90)
25 PF08946 Osmo_CC: Osmosensory 22.3 73 0.0016 19.3 1.7 18 64-81 28-45 (46)
26 cd08326 CARD_CASP9 Caspase act 20.4 58 0.0013 21.1 1.1 18 55-72 56-73 (84)
No 1
>PTZ00199 high mobility group protein; Provisional
Probab=99.55 E-value=2.7e-15 Score=99.50 Aligned_cols=47 Identities=40% Similarity=0.571 Sum_probs=41.2
Q ss_pred cccccCCCCCCCCCCCCchHHhHHHHHHHHHHHhCCCCC-cccccccC
Q 034563 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK-AVSAVSIY 90 (91)
Q Consensus 44 kk~kKk~KDpn~PKRP~SAY~lF~~e~R~~iK~enP~ls-~v~eIsK~ 90 (91)
++++++.+|||+||||+||||+||+++|..|..+||+++ +|+||+++
T Consensus 11 k~~~k~~kdp~~PKrP~sAY~~F~~~~R~~i~~~~P~~~~~~~evsk~ 58 (94)
T PTZ00199 11 RKNKRKKKDPNAPKRALSAYMFFAKEKRAEIIAENPELAKDVAAVGKM 58 (94)
T ss_pred cccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCcCCcccHHHHHHH
Confidence 445567899999999999999999999999999999985 47888764
No 2
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=99.20 E-value=4.3e-12 Score=96.49 Aligned_cols=46 Identities=39% Similarity=0.662 Sum_probs=41.9
Q ss_pred cccccCCCCCCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 44 kk~kKk~KDpn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
+...++.+|||+||||+||||+||+++|.+|..+||.++ |+|||++
T Consensus 59 k~~~r~k~dpN~PKRp~sayf~y~~~~R~ei~~~~p~l~-~~e~~k~ 104 (211)
T COG5648 59 KRLVRKKKDPNGPKRPLSAYFLYSAENRDEIRKENPKLT-FGEVGKL 104 (211)
T ss_pred HHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHhCCCCC-hHHHHHH
Confidence 345667799999999999999999999999999999998 9999874
No 3
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=99.10 E-value=4.1e-11 Score=75.76 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=32.3
Q ss_pred CCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 56 PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
||||+|||||||+++|..|+.+||+++ ++||+++
T Consensus 2 ~kRP~naf~lf~~~~r~~~~~~~p~~~-~~eisk~ 35 (77)
T cd01389 2 IPRPRNAFILYRQDKHAQLKTENPGLT-NNEISRI 35 (77)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCCCCC-HHHHHHH
Confidence 799999999999999999999999998 9999874
No 4
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=99.06 E-value=7.1e-11 Score=71.02 Aligned_cols=34 Identities=44% Similarity=0.743 Sum_probs=31.8
Q ss_pred CCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 56 PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
||||+|+||+||+++|..++.+||+++ +.+|+++
T Consensus 1 Pkrp~saf~~f~~~~r~~~~~~~p~~~-~~~i~~~ 34 (66)
T cd01390 1 PKRPLSAYFLFSQEQRPKLKKENPDAS-VTEVTKI 34 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCCC-HHHHHHH
Confidence 899999999999999999999999998 9988763
No 5
>KOG0381 consensus HMG box-containing protein [General function prediction only]
Probab=99.06 E-value=9.5e-11 Score=75.85 Aligned_cols=38 Identities=47% Similarity=0.737 Sum_probs=35.6
Q ss_pred CC--CCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 52 DP--NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 52 Dp--n~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
|| ++||||+||||+||+++|..|+.+||+++ |.||+++
T Consensus 17 ~p~~~~pkrp~sa~~~f~~~~~~~~k~~~p~~~-~~~v~k~ 56 (96)
T KOG0381|consen 17 DPNAQAPKRPLSAFFLFSSEQRSKIKAENPGLS-VGEVAKA 56 (96)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCC-HHHHHHH
Confidence 77 49999999999999999999999999998 9999875
No 6
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=99.02 E-value=1.3e-10 Score=72.84 Aligned_cols=34 Identities=35% Similarity=0.430 Sum_probs=31.6
Q ss_pred CCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 56 PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
-|||+||||+||+++|..++.+||+++ ++||+++
T Consensus 2 iKrP~naf~~F~~~~r~~~~~~~p~~~-~~eisk~ 35 (72)
T cd01388 2 IKRPMNAFMLFSKRHRRKVLQEYPLKE-NRAISKI 35 (72)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCCCCC-HHHHHHH
Confidence 379999999999999999999999998 9999874
No 7
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=99.02 E-value=1.3e-10 Score=70.63 Aligned_cols=34 Identities=41% Similarity=0.743 Sum_probs=30.0
Q ss_pred CCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 56 PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
|+||+|+|++||+++|..|+.+||+++ +++|+++
T Consensus 1 PkrP~~af~lf~~~~~~~~k~~~p~~~-~~~i~~~ 34 (69)
T PF00505_consen 1 PKRPPNAFMLFCKEKRAKLKEENPDLS-NKEISKI 34 (69)
T ss_dssp SSSS--HHHHHHHHHHHHHHHHSTTST-HHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHHHHHhcccc-cccchhh
Confidence 899999999999999999999999998 9998763
No 8
>smart00398 HMG high mobility group.
Probab=98.98 E-value=2.7e-10 Score=68.47 Aligned_cols=35 Identities=43% Similarity=0.642 Sum_probs=32.3
Q ss_pred CCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 55 ~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
+|+||+|+||+||+++|..+..+||+++ +++|+++
T Consensus 1 ~pkrp~~~y~~f~~~~r~~~~~~~~~~~-~~~i~~~ 35 (70)
T smart00398 1 KPKRPMSAFMLFSQENRAKIKAENPDLS-NAEISKK 35 (70)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHHCcCCC-HHHHHHH
Confidence 5899999999999999999999999998 9888753
No 9
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=98.92 E-value=5.7e-10 Score=66.35 Aligned_cols=33 Identities=45% Similarity=0.761 Sum_probs=30.9
Q ss_pred CCCCCchHHhHHHHHHHHHHHhCCCCCccccccc
Q 034563 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89 (91)
Q Consensus 56 PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK 89 (91)
|+||+|+||+||+++|..++.+||+++ +.+|++
T Consensus 1 pkrp~~af~~f~~~~~~~~~~~~~~~~-~~~i~~ 33 (66)
T cd00084 1 PKRPLSAYFLFSQEHRAEVKAENPGLS-VGEISK 33 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCCC-HHHHHH
Confidence 899999999999999999999999998 888865
No 10
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=98.76 E-value=3.3e-09 Score=89.95 Aligned_cols=43 Identities=35% Similarity=0.572 Sum_probs=39.2
Q ss_pred ccccCCCCCCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 45 NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 45 k~kKk~KDpn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
++.|+.+|||+|||++||||+|++..|..|+++ +++ |+||+|.
T Consensus 525 k~~kk~kdpnapkra~sa~m~w~~~~r~~ik~d--gi~-~~dv~kk 567 (615)
T KOG0526|consen 525 KKGKKKKDPNAPKRATSAYMLWLNASRESIKED--GIS-VGDVAKK 567 (615)
T ss_pred cCcccCCCCCCCccchhHHHHHHHhhhhhHhhc--Cch-HHHHHHH
Confidence 456678999999999999999999999999998 998 9999873
No 11
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=98.62 E-value=1.8e-08 Score=63.21 Aligned_cols=36 Identities=44% Similarity=0.721 Sum_probs=28.2
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHh-CCCCCccccccc
Q 034563 53 PNKPKRPPSAFFVFLEEFRKVYKQE-HPNVKAVSAVSI 89 (91)
Q Consensus 53 pn~PKRP~SAY~lF~~e~R~~iK~e-nP~ls~v~eIsK 89 (91)
|+.||+|+|||+|||.+++..++.+ ++.+. +.||++
T Consensus 1 p~kpK~~~say~lF~~~~~~~~k~~G~~~~~-~~e~~k 37 (73)
T PF09011_consen 1 PKKPKRPPSAYNLFMKEMRKEVKEEGGQKQS-FREVMK 37 (73)
T ss_dssp SSS--SSSSHHHHHHHHHHHHHHHHT-T-SS-HHHHHH
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHhcccCCC-HHHHHH
Confidence 7899999999999999999999999 77666 777654
No 12
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=97.91 E-value=3.6e-06 Score=67.52 Aligned_cols=38 Identities=26% Similarity=0.464 Sum_probs=34.4
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 52 Dpn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
...-=|||++|||+|.+..|.+|..+||.|. .+||||+
T Consensus 59 ~~~hIKRPMNAFMVWSq~~RRkma~qnP~mH-NSEISK~ 96 (331)
T KOG0527|consen 59 STDRIKRPMNAFMVWSQGQRRKLAKQNPKMH-NSEISKR 96 (331)
T ss_pred CccccCCCcchhhhhhHHHHHHHHHhCcchh-hHHHHHH
Confidence 3445689999999999999999999999999 9999985
No 13
>KOG0528 consensus HMG-box transcription factor SOX5 [Transcription]
Probab=95.57 E-value=0.0049 Score=52.34 Aligned_cols=39 Identities=28% Similarity=0.409 Sum_probs=33.8
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 51 KDpn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
..++-=|||++|||+|.++-|..|-..+|++. ...|+||
T Consensus 321 ss~PHIKRPMNAFMVWAkDERRKILqA~PDMH-NSnISKI 359 (511)
T KOG0528|consen 321 SSEPHIKRPMNAFMVWAKDERRKILQAFPDMH-NSNISKI 359 (511)
T ss_pred CCCccccCCcchhhcccchhhhhhhhcCcccc-ccchhHH
Confidence 33344599999999999999999999999999 8888886
No 14
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=95.12 E-value=0.014 Score=48.31 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.2
Q ss_pred CCCCCchHHhHHHHHHHHHHHhCC
Q 034563 56 PKRPPSAFFVFLEEFRKVYKQEHP 79 (91)
Q Consensus 56 PKRP~SAY~lF~~e~R~~iK~enP 79 (91)
=|+|++||||||+|+|..+.+|--
T Consensus 192 iKKPLNAFmlyMKEmRa~vvaEct 215 (421)
T KOG3248|consen 192 IKKPLNAFMLYMKEMRAKVVAECT 215 (421)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhh
Confidence 478999999999999999988753
No 15
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=95.08 E-value=0.028 Score=41.85 Aligned_cols=33 Identities=36% Similarity=0.592 Sum_probs=28.5
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHhCCCCC
Q 034563 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK 82 (91)
Q Consensus 50 ~KDpn~PKRP~SAY~lF~~e~R~~iK~enP~ls 82 (91)
.+-|..-.|-+|||-.|++|....|+++||+|+
T Consensus 116 ~kPPEKRqR~psaYn~f~k~ei~rik~~~p~is 148 (170)
T PF04690_consen 116 NKPPEKRQRVPSAYNRFMKEEIQRIKAENPDIS 148 (170)
T ss_pred cCCccccCCCchhHHHHHHHHHHHHHhcCCCCC
Confidence 344555668899999999999999999999997
No 16
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=94.47 E-value=0.019 Score=47.21 Aligned_cols=42 Identities=17% Similarity=0.391 Sum_probs=38.7
Q ss_pred cCCCCCCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 48 SAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 48 Kk~KDpn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
...+.|.+|-+|+-.||.|+...-.+++..||++. +=||||+
T Consensus 57 t~pkpPkppekpl~pymrySrkvWd~VkA~nPe~k-LWeiGK~ 98 (410)
T KOG4715|consen 57 TRPKPPKPPEKPLMPYMRYSRKVWDQVKASNPELK-LWEIGKI 98 (410)
T ss_pred cCCCCCCCCCcccchhhHHhhhhhhhhhccCcchH-HHHHHHH
Confidence 45678899999999999999999999999999999 9999886
No 17
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=88.13 E-value=0.3 Score=34.59 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=30.9
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccc
Q 034563 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSA 86 (91)
Q Consensus 50 ~KDpn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~e 86 (91)
.-|-.+-+|-..||--|+..+-+.|+++||||. .++
T Consensus 67 ~~drHPErR~KAAy~afeE~~Lp~lK~E~PgLr-lsQ 102 (122)
T PF06244_consen 67 PIDRHPERRMKAAYKAFEERRLPELKEENPGLR-LSQ 102 (122)
T ss_pred CCCCCcchhHHHHHHHHHHHHhHHHHhhCCCch-HHH
Confidence 456677788889999999999999999999997 544
No 18
>KOG2746 consensus HMG-box transcription factor Capicua and related proteins [Transcription]
Probab=87.73 E-value=0.15 Score=44.96 Aligned_cols=35 Identities=31% Similarity=0.492 Sum_probs=30.9
Q ss_pred CCCCCCchHHhHHHHHH--HHHHHhCCCCCcccccccC
Q 034563 55 KPKRPPSAFFVFLEEFR--KVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 55 ~PKRP~SAY~lF~~e~R--~~iK~enP~ls~v~eIsK~ 90 (91)
--.||+++|++||+-+| ..+...||+.. ..-|++|
T Consensus 181 HirrPMnaf~ifskrhr~~g~vhq~~pn~D-NrtIski 217 (683)
T KOG2746|consen 181 HIRRPMNAFHIFSKRHRGEGRVHQRHPNQD-NRTISKI 217 (683)
T ss_pred hhhhhhHHHHHHHhhcCCccchhccCcccc-chhHHHH
Confidence 45799999999999999 99999999987 7777765
No 19
>PF08073 CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 The CHD N-terminal domain is found in PHD/RING fingers and chromo domain-associated helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.64 E-value=0.61 Score=29.10 Aligned_cols=27 Identities=15% Similarity=0.362 Sum_probs=23.0
Q ss_pred CchHHhHHHHHHHHHHHhCCCCCccccc
Q 034563 60 PSAFFVFLEEFRKVYKQEHPNVKAVSAV 87 (91)
Q Consensus 60 ~SAY~lF~~e~R~~iK~enP~ls~v~eI 87 (91)
++.|=+|.+..|+.|.+.||++. ++.|
T Consensus 13 lt~yK~Fsq~vRP~l~~~NPk~~-~sKl 39 (55)
T PF08073_consen 13 LTNYKAFSQHVRPLLAKANPKAP-MSKL 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCc-HHHH
Confidence 46788999999999999999998 5443
No 20
>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT). MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus
Probab=48.76 E-value=13 Score=28.15 Aligned_cols=21 Identities=33% Similarity=0.725 Sum_probs=17.0
Q ss_pred CCCCCCCCCCchHHhHHHHHH
Q 034563 51 KDPNKPKRPPSAFFVFLEEFR 71 (91)
Q Consensus 51 KDpn~PKRP~SAY~lF~~e~R 71 (91)
..+..++||+++||.|..-+-
T Consensus 39 ~~~~~~kr~lN~Fm~FRsyy~ 59 (201)
T PF04769_consen 39 RSPEKAKRPLNGFMAFRSYYS 59 (201)
T ss_pred ccccccccchhHHHHHHHHHH
Confidence 445578999999999987666
No 21
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=47.62 E-value=12 Score=28.40 Aligned_cols=23 Identities=30% Similarity=0.623 Sum_probs=18.0
Q ss_pred CchHHhHHHHHHHHHHHhCCCCCccccc
Q 034563 60 PSAFFVFLEEFRKVYKQEHPNVKAVSAV 87 (91)
Q Consensus 60 ~SAY~lF~~e~R~~iK~enP~ls~v~eI 87 (91)
-++||-|+.+||. .|.+|+ ..|+
T Consensus 83 nnaYLNFLReFRr----kh~~L~-p~dl 105 (183)
T PF06382_consen 83 NNAYLNFLREFRR----KHCGLS-PQDL 105 (183)
T ss_pred chHHHHHHHHHHH----HccCCC-HHHH
Confidence 3699999999998 567787 5554
No 22
>PF05047 L51_S25_CI-B8: Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain ; InterPro: IPR007741 Proteins containing this domain are located in the mitochondrion and include ribosomal protein L51, and S25. This domain is also found in mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) 1.6.5.3 from EC. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins.; PDB: 1S3A_A.
Probab=42.29 E-value=22 Score=20.40 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhCCCCC
Q 034563 66 FLEEFRKVYKQEHPNVK 82 (91)
Q Consensus 66 F~~e~R~~iK~enP~ls 82 (91)
|..++-+.|+..||++.
T Consensus 4 F~~~~lp~l~~~NP~v~ 20 (52)
T PF05047_consen 4 FLKNNLPTLKYHNPQVQ 20 (52)
T ss_dssp HHHHTHHHHHHHSTT--
T ss_pred HHHHhHHHHHHHCCCcE
Confidence 77899999999999986
No 23
>KOG3223 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.24 E-value=14 Score=28.65 Aligned_cols=34 Identities=32% Similarity=0.407 Sum_probs=28.3
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccc
Q 034563 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSA 86 (91)
Q Consensus 52 Dpn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~e 86 (91)
|-.+-+|-..||.-|-...-+.|+.+||+|. .++
T Consensus 161 drHPEkRmrAA~~afEe~~LPrLK~e~P~lr-lsQ 194 (221)
T KOG3223|consen 161 DRHPEKRMRAAFKAFEEARLPRLKKENPGLR-LSQ 194 (221)
T ss_pred ccChHHHHHHHHHHHHHhhchhhhhcCCCcc-HHH
Confidence 3455577789999999999999999999997 543
No 24
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=23.60 E-value=44 Score=21.81 Aligned_cols=18 Identities=50% Similarity=0.794 Sum_probs=15.5
Q ss_pred CCCCCCchHHhHHHHHHH
Q 034563 55 KPKRPPSAFFVFLEEFRK 72 (91)
Q Consensus 55 ~PKRP~SAY~lF~~e~R~ 72 (91)
-|.|-+.||-.||+.-+.
T Consensus 60 L~~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 60 LPKRGPRAFSAFCEALRE 77 (90)
T ss_pred HHHhChhHHHHHHHHHHh
Confidence 378889999999998875
No 25
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=22.31 E-value=73 Score=19.29 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=11.3
Q ss_pred HhHHHHHHHHHHHhCCCC
Q 034563 64 FVFLEEFRKVYKQEHPNV 81 (91)
Q Consensus 64 ~lF~~e~R~~iK~enP~l 81 (91)
+--+++.|..+..+||.+
T Consensus 28 IaeLe~KR~~Lv~qHP~i 45 (46)
T PF08946_consen 28 IAELEAKRQRLVDQHPRI 45 (46)
T ss_dssp HHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 345678899999999986
No 26
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=20.41 E-value=58 Score=21.15 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=15.6
Q ss_pred CCCCCCchHHhHHHHHHH
Q 034563 55 KPKRPPSAFFVFLEEFRK 72 (91)
Q Consensus 55 ~PKRP~SAY~lF~~e~R~ 72 (91)
-|.|-..||-.||+.-+.
T Consensus 56 L~~RG~~AF~~F~~aL~~ 73 (84)
T cd08326 56 LETRGKQAFPAFLSALRE 73 (84)
T ss_pred HHhcCHHHHHHHHHHHHh
Confidence 377889999999998876
Done!