Query 034563
Match_columns 91
No_of_seqs 123 out of 649
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 06:18:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034563.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034563hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wgf_A Upstream binding factor 99.6 5.2E-16 1.8E-20 100.2 3.7 45 45-90 10-54 (90)
2 1k99_A Upstream binding factor 99.5 1.8E-15 6.2E-20 99.6 3.1 43 47-90 2-44 (99)
3 2co9_A Thymus high mobility gr 99.5 2.1E-15 7.2E-20 99.4 3.4 45 45-90 7-51 (102)
4 2eqz_A High mobility group pro 99.5 9.5E-15 3.3E-19 93.2 3.7 45 46-90 6-51 (86)
5 1cg7_A Protein (NON histone pr 99.5 3.9E-15 1.3E-19 96.5 1.6 44 46-90 11-54 (93)
6 1hme_A High mobility group pro 99.5 8.5E-15 2.9E-19 91.1 2.7 40 50-90 1-40 (77)
7 2e6o_A HMG box-containing prot 99.5 1.2E-14 4.1E-19 93.1 3.2 42 48-90 10-51 (87)
8 2d7l_A WD repeat and HMG-box D 99.5 1E-14 3.4E-19 93.9 2.9 39 52-90 2-40 (81)
9 1hry_A Human SRY; DNA, DNA-bin 99.5 2E-14 7E-19 89.1 3.0 38 52-90 1-38 (76)
10 1aab_A High mobility group pro 99.5 2.1E-14 7.3E-19 90.7 3.1 41 50-90 2-43 (83)
11 2crj_A SWI/SNF-related matrix- 99.5 2.4E-14 8.3E-19 92.5 2.9 40 50-90 2-41 (92)
12 1wxl_A Single-strand recogniti 99.4 2.7E-14 9.2E-19 88.5 2.6 37 53-90 1-37 (73)
13 2lhj_A High mobility group pro 99.4 1.8E-14 6.3E-19 93.8 1.8 46 45-90 12-58 (97)
14 2yuk_A Myeloid/lymphoid or mix 99.4 8.5E-16 2.9E-20 101.8 -5.1 42 47-88 14-56 (90)
15 3nm9_A HMG-D, high mobility gr 99.4 3.8E-14 1.3E-18 87.8 2.5 37 53-90 1-37 (73)
16 2gzk_A Sex-determining region 99.4 7.8E-14 2.7E-18 96.6 3.4 44 46-90 79-122 (159)
17 2cs1_A PMS1 protein homolog 1; 99.4 1.1E-13 3.9E-18 89.3 2.6 39 51-90 3-41 (92)
18 1j46_A SRY, sex-determining re 99.4 1.3E-13 4.5E-18 87.7 2.7 38 52-90 1-38 (85)
19 1wz6_A HMG-box transcription f 99.4 2E-13 7E-18 86.0 3.1 39 51-90 3-41 (82)
20 2yrq_A High mobility group pro 99.3 5.7E-13 1.9E-17 93.7 3.2 43 47-90 93-135 (173)
21 4euw_A Transcription factor SO 99.3 6E-13 2E-17 88.4 2.5 41 49-90 23-63 (106)
22 1i11_A Transcription factor SO 99.3 7.5E-13 2.6E-17 83.2 2.1 38 52-90 1-38 (81)
23 2yrq_A High mobility group pro 99.3 1.5E-12 5.1E-17 91.5 3.5 43 47-90 7-51 (173)
24 3f27_D Transcription factor SO 99.3 9.8E-13 3.3E-17 82.7 2.1 38 52-90 3-40 (83)
25 1ckt_A High mobility group 1 p 99.2 2.8E-12 9.5E-17 78.3 2.6 36 55-90 1-37 (71)
26 1gt0_D Transcription factor SO 99.2 2.7E-12 9.1E-17 80.3 2.1 36 54-90 1-36 (80)
27 4a3n_A Transcription factor SO 99.2 2.3E-12 7.8E-17 78.4 1.6 36 54-90 1-36 (71)
28 2cto_A Novel protein; high mob 99.2 4.9E-12 1.7E-16 83.7 2.6 39 49-90 4-42 (93)
29 3u2b_C Transcription factor SO 99.2 5.3E-12 1.8E-16 78.5 2.1 36 54-90 1-36 (79)
30 2lef_A LEF-1 HMG, protein (lym 99.2 6.2E-12 2.1E-16 79.9 2.1 35 55-90 2-36 (86)
31 1v64_A Nucleolar transcription 99.1 1E-11 3.6E-16 83.0 1.5 40 46-90 7-47 (108)
32 3tmm_A Transcription factor A, 99.1 2.1E-11 7.1E-16 90.6 0.5 40 50-90 36-75 (238)
33 3tq6_A Transcription factor A, 99.0 4E-11 1.4E-15 87.9 1.1 38 52-90 6-43 (214)
34 1l8y_A Upstream binding factor 99.0 1.6E-10 5.6E-15 76.7 2.1 35 54-90 3-37 (91)
35 3fgh_A Transcription factor A, 98.9 2.5E-10 8.6E-15 69.3 0.2 27 54-80 1-27 (67)
36 2gzk_A Sex-determining region 98.8 1.1E-09 3.6E-14 75.7 2.7 38 52-90 1-38 (159)
37 3tq6_A Transcription factor A, 98.8 4.4E-11 1.5E-15 87.6 -5.8 34 47-80 106-139 (214)
38 1v63_A Nucleolar transcription 98.7 4.2E-09 1.4E-13 69.4 1.8 37 51-90 4-40 (101)
39 3tmm_A Transcription factor A, 98.7 2.6E-10 8.8E-15 84.7 -4.8 34 47-80 138-171 (238)
40 2rh0_A NUDC domain-containing 26.5 39 0.0013 22.9 2.4 15 71-86 121-135 (157)
41 2rhf_A DNA helicase RECQ; HRDC 24.6 41 0.0014 19.9 1.9 28 60-89 24-51 (77)
42 1s3a_A NADH-ubiquinone oxidore 22.1 51 0.0017 20.8 2.1 17 66-82 39-55 (102)
43 2kv2_A Bloom syndrome protein; 21.5 44 0.0015 20.2 1.7 21 60-80 26-46 (85)
No 1
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.59 E-value=5.2e-16 Score=100.17 Aligned_cols=45 Identities=36% Similarity=0.589 Sum_probs=41.1
Q ss_pred ccccCCCCCCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 45 NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 45 k~kKk~KDpn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
+.+++.+|||+||||+|||||||+++|..|+.+||+++ ++||+++
T Consensus 10 k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~-~~eisk~ 54 (90)
T 1wgf_A 10 SQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELS-ESELTRL 54 (90)
T ss_dssp CSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSC-HHHHHHH
T ss_pred CcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHH
Confidence 35566799999999999999999999999999999998 9999874
No 2
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.55 E-value=1.8e-15 Score=99.58 Aligned_cols=43 Identities=33% Similarity=0.576 Sum_probs=39.8
Q ss_pred ccCCCCCCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 47 kKk~KDpn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
+++.+||++||||+|||||||+++|.+|+.+||+++ ++||+++
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~-~~eisk~ 44 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMS-NLDLTKI 44 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSC-SHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHH
Confidence 346689999999999999999999999999999998 9999874
No 3
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.54 E-value=2.1e-15 Score=99.42 Aligned_cols=45 Identities=36% Similarity=0.612 Sum_probs=40.9
Q ss_pred ccccCCCCCCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 45 NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 45 k~kKk~KDpn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
+++++.+|||+||||+|||||||+++|..|+.+||+++ ++||+++
T Consensus 7 ~~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~-~~eisk~ 51 (102)
T 2co9_A 7 GKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNAT-FGEVSKI 51 (102)
T ss_dssp CSCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSC-HHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHH
Confidence 34566799999999999999999999999999999998 9999864
No 4
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=9.5e-15 Score=93.21 Aligned_cols=45 Identities=33% Similarity=0.448 Sum_probs=39.5
Q ss_pred cccCCCCCCCCCCCCchHHhHHHHHHHHHHHhCCCCC-cccccccC
Q 034563 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK-AVSAVSIY 90 (91)
Q Consensus 46 ~kKk~KDpn~PKRP~SAY~lF~~e~R~~iK~enP~ls-~v~eIsK~ 90 (91)
+++..+||++||||+|||||||+++|.+|+.+||+++ +|+||+++
T Consensus 6 ~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~ 51 (86)
T 2eqz_A 6 SGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKK 51 (86)
T ss_dssp SSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHH
Confidence 3445689999999999999999999999999999997 25999864
No 5
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.50 E-value=3.9e-15 Score=96.54 Aligned_cols=44 Identities=36% Similarity=0.618 Sum_probs=40.7
Q ss_pred cccCCCCCCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 46 ~kKk~KDpn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
+++..+||+.|+||+|||||||+++|..|+.+||+++ ++||+++
T Consensus 11 ~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~-~~eisk~ 54 (93)
T 1cg7_A 11 TTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDIT-FGQVGKK 54 (93)
T ss_dssp CCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSC-HHHHTTT
T ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHH
Confidence 4556789999999999999999999999999999998 9999975
No 6
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.49 E-value=8.5e-15 Score=91.07 Aligned_cols=40 Identities=53% Similarity=0.899 Sum_probs=37.6
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 50 ~KDpn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
.+|||+||||+|||||||+++|..|+.+||+++ ++||+++
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~-~~eisk~ 40 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKK 40 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCC-HHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHH
Confidence 379999999999999999999999999999998 9999864
No 7
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.48 E-value=1.2e-14 Score=93.08 Aligned_cols=42 Identities=36% Similarity=0.587 Sum_probs=39.3
Q ss_pred cCCCCCCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 48 SAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 48 Kk~KDpn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
+..+||+.||||+|||||||+++|..|+.+||+++ ++||+++
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~-~~eisk~ 51 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKD-NRAISVI 51 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSC-HHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHH
Confidence 46789999999999999999999999999999998 9999874
No 8
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1e-14 Score=93.88 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=36.3
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 52 Dpn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
++|+||||+|||||||+++|++|+.+||++++|+||+++
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~ 40 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKE 40 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 689999999999999999999999999999559999874
No 9
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.46 E-value=2e-14 Score=89.13 Aligned_cols=38 Identities=29% Similarity=0.455 Sum_probs=34.6
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 52 Dpn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
|||.||||+|||||||+++|..|+.+||+++ ++||+++
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~~-~~eisk~ 38 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NSEISKQ 38 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCCS-SSHHHHH
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCCC-HHHHHHH
Confidence 7999999999999999999999999999998 9999874
No 10
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.46 E-value=2.1e-14 Score=90.69 Aligned_cols=41 Identities=32% Similarity=0.507 Sum_probs=37.4
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHhCCCCC-cccccccC
Q 034563 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK-AVSAVSIY 90 (91)
Q Consensus 50 ~KDpn~PKRP~SAY~lF~~e~R~~iK~enP~ls-~v~eIsK~ 90 (91)
.+|||+||||+|||||||+++|.+|+.+||+++ +|+||+++
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~ 43 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKK 43 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHH
Confidence 379999999999999999999999999999997 36999874
No 11
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.45 E-value=2.4e-14 Score=92.46 Aligned_cols=40 Identities=23% Similarity=0.506 Sum_probs=37.7
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 50 ~KDpn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
.+|||+||||+|||||||+++|..|+.+||+++ ++||+++
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~-~~eisk~ 41 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDLP-FPEITKM 41 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCC-HHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHH
Confidence 479999999999999999999999999999998 9999874
No 12
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.45 E-value=2.7e-14 Score=88.53 Aligned_cols=37 Identities=32% Similarity=0.652 Sum_probs=35.3
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 53 pn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
||+||||+||||+||+++|..|+.+||+++ ++||+++
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~-~~eisk~ 37 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIK-VTEIAKK 37 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCC-HHHHHHH
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHH
Confidence 799999999999999999999999999998 9999874
No 13
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.44 E-value=1.8e-14 Score=93.81 Aligned_cols=46 Identities=37% Similarity=0.570 Sum_probs=40.2
Q ss_pred ccccCCCCCCCCCCCCchHHhHHHHHHHHHHHhCCCCC-cccccccC
Q 034563 45 NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK-AVSAVSIY 90 (91)
Q Consensus 45 k~kKk~KDpn~PKRP~SAY~lF~~e~R~~iK~enP~ls-~v~eIsK~ 90 (91)
+++++.+||++||||+|||||||+++|..|+.+||+++ +++||+++
T Consensus 12 ~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~ 58 (97)
T 2lhj_A 12 RPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKM 58 (97)
T ss_dssp CTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHH
T ss_pred ccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHH
Confidence 34566799999999999999999999999999999984 38888764
No 14
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.43 E-value=8.5e-16 Score=101.78 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=37.0
Q ss_pred ccCCCCCCCCCCCCchHHhHHHHHHHHHHHhCCCCC-cccccc
Q 034563 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK-AVSAVS 88 (91)
Q Consensus 47 kKk~KDpn~PKRP~SAY~lF~~e~R~~iK~enP~ls-~v~eIs 88 (91)
.+..+|||+||||+|||||||+++|++|+.+||+++ .|+||+
T Consensus 14 ~k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs 56 (90)
T 2yuk_A 14 LKWEKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA 56 (90)
T ss_dssp HHHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH
T ss_pred hhccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH
Confidence 344579999999999999999999999999999983 288886
No 15
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.43 E-value=3.8e-14 Score=87.82 Aligned_cols=37 Identities=41% Similarity=0.682 Sum_probs=34.7
Q ss_pred CCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 53 pn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
.|+||||+|||||||+++|+.|+.+||+++ ++||+++
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~~-~~eisk~ 37 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGIK-VTEVAKR 37 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSCC-HHHHHHH
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHH
Confidence 479999999999999999999999999998 9999874
No 16
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.41 E-value=7.8e-14 Score=96.61 Aligned_cols=44 Identities=50% Similarity=0.840 Sum_probs=40.1
Q ss_pred cccCCCCCCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 46 ~kKk~KDpn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
++++.+||++||||+|||||||+++|..|+.+||+++ ++||+++
T Consensus 79 ~kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~-~~ei~k~ 122 (159)
T 2gzk_A 79 TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKK 122 (159)
T ss_dssp CGGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCC-HHHHHHH
T ss_pred ccccccccccccccccccchhhHhhHHHHHHhCCCCC-HHHHHHH
Confidence 3456789999999999999999999999999999998 9999864
No 17
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.1e-13 Score=89.30 Aligned_cols=39 Identities=21% Similarity=0.383 Sum_probs=36.9
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 51 KDpn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
.||++||||+||||+||+++|..|+.+||+++ ++||+++
T Consensus 3 ~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~-~~eisk~ 41 (92)
T 2cs1_A 3 SGSSGIKKPMSASALFVQDHRPQFLIENPKTS-LEDATLQ 41 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSC-HHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHH
Confidence 58999999999999999999999999999998 9999874
No 18
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.38 E-value=1.3e-13 Score=87.69 Aligned_cols=38 Identities=29% Similarity=0.454 Sum_probs=36.0
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 52 Dpn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
+||.||||+|||||||+++|..|+.+||+++ ++||+++
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~~-~~eisk~ 38 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NSEISKQ 38 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTSC-HHHHHHH
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHH
Confidence 5899999999999999999999999999998 9999874
No 19
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.37 E-value=2e-13 Score=85.99 Aligned_cols=39 Identities=26% Similarity=0.531 Sum_probs=36.8
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 51 KDpn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
.||+.||||+|||||||+++|..|+.+||+++ ++||+++
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~-~~eisk~ 41 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLD-NRGATKI 41 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSC-TTHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHH
Confidence 58999999999999999999999999999998 9999874
No 20
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=5.7e-13 Score=93.70 Aligned_cols=43 Identities=51% Similarity=0.859 Sum_probs=39.4
Q ss_pred ccCCCCCCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 47 kKk~KDpn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
+++.+||++||||+|||||||+++|..|+.+||+++ ++||+++
T Consensus 93 kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~-~~ei~k~ 135 (173)
T 2yrq_A 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKK 135 (173)
T ss_dssp SCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSC-HHHHHHH
T ss_pred cccccCCccccCcccHHHHHHHHHHHHHHHHCCCCC-HHHHHHH
Confidence 345689999999999999999999999999999998 9999874
No 21
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.31 E-value=6e-13 Score=88.40 Aligned_cols=41 Identities=24% Similarity=0.407 Sum_probs=34.6
Q ss_pred CCCCCCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 49 k~KDpn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
..+||+.||||+|||||||+++|+.|+.+||+++ ++||+++
T Consensus 23 ~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~-~~eisk~ 63 (106)
T 4euw_A 23 SSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLH-NAELSKT 63 (106)
T ss_dssp -----CCCCCCCCHHHHHHHHHHHHHHHHCTTSC-HHHHHHH
T ss_pred ccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHH
Confidence 4588999999999999999999999999999998 9999874
No 22
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.29 E-value=7.5e-13 Score=83.19 Aligned_cols=38 Identities=29% Similarity=0.423 Sum_probs=34.3
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 52 Dpn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
+++.||||+|||||||+++|..|+.+||+++ ++||+++
T Consensus 1 g~~~pkRP~naf~lf~~~~r~~~~~~~p~~~-~~eisk~ 38 (81)
T 1i11_A 1 GSPHIKRPMNAFMVWAKDERRKILQAFPDMH-NSNISKI 38 (81)
T ss_dssp --CCSCCSCCHHHHHHHHHHHHHHTTCSSCC-HHHHHHH
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHH
Confidence 3678999999999999999999999999998 9999874
No 23
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.5e-12 Score=91.53 Aligned_cols=43 Identities=33% Similarity=0.517 Sum_probs=38.4
Q ss_pred ccCCCCCCCCCCCCchHHhHHHHHHHHHHHhCCC--CCcccccccC
Q 034563 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN--VKAVSAVSIY 90 (91)
Q Consensus 47 kKk~KDpn~PKRP~SAY~lF~~e~R~~iK~enP~--ls~v~eIsK~ 90 (91)
+...+|||+||||+|||||||+++|.+|+.+||+ ++ |+||+++
T Consensus 7 k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~-~~eisk~ 51 (173)
T 2yrq_A 7 GMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVN-FSEFSKK 51 (173)
T ss_dssp SSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCC-HHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC-HHHHHHH
Confidence 3456899999999999999999999999999999 45 8999864
No 24
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.28 E-value=9.8e-13 Score=82.66 Aligned_cols=38 Identities=26% Similarity=0.447 Sum_probs=32.6
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 52 Dpn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
.++.||||+|||||||+++|..|+.+||+++ ++||+++
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~-~~eisk~ 40 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLH-NAELSKM 40 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSSC-HHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHH
Confidence 5678999999999999999999999999998 9999874
No 25
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.24 E-value=2.8e-12 Score=78.34 Aligned_cols=36 Identities=28% Similarity=0.456 Sum_probs=32.6
Q ss_pred CCCCCCchHHhHHHHHHHHHHHhCCCCC-cccccccC
Q 034563 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVK-AVSAVSIY 90 (91)
Q Consensus 55 ~PKRP~SAY~lF~~e~R~~iK~enP~ls-~v~eIsK~ 90 (91)
+||||+||||+||+++|..|+.+||+++ +|+||+++
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~ 37 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKK 37 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHH
Confidence 5999999999999999999999999997 25999874
No 26
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.23 E-value=2.7e-12 Score=80.34 Aligned_cols=36 Identities=33% Similarity=0.506 Sum_probs=33.7
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 54 n~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
+.||||+|||||||+++|..|+.+||+++ ++||+++
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~-~~eisk~ 36 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMH-NSEISKR 36 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSC-HHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHH
Confidence 47999999999999999999999999998 9999874
No 27
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.22 E-value=2.3e-12 Score=78.39 Aligned_cols=36 Identities=28% Similarity=0.483 Sum_probs=30.6
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 54 n~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
+.||||+|||||||+++|..|+.+||+++ ++||+++
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~~-~~eisk~ 36 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLH-NAELSKM 36 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTSC-HHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHH
Confidence 46899999999999999999999999998 9999874
No 28
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=4.9e-12 Score=83.70 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=35.6
Q ss_pred CCCCCCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 49 k~KDpn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
...++|+||||+|||||||+++|++|+.+ +++ |+||+++
T Consensus 4 ~~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~~-~~eisK~ 42 (93)
T 2cto_A 4 GSSGMPNRKASRNAYYFFVQEKIPELRRR--GLP-VARVADA 42 (93)
T ss_dssp CCCCCCCCCSSCCHHHHHHHTTHHHHHHH--TCC-CSSHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHc--CCC-HHHHHHH
Confidence 35789999999999999999999999998 887 9999874
No 29
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.19 E-value=5.3e-12 Score=78.47 Aligned_cols=36 Identities=25% Similarity=0.395 Sum_probs=33.5
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 54 n~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
+.||||+|||||||+++|..|+.+||+++ ++||+++
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~-~~eisk~ 36 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMH-NAEISKR 36 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSC-HHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCC-HHHHHHH
Confidence 46899999999999999999999999998 9999874
No 30
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.18 E-value=6.2e-12 Score=79.89 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=33.0
Q ss_pred CCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 55 ~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
-|+||+|||||||+++|..|+.+||+++ ++||+++
T Consensus 2 ~pKRP~naf~lf~~~~r~~~~~~~P~~~-~~eisk~ 36 (86)
T 2lef_A 2 HIKKPLNAFMLYMKEMRANVVAESTLKE-SAAINQI 36 (86)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHSSCCC-HHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCC-HHHHHHH
Confidence 5899999999999999999999999998 9999874
No 31
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.13 E-value=1e-11 Score=83.01 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=34.9
Q ss_pred cccCCCCCCCC-CCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 46 VKSAKKDPNKP-KRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 46 ~kKk~KDpn~P-KRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
+.++.+|||+| |||+|||||||+++|+.|+ +++ |+||+++
T Consensus 7 ~~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~~-~~eisk~ 47 (108)
T 1v64_A 7 GQLKDKFDGRPTKPPPNSYSLYCAELMANMK----DVP-STERMVL 47 (108)
T ss_dssp CCSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TSC-HHHHHHH
T ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CCC-HHHHHHH
Confidence 34567899999 9999999999999999987 787 9999874
No 32
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.05 E-value=2.1e-11 Score=90.64 Aligned_cols=40 Identities=23% Similarity=0.412 Sum_probs=37.7
Q ss_pred CCCCCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 50 ~KDpn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
..||+.||||+|||||||+++|..|+.+||+++ |+||+++
T Consensus 36 ~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~-~~eisk~ 75 (238)
T 3tmm_A 36 SVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAK-TTELIRR 75 (238)
T ss_dssp CHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSC-HHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCC-HHHHHHH
Confidence 579999999999999999999999999999998 9999874
No 33
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.03 E-value=4e-11 Score=87.88 Aligned_cols=38 Identities=24% Similarity=0.447 Sum_probs=35.7
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 52 Dpn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
+|++||||+|||||||+++|+.|+.+||+++ |+||+++
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~~-~~eisk~ 43 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDAK-TTELIRR 43 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTSC-HHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCC-HHHHHHH
Confidence 5789999999999999999999999999998 9999874
No 34
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=98.97 E-value=1.6e-10 Score=76.65 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=32.9
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 54 n~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
|.|+||+||||+|++++|..|+.+||+ + |+||+|+
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~-~-~~evsK~ 37 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN-D-RVKALKA 37 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS-T-HHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC-C-HHHHHHH
Confidence 689999999999999999999999999 6 9999874
No 35
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=98.87 E-value=2.5e-10 Score=69.29 Aligned_cols=27 Identities=41% Similarity=0.621 Sum_probs=25.0
Q ss_pred CCCCCCCchHHhHHHHHHHHHHHhCCC
Q 034563 54 NKPKRPPSAFFVFLEEFRKVYKQEHPN 80 (91)
Q Consensus 54 n~PKRP~SAY~lF~~e~R~~iK~enP~ 80 (91)
|+||||+||||+||+++|..++.+||+
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p~ 27 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSPQ 27 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCHH
Confidence 689999999999999999999988873
No 36
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=98.84 E-value=1.1e-09 Score=75.70 Aligned_cols=38 Identities=29% Similarity=0.455 Sum_probs=35.6
Q ss_pred CCCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 52 Dpn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
+|+.||||++|||+|+++.|..|+.+||+++ ++||+++
T Consensus 1 g~~~~Krp~~af~~~~~~~~~ki~~~~P~~~-~~eisk~ 38 (159)
T 2gzk_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NSEISKQ 38 (159)
T ss_dssp CTTCCCCCCCHHHHHHHHHHHHHHHHCSSCC-HHHHHHH
T ss_pred CcCCCCCCCcHHHHHHHHHHHHHHHHCCCCC-HHHHHHH
Confidence 4789999999999999999999999999998 9999874
No 37
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=98.80 E-value=4.4e-11 Score=87.63 Aligned_cols=34 Identities=35% Similarity=0.445 Sum_probs=30.5
Q ss_pred ccCCCCCCCCCCCCchHHhHHHHHHHHHHHhCCC
Q 034563 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80 (91)
Q Consensus 47 kKk~KDpn~PKRP~SAY~lF~~e~R~~iK~enP~ 80 (91)
++..+|||+||||+|||||||+++|..|+.+||+
T Consensus 106 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p~ 139 (214)
T 3tq6_A 106 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQ 139 (214)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSSCSSHH
T ss_pred hhhhccccCcccccchhhhhHHHHHHhhccCCHH
Confidence 3456899999999999999999999999988876
No 38
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.69 E-value=4.2e-09 Score=69.41 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=29.2
Q ss_pred CCCCCCCCCCchHHhHHHHHHHHHHHhCCCCCcccccccC
Q 034563 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVSIY 90 (91)
Q Consensus 51 KDpn~PKRP~SAY~lF~~e~R~~iK~enP~ls~v~eIsK~ 90 (91)
.+.++||||+|||||||++++. ..++|+++ |+||+++
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~~~-~~eisK~ 40 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNHLP-LKERMVE 40 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTTSC-HHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCCCC-HHHHHHH
Confidence 4567899999999999999975 23455676 8999874
No 39
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=98.69 E-value=2.6e-10 Score=84.73 Aligned_cols=34 Identities=35% Similarity=0.445 Sum_probs=30.6
Q ss_pred ccCCCCCCCCCCCCchHHhHHHHHHHHHHHhCCC
Q 034563 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80 (91)
Q Consensus 47 kKk~KDpn~PKRP~SAY~lF~~e~R~~iK~enP~ 80 (91)
++..+|||+||||+|||||||+++|..|+.+||+
T Consensus 138 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p~ 171 (238)
T 3tmm_A 138 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQ 171 (238)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSHH
T ss_pred hhhhcccCCCCCCCcHHHHHHHHHHHHHhccCHH
Confidence 3456899999999999999999999999988876
No 40
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}
Probab=26.49 E-value=39 Score=22.94 Aligned_cols=15 Identities=20% Similarity=0.474 Sum_probs=11.5
Q ss_pred HHHHHHhCCCCCcccc
Q 034563 71 RKVYKQEHPNVKAVSA 86 (91)
Q Consensus 71 R~~iK~enP~ls~v~e 86 (91)
-++++++||++. |+.
T Consensus 121 L~~f~~~~p~~D-fs~ 135 (157)
T 2rh0_A 121 LERFQKENPGFD-FSG 135 (157)
T ss_dssp HHHHHHHCTTSC-CC-
T ss_pred HHHHHHHCCCCC-chh
Confidence 567889999997 654
No 41
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=24.57 E-value=41 Score=19.86 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=21.9
Q ss_pred CchHHhHHHHHHHHHHHhCCCCCccccccc
Q 034563 60 PSAFFVFLEEFRKVYKQEHPNVKAVSAVSI 89 (91)
Q Consensus 60 ~SAY~lF~~e~R~~iK~enP~ls~v~eIsK 89 (91)
..+|++|.+..-..|....|. +..++..
T Consensus 24 vpp~~I~~d~~L~~iA~~~P~--t~~eL~~ 51 (77)
T 2rhf_A 24 YSAFVVFTNATLEALAARQPR--TLAELAE 51 (77)
T ss_dssp CCHHHHCCHHHHHHHHHHCCC--SHHHHTT
T ss_pred CCcceeeCHHHHHHHHHhCCC--CHHHHhh
Confidence 568999999999999999996 2444443
No 42
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=22.13 E-value=51 Score=20.77 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhCCCCC
Q 034563 66 FLEEFRKVYKQEHPNVK 82 (91)
Q Consensus 66 F~~e~R~~iK~enP~ls 82 (91)
|...+-++|+..||++.
T Consensus 39 Fl~~~l~~~k~~NP~v~ 55 (102)
T 1s3a_A 39 FIEKRYVELKKANPDLP 55 (102)
T ss_dssp HHHHTHHHHHHHSTTCC
T ss_pred HHHHhhHHHHHHCCCce
Confidence 45678999999999987
No 43
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=21.51 E-value=44 Score=20.22 Aligned_cols=21 Identities=14% Similarity=0.047 Sum_probs=19.0
Q ss_pred CchHHhHHHHHHHHHHHhCCC
Q 034563 60 PSAFFVFLEEFRKVYKQEHPN 80 (91)
Q Consensus 60 ~SAY~lF~~e~R~~iK~enP~ 80 (91)
..+|++|.+..-..|....|.
T Consensus 26 vp~~~If~d~tL~~iA~~~P~ 46 (85)
T 2kv2_A 26 VHYFNIFNTVTLKKLAESLSS 46 (85)
T ss_dssp SCHHHHCCHHHHHHHHHHCCS
T ss_pred CCcceeECHHHHHHHHHhCCC
Confidence 568999999999999999997
Done!