Your job contains 1 sequence.
>034564
MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
GQLKNKYGDAFIRGNNVLYISTSKRTLADGA
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 034564
(91 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2043969 - symbol:LSM6B "AT2G43810" species:370... 413 1.3e-38 1
TAIR|locus:2080487 - symbol:LSM6A "AT3G59810" species:370... 400 3.0e-37 1
UNIPROTKB|P62312 - symbol:LSM6 "U6 snRNA-associated Sm-li... 352 3.7e-32 1
MGI|MGI:1925901 - symbol:Lsm6 "LSM6 homolog, U6 small nuc... 352 3.7e-32 1
ZFIN|ZDB-GENE-040625-50 - symbol:lsm6 "LSM6 homolog, U6 s... 349 7.7e-32 1
WB|WBGene00003080 - symbol:lsm-6 species:6239 "Caenorhabd... 326 2.1e-29 1
FB|FBgn0034564 - symbol:CG9344 species:7227 "Drosophila m... 316 2.4e-28 1
DICTYBASE|DDB_G0275719 - symbol:lsm6 "putative U6 small n... 261 1.6e-22 1
POMBASE|SPAC2F3.17c - symbol:lsm6 "U6 snRNP-associated pr... 259 2.6e-22 1
GENEDB_PFALCIPARUM|PF13_0142 - symbol:PF13_0142 "u6 snRNA... 257 4.3e-22 1
UNIPROTKB|Q8IE68 - symbol:PF13_0142 "Lsm6 homologue, puta... 257 4.3e-22 1
ASPGD|ASPL0000032943 - symbol:AN10719 species:162425 "Eme... 236 7.2e-20 1
UNIPROTKB|A4RQ29 - symbol:LSM6 "U6 snRNA-associated Sm-li... 226 8.3e-19 1
UNIPROTKB|F1P4B8 - symbol:SNRPF "Uncharacterized protein"... 185 1.8e-14 1
UNIPROTKB|Q3T0Z8 - symbol:SNRPF "Small nuclear ribonucleo... 185 1.8e-14 1
UNIPROTKB|F1Q0L5 - symbol:SNRPF "Uncharacterized protein"... 185 1.8e-14 1
UNIPROTKB|P62306 - symbol:SNRPF "Small nuclear ribonucleo... 185 1.8e-14 1
UNIPROTKB|F1SQR4 - symbol:SNRPF "Uncharacterized protein"... 185 1.8e-14 1
MGI|MGI:1917128 - symbol:Snrpf "small nuclear ribonucleop... 185 1.8e-14 1
RGD|1588229 - symbol:Snrpf "small nuclear ribonucleoprote... 185 1.8e-14 1
ZFIN|ZDB-GENE-040930-9 - symbol:snrpf "small nuclear ribo... 185 1.8e-14 1
GENEDB_PFALCIPARUM|PF11_0280 - symbol:PF11_0280 "small nu... 181 4.9e-14 1
UNIPROTKB|Q8II94 - symbol:PF11_0280 "Small nuclear ribonu... 181 4.9e-14 1
UNIPROTKB|J9NRX2 - symbol:J9NRX2 "Uncharacterized protein... 172 4.4e-13 1
FB|FBgn0000426 - symbol:SmF "Small ribonucleoprotein part... 169 9.1e-13 1
WB|WBGene00004918 - symbol:snr-5 species:6239 "Caenorhabd... 163 3.9e-12 1
UNIPROTKB|P34659 - symbol:snr-5 "Probable small nuclear r... 163 3.9e-12 1
DICTYBASE|DDB_G0278821 - symbol:snrpF "putative small nuc... 158 1.3e-11 1
SGD|S000002786 - symbol:LSM6 "Lsm (Like Sm) protein" spec... 152 5.8e-11 1
POMBASE|SPBC3E7.14 - symbol:smf1 "Sm snRNP core protein S... 143 5.2e-10 1
SGD|S000006386 - symbol:SMX3 "Core Sm protein Sm F" speci... 135 3.6e-09 1
TAIR|locus:4010713621 - symbol:AT2G14285 "AT2G14285" spec... 133 5.9e-09 1
ASPGD|ASPL0000063345 - symbol:AN10966 species:162425 "Eme... 128 2.0e-08 1
UNIPROTKB|G4NHA4 - symbol:MGG_03895 "Small nuclear ribonu... 122 8.7e-08 1
UNIPROTKB|D4AA39 - symbol:D4AA39 "Uncharacterized protein... 116 3.8e-07 1
POMBASE|SPBC30D10.06 - symbol:lsm4 "U6 snRNP-associated p... 110 1.6e-06 1
POMBASE|SPBC4B4.05 - symbol:smg1 "U4/U6 x U5 tri-snRNP co... 106 4.3e-06 1
ZFIN|ZDB-GENE-040912-105 - symbol:zgc:103688 "zgc:103688"... 101 1.5e-05 1
FB|FBgn0261791 - symbol:SmG "Small ribonucleoprotein part... 100 1.9e-05 1
ASPGD|ASPL0000001547 - symbol:AN10781 species:162425 "Eme... 97 3.9e-05 1
DICTYBASE|DDB_G0282863 - symbol:snrpG "putative small nuc... 97 3.9e-05 1
UNIPROTKB|Q3ZBL0 - symbol:SNRPG "Small nuclear ribonucleo... 97 3.9e-05 1
UNIPROTKB|P62308 - symbol:SNRPG "Small nuclear ribonucleo... 97 3.9e-05 1
UNIPROTKB|F2Z5V2 - symbol:LOC100525867 "Uncharacterized p... 97 3.9e-05 1
RGD|1584713 - symbol:Snrpg "small nuclear ribonucleoprote... 97 3.9e-05 1
UNIPROTKB|A8MWD9 - symbol:A8MWD9 "Small nuclear ribonucle... 93 0.00010 1
TAIR|locus:2180295 - symbol:emb1644 "AT5G27720" species:3... 93 0.00010 1
WB|WBGene00003078 - symbol:lsm-4 species:6239 "Caenorhabd... 93 0.00010 1
DICTYBASE|DDB_G0287053 - symbol:lsm4 "putative U6 small n... 94 0.00012 1
UNIPROTKB|G4MXF4 - symbol:MGG_10740 "Sm snRNP core protei... 92 0.00013 1
TAIR|locus:2061446 - symbol:SNRNP-G "AT2G23930" species:3... 91 0.00017 1
TAIR|locus:2080777 - symbol:AT3G11500 "AT3G11500" species... 89 0.00027 1
UNIPROTKB|Q3ZBK6 - symbol:LSM4 "U6 snRNA-associated Sm-li... 85 0.00072 1
UNIPROTKB|Q9Y4Z0 - symbol:LSM4 "U6 snRNA-associated Sm-li... 85 0.00072 1
MGI|MGI:1354692 - symbol:Lsm4 "LSM4 homolog, U6 small nuc... 85 0.00072 1
TAIR|locus:2014480 - symbol:LSM2 "AT1G03330" species:3702... 85 0.00072 1
ZFIN|ZDB-GENE-040426-1652 - symbol:lsm4 "LSM4 homolog, U6... 85 0.00072 1
>TAIR|locus:2043969 [details] [associations]
symbol:LSM6B "AT2G43810" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] INTERPRO:IPR001163
EMBL:CP002685 GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AC002333 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:P54999 KO:K12625 EMBL:BT008305 EMBL:AK227857
EMBL:AK317095 IPI:IPI00538248 PIR:G84870 RefSeq:NP_001078052.1
RefSeq:NP_181909.1 UniGene:At.36842 ProteinModelPortal:O22823
SMR:O22823 STRING:O22823 PRIDE:O22823 EnsemblPlants:AT2G43810.1
EnsemblPlants:AT2G43810.2 GeneID:818985 KEGG:ath:AT2G43810
TAIR:At2g43810 InParanoid:O22823 OMA:YISTTKG PhylomeDB:O22823
ProtClustDB:CLSN2683093 ArrayExpress:O22823 Genevestigator:O22823
Uniprot:O22823
Length = 91
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 80/91 (87%), Positives = 84/91 (92%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
MS GEK S TTKTPADFLKSIRG+PVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVN
Sbjct: 1 MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVN 60
Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91
GQLKN YGDAF+RGNNVLYIST+K TL+DGA
Sbjct: 61 GQLKNTYGDAFVRGNNVLYISTTKGTLSDGA 91
>TAIR|locus:2080487 [details] [associations]
symbol:LSM6A "AT3G59810" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] INTERPRO:IPR001163
EMBL:CP002686 EMBL:AL138647 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:P54999 KO:K12625
OMA:YISTSTK ProtClustDB:CLSN2683093 EMBL:BT002850 EMBL:BT004433
IPI:IPI00517943 PIR:T47805 RefSeq:NP_191540.1 UniGene:At.34551
ProteinModelPortal:Q9M1Z3 SMR:Q9M1Z3 IntAct:Q9M1Z3 STRING:Q9M1Z3
PRIDE:Q9M1Z3 EnsemblPlants:AT3G59810.1 GeneID:825150
KEGG:ath:AT3G59810 TAIR:At3g59810 InParanoid:Q9M1Z3
PhylomeDB:Q9M1Z3 ArrayExpress:Q9M1Z3 Genevestigator:Q9M1Z3
Uniprot:Q9M1Z3
Length = 91
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 80/91 (87%), Positives = 81/91 (89%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
MS EK S TTKTPADFLKSIRGRPVVVKLNSGVDYRG L CLDGYMNIAMEQTEEYVN
Sbjct: 1 MSGVEEKVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVN 60
Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91
GQLKNKYGDAFIRGNNVLYIST T+ADGA
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTVNMTVADGA 91
>UNIPROTKB|P62312 [details] [associations]
symbol:LSM6 "U6 snRNA-associated Sm-like protein LSm6"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
EMBL:AJ238098 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:CH471056 GO:GO:0008033
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0006364 GO:GO:0030532
GO:GO:0043928 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K12625 EMBL:AF182292 EMBL:AK312126 EMBL:AC097372
EMBL:BC016026 IPI:IPI00001146 RefSeq:NP_009011.1 UniGene:Hs.190520
ProteinModelPortal:P62312 SMR:P62312 DIP:DIP-31128N IntAct:P62312
STRING:P62312 PhosphoSite:P62312 DMDM:61227727 PaxDb:P62312
PeptideAtlas:P62312 PRIDE:P62312 DNASU:11157
Ensembl:ENST00000296581 Ensembl:ENST00000502781
Ensembl:ENST00000504181 Ensembl:ENST00000515311 GeneID:11157
KEGG:hsa:11157 UCSC:uc003ikq.4 CTD:11157 GeneCards:GC04P147097
HGNC:HGNC:17017 HPA:HPA045079 MIM:607286 neXtProt:NX_P62312
PharmGKB:PA128394584 HOVERGEN:HBG052369 InParanoid:P62312
OMA:YISTSTK OrthoDB:EOG4Q2DH6 PhylomeDB:P62312 GenomeRNAi:11157
NextBio:42433 ArrayExpress:P62312 Bgee:P62312 CleanEx:HS_LSM6
Genevestigator:P62312 GermOnline:ENSG00000164167 Uniprot:P62312
Length = 80
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 67/79 (84%), Positives = 72/79 (91%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 61
Query: 69 DAFIRGNNVLYISTSKRTL 87
DAFIRGNNVLYIST KR +
Sbjct: 62 DAFIRGNNVLYISTQKRRM 80
>MGI|MGI:1925901 [details] [associations]
symbol:Lsm6 "LSM6 homolog, U6 small nuclear RNA associated
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006402 "mRNA catabolic process" evidence=ISO] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=ISO]
MGI:MGI:1925901 INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
GO:GO:0008033 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0006364
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K12625 CTD:11157 HOVERGEN:HBG052369 OMA:YISTSTK
OrthoDB:EOG4Q2DH6 EMBL:AK019126 EMBL:BC030427 IPI:IPI00129873
RefSeq:NP_001177933.1 RefSeq:NP_084421.1 UniGene:Mm.28694
ProteinModelPortal:P62313 SMR:P62313 STRING:P62313
PhosphoSite:P62313 PaxDb:P62313 PRIDE:P62313
Ensembl:ENSMUST00000051867 Ensembl:ENSMUST00000130325 GeneID:78651
KEGG:mmu:78651 InParanoid:P62313 NextBio:349274 Bgee:P62313
Genevestigator:P62313 GermOnline:ENSMUSG00000031683 Uniprot:P62313
Length = 80
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 67/79 (84%), Positives = 72/79 (91%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 61
Query: 69 DAFIRGNNVLYISTSKRTL 87
DAFIRGNNVLYIST KR +
Sbjct: 62 DAFIRGNNVLYISTQKRRM 80
>ZFIN|ZDB-GENE-040625-50 [details] [associations]
symbol:lsm6 "LSM6 homolog, U6 small nuclear RNA
associated (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163
ZFIN:ZDB-GENE-040625-50 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K12625 CTD:11157 HOVERGEN:HBG052369 OMA:YISTSTK
OrthoDB:EOG4Q2DH6 HOGENOM:HOG000223542 GeneTree:ENSGT00700000104493
EMBL:BX324156 EMBL:BC072549 IPI:IPI00851796 RefSeq:NP_001002077.1
UniGene:Dr.81719 STRING:Q6IMW9 Ensembl:ENSDART00000053773
Ensembl:ENSDART00000147458 GeneID:415167 KEGG:dre:415167
InParanoid:Q6IMW9 NextBio:20818839 Uniprot:Q6IMW9
Length = 80
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 66/79 (83%), Positives = 72/79 (91%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAVEQTEEYVNGQLKNKYG 61
Query: 69 DAFIRGNNVLYISTSKRTL 87
DAF+RGNNVLYIST KR +
Sbjct: 62 DAFLRGNNVLYISTQKRKM 80
>WB|WBGene00003080 [details] [associations]
symbol:lsm-6 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040002 "collagen and cuticulin-based cuticle development"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
INTERPRO:IPR001163 GO:GO:0009792 GO:GO:0040010 GO:GO:0002119
GO:GO:0010171 GO:GO:0040011 GO:GO:0040002 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K12625 OMA:YISTSTK HOGENOM:HOG000223542
EMBL:FO080942 GeneTree:ENSGT00700000104493 HSSP:Q8ZYG5
RefSeq:NP_490883.1 ProteinModelPortal:Q95XN6 SMR:Q95XN6
STRING:Q95XN6 PaxDb:Q95XN6 EnsemblMetazoa:Y71G12B.14 GeneID:190601
KEGG:cel:CELE_Y71G12B.14 UCSC:Y71G12B.14 CTD:190601
WormBase:Y71G12B.14 InParanoid:Q95XN6 NextBio:946330 Uniprot:Q95XN6
Length = 77
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 61/73 (83%), Positives = 68/73 (93%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+ PA+FLK + G+PVVVKLNSGVDYRGILACLDGYMNIA+EQTEEY NGQL+NKYGDAFI
Sbjct: 5 QNPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYGDAFI 64
Query: 73 RGNNVLYISTSKR 85
RGNNVLYISTS +
Sbjct: 65 RGNNVLYISTSTK 77
>FB|FBgn0034564 [details] [associations]
symbol:CG9344 species:7227 "Drosophila melanogaster"
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005688 "U6 snRNP"
evidence=NAS] INTERPRO:IPR001163 EMBL:AE013599 GO:GO:0005681
GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005688
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HSSP:P54999 KO:K12625 OMA:YISTSTK GeneTree:ENSGT00700000104493
EMBL:AY113474 RefSeq:NP_611528.1 UniGene:Dm.18844 SMR:Q9W2P5
IntAct:Q9W2P5 MINT:MINT-967510 STRING:Q9W2P5
EnsemblMetazoa:FBtr0071520 GeneID:37372 KEGG:dme:Dmel_CG9344
UCSC:CG9344-RA FlyBase:FBgn0034564 InParanoid:Q9W2P5
OrthoDB:EOG45DV65 GenomeRNAi:37372 NextBio:803315 Uniprot:Q9W2P5
Length = 79
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 58/70 (82%), Positives = 63/70 (90%)
Query: 16 ADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGN 75
+ F+ I GRPV VKLN+GVDYRG+LACLDGYMNI +EQTEEYVNGQLKNKYGDAFIRGN
Sbjct: 8 SQFINQIHGRPVAVKLNNGVDYRGVLACLDGYMNICLEQTEEYVNGQLKNKYGDAFIRGN 67
Query: 76 NVLYISTSKR 85
NVLYIST KR
Sbjct: 68 NVLYISTQKR 77
>DICTYBASE|DDB_G0275719 [details] [associations]
symbol:lsm6 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0275719
INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0005730
GenomeReviews:CM000151_GR GO:GO:0003723 EMBL:AAFI02000013
GO:GO:0008033 GO:GO:0006402 GO:GO:0000398 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0006364 GO:GO:0046540 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 RefSeq:XP_643590.1 HSSP:P54999
ProteinModelPortal:Q552U1 STRING:Q552U1 EnsemblProtists:DDB0233198
GeneID:8620177 KEGG:ddi:DDB_G0275719 KO:K12625 OMA:EQTEEYL
Uniprot:Q552U1
Length = 88
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 50/69 (72%), Positives = 56/69 (81%)
Query: 17 DFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNN 76
+F K GRPVVVKLN+GV+YRGIL +DG MNI MEQTEEY+NGQLK KYGD F+RGNN
Sbjct: 19 NFFKMCIGRPVVVKLNNGVEYRGILEVVDGNMNIVMEQTEEYLNGQLKTKYGDCFLRGNN 78
Query: 77 VLYISTSKR 85
VLYIS R
Sbjct: 79 VLYISAQPR 87
>POMBASE|SPAC2F3.17c [details] [associations]
symbol:lsm6 "U6 snRNP-associated protein Lsm6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005688 "U6 snRNP" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0030490 "maturation of SSU-rRNA" evidence=ISO] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=ISO] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISO] PomBase:SPAC2F3.17c
INTERPRO:IPR001163 GO:GO:0005737 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003723 GO:GO:0008033
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490
GO:GO:0045292 GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 PDB:3SWN PDB:4EMK PDBsum:3SWN
PDBsum:4EMK KO:K12625 OMA:YISTSTK OrthoDB:EOG4CC7B6 PIR:T38534
RefSeq:NP_594380.1 ProteinModelPortal:Q9UUI1 STRING:Q9UUI1
EnsemblFungi:SPAC2F3.17c.1 GeneID:2541997 KEGG:spo:SPAC2F3.17c
HOGENOM:HOG000223542 EvolutionaryTrace:Q9UUI1 NextBio:20803078
Uniprot:Q9UUI1
Length = 75
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 45/68 (66%), Positives = 60/68 (88%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
+P +FL + G+ V+++L+SGVDY+GIL+CLDGYMN+A+E+TEEYVNG+ N YGDAFIR
Sbjct: 4 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIR 63
Query: 74 GNNVLYIS 81
GNNVLY+S
Sbjct: 64 GNNVLYVS 71
>GENEDB_PFALCIPARUM|PF13_0142 [details] [associations]
symbol:PF13_0142 "u6 snRNA-associated sm-like
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] INTERPRO:IPR001163
GO:GO:0005681 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AL844509
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:P54999 KO:K12625
OMA:YISTSTK HOGENOM:HOG000223542 RefSeq:XP_001349990.1
ProteinModelPortal:Q8IE68 PRIDE:Q8IE68
EnsemblProtists:PF13_0142:mRNA GeneID:814113 KEGG:pfa:PF13_0142
EuPathDB:PlasmoDB:PF3D7_1325000 ProtClustDB:CLSZ2433143
Uniprot:Q8IE68
Length = 77
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 45/70 (64%), Positives = 60/70 (85%)
Query: 11 TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
+T +P DF++S++GR V+V+LN+G DY+GILACLD MN+A+EQTEEY +G+L +KY DA
Sbjct: 2 STNSPKDFVESLKGRAVIVRLNNGTDYKGILACLDERMNVALEQTEEYYDGELTDKYNDA 61
Query: 71 FIRGNNVLYI 80
FIRGNNV YI
Sbjct: 62 FIRGNNVFYI 71
>UNIPROTKB|Q8IE68 [details] [associations]
symbol:PF13_0142 "Lsm6 homologue, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal complex"
evidence=ISS] INTERPRO:IPR001163 GO:GO:0005681 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AL844509 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:P54999 KO:K12625 OMA:YISTSTK
HOGENOM:HOG000223542 RefSeq:XP_001349990.1
ProteinModelPortal:Q8IE68 PRIDE:Q8IE68
EnsemblProtists:PF13_0142:mRNA GeneID:814113 KEGG:pfa:PF13_0142
EuPathDB:PlasmoDB:PF3D7_1325000 ProtClustDB:CLSZ2433143
Uniprot:Q8IE68
Length = 77
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 45/70 (64%), Positives = 60/70 (85%)
Query: 11 TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
+T +P DF++S++GR V+V+LN+G DY+GILACLD MN+A+EQTEEY +G+L +KY DA
Sbjct: 2 STNSPKDFVESLKGRAVIVRLNNGTDYKGILACLDERMNVALEQTEEYYDGELTDKYNDA 61
Query: 71 FIRGNNVLYI 80
FIRGNNV YI
Sbjct: 62 FIRGNNVFYI 71
>ASPGD|ASPL0000032943 [details] [associations]
symbol:AN10719 species:162425 "Emericella nidulans"
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005688 "U6 snRNP"
evidence=IEA] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] [GO:0030490
"maturation of SSU-rRNA" evidence=IEA] INTERPRO:IPR001163
EMBL:BN001305 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 OMA:YISTSTK HOGENOM:HOG000223542
EnsemblFungi:CADANIAT00003251 Uniprot:C8VFC9
Length = 80
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 47/79 (59%), Positives = 60/79 (75%)
Query: 6 EKGSATT-KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLK 64
E G+ + K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+++E+V+GQL
Sbjct: 2 ENGATSEGKDPSAFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEKSQEFVSGQLT 61
Query: 65 NKYGDAFIRGNNVLYISTS 83
YGDAFIRGNNVLYI+ +
Sbjct: 62 RSYGDAFIRGNNVLYIAAN 80
>UNIPROTKB|A4RQ29 [details] [associations]
symbol:LSM6 "U6 snRNA-associated Sm-like protein LSm6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 GO:GO:0003723
GO:GO:0008033 GO:GO:0000932 EMBL:CM001231 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490
GO:GO:0005732 GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K12625 RefSeq:XP_003710600.1
ProteinModelPortal:A4RQ29 STRING:A4RQ29 EnsemblFungi:MGG_05701T0
GeneID:2676106 KEGG:mgr:MGG_05701 OrthoDB:EOG4CC7B6 Uniprot:A4RQ29
Length = 83
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 47/81 (58%), Positives = 56/81 (69%)
Query: 6 EKGSATT---KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQ 62
E G+ T K P FL I G V VKLNSGV Y+G L +DGYMNIA+E+ EE+V GQ
Sbjct: 2 ENGTMTQGEGKDPTSFLGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQ 61
Query: 63 LKNKYGDAFIRGNNVLYISTS 83
K YGDAF+RGNNV+YI+ S
Sbjct: 62 KKRSYGDAFVRGNNVMYIAAS 82
>UNIPROTKB|F1P4B8 [details] [associations]
symbol:SNRPF "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005683 "U7
snRNP" evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR016487
PIRSF:PIRSF006609 INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0003723
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689
Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00700000104493 OMA:KWGHEYK EMBL:AADN02005953
IPI:IPI00574447 ProteinModelPortal:F1P4B8
Ensembl:ENSGALT00000018617 NextBio:20821146 Uniprot:F1P4B8
Length = 85
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 35/76 (46%), Positives = 48/76 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 6 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 65
Query: 75 NNVLYISTSKRTLADG 90
NNVLYI + DG
Sbjct: 66 NNVLYIRGVEEEEEDG 81
>UNIPROTKB|Q3T0Z8 [details] [associations]
symbol:SNRPF "Small nuclear ribonucleoprotein F"
species:9913 "Bos taurus" [GO:0005683 "U7 snRNP" evidence=ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR016487 PIRSF:PIRSF006609 INTERPRO:IPR001163
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
UniGene:Bt.24628 GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG052369 HOGENOM:HOG000223542
EMBL:BC102192 IPI:IPI00689386 RefSeq:NP_001181956.1
ProteinModelPortal:Q3T0Z8 SMR:Q3T0Z8 STRING:Q3T0Z8 PRIDE:Q3T0Z8
Ensembl:ENSBTAT00000021643 GeneID:615240 KEGG:bta:615240 CTD:6636
GeneTree:ENSGT00700000104493 InParanoid:Q3T0Z8 KO:K11098
OMA:KWGHEYK OrthoDB:EOG4TMR3P NextBio:20899519 Uniprot:Q3T0Z8
Length = 86
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 35/76 (46%), Positives = 48/76 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 66
Query: 75 NNVLYISTSKRTLADG 90
NNVLYI + DG
Sbjct: 67 NNVLYIRGVEEEEEDG 82
>UNIPROTKB|F1Q0L5 [details] [associations]
symbol:SNRPF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IEA] [GO:0005683 "U7
snRNP" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0003723 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00700000104493 OMA:KWGHEYK EMBL:AAEX03009953
Ensembl:ENSCAFT00000010335 Uniprot:F1Q0L5
Length = 111
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 35/76 (46%), Positives = 48/76 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 32 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 91
Query: 75 NNVLYISTSKRTLADG 90
NNVLYI + DG
Sbjct: 92 NNVLYIRGVEEEEEDG 107
>UNIPROTKB|P62306 [details] [associations]
symbol:SNRPF "Small nuclear ribonucleoprotein F"
species:9606 "Homo sapiens" [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IMP;TAS]
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IMP] [GO:0071013 "catalytic step
2 spliceosome" evidence=IDA] [GO:0005683 "U7 snRNP" evidence=IDA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0000387 "spliceosomal snRNP assembly" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0034660
"ncRNA metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR016487 PIRSF:PIRSF006609
INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005654 Reactome:REACT_1675
EMBL:CH471054 GO:GO:0003723 GO:GO:0000387 GO:GO:0034660
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Reactome:REACT_1788 GO:GO:0006369 Reactome:REACT_78 GO:GO:0005689
PDB:3S6N PDBsum:3S6N Pfam:PF01423 GO:GO:0008334 GO:GO:0005683
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG052369
PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D PDB:3CW1 PDB:3PGW PDBsum:2Y9A
PDBsum:2Y9B PDBsum:2Y9C PDBsum:2Y9D PDBsum:3CW1 PDBsum:3PGW
CTD:6636 KO:K11098 OMA:KWGHEYK OrthoDB:EOG4TMR3P EMBL:X85372
EMBL:CR456751 EMBL:AK311752 EMBL:BC002505 EMBL:BC063397
EMBL:BC128452 EMBL:BC128453 IPI:IPI00220528 PIR:S55053
RefSeq:NP_003086.1 UniGene:Hs.105465 ProteinModelPortal:P62306
SMR:P62306 DIP:DIP-31221N IntAct:P62306 MINT:MINT-1137229
STRING:P62306 PhosphoSite:P62306 DMDM:61237391 PaxDb:P62306
PeptideAtlas:P62306 PRIDE:P62306 Ensembl:ENST00000266735
GeneID:6636 KEGG:hsa:6636 UCSC:uc001tej.3 GeneCards:GC12P096252
HGNC:HGNC:11162 MIM:603541 neXtProt:NX_P62306 PharmGKB:PA36003
InParanoid:P62306 PhylomeDB:P62306 ChiTaRS:SNRPF
EvolutionaryTrace:P62306 GenomeRNAi:6636 NextBio:25853
PMAP-CutDB:P62306 ArrayExpress:P62306 Bgee:P62306 CleanEx:HS_SNRPF
Genevestigator:P62306 GermOnline:ENSG00000139343 Uniprot:P62306
Length = 86
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 35/76 (46%), Positives = 48/76 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 66
Query: 75 NNVLYISTSKRTLADG 90
NNVLYI + DG
Sbjct: 67 NNVLYIRGVEEEEEDG 82
>UNIPROTKB|F1SQR4 [details] [associations]
symbol:SNRPF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] [GO:0005683 "U7 snRNP"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR016487 PIRSF:PIRSF006609 INTERPRO:IPR001163
GO:GO:0008380 GO:GO:0003723 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423 GO:GO:0005683
InterPro:IPR006649 SMART:SM00651 CTD:6636
GeneTree:ENSGT00700000104493 KO:K11098 OMA:KWGHEYK EMBL:CU633406
RefSeq:NP_001177142.1 UniGene:Ssc.5241 ProteinModelPortal:F1SQR4
SMR:F1SQR4 PRIDE:F1SQR4 Ensembl:ENSSSCT00000000979 GeneID:100155855
KEGG:ssc:100155855 Uniprot:F1SQR4
Length = 86
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 35/76 (46%), Positives = 48/76 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 66
Query: 75 NNVLYISTSKRTLADG 90
NNVLYI + DG
Sbjct: 67 NNVLYIRGVEEEEEDG 82
>MGI|MGI:1917128 [details] [associations]
symbol:Snrpf "small nuclear ribonucleoprotein polypeptide F"
species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005683 "U7 snRNP"
evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR016487 PIRSF:PIRSF006609 MGI:MGI:1917128
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397 GO:GO:0003723
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689
Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG052369 CTD:6636 KO:K11098 OMA:KWGHEYK
OrthoDB:EOG4TMR3P EMBL:AK008240 IPI:IPI00943994 RefSeq:NP_081522.1
UniGene:Mm.259642 ProteinModelPortal:P62307 SMR:P62307
STRING:P62307 PhosphoSite:P62307 PaxDb:P62307 PRIDE:P62307
Ensembl:ENSMUST00000020203 GeneID:69878 KEGG:mmu:69878
InParanoid:P62307 NextBio:330523 Bgee:P62307 CleanEx:MM_SNRPF
Genevestigator:P62307 Uniprot:P62307
Length = 86
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 35/76 (46%), Positives = 48/76 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 66
Query: 75 NNVLYISTSKRTLADG 90
NNVLYI + DG
Sbjct: 67 NNVLYIRGVEEEEEDG 82
>RGD|1588229 [details] [associations]
symbol:Snrpf "small nuclear ribonucleoprotein polypeptide F"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA;ISO] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0005683 "U7 snRNP" evidence=IEA;ISO] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA;ISO] [GO:0008380 "RNA splicing"
evidence=IEA;ISO] [GO:0030532 "small nuclear ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR016487 PIRSF:PIRSF006609 RGD:1588229
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0003723 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 EMBL:CH473960
Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
CTD:6636 GeneTree:ENSGT00700000104493 KO:K11098 OrthoDB:EOG4TMR3P
IPI:IPI00768974 RefSeq:NP_001119563.1 UniGene:Rn.14918 SMR:D4AAT4
Ensembl:ENSRNOT00000007351 GeneID:680737 KEGG:rno:680737
UCSC:RGD:1588229 NextBio:719400 Uniprot:D4AAT4
Length = 86
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 35/76 (46%), Positives = 48/76 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 66
Query: 75 NNVLYISTSKRTLADG 90
NNVLYI + DG
Sbjct: 67 NNVLYIRGVEEEEEDG 82
>ZFIN|ZDB-GENE-040930-9 [details] [associations]
symbol:snrpf "small nuclear ribonucleoprotein
polypeptide F" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR016487
PIRSF:PIRSF006609 INTERPRO:IPR001163 ZFIN:ZDB-GENE-040930-9
GO:GO:0005634 GO:GO:0003676 GO:GO:0006396 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOVERGEN:HBG052369 HOGENOM:HOG000223542 CTD:6636
KO:K11098 OrthoDB:EOG4TMR3P EMBL:BC162363 EMBL:BC162369
EMBL:AY648838 IPI:IPI00513235 RefSeq:NP_001003881.1
UniGene:Dr.84144 STRING:Q6DRC1 GeneID:445404 KEGG:dre:445404
eggNOG:NOG237730 InParanoid:Q6DRC1 NextBio:20832108 Uniprot:Q6DRC1
Length = 86
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 36/76 (47%), Positives = 48/76 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEYV+G L G+ IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYVDGALAGHLGEVLIRC 66
Query: 75 NNVLYISTSKRTLADG 90
NNVLYI + DG
Sbjct: 67 NNVLYIRGVEEEEEDG 82
>GENEDB_PFALCIPARUM|PF11_0280 [details] [associations]
symbol:PF11_0280 "small nuclear
ribonucleoprotein F, putative" species:5833 "Plasmodium falciparum"
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR016487
PIRSF:PIRSF006609 INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0003676
GO:GO:0006396 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:AE014186 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HOGENOM:HOG000223542 KO:K11098 RefSeq:XP_001347951.2
ProteinModelPortal:Q8II94 PRIDE:Q8II94
EnsemblProtists:PF11_0280:mRNA GeneID:810827 KEGG:pfa:PF11_0280
EuPathDB:PlasmoDB:PF3D7_1126900 ProtClustDB:CLSZ2430737
Uniprot:Q8II94
Length = 86
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 33/76 (43%), Positives = 50/76 (65%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL S+ G V++KL G++Y+GIL DGYMNI + EE+++G+ K G+ F+R
Sbjct: 10 PKPFLNSLAGNRVIIKLKWGMEYKGILKSFDGYMNIRLTNAEEWIHGEFKGTLGEIFLRC 69
Query: 75 NNVLYI-STSKRTLAD 89
NN+LYI +++T D
Sbjct: 70 NNILYIREDNEKTKTD 85
>UNIPROTKB|Q8II94 [details] [associations]
symbol:PF11_0280 "Small nuclear ribonucleoprotein F,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR016487
PIRSF:PIRSF006609 INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0003676
GO:GO:0006396 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:AE014186 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HOGENOM:HOG000223542 KO:K11098 RefSeq:XP_001347951.2
ProteinModelPortal:Q8II94 PRIDE:Q8II94
EnsemblProtists:PF11_0280:mRNA GeneID:810827 KEGG:pfa:PF11_0280
EuPathDB:PlasmoDB:PF3D7_1126900 ProtClustDB:CLSZ2430737
Uniprot:Q8II94
Length = 86
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 33/76 (43%), Positives = 50/76 (65%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL S+ G V++KL G++Y+GIL DGYMNI + EE+++G+ K G+ F+R
Sbjct: 10 PKPFLNSLAGNRVIIKLKWGMEYKGILKSFDGYMNIRLTNAEEWIHGEFKGTLGEIFLRC 69
Query: 75 NNVLYI-STSKRTLAD 89
NN+LYI +++T D
Sbjct: 70 NNILYIREDNEKTKTD 85
>UNIPROTKB|J9NRX2 [details] [associations]
symbol:J9NRX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR016487
PIRSF:PIRSF006609 INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0006396
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 GeneTree:ENSGT00700000104493 OMA:EMLLRNN
EMBL:AAEX03016702 Ensembl:ENSCAFT00000047358 Uniprot:J9NRX2
Length = 86
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 34/76 (44%), Positives = 46/76 (60%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P F + G+PV VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 7 PKPFPNGLTGKPVRVKLKWGMEYQGYLESVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 66
Query: 75 NNVLYISTSKRTLADG 90
NNVLYI + DG
Sbjct: 67 NNVLYIRGVEEEEEDG 82
>FB|FBgn0000426 [details] [associations]
symbol:SmF "Small ribonucleoprotein particle protein SmF"
species:7227 "Drosophila melanogaster" [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS;NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS;NAS] [GO:0005681
"spliceosomal complex" evidence=ISS;NAS] [GO:0007052 "mitotic
spindle organization" evidence=IMP] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] InterPro:IPR016487 PIRSF:PIRSF006609
INTERPRO:IPR001163 EMBL:AE013599 GO:GO:0007052 GO:GO:0003723
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 GeneTree:ENSGT00700000104493 KO:K11098
OMA:KWGHEYK EMBL:L33341 EMBL:AY118862 RefSeq:NP_523708.2
UniGene:Dm.14460 ProteinModelPortal:Q24297 SMR:Q24297
DIP:DIP-20723N IntAct:Q24297 MINT:MINT-768802 STRING:Q24297
PaxDb:Q24297 EnsemblMetazoa:FBtr0088010 GeneID:36314
KEGG:dme:Dmel_CG16792 CTD:36314 FlyBase:FBgn0000426
InParanoid:Q24297 OrthoDB:EOG4DBRXC PhylomeDB:Q24297
GenomeRNAi:36314 NextBio:797873 Bgee:Q24297 GermOnline:CG16792
Uniprot:Q24297
Length = 88
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 31/66 (46%), Positives = 42/66 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G +Y+G L +DGYMN+ + TEE + G + G+ IR
Sbjct: 9 PKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEVLIRC 68
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 69 NNVLYI 74
>WB|WBGene00004918 [details] [associations]
symbol:snr-5 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0040039
"inductive cell migration" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0032940 "secretion by cell" evidence=IMP] [GO:0040027 "negative
regulation of vulval development" evidence=IMP] [GO:0006915
"apoptotic process" evidence=IMP] InterPro:IPR016487
PIRSF:PIRSF006609 INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0006915 GO:GO:0002119
GO:GO:0032940 GO:GO:0008380 GO:GO:0018996 GO:GO:0006397
GO:GO:0000003 GO:GO:0003723 GO:GO:0040039 GO:GO:0030529
GO:GO:0040027 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:FO080278
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000223542 GeneTree:ENSGT00700000104493 KO:K11098
PIR:S44901 RefSeq:NP_498708.1 ProteinModelPortal:P34659 SMR:P34659
DIP:DIP-27408N IntAct:P34659 MINT:MINT-1076859 STRING:P34659
PaxDb:P34659 EnsemblMetazoa:ZK652.1.1 EnsemblMetazoa:ZK652.1.2
GeneID:176103 KEGG:cel:CELE_ZK652.1 UCSC:ZK652.1.1 CTD:176103
WormBase:ZK652.1 InParanoid:P34659 OMA:GENETSA NextBio:891128
Uniprot:P34659
Length = 85
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 29/66 (43%), Positives = 43/66 (65%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL S+ G+ VV KL G++Y+G+L +D YMN+ + EEY++G + G+ IR
Sbjct: 9 PKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRC 68
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 69 NNVLYV 74
>UNIPROTKB|P34659 [details] [associations]
symbol:snr-5 "Probable small nuclear ribonucleoprotein F"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR016487 PIRSF:PIRSF006609
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0006915 GO:GO:0002119 GO:GO:0032940
GO:GO:0008380 GO:GO:0018996 GO:GO:0006397 GO:GO:0000003
GO:GO:0003723 GO:GO:0040039 GO:GO:0030529 GO:GO:0040027
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:FO080278 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000223542 GeneTree:ENSGT00700000104493 KO:K11098
PIR:S44901 RefSeq:NP_498708.1 ProteinModelPortal:P34659 SMR:P34659
DIP:DIP-27408N IntAct:P34659 MINT:MINT-1076859 STRING:P34659
PaxDb:P34659 EnsemblMetazoa:ZK652.1.1 EnsemblMetazoa:ZK652.1.2
GeneID:176103 KEGG:cel:CELE_ZK652.1 UCSC:ZK652.1.1 CTD:176103
WormBase:ZK652.1 InParanoid:P34659 OMA:GENETSA NextBio:891128
Uniprot:P34659
Length = 85
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 29/66 (43%), Positives = 43/66 (65%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL S+ G+ VV KL G++Y+G+L +D YMN+ + EEY++G + G+ IR
Sbjct: 9 PKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRC 68
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 69 NNVLYV 74
>DICTYBASE|DDB_G0278821 [details] [associations]
symbol:snrpF "putative small nuclear
ribonucleoprotein F" species:44689 "Dictyostelium discoideum"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR016487
PIRSF:PIRSF006609 dictyBase:DDB_G0278821 INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0008380 GenomeReviews:CM000152_GR GO:GO:0006397
GO:GO:0003723 EMBL:AAFI02000024 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HSSP:P54999 KO:K11098 OMA:KWGHEYK RefSeq:XP_641988.1
ProteinModelPortal:Q54XP2 STRING:Q54XP2 PRIDE:Q54XP2
EnsemblProtists:DDB0233199 GeneID:8621720 KEGG:ddi:DDB_G0278821
Uniprot:Q54XP2
Length = 91
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 29/67 (43%), Positives = 45/67 (67%)
Query: 15 PADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL ++G+ + V+L G++YRGILA +D YMN+ + TEE+++G K G+ IR
Sbjct: 9 PKPFLYDLKGKKIAVRLKWGGMEYRGILASVDSYMNLQLAATEEWIDGANKGPLGEVLIR 68
Query: 74 GNNVLYI 80
NNVL++
Sbjct: 69 CNNVLFV 75
>SGD|S000002786 [details] [associations]
symbol:LSM6 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005688 "U6 snRNP" evidence=IDA;TAS]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA;IDA;IPI]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=IPI] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IPI] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0030490 "maturation of SSU-rRNA"
evidence=IMP] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] SGD:S000002786 INTERPRO:IPR001163 GO:GO:0005730
EMBL:BK006938 GO:GO:0003723 GO:GO:0008033 EMBL:U28373 GO:GO:0000932
GO:GO:0000956 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0046540 GO:GO:0030490 GO:GO:0005732 GO:GO:0005688
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K12625 OrthoDB:EOG4CC7B6 HOGENOM:HOG000223542 PIR:S61173
RefSeq:NP_010666.2 ProteinModelPortal:Q06406 SMR:Q06406
DIP:DIP-1418N IntAct:Q06406 MINT:MINT-403097 STRING:Q06406
PaxDb:Q06406 PeptideAtlas:Q06406 EnsemblFungi:YDR378C GeneID:851984
KEGG:sce:YDR378C OMA:FMNVALS NextBio:970136 Genevestigator:Q06406
GermOnline:YDR378C Uniprot:Q06406
Length = 86
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 38/82 (46%), Positives = 50/82 (60%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQ-TEEYV--NGQL 63
+GS TT +FL I G+ V VKL SG+ Y G L +DG+MN+A+ TE Y N +L
Sbjct: 8 EGSVTT----EFLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNNNKL 63
Query: 64 KNKYG-DAFIRGNNVLYISTSK 84
NK+ D F+RG V+YIS K
Sbjct: 64 LNKFNSDVFLRGTQVMYISEQK 85
>POMBASE|SPBC3E7.14 [details] [associations]
symbol:smf1 "Sm snRNP core protein Smf1" species:4896
"Schizosaccharomyces pombe" [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IC] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005681 "spliceosomal
complex" evidence=IC] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISO] InterPro:IPR016487 PIRSF:PIRSF006609
PomBase:SPBC3E7.14 INTERPRO:IPR001163 GO:GO:0005829 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0003723
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000223542 GO:GO:0005685 GO:GO:0000395 KO:K11098
PIR:T40388 RefSeq:NP_596101.1 ProteinModelPortal:O59734 SMR:O59734
IntAct:O59734 STRING:O59734 PRIDE:O59734 EnsemblFungi:SPBC3E7.14.1
GeneID:2540330 KEGG:spo:SPBC3E7.14 OMA:EMLLRNN OrthoDB:EOG4GJ2ZZ
NextBio:20801459 Uniprot:O59734
Length = 78
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL+ + G+PV+V+L G +Y+G L +D YMN+ + EE V+G G+ IR
Sbjct: 8 PKPFLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLGEILIRC 67
Query: 75 NNVLYISTS 83
NNVL++ S
Sbjct: 68 NNVLWVGES 76
>SGD|S000006386 [details] [associations]
symbol:SMX3 "Core Sm protein Sm F" species:4932
"Saccharomyces cerevisiae" [GO:0005682 "U5 snRNP" evidence=IDA]
[GO:0005685 "U1 snRNP" evidence=IDA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR016487
PIRSF:PIRSF006609 SGD:S000006386 INTERPRO:IPR001163 GO:GO:0005682
GO:GO:0003723 EMBL:BK006949 GO:GO:0000398 EMBL:U25842
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000223542 GO:GO:0005685 GeneTree:ENSGT00700000104493
KO:K11098 OMA:KWGHEYK OrthoDB:EOG4GJ2ZZ EMBL:X82778 EMBL:AY558049
PIR:S55055 RefSeq:NP_015508.1 PDB:1N9R PDB:1N9S PDBsum:1N9R
PDBsum:1N9S ProteinModelPortal:P54999 SMR:P54999 DIP:DIP-1634N
IntAct:P54999 MINT:MINT-391069 STRING:P54999 PaxDb:P54999
PeptideAtlas:P54999 EnsemblFungi:YPR182W GeneID:856312
KEGG:sce:YPR182W CYGD:YPR182w EvolutionaryTrace:P54999
NextBio:981688 Genevestigator:P54999 GermOnline:YPR182W
Uniprot:P54999
Length = 86
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 31/81 (38%), Positives = 41/81 (50%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYV 59
MS + + P FLK + V VKL + +YRG L D Y N+ + + EE+V
Sbjct: 1 MSESSDISAMQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFV 60
Query: 60 NGQLKNKYGDAFIRGNNVLYI 80
G G+ FIR NNVLYI
Sbjct: 61 AGVSHGTLGEIFIRCNNVLYI 81
>TAIR|locus:4010713621 [details] [associations]
symbol:AT2G14285 "AT2G14285" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR016487 PIRSF:PIRSF006609
INTERPRO:IPR001163 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003676 GO:GO:0006396 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000223542 KO:K11098 EMBL:AK220634
IPI:IPI00846292 RefSeq:NP_001077889.1 UniGene:At.49527
ProteinModelPortal:Q570S3 SMR:Q570S3 STRING:Q570S3
EnsemblPlants:AT2G14285.1 GeneID:5007874 KEGG:ath:AT2G14285
ProtClustDB:CLSN2699068 Genevestigator:Q570S3 Uniprot:Q570S3
Length = 61
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 35 VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 80
++Y+G LA +D YMN+ + TEEY++GQL G+ IR NNVLY+
Sbjct: 1 MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYV 46
>ASPGD|ASPL0000063345 [details] [associations]
symbol:AN10966 species:162425 "Emericella nidulans"
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR016487 PIRSF:PIRSF006609
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0003676 GO:GO:0006396
GO:GO:0030529 EMBL:BN001304 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000223542
OMA:KWGHEYK EnsemblFungi:CADANIAT00000721 Uniprot:C8VBV2
Length = 88
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 25/71 (35%), Positives = 44/71 (61%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL++ G V+V+L G +Y+G L +D YMN+ + TEE+++G+ G IR
Sbjct: 8 PRPFLQARVGTEVIVRLKWGQTEYKGRLESIDSYMNVLLRDTEEFIDGKPTGTLGLVLIR 67
Query: 74 GNNVLYISTSK 84
NN+L++ +++
Sbjct: 68 CNNILWMGSAE 78
>UNIPROTKB|G4NHA4 [details] [associations]
symbol:MGG_03895 "Small nuclear ribonucleoprotein F"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR016487
PIRSF:PIRSF006609 INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0003676
GO:GO:0006396 GO:GO:0030529 EMBL:CM001236 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K11098 RefSeq:XP_003719981.1 ProteinModelPortal:G4NHA4
EnsemblFungi:MGG_03895T0 GeneID:2677482 KEGG:mgr:MGG_03895
Uniprot:G4NHA4
Length = 88
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P L+ + + V V+L G +Y+G L +D YMNI + +EY++ +L+ G IR
Sbjct: 8 PRPMLQDLVNKDVYVRLKWGETEYKGRLVSIDSYMNIQLSNAQEYIDQKLEGDLGQILIR 67
Query: 74 GNNVLYISTS 83
NNVL++ ++
Sbjct: 68 CNNVLWVRSA 77
>UNIPROTKB|D4AA39 [details] [associations]
symbol:D4AA39 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR016487 PIRSF:PIRSF006609
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0006396 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 OrthoDB:EOG4TMR3P IPI:IPI00191860
PRIDE:D4AA39 Ensembl:ENSRNOT00000002290 Uniprot:D4AA39
Length = 83
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+V+L G +Y+ L +DGYM+ + + N ++ + G+A R
Sbjct: 7 PKPFLNGLTGKPVMVRLKRGTEYKDYLVSVDGYMDTQLANQK---NTEMGHCLGEALKRC 63
Query: 75 NNVLYISTSKRTLADG 90
NNV YI + DG
Sbjct: 64 NNVPYIRGVEEEEEDG 79
>POMBASE|SPBC30D10.06 [details] [associations]
symbol:lsm4 "U6 snRNP-associated protein Lsm4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0005688 "U6
snRNP" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISS] PomBase:SPBC30D10.06 INTERPRO:IPR001163 GO:GO:0005829
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0006402 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0006364 GO:GO:0046540 GO:GO:0045292 GO:GO:0005732
GO:GO:0005688 KO:K12623 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOGENOM:HOG000182713 OMA:GMQQQKQ
InterPro:IPR027141 PANTHER:PTHR23338 PIR:T40190 RefSeq:NP_596279.1
PDB:4EMH PDBsum:4EMH ProteinModelPortal:O14352 STRING:O14352
PRIDE:O14352 EnsemblFungi:SPBC30D10.06.1 GeneID:2540475
KEGG:spo:SPBC30D10.06 OrthoDB:EOG49S9H0 NextBio:20801602
Uniprot:O14352
Length = 121
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV-NGQLKNKYGDAFIR 73
P L + +GRP++V+L +G + G L D YMN+ + + + +G + + +IR
Sbjct: 3 PLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIR 62
Query: 74 GNNVLYISTSKRTLADGA 91
GNN+ Y+ L+ A
Sbjct: 63 GNNIKYLRIQDEVLSQVA 80
>POMBASE|SPBC4B4.05 [details] [associations]
symbol:smg1 "U4/U6 x U5 tri-snRNP complex Sm snRNP core
protein Smg1" species:4896 "Schizosaccharomyces pombe" [GO:0000395
"mRNA 5'-splice site recognition" evidence=IC] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IC] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=ISS]
PomBase:SPBC4B4.05 INTERPRO:IPR001163 GO:GO:0005829 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0003723
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 GO:GO:0005685
GO:GO:0000395 HOGENOM:HOG000223546 KO:K11099 OMA:DLFLNVV PIR:T40477
RefSeq:NP_596422.1 ProteinModelPortal:O74966 IntAct:O74966
STRING:O74966 EnsemblFungi:SPBC4B4.05.1 GeneID:2540855
KEGG:spo:SPBC4B4.05 OrthoDB:EOG4XWK7N NextBio:20801971
Uniprot:O74966
Length = 77
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT-EEYVNGQLKNKYGDA 70
+K A LK R V V+LN G+L D ++NI +E + EE V+G+ K K G
Sbjct: 2 SKAGAPDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGE-KVKIGSV 60
Query: 71 FIRGNNVLYIST 82
IRGN+V+ I T
Sbjct: 61 AIRGNSVIMIET 72
>ZFIN|ZDB-GENE-040912-105 [details] [associations]
symbol:zgc:103688 "zgc:103688" species:7955 "Danio
rerio" [GO:0003674 "molecular_function" evidence=ND]
INTERPRO:IPR001163 ZFIN:ZDB-GENE-040912-105 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG000513 OrthoDB:EOG4BRWND
HOGENOM:HOG000223546 KO:K11099 EMBL:BC081512 IPI:IPI00482230
RefSeq:NP_001004660.2 RefSeq:NP_001161373.1 UniGene:Dr.83589
ProteinModelPortal:Q66I63 STRING:Q66I63 PRIDE:Q66I63 GeneID:447922
KEGG:dre:447922 InParanoid:Q66I63 NextBio:20832442
ArrayExpress:Q66I63 Bgee:Q66I63 Uniprot:Q66I63
Length = 76
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + + +KLN G +GIL D +MN+ ++ T E G N G IRGN+++
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVVDDTIEMAPGGQMNTIGMVVIRGNSII 68
Query: 79 YISTSKR 85
+ +R
Sbjct: 69 MLEALER 75
>FB|FBgn0261791 [details] [associations]
symbol:SmG "Small ribonucleoprotein particle protein SmG"
species:7227 "Drosophila melanogaster" [GO:0005634 "nucleus"
evidence=IDA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS;IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0000245 "spliceosomal complex assembly" evidence=ISS]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] INTERPRO:IPR001163
GO:GO:0007052 EMBL:AE014298 GO:GO:0003723 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K11099 GeneTree:ENSGT00510000046985 OMA:VVIMEPK
EMBL:AY070698 EMBL:AY113538 RefSeq:NP_001138209.1
RefSeq:NP_573139.1 UniGene:Dm.19721 ProteinModelPortal:Q9VXE0
SMR:Q9VXE0 DIP:DIP-20715N IntAct:Q9VXE0 MINT:MINT-288468
STRING:Q9VXE0 PaxDb:Q9VXE0 PRIDE:Q9VXE0 EnsemblMetazoa:FBtr0074377
EnsemblMetazoa:FBtr0112993 GeneID:32636 KEGG:dme:Dmel_CG9742
CTD:32636 FlyBase:FBgn0261791 InParanoid:Q9VXE0 OrthoDB:EOG4GXD4H
PhylomeDB:Q9VXE0 ChiTaRS:SAMD4A GenomeRNAi:32636 NextBio:779578
Bgee:Q9VXE0 GermOnline:CG9742 Uniprot:Q9VXE0
Length = 76
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
+K + +++KLN G GIL D +MN+ ++ T E KN G IRGN+++
Sbjct: 9 VKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNSIV 68
Query: 79 YISTSKR 85
+ R
Sbjct: 69 MVEALDR 75
>ASPGD|ASPL0000001547 [details] [associations]
symbol:AN10781 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
INTERPRO:IPR001163 EMBL:BN001301 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000182713
OMA:GMQQQKQ InterPro:IPR027141 PANTHER:PTHR23338
EnsemblFungi:CADANIAT00006789 Uniprot:C8V1T8
Length = 119
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P L + +G P++V+L +G G LA D +MN+ + E + G K + ++R
Sbjct: 3 PLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILREVVQTSPEGDRFFKLPEVYVR 62
Query: 74 GNNVLYI 80
GNN+ Y+
Sbjct: 63 GNNIKYL 69
>DICTYBASE|DDB_G0282863 [details] [associations]
symbol:snrpG "putative small nuclear
ribonucleoprotein G" species:44689 "Dictyostelium discoideum"
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
dictyBase:DDB_G0282863 INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008380 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HSSP:O26745 KO:K11099 OMA:VVIMEPK RefSeq:XP_639367.1
ProteinModelPortal:Q54RX0 STRING:Q54RX0 PRIDE:Q54RX0
EnsemblProtists:DDB0233197 GeneID:8623807 KEGG:ddi:DDB_G0282863
eggNOG:NOG244831 Uniprot:Q54RX0
Length = 85
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
L + + + +KLN GIL D +MNIA++ T E V+ K + G IRGN++L
Sbjct: 11 LTKLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPTEKYEIGMVIIRGNSIL 70
>UNIPROTKB|Q3ZBL0 [details] [associations]
symbol:SNRPG "Small nuclear ribonucleoprotein G"
species:9913 "Bos taurus" [GO:0005683 "U7 snRNP" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOVERGEN:HBG000513 OrthoDB:EOG4BRWND KO:K11099 EMBL:BC103236
IPI:IPI00688337 RefSeq:NP_001035633.1 UniGene:Bt.70615
ProteinModelPortal:Q3ZBL0 SMR:Q3ZBL0 STRING:Q3ZBL0 PRIDE:Q3ZBL0
Ensembl:ENSBTAT00000007241 GeneID:522621 KEGG:bta:522621 CTD:6637
GeneTree:ENSGT00510000046985 InParanoid:Q3ZBL0 OMA:ESVEMAP
NextBio:20873564 Uniprot:Q3ZBL0
Length = 76
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + + +KLN G +GIL D +MN+ +++ E +N G IRGN+++
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSII 68
Query: 79 YISTSKR 85
+ +R
Sbjct: 69 MLEALER 75
>UNIPROTKB|P62308 [details] [associations]
symbol:SNRPG "Small nuclear ribonucleoprotein G"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=NAS]
[GO:0005681 "spliceosomal complex" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=NAS] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0005683 "U7 snRNP"
evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0000387 "spliceosomal snRNP assembly"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008334 "histone mRNA metabolic
process" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0034660
"ncRNA metabolic process" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
INTERPRO:IPR001163 GO:GO:0005829 EMBL:CH471053 GO:GO:0005654
Reactome:REACT_1675 GO:GO:0003723 GO:GO:0000387 GO:GO:0034660
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Reactome:REACT_1788 GO:GO:0000245 GO:GO:0006369 Reactome:REACT_78
GO:GO:0005689 PDB:3S6N PDBsum:3S6N Pfam:PF01423 GO:GO:0008334
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 HOVERGEN:HBG000513
PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D PDB:3CW1 PDB:3PGW PDBsum:2Y9A
PDBsum:2Y9B PDBsum:2Y9C PDBsum:2Y9D PDBsum:3CW1 PDBsum:3PGW
UniGene:Hs.631639 KO:K11099 CTD:6637 OMA:ESVEMAP EMBL:X85373
EMBL:CR456918 EMBL:AC079338 EMBL:BC000070 EMBL:BC022432
EMBL:BC066302 EMBL:BC070166 EMBL:BC071880 EMBL:BC106055
IPI:IPI00016572 PIR:S55054 RefSeq:NP_003087.1 UniGene:Hs.465167
UniGene:Hs.516076 UniGene:Hs.654528 ProteinModelPortal:P62308
SMR:P62308 DIP:DIP-34627N IntAct:P62308 MINT:MINT-1527983
STRING:P62308 PhosphoSite:P62308 DMDM:59800216 PeptideAtlas:P62308
PRIDE:P62308 DNASU:6637 Ensembl:ENST00000272348 GeneID:6637
KEGG:hsa:6637 UCSC:uc002sgp.3 GeneCards:GC02M070508 HGNC:HGNC:11163
MIM:603542 neXtProt:NX_P62308 PharmGKB:PA36004 InParanoid:P62308
PhylomeDB:P62308 ChiTaRS:SNRPG EvolutionaryTrace:P62308
GenomeRNAi:6637 NextBio:25857 ArrayExpress:P62308 Bgee:P62308
CleanEx:HS_SNRPG Genevestigator:P62308 GermOnline:ENSG00000143977
Uniprot:P62308
Length = 76
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + + +KLN G +GIL D +MN+ +++ E +N G IRGN+++
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSII 68
Query: 79 YISTSKR 85
+ +R
Sbjct: 69 MLEALER 75
>UNIPROTKB|F2Z5V2 [details] [associations]
symbol:LOC100525867 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA]
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 KO:K11099
GeneTree:ENSGT00510000046985 OMA:ESVEMAP EMBL:FP476045
RefSeq:XP_003125100.1 UniGene:Ssc.27001 ProteinModelPortal:F2Z5V2
SMR:F2Z5V2 PRIDE:F2Z5V2 Ensembl:ENSSSCT00000031595 GeneID:100525867
KEGG:ssc:100525867 Uniprot:F2Z5V2
Length = 76
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + + +KLN G +GIL D +MN+ +++ E +N G IRGN+++
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSII 68
Query: 79 YISTSKR 85
+ +R
Sbjct: 69 MLEALER 75
>RGD|1584713 [details] [associations]
symbol:Snrpg "small nuclear ribonucleoprotein polypeptide G"
species:10116 "Rattus norvegicus" [GO:0005683 "U7 snRNP"
evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] RGD:1584713 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:CH473957 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG000513 OrthoDB:EOG4BRWND
KO:K11099 CTD:6637 GeneTree:ENSGT00510000046985 OMA:ESVEMAP
EMBL:BC168750 IPI:IPI00211261 RefSeq:NP_001128557.1
RefSeq:XP_001079708.1 RefSeq:XP_003748887.1 UniGene:Rn.2397
SMR:B5DEP7 STRING:B5DEP7 Ensembl:ENSRNOT00000022367 GeneID:681031
GeneID:687679 KEGG:rno:681031 KEGG:rno:687679 UCSC:RGD:1584713
RGD:2321722 NextBio:720014 Genevestigator:B5DEP7 Uniprot:B5DEP7
Length = 76
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + + +KLN G +GIL D +MN+ +++ E +N G IRGN+++
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSII 68
Query: 79 YISTSKR 85
+ +R
Sbjct: 69 MLEALER 75
>UNIPROTKB|A8MWD9 [details] [associations]
symbol:A8MWD9 "Small nuclear ribonucleoprotein G-like
protein" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AC012318 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG000513 EMBL:CK005235
IPI:IPI00745343 UniGene:Hs.631639 ProteinModelPortal:A8MWD9
SMR:A8MWD9 STRING:A8MWD9 PaxDb:A8MWD9 PRIDE:A8MWD9
neXtProt:NX_A8MWD9 InParanoid:A8MWD9 OrthoDB:EOG4BRWND
ArrayExpress:A8MWD9 Bgee:A8MWD9 Genevestigator:A8MWD9
Uniprot:A8MWD9
Length = 76
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV-NGQLKNKYGDAFIRGNNV 77
LK + +KLN G +GIL D +MN+ +++ E +GQ KN G IRGN++
Sbjct: 9 LKKFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKN-IGMVEIRGNSI 67
Query: 78 LYISTSKR 85
+ + +R
Sbjct: 68 IMLEALER 75
>TAIR|locus:2180295 [details] [associations]
symbol:emb1644 "AT5G27720" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0009793 "embryo
development ending in seed dormancy" evidence=NAS]
INTERPRO:IPR001163 EMBL:CP002688 InterPro:IPR010920 SUPFAM:SSF50182
KO:K12623 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
InterPro:IPR027141 PANTHER:PTHR23338 OMA:NRNTFGG IPI:IPI00529680
RefSeq:NP_198124.1 UniGene:At.43840 ProteinModelPortal:F4K4E3
SMR:F4K4E3 PRIDE:F4K4E3 EnsemblPlants:AT5G27720.1 GeneID:832834
KEGG:ath:AT5G27720 Uniprot:F4K4E3
Length = 129
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTE-EYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + + +G + + +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
Query: 74 GNNVLYI 80
GN + Y+
Sbjct: 63 GNTIKYL 69
>WB|WBGene00003078 [details] [associations]
symbol:lsm-4 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0008340 "determination
of adult lifespan" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0006898 GO:GO:0040010
GO:GO:0008380 GO:GO:0006397 GO:GO:0010171 GO:GO:0040011
GO:GO:0003723 GO:GO:0030529 GO:GO:0007281 GO:GO:0040027
InterPro:IPR010920 SUPFAM:SSF50182 KO:K12623 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
GeneTree:ENSGT00610000086173 HOGENOM:HOG000182713 OMA:GMQQQKQ
InterPro:IPR027141 PANTHER:PTHR23338 EMBL:FO080735 PIR:T16234
RefSeq:NP_495514.1 ProteinModelPortal:Q19952 SMR:Q19952
IntAct:Q19952 STRING:Q19952 PaxDb:Q19952 EnsemblMetazoa:F32A5.7
GeneID:174193 KEGG:cel:CELE_F32A5.7 UCSC:F32A5.7 CTD:3772280
WormBase:F32A5.7 InParanoid:Q19952 NextBio:882941 Uniprot:Q19952
Length = 123
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 22/76 (28%), Positives = 40/76 (52%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ + P++V+L +G Y G L D +MNI + + +G K +A++R
Sbjct: 4 PLSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYVR 63
Query: 74 GNNVLYISTSKRTLAD 89
G+ + Y+ + T+ D
Sbjct: 64 GSTIKYLRIPE-TVVD 78
>DICTYBASE|DDB_G0287053 [details] [associations]
symbol:lsm4 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0287053
INTERPRO:IPR001163 GO:GO:0005730 GenomeReviews:CM000153_GR
GO:GO:0003723 GO:GO:0006402 GO:GO:0000398 EMBL:AAFI02000096
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0005732
GO:GO:0005688 KO:K12623 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141 PANTHER:PTHR23338
RefSeq:XP_637396.1 HSSP:P62314 ProteinModelPortal:Q54KX4
STRING:Q54KX4 EnsemblProtists:DDB0233378 GeneID:8625927
KEGG:ddi:DDB_G0287053 OMA:NRNTFGG Uniprot:Q54KX4
Length = 177
Score = 94 (38.1 bits), Expect = 0.00012, P = 0.00012
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN-KYGDAFIR 73
P L++ +G ++V+L +G Y G+L D +MNI ++ K K +IR
Sbjct: 3 PLSLLRTGQGHQIMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKFWKIQSCYIR 62
Query: 74 GNNVLYIS 81
GN + YIS
Sbjct: 63 GNTIKYIS 70
>UNIPROTKB|G4MXF4 [details] [associations]
symbol:MGG_10740 "Sm snRNP core protein Smg1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 EMBL:CM001232
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K11099 RefSeq:XP_003713291.1
ProteinModelPortal:G4MXF4 EnsemblFungi:MGG_10740T0 GeneID:2676245
KEGG:mgr:MGG_10740 Uniprot:G4MXF4
Length = 88
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 24/75 (32%), Positives = 36/75 (48%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P LK + V V+LN G++ D ++NI +E E +G K K G IRG
Sbjct: 4 PQPELKKYLDKKVFVQLNGSRKVVGVVRGYDVFLNIVLEDAFEEKDGGEKVKIGTVVIRG 63
Query: 75 NNVLYISTSKRTLAD 89
N+V+ + +R D
Sbjct: 64 NSVVMLEAMERIGGD 78
>TAIR|locus:2061446 [details] [associations]
symbol:SNRNP-G "AT2G23930" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:AC005170 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 EMBL:BT002035 EMBL:BT006498 EMBL:AY088256
IPI:IPI00541782 PIR:E84630 RefSeq:NP_179971.1 UniGene:At.27766
ProteinModelPortal:O82221 SMR:O82221 STRING:O82221 PRIDE:O82221
EnsemblPlants:AT2G23930.1 GeneID:816925 KEGG:ath:AT2G23930
GeneFarm:4625 TAIR:At2g23930 HOGENOM:HOG000223546 InParanoid:O82221
KO:K11099 OMA:DLFLNVV PhylomeDB:O82221 ProtClustDB:CLSN2683015
Genevestigator:O82221 GermOnline:AT2G23930 Uniprot:O82221
Length = 80
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P D LK + + +KLN+ G L D +MN+ ++ T E VNG K G IRG
Sbjct: 7 PPD-LKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE-VNGNDKTDIGMVVIRG 64
Query: 75 NNVLYI 80
N+++ +
Sbjct: 65 NSIVTV 70
>TAIR|locus:2080777 [details] [associations]
symbol:AT3G11500 "AT3G11500" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
INTERPRO:IPR001163 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0005730 GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AC008153 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:O29386 HOGENOM:HOG000223546 KO:K11099
ProtClustDB:CLSN2683015 EMBL:AY062818 EMBL:BT001203 IPI:IPI00542169
RefSeq:NP_187757.1 UniGene:At.27222 ProteinModelPortal:Q9CAX7
SMR:Q9CAX7 STRING:Q9CAX7 PRIDE:Q9CAX7 DNASU:820323
EnsemblPlants:AT3G11500.1 GeneID:820323 KEGG:ath:AT3G11500
TAIR:At3g11500 InParanoid:Q9CAX7 OMA:NIGMVEI PhylomeDB:Q9CAX7
ArrayExpress:Q9CAX7 Genevestigator:Q9CAX7 Uniprot:Q9CAX7
Length = 79
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P D LK + + +KLN+ G L D +MN+ ++ T E VNG K G IRG
Sbjct: 7 PPD-LKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVE-VNGDDKTDIGMVVIRG 64
Query: 75 NNVLYI 80
N+++ +
Sbjct: 65 NSIVTV 70
>UNIPROTKB|Q3ZBK6 [details] [associations]
symbol:LSM4 "U6 snRNA-associated Sm-like protein LSm4"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
KO:K12623 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG000486 EMBL:BC103243 IPI:IPI00718624
RefSeq:NP_001030513.1 UniGene:Bt.49560 ProteinModelPortal:Q3ZBK6
SMR:Q3ZBK6 STRING:Q3ZBK6 PRIDE:Q3ZBK6 Ensembl:ENSBTAT00000011312
GeneID:613634 KEGG:bta:613634 CTD:25804
GeneTree:ENSGT00610000086173 HOGENOM:HOG000182713 InParanoid:Q3ZBK6
OMA:GMQQQKQ OrthoDB:EOG4T784T NextBio:20898680 InterPro:IPR027141
PANTHER:PTHR23338 Uniprot:Q3ZBK6
Length = 139
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTE-EYVNGQLKNKYGDAFIR 73
P LK+ + P++V+L +G Y G L D +MNI + + +G + + +IR
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
Query: 74 GNNVLYI 80
G+ + Y+
Sbjct: 63 GSTIKYL 69
>UNIPROTKB|Q9Y4Z0 [details] [associations]
symbol:LSM4 "U6 snRNA-associated Sm-like protein LSm4"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=TAS] [GO:0005688 "U6
snRNP" evidence=TAS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0043928 GO:GO:0005688 KO:K12623 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG000486
CTD:25804 HOGENOM:HOG000182713 OMA:GMQQQKQ OrthoDB:EOG4T784T
InterPro:IPR027141 PANTHER:PTHR23338 EMBL:AJ238096 EMBL:AF182290
EMBL:AF117235 EMBL:AF251218 EMBL:BC000387 EMBL:BC003652
EMBL:BC022198 EMBL:BC023665 IPI:IPI00294955 RefSeq:NP_036453.1
UniGene:Hs.515255 ProteinModelPortal:Q9Y4Z0 SMR:Q9Y4Z0
DIP:DIP-31209N IntAct:Q9Y4Z0 MINT:MINT-1469332 STRING:Q9Y4Z0
PhosphoSite:Q9Y4Z0 DMDM:10720082 PaxDb:Q9Y4Z0 PeptideAtlas:Q9Y4Z0
PRIDE:Q9Y4Z0 DNASU:25804 Ensembl:ENST00000252816 GeneID:25804
KEGG:hsa:25804 UCSC:uc002niq.3 GeneCards:GC19M018417
HGNC:HGNC:17259 HPA:HPA040932 MIM:607284 neXtProt:NX_Q9Y4Z0
PharmGKB:PA134906569 InParanoid:Q9Y4Z0 PhylomeDB:Q9Y4Z0
ChiTaRS:LSM4 GenomeRNAi:25804 NextBio:47015 Bgee:Q9Y4Z0
CleanEx:HS_LSM4 Genevestigator:Q9Y4Z0 GermOnline:ENSG00000130520
Uniprot:Q9Y4Z0
Length = 139
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTE-EYVNGQLKNKYGDAFIR 73
P LK+ + P++V+L +G Y G L D +MNI + + +G + + +IR
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
Query: 74 GNNVLYI 80
G+ + Y+
Sbjct: 63 GSTIKYL 69
>MGI|MGI:1354692 [details] [associations]
symbol:Lsm4 "LSM4 homolog, U6 small nuclear RNA associated
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] MGI:MGI:1354692
INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920
SUPFAM:SSF50182 KO:K12623 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG000486 CTD:25804
OrthoDB:EOG4T784T InterPro:IPR027141 PANTHER:PTHR23338
EMBL:AJ249439 IPI:IPI00134784 RefSeq:NP_056631.2 UniGene:Mm.248188
ProteinModelPortal:Q9QXA5 SMR:Q9QXA5 STRING:Q9QXA5
PhosphoSite:Q9QXA5 PaxDb:Q9QXA5 PRIDE:Q9QXA5 GeneID:50783
KEGG:mmu:50783 InParanoid:Q9QXA5 NextBio:307741 Bgee:Q9QXA5
Genevestigator:Q9QXA5 GermOnline:ENSMUSG00000031848 Uniprot:Q9QXA5
Length = 137
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTE-EYVNGQLKNKYGDAFIR 73
P LK+ + P++V+L +G Y G L D +MNI + + +G + + +IR
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
Query: 74 GNNVLYI 80
G+ + Y+
Sbjct: 63 GSTIKYL 69
>TAIR|locus:2014480 [details] [associations]
symbol:LSM2 "AT1G03330" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR016654 PIRSF:PIRSF016394
INTERPRO:IPR001163 EMBL:CP002684 GO:GO:0005829 GO:GO:0003676
GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 KO:K12621
OMA:KLDNISC PANTHER:PTHR13829 EMBL:BT025569 IPI:IPI00543239
RefSeq:NP_563682.1 UniGene:At.42549 ProteinModelPortal:Q1H595
SMR:Q1H595 STRING:Q1H595 PaxDb:Q1H595 PRIDE:Q1H595
EnsemblPlants:AT1G03330.1 GeneID:839526 KEGG:ath:AT1G03330
TAIR:At1g03330 InParanoid:Q1H595 PhylomeDB:Q1H595
ProtClustDB:CLSN2687640 Genevestigator:Q1H595 Uniprot:Q1H595
Length = 93
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 18 FLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG--DAFIRGN 75
+ K + G+ V V+L + + RG L +D Y+NI +E T + + + FIRG+
Sbjct: 6 YFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
Query: 76 NVLYISTSK 84
V Y+ K
Sbjct: 66 VVRYVQLPK 74
>ZFIN|ZDB-GENE-040426-1652 [details] [associations]
symbol:lsm4 "LSM4 homolog, U6 small nuclear RNA
associated (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163
ZFIN:ZDB-GENE-040426-1652 InterPro:IPR010920 SUPFAM:SSF50182
KO:K12623 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG000486 CTD:25804
GeneTree:ENSGT00610000086173 HOGENOM:HOG000182713 OMA:GMQQQKQ
OrthoDB:EOG4T784T InterPro:IPR027141 PANTHER:PTHR23338
EMBL:BX936438 EMBL:BC059435 EMBL:BC062285 IPI:IPI00505813
RefSeq:NP_956990.1 UniGene:Dr.159006 STRING:Q6P6E4
Ensembl:ENSDART00000037824 GeneID:393669 KEGG:dre:393669
InParanoid:Q6P6E4 NextBio:20814675 Uniprot:Q6P6E4
Length = 143
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTE-EYVNGQLKNKYGDAFIR 73
P LK+ + P++V+L +G Y G L D +MNI + + +G + + +IR
Sbjct: 3 PLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIR 62
Query: 74 GNNVLYI 80
G+ + Y+
Sbjct: 63 GSTIKYL 69
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.133 0.375 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 91 91 0.00091 102 3 11 23 0.39 30
29 0.39 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 57
No. of states in DFA: 470 (50 KB)
Total size of DFA: 87 KB (2067 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 8.93u 0.12s 9.05t Elapsed: 00:00:01
Total cpu time: 8.93u 0.12s 9.05t Elapsed: 00:00:01
Start: Thu May 9 19:39:37 2013 End: Thu May 9 19:39:38 2013