BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034564
(91 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224098796|ref|XP_002311269.1| predicted protein [Populus trichocarpa]
gi|118483023|gb|ABK93423.1| unknown [Populus trichocarpa]
gi|222851089|gb|EEE88636.1| predicted protein [Populus trichocarpa]
Length = 91
Score = 187 bits (475), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91
GQLKNKYGDAFIRGNNVLYISTSKRTLADGA
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91
>gi|225434160|ref|XP_002278412.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Vitis
vinifera]
gi|296084324|emb|CBI24712.3| unnamed protein product [Vitis vinifera]
Length = 91
Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/91 (98%), Positives = 91/91 (100%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91
GQLKNKYGDAFIRGNNVLYISTSKRTLA+GA
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGA 91
>gi|224112373|ref|XP_002316168.1| predicted protein [Populus trichocarpa]
gi|118482915|gb|ABK93371.1| unknown [Populus trichocarpa]
gi|222865208|gb|EEF02339.1| predicted protein [Populus trichocarpa]
Length = 91
Score = 184 bits (467), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 89/91 (97%), Positives = 90/91 (98%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
MS+GGEKGS TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1 MSSGGEKGSTTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91
GQLKNKYGDAFIRGNNVLYISTSKRTLADGA
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91
>gi|255587821|ref|XP_002534408.1| small nuclear ribonucleoprotein f, putative [Ricinus communis]
gi|223525355|gb|EEF27977.1| small nuclear ribonucleoprotein f, putative [Ricinus communis]
Length = 91
Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/91 (97%), Positives = 90/91 (98%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
MS GGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1 MSGGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91
GQLKNKYGDAFIRGNNVLYIST+KRTLADGA
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTTKRTLADGA 91
>gi|449445280|ref|XP_004140401.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Cucumis
sativus]
gi|449498381|ref|XP_004160523.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Cucumis
sativus]
Length = 92
Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 87/91 (95%), Positives = 90/91 (98%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
MS GGEKGSA+TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1 MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91
GQLKNKYGDAFIRGNNVLYISTSKRTLA+G+
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 91
>gi|388506496|gb|AFK41314.1| unknown [Lotus japonicus]
Length = 90
Score = 177 bits (448), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/89 (95%), Positives = 87/89 (97%)
Query: 3 TGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQ 62
+G EKGS TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQ
Sbjct: 2 SGAEKGSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQ 61
Query: 63 LKNKYGDAFIRGNNVLYISTSKRTLADGA 91
LKNKYGDAFIRGNNVLYISTSKRTLA+GA
Sbjct: 62 LKNKYGDAFIRGNNVLYISTSKRTLAEGA 90
>gi|351721500|ref|NP_001237723.1| uncharacterized protein LOC100306112 [Glycine max]
gi|255627589|gb|ACU14139.1| unknown [Glycine max]
Length = 91
Score = 174 bits (441), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 87/91 (95%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
MS G+ GS TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1 MSGTGKAGSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91
GQLKNKYGDAFIRGNNVLYISTSKRTLA+GA
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGA 91
>gi|357474665|ref|XP_003607617.1| U6 snRNA-associated Sm-like protein LSm6 [Medicago truncatula]
gi|355508672|gb|AES89814.1| U6 snRNA-associated Sm-like protein LSm6 [Medicago truncatula]
gi|388502230|gb|AFK39181.1| unknown [Medicago truncatula]
Length = 91
Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 84/91 (92%), Positives = 86/91 (94%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
MS + GS TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1 MSGTEKSGSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91
GQLKNKYGDAFIRGNNVLYISTSKRTLA+GA
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGA 91
>gi|356568356|ref|XP_003552377.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Glycine
max]
Length = 91
Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 84/91 (92%), Positives = 86/91 (94%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
MS + GS TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1 MSGTEKAGSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91
GQLKNKYGDAFIRGNNVLYISTSKRTLA+GA
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGA 91
>gi|297817284|ref|XP_002876525.1| hypothetical protein ARALYDRAFT_486445 [Arabidopsis lyrata subsp.
lyrata]
gi|297322363|gb|EFH52784.1| hypothetical protein ARALYDRAFT_486445 [Arabidopsis lyrata subsp.
lyrata]
Length = 91
Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 83/91 (91%), Positives = 84/91 (92%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
MS GEK S TTKTPADFLKSIRGRPVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVN
Sbjct: 1 MSGVGEKVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVN 60
Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91
GQLKNKYGDAFIRGNNVLYIST K T+ADGA
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTVKMTVADGA 91
>gi|297824373|ref|XP_002880069.1| hypothetical protein ARALYDRAFT_903785 [Arabidopsis lyrata subsp.
lyrata]
gi|297325908|gb|EFH56328.1| hypothetical protein ARALYDRAFT_903785 [Arabidopsis lyrata subsp.
lyrata]
Length = 91
Score = 168 bits (425), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 81/91 (89%), Positives = 85/91 (93%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
MS GEK S TTKTPADFLKSIRG+PVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVN
Sbjct: 1 MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVN 60
Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91
GQLKNKYGDAF+RGNNVLYIST+K TL+DGA
Sbjct: 61 GQLKNKYGDAFVRGNNVLYISTTKGTLSDGA 91
>gi|15224366|ref|NP_181909.1| U6 snRNA-associated Sm-like protein LSm6 [Arabidopsis thaliana]
gi|145331121|ref|NP_001078052.1| U6 snRNA-associated Sm-like protein LSm6 [Arabidopsis thaliana]
gi|2281089|gb|AAB64025.1| putative small nuclear ribonucleoprotein polypeptide F
[Arabidopsis thaliana]
gi|30725284|gb|AAP37664.1| At2g43810 [Arabidopsis thaliana]
gi|110735708|dbj|BAE99834.1| putative small nuclear ribonucleoprotein polypeptide F
[Arabidopsis thaliana]
gi|222423635|dbj|BAH19786.1| AT2G43810 [Arabidopsis thaliana]
gi|330255235|gb|AEC10329.1| U6 snRNA-associated Sm-like protein LSm6 [Arabidopsis thaliana]
gi|330255236|gb|AEC10330.1| U6 snRNA-associated Sm-like protein LSm6 [Arabidopsis thaliana]
Length = 91
Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/91 (87%), Positives = 84/91 (92%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
MS GEK S TTKTPADFLKSIRG+PVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVN
Sbjct: 1 MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVN 60
Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91
GQLKN YGDAF+RGNNVLYIST+K TL+DGA
Sbjct: 61 GQLKNTYGDAFVRGNNVLYISTTKGTLSDGA 91
>gi|242075544|ref|XP_002447708.1| hypothetical protein SORBIDRAFT_06g013920 [Sorghum bicolor]
gi|241938891|gb|EES12036.1| hypothetical protein SORBIDRAFT_06g013920 [Sorghum bicolor]
Length = 97
Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/97 (85%), Positives = 84/97 (86%), Gaps = 6/97 (6%)
Query: 1 MSTGGE------KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQ 54
MSTGG G KTP+DFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQ
Sbjct: 1 MSTGGADKPGSGSGGGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQ 60
Query: 55 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91
TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL DGA
Sbjct: 61 TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLTDGA 97
>gi|212722680|ref|NP_001131392.1| uncharacterized protein LOC100192719 [Zea mays]
gi|194691404|gb|ACF79786.1| unknown [Zea mays]
gi|195605878|gb|ACG24769.1| small nuclear ribonucleoprotein F [Zea mays]
gi|413918138|gb|AFW58070.1| Small nuclear ribonucleoprotein F [Zea mays]
Length = 95
Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/95 (86%), Positives = 85/95 (89%), Gaps = 4/95 (4%)
Query: 1 MSTGGE----KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTE 56
MS+GG G KTP+DFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTE
Sbjct: 1 MSSGGADKPGSGGGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTE 60
Query: 57 EYVNGQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91
EYVNGQLKNKYGDAFIRGNNVLYIST+KRTLADGA
Sbjct: 61 EYVNGQLKNKYGDAFIRGNNVLYISTTKRTLADGA 95
>gi|222424888|dbj|BAH20395.1| AT2G43810 [Arabidopsis thaliana]
Length = 91
Score = 164 bits (415), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 79/91 (86%), Positives = 83/91 (91%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
MS GEK S TTKTPADFLKSIRG+PVVVKLNSGVDYRGIL CLDGYMNIAMEQ EEYVN
Sbjct: 1 MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQAEEYVN 60
Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91
GQLKN YGDAF+RGNNVLYIST+K TL+DGA
Sbjct: 61 GQLKNTYGDAFVRGNNVLYISTTKGTLSDGA 91
>gi|21554327|gb|AAM63434.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
Length = 91
Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/91 (87%), Positives = 82/91 (90%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
MS GEK S TTKTPADFLKSIRGRPV+VKLNSGVDYRG L CLDGYMNIAMEQTEEYVN
Sbjct: 1 MSGVGEKVSGTTKTPADFLKSIRGRPVIVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVN 60
Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91
GQLKNKYGDAFIRGNNVLYIST T+ADGA
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTVNMTVADGA 91
>gi|116792892|gb|ABK26542.1| unknown [Picea sitchensis]
Length = 91
Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/81 (95%), Positives = 79/81 (97%)
Query: 11 TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
+ KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA
Sbjct: 11 SAKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
Query: 71 FIRGNNVLYISTSKRTLADGA 91
FIRGNNVLYISTSKRTL +GA
Sbjct: 71 FIRGNNVLYISTSKRTLGEGA 91
>gi|48716974|dbj|BAD23667.1| putative Sm protein F [Oryza sativa Japonica Group]
gi|215765012|dbj|BAG86709.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222622927|gb|EEE57059.1| hypothetical protein OsJ_06869 [Oryza sativa Japonica Group]
Length = 101
Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/80 (96%), Positives = 78/80 (97%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
KTP+DFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF
Sbjct: 22 VKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 81
Query: 72 IRGNNVLYISTSKRTLADGA 91
IRGNNVLYISTSKRTL DGA
Sbjct: 82 IRGNNVLYISTSKRTLTDGA 101
>gi|218190824|gb|EEC73251.1| hypothetical protein OsI_07364 [Oryza sativa Indica Group]
Length = 97
Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/80 (96%), Positives = 78/80 (97%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
KTP+DFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF
Sbjct: 18 VKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 77
Query: 72 IRGNNVLYISTSKRTLADGA 91
IRGNNVLYISTSKRTL DGA
Sbjct: 78 IRGNNVLYISTSKRTLTDGA 97
>gi|115446301|ref|NP_001046930.1| Os02g0510100 [Oryza sativa Japonica Group]
gi|113536461|dbj|BAF08844.1| Os02g0510100, partial [Oryza sativa Japonica Group]
Length = 96
Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/80 (96%), Positives = 78/80 (97%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
KTP+DFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF
Sbjct: 17 VKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 76
Query: 72 IRGNNVLYISTSKRTLADGA 91
IRGNNVLYISTSKRTL DGA
Sbjct: 77 IRGNNVLYISTSKRTLTDGA 96
>gi|15232179|ref|NP_191540.1| U6 snRNA-associated Sm-like protein LSm6 [Arabidopsis thaliana]
gi|7019675|emb|CAB75800.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
gi|27754440|gb|AAO22668.1| putative U6 snRNA-associated Sm protein [Arabidopsis thaliana]
gi|28394039|gb|AAO42427.1| putative U6 snRNA-associated Sm protein [Arabidopsis thaliana]
gi|332646450|gb|AEE79971.1| U6 snRNA-associated Sm-like protein LSm6 [Arabidopsis thaliana]
Length = 91
Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 80/91 (87%), Positives = 81/91 (89%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
MS EK S TTKTPADFLKSIRGRPVVVKLNSGVDYRG L CLDGYMNIAMEQTEEYVN
Sbjct: 1 MSGVEEKVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVN 60
Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91
GQLKNKYGDAFIRGNNVLYIST T+ADGA
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTVNMTVADGA 91
>gi|115458068|ref|NP_001052634.1| Os04g0388900 [Oryza sativa Japonica Group]
gi|113564205|dbj|BAF14548.1| Os04g0388900 [Oryza sativa Japonica Group]
gi|215693219|dbj|BAG88601.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218194749|gb|EEC77176.1| hypothetical protein OsI_15663 [Oryza sativa Indica Group]
gi|222628763|gb|EEE60895.1| hypothetical protein OsJ_14579 [Oryza sativa Japonica Group]
Length = 97
Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/79 (96%), Positives = 77/79 (97%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
KTP+DFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI
Sbjct: 19 KTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 78
Query: 73 RGNNVLYISTSKRTLADGA 91
RGNNVLYISTSKRTL D A
Sbjct: 79 RGNNVLYISTSKRTLTDDA 97
>gi|116782342|gb|ABK22473.1| unknown [Picea sitchensis]
Length = 91
Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/79 (96%), Positives = 78/79 (98%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI
Sbjct: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
Query: 73 RGNNVLYISTSKRTLADGA 91
RGNNVLYISTSKR+L +GA
Sbjct: 73 RGNNVLYISTSKRSLGEGA 91
>gi|326504448|dbj|BAJ91056.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511968|dbj|BAJ95965.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326517080|dbj|BAJ99906.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 99
Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/80 (95%), Positives = 77/80 (96%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
KTP+DFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF
Sbjct: 20 VKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 79
Query: 72 IRGNNVLYISTSKRTLADGA 91
IRGNNVLYISTSKR L DGA
Sbjct: 80 IRGNNVLYISTSKRPLTDGA 99
>gi|357149171|ref|XP_003575024.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Brachypodium distachyon]
Length = 98
Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/80 (93%), Positives = 78/80 (97%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
KTP+DFLKSIRGRPVVVKLNSGVDYRG+LACLDGYMNIAMEQTEEYVNGQLKNKYGDAF
Sbjct: 19 VKTPSDFLKSIRGRPVVVKLNSGVDYRGVLACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 78
Query: 72 IRGNNVLYISTSKRTLADGA 91
IRGNNVLYISTSKRT+ DGA
Sbjct: 79 IRGNNVLYISTSKRTVEDGA 98
>gi|168005297|ref|XP_001755347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693475|gb|EDQ79827.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 91
Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/81 (91%), Positives = 78/81 (96%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
+ + KTPADFLKSIRGRPVVVKLNSGVDYRG+LACLDGYMNIAMEQTEEYVNGQLKNKYG
Sbjct: 11 TGSAKTPADFLKSIRGRPVVVKLNSGVDYRGVLACLDGYMNIAMEQTEEYVNGQLKNKYG 70
Query: 69 DAFIRGNNVLYISTSKRTLAD 89
DAFIRGNNVLYIST+KRTL D
Sbjct: 71 DAFIRGNNVLYISTTKRTLGD 91
>gi|357163084|ref|XP_003579620.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Brachypodium distachyon]
Length = 97
Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 74/80 (92%), Positives = 77/80 (96%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
KTP+DFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF
Sbjct: 18 VKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 77
Query: 72 IRGNNVLYISTSKRTLADGA 91
IRGNNVLYISTSK+ + DGA
Sbjct: 78 IRGNNVLYISTSKQAVTDGA 97
>gi|168041946|ref|XP_001773451.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675327|gb|EDQ61824.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 91
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/81 (88%), Positives = 76/81 (93%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
+ + KTP DFLKSI+GRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG
Sbjct: 11 TGSAKTPNDFLKSIKGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 70
Query: 69 DAFIRGNNVLYISTSKRTLAD 89
DAFIRGNNVLYIST+K TL D
Sbjct: 71 DAFIRGNNVLYISTTKMTLGD 91
>gi|302798158|ref|XP_002980839.1| hypothetical protein SELMODRAFT_268399 [Selaginella
moellendorffii]
gi|302815369|ref|XP_002989366.1| hypothetical protein SELMODRAFT_235757 [Selaginella
moellendorffii]
gi|300142944|gb|EFJ09640.1| hypothetical protein SELMODRAFT_235757 [Selaginella
moellendorffii]
gi|300151378|gb|EFJ18024.1| hypothetical protein SELMODRAFT_268399 [Selaginella
moellendorffii]
Length = 87
Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/86 (82%), Positives = 79/86 (91%)
Query: 3 TGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQ 62
+G G+ + KTP DFL+SI+GRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQ
Sbjct: 2 SGSGIGAGSAKTPTDFLRSIKGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQ 61
Query: 63 LKNKYGDAFIRGNNVLYISTSKRTLA 88
LKNKYGDAFIRGNNVLYISTSK+ ++
Sbjct: 62 LKNKYGDAFIRGNNVLYISTSKKVIS 87
>gi|255078316|ref|XP_002502738.1| predicted protein [Micromonas sp. RCC299]
gi|226518004|gb|ACO63996.1| predicted protein [Micromonas sp. RCC299]
Length = 86
Score = 151 bits (381), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/84 (85%), Positives = 75/84 (89%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
MS + KTPADFLKSIRG+PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1 MSDDAAPDTGAAKTPADFLKSIRGKPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
Query: 61 GQLKNKYGDAFIRGNNVLYISTSK 84
GQLKNKYGDAFIRGNNVLYIST+K
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTAK 84
>gi|307110699|gb|EFN58935.1| hypothetical protein CHLNCDRAFT_34269 [Chlorella variabilis]
Length = 85
Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/85 (84%), Positives = 77/85 (90%), Gaps = 1/85 (1%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
M+ GGE S + KTPADFLKSI+G+PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1 MADGGEAPS-SAKTPADFLKSIKGKPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 59
Query: 61 GQLKNKYGDAFIRGNNVLYISTSKR 85
GQLKNKYGD FIRGNNVLYIST +
Sbjct: 60 GQLKNKYGDCFIRGNNVLYISTVRH 84
>gi|384247792|gb|EIE21278.1| isoform CRA_b [Coccomyxa subellipsoidea C-169]
Length = 84
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/76 (90%), Positives = 72/76 (94%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S + KTPADFLKSI+G+PVVVKLNSGVDYRGILACLDGYMNIAME TEEYVNGQLKNKYG
Sbjct: 8 SQSAKTPADFLKSIKGKPVVVKLNSGVDYRGILACLDGYMNIAMESTEEYVNGQLKNKYG 67
Query: 69 DAFIRGNNVLYISTSK 84
DAFIRGNNVLYIST K
Sbjct: 68 DAFIRGNNVLYISTVK 83
>gi|405968315|gb|EKC33396.1| Nucleolar protein 6 [Crassostrea gigas]
Length = 1150
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 66/80 (82%), Positives = 72/80 (90%)
Query: 6 EKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 65
E + +TP++FLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKN
Sbjct: 1069 ESAMSRKQTPSEFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKN 1128
Query: 66 KYGDAFIRGNNVLYISTSKR 85
KYGDAFIRGNNVLYIST KR
Sbjct: 1129 KYGDAFIRGNNVLYISTQKR 1148
>gi|403272388|ref|XP_003928047.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Saimiri
boliviensis boliviensis]
Length = 114
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/81 (83%), Positives = 73/81 (90%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK 66
K S +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNK
Sbjct: 34 KMSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNK 93
Query: 67 YGDAFIRGNNVLYISTSKRTL 87
YGDAFIRGNNVLYIST KR +
Sbjct: 94 YGDAFIRGNNVLYISTQKRRM 114
>gi|387914462|gb|AFK10840.1| U6 snRNA-associated Sm-like protein LSm6 [Callorhinchus milii]
Length = 80
Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/79 (86%), Positives = 72/79 (91%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 61
Query: 69 DAFIRGNNVLYISTSKRTL 87
DAFIRGNNVLYIST KR L
Sbjct: 62 DAFIRGNNVLYISTQKRRL 80
>gi|355700155|gb|AES01358.1| LSM6-like protein, U6 small nuclear RNA associated [Mustela
putorius furo]
Length = 86
Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/79 (86%), Positives = 72/79 (91%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK 66
K S +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNK
Sbjct: 7 KMSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNK 66
Query: 67 YGDAFIRGNNVLYISTSKR 85
YGDAFIRGNNVLYIST KR
Sbjct: 67 YGDAFIRGNNVLYISTQKR 85
>gi|5901998|ref|NP_009011.1| U6 snRNA-associated Sm-like protein LSm6 [Homo sapiens]
gi|113865835|ref|NP_084421.1| U6 snRNA-associated Sm-like protein LSm6 [Mus musculus]
gi|148234781|ref|NP_001087318.1| Sm protein F [Xenopus laevis]
gi|167583548|ref|NP_001107991.1| U6 snRNA-associated Sm-like protein LSm6 [Bos taurus]
gi|186910275|ref|NP_001119557.1| U6 snRNA-associated Sm-like protein LSm6 [Rattus norvegicus]
gi|284172395|ref|NP_001165068.1| Sm protein F [Xenopus (Silurana) tropicalis]
gi|300797601|ref|NP_001177933.1| U6 snRNA-associated Sm-like protein LSm6 [Mus musculus]
gi|350536543|ref|NP_001232484.1| putative LSM6 homolog U6 small nuclear RNA associated
[Taeniopygia guttata]
gi|388454641|ref|NP_001253894.1| U6 snRNA-associated Sm-like protein LSm6 [Macaca mulatta]
gi|118089868|ref|XP_420431.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 2
[Gallus gallus]
gi|149637763|ref|XP_001510547.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Ornithorhynchus anatinus]
gi|291401158|ref|XP_002716966.1| PREDICTED: Sm protein F [Oryctolagus cuniculus]
gi|293352714|ref|XP_002728048.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Rattus
norvegicus]
gi|296195455|ref|XP_002745354.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like isoform
1 [Callithrix jacchus]
gi|297674437|ref|XP_002815234.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Pongo
abelii]
gi|301761728|ref|XP_002916283.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like isoform
1 [Ailuropoda melanoleuca]
gi|301761730|ref|XP_002916284.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like isoform
2 [Ailuropoda melanoleuca]
gi|326918386|ref|XP_003205470.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like
[Meleagris gallopavo]
gi|327273948|ref|XP_003221741.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like [Anolis
carolinensis]
gi|332217354|ref|XP_003257824.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 1
[Nomascus leucogenys]
gi|332217356|ref|XP_003257825.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 2
[Nomascus leucogenys]
gi|332217358|ref|XP_003257826.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 3
[Nomascus leucogenys]
gi|332820272|ref|XP_003310523.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 1
[Pan troglodytes]
gi|332820274|ref|XP_003339112.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Pan
troglodytes]
gi|332820276|ref|XP_003310524.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 2
[Pan troglodytes]
gi|332820278|ref|XP_003310526.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 4
[Pan troglodytes]
gi|332820280|ref|XP_003310527.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 5
[Pan troglodytes]
gi|335293789|ref|XP_003357054.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Sus
scrofa]
gi|338722510|ref|XP_003364554.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like [Equus
caballus]
gi|344291754|ref|XP_003417595.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Loxodonta africana]
gi|345781166|ref|XP_855162.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 2
[Canis lupus familiaris]
gi|345781168|ref|XP_003432092.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 1
[Canis lupus familiaris]
gi|348582250|ref|XP_003476889.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Cavia
porcellus]
gi|354477192|ref|XP_003500806.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Cricetulus griseus]
gi|390460377|ref|XP_003732476.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like isoform
2 [Callithrix jacchus]
gi|392332759|ref|XP_003752686.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Rattus
norvegicus]
gi|395542575|ref|XP_003773202.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Sarcophilus
harrisii]
gi|395834523|ref|XP_003790249.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Otolemur
garnettii]
gi|397489777|ref|XP_003815894.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Pan
paniscus]
gi|402870580|ref|XP_003899290.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 1
[Papio anubis]
gi|402870582|ref|XP_003899291.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 2
[Papio anubis]
gi|410038770|ref|XP_003950473.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Pan
troglodytes]
gi|410038772|ref|XP_003950474.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Pan
troglodytes]
gi|410956783|ref|XP_003985017.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Felis catus]
gi|426246981|ref|XP_004017265.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Ovis aries]
gi|426345621|ref|XP_004040503.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 1
[Gorilla gorilla gorilla]
gi|426345623|ref|XP_004040504.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 2
[Gorilla gorilla gorilla]
gi|426345625|ref|XP_004040505.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 3
[Gorilla gorilla gorilla]
gi|426345627|ref|XP_004040506.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 4
[Gorilla gorilla gorilla]
gi|426345629|ref|XP_004040507.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 5
[Gorilla gorilla gorilla]
gi|426345631|ref|XP_004040508.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 6
[Gorilla gorilla gorilla]
gi|441619228|ref|XP_004088560.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Nomascus
leucogenys]
gi|61227727|sp|P62312.1|LSM6_HUMAN RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|61227728|sp|P62313.1|LSM6_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|5919153|gb|AAD56230.1|AF182292_1 U6 snRNA-associated Sm-like protein LSm6 [Homo sapiens]
gi|5262862|emb|CAB45869.1| Lsm6 protein [Homo sapiens]
gi|12859166|dbj|BAB31555.1| unnamed protein product [Mus musculus]
gi|16359118|gb|AAH16026.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|20987896|gb|AAH30427.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|26347205|dbj|BAC37251.1| unnamed protein product [Mus musculus]
gi|51593502|gb|AAH78551.1| MGC85411 protein [Xenopus laevis]
gi|63995242|gb|AAY41032.1| unknown [Homo sapiens]
gi|67514294|gb|AAH98230.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|68534470|gb|AAH99484.1| Lsm6 protein [Mus musculus]
gi|74179952|dbj|BAE36530.1| unnamed protein product [Mus musculus]
gi|74196623|dbj|BAE34418.1| unnamed protein product [Mus musculus]
gi|74202626|dbj|BAE24870.1| unnamed protein product [Mus musculus]
gi|109939818|gb|AAI18349.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Bos taurus]
gi|110645766|gb|AAI18890.1| MGC147213 protein [Xenopus (Silurana) tropicalis]
gi|119226360|gb|AAI28976.1| MGC85411 protein [Xenopus laevis]
gi|119625434|gb|EAX05029.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|119625435|gb|EAX05030.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|119625436|gb|EAX05031.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|123983026|gb|ABM83254.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[synthetic construct]
gi|148678915|gb|EDL10862.1| mCG7981, isoform CRA_a [Mus musculus]
gi|148678917|gb|EDL10864.1| mCG7981, isoform CRA_a [Mus musculus]
gi|149037959|gb|EDL92319.1| rCG51654, isoform CRA_a [Rattus norvegicus]
gi|149037960|gb|EDL92320.1| rCG51654, isoform CRA_a [Rattus norvegicus]
gi|149037961|gb|EDL92321.1| rCG51654, isoform CRA_a [Rattus norvegicus]
gi|149058701|gb|EDM09858.1| rCG63582, isoform CRA_b [Rattus norvegicus]
gi|157928024|gb|ABW03308.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[synthetic construct]
gi|163916395|gb|AAI57145.1| MGC147213 protein [Xenopus (Silurana) tropicalis]
gi|189053256|dbj|BAG35062.1| unnamed protein product [Homo sapiens]
gi|197127464|gb|ACH43962.1| putative LSM6 homolog U6 small nuclear RNA associated
[Taeniopygia guttata]
gi|261860094|dbj|BAI46569.1| U6 snRNA-associated Sm-like protein LSm6 [synthetic construct]
gi|296478782|tpg|DAA20897.1| TPA: Sm protein F [Bos taurus]
gi|344244120|gb|EGW00224.1| U6 snRNA-associated Sm-like protein LSm6 [Cricetulus griseus]
gi|351714530|gb|EHB17449.1| U6 snRNA-associated Sm-like protein LSm6 [Heterocephalus glaber]
gi|355687640|gb|EHH26224.1| hypothetical protein EGK_16139 [Macaca mulatta]
gi|355762049|gb|EHH61876.1| hypothetical protein EGM_20027 [Macaca fascicularis]
gi|380783335|gb|AFE63543.1| U6 snRNA-associated Sm-like protein LSm6 [Macaca mulatta]
gi|384945050|gb|AFI36130.1| U6 snRNA-associated Sm-like protein LSm6 [Macaca mulatta]
gi|410287906|gb|JAA22553.1| LSM6 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410287908|gb|JAA22554.1| LSM6 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410349693|gb|JAA41450.1| LSM6 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|417395471|gb|JAA44792.1| Putative small nuclear ribonucleoprotein f [Desmodus rotundus]
gi|431918291|gb|ELK17518.1| U6 snRNA-associated Sm-like protein LSm6 [Pteropus alecto]
gi|449271295|gb|EMC81755.1| U6 snRNA-associated Sm-like protein LSm6 [Columba livia]
Length = 80
Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 67/79 (84%), Positives = 72/79 (91%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 61
Query: 69 DAFIRGNNVLYISTSKRTL 87
DAFIRGNNVLYIST KR +
Sbjct: 62 DAFIRGNNVLYISTQKRRM 80
>gi|72032500|ref|XP_799246.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Strongylocentrotus purpuratus]
Length = 83
Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 70/80 (87%), Positives = 74/80 (92%), Gaps = 3/80 (3%)
Query: 9 SATT---KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 65
SATT +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKN
Sbjct: 3 SATTARKQTPSDFLKLIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKN 62
Query: 66 KYGDAFIRGNNVLYISTSKR 85
KYGDAFIRGNNVLYIST KR
Sbjct: 63 KYGDAFIRGNNVLYISTQKR 82
>gi|424513391|emb|CCO66013.1| U6 snRNA-associated Sm-like protein LSm6 [Bathycoccus prasinos]
Length = 82
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/76 (88%), Positives = 72/76 (94%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
++ +KTPADFLKSIRG+ VVVKLNSGVDYRGILACLDGYMNIAME TEEYVNGQLKNKYG
Sbjct: 7 TSASKTPADFLKSIRGKRVVVKLNSGVDYRGILACLDGYMNIAMEHTEEYVNGQLKNKYG 66
Query: 69 DAFIRGNNVLYISTSK 84
DAFIRGNNVLYIS +K
Sbjct: 67 DAFIRGNNVLYISLAK 82
>gi|50344808|ref|NP_001002077.1| U6 snRNA-associated Sm-like protein LSm6 [Danio rerio]
gi|48735113|gb|AAH72549.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Danio rerio]
gi|182888802|gb|AAI64231.1| Lsm6 protein [Danio rerio]
gi|221219176|gb|ACM08249.1| U6 snRNA-associated Sm-like protein LSm6 [Salmo salar]
gi|221220666|gb|ACM08994.1| U6 snRNA-associated Sm-like protein LSm6 [Salmo salar]
gi|221220672|gb|ACM08997.1| U6 snRNA-associated Sm-like protein LSm6 [Salmo salar]
gi|221221694|gb|ACM09508.1| U6 snRNA-associated Sm-like protein LSm6 [Salmo salar]
gi|223646340|gb|ACN09928.1| U6 snRNA-associated Sm-like protein LSm6 [Salmo salar]
gi|223672187|gb|ACN12275.1| U6 snRNA-associated Sm-like protein LSm6 [Salmo salar]
gi|225716604|gb|ACO14148.1| U6 snRNA-associated Sm-like protein LSm6 [Esox lucius]
Length = 80
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/79 (83%), Positives = 72/79 (91%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAVEQTEEYVNGQLKNKYG 61
Query: 69 DAFIRGNNVLYISTSKRTL 87
DAF+RGNNVLYIST KR +
Sbjct: 62 DAFLRGNNVLYISTQKRKM 80
>gi|291225628|ref|XP_002732802.1| PREDICTED: Sm protein F-like [Saccoglossus kowalevskii]
Length = 79
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/73 (90%), Positives = 70/73 (95%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYGDAFI
Sbjct: 5 QTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFI 64
Query: 73 RGNNVLYISTSKR 85
RGNNVLYIST KR
Sbjct: 65 RGNNVLYISTQKR 77
>gi|432847198|ref|XP_004065979.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Oryzias
latipes]
Length = 80
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/79 (83%), Positives = 72/79 (91%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2 SMRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAIEQTEEYVNGQLKNKYG 61
Query: 69 DAFIRGNNVLYISTSKRTL 87
DAF+RGNNVLYIST KR +
Sbjct: 62 DAFLRGNNVLYISTQKRKV 80
>gi|303283108|ref|XP_003060845.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457196|gb|EEH54495.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 85
Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/76 (86%), Positives = 71/76 (93%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
+ KTPADFLKSI+G+ VVVKLNSGVDYRG+LACLDGYMNIAME+TEEYVNGQLKNKYG
Sbjct: 8 AGAAKTPADFLKSIKGKQVVVKLNSGVDYRGVLACLDGYMNIAMEETEEYVNGQLKNKYG 67
Query: 69 DAFIRGNNVLYISTSK 84
DAFIRGNNVLYIST K
Sbjct: 68 DAFIRGNNVLYISTVK 83
>gi|348524416|ref|XP_003449719.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Oreochromis niloticus]
gi|410917980|ref|XP_003972464.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Takifugu rubripes]
gi|47217355|emb|CAG11060.1| unnamed protein product [Tetraodon nigroviridis]
Length = 80
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/79 (83%), Positives = 72/79 (91%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAIEQTEEYVNGQLKNKYG 61
Query: 69 DAFIRGNNVLYISTSKRTL 87
DAF+RGNNVLYIST KR +
Sbjct: 62 DAFLRGNNVLYISTQKRKV 80
>gi|229367210|gb|ACQ58585.1| U6 snRNA-associated Sm-like protein LSm6 [Anoplopoma fimbria]
Length = 80
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/77 (85%), Positives = 71/77 (92%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAIEQTEEYVNGQLKNKYG 61
Query: 69 DAFIRGNNVLYISTSKR 85
DAF+RGNNVLYIST KR
Sbjct: 62 DAFLRGNNVLYISTQKR 78
>gi|405968751|gb|EKC33791.1| U6 snRNA-associated Sm-like protein LSm6 [Crassostrea gigas]
Length = 79
Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 65/73 (89%), Positives = 70/73 (95%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+TP++FLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYGDAFI
Sbjct: 5 QTPSEFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFI 64
Query: 73 RGNNVLYISTSKR 85
RGNNVLYIST KR
Sbjct: 65 RGNNVLYISTQKR 77
>gi|260791583|ref|XP_002590808.1| hypothetical protein BRAFLDRAFT_125735 [Branchiostoma floridae]
gi|229276005|gb|EEN46819.1| hypothetical protein BRAFLDRAFT_125735 [Branchiostoma floridae]
Length = 81
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 65/72 (90%), Positives = 69/72 (95%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYGDAFI
Sbjct: 5 QTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFI 64
Query: 73 RGNNVLYISTSK 84
RGNNVLYIST K
Sbjct: 65 RGNNVLYISTQK 76
>gi|226372462|gb|ACO51856.1| U6 snRNA-associated Sm-like protein LSm6 [Rana catesbeiana]
Length = 80
Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 65/79 (82%), Positives = 71/79 (89%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S +TP+DF K I GRPVVV+LNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2 SLRKQTPSDFWKQIIGRPVVVELNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 61
Query: 69 DAFIRGNNVLYISTSKRTL 87
DAFIRGNNVLYIST KR +
Sbjct: 62 DAFIRGNNVLYISTQKRRM 80
>gi|413918137|gb|AFW58069.1| hypothetical protein ZEAMMB73_640240 [Zea mays]
Length = 177
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/80 (85%), Positives = 70/80 (87%), Gaps = 4/80 (5%)
Query: 1 MSTGGE----KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTE 56
MS+GG G KTP+DFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTE
Sbjct: 1 MSSGGADKPGSGGGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTE 60
Query: 57 EYVNGQLKNKYGDAFIRGNN 76
EYVNGQLKNKYGDAFIRGNN
Sbjct: 61 EYVNGQLKNKYGDAFIRGNN 80
>gi|221220122|gb|ACM08722.1| U6 snRNA-associated Sm-like protein LSm6 [Salmo salar]
Length = 80
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/79 (82%), Positives = 71/79 (89%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAVEQTEEYVNGQLKNKYG 61
Query: 69 DAFIRGNNVLYISTSKRTL 87
DAF+RGN VLYIST KR +
Sbjct: 62 DAFLRGNTVLYISTQKRKM 80
>gi|225716748|gb|ACO14220.1| U6 snRNA-associated Sm-like protein LSm6 [Esox lucius]
Length = 80
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/79 (81%), Positives = 72/79 (91%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYM+IA+EQTEEYVNGQLKNKYG
Sbjct: 2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMSIAVEQTEEYVNGQLKNKYG 61
Query: 69 DAFIRGNNVLYISTSKRTL 87
DAF+RGNNVLY+ST KR +
Sbjct: 62 DAFLRGNNVLYVSTQKRKM 80
>gi|346470245|gb|AEO34967.1| hypothetical protein [Amblyomma maculatum]
gi|427785925|gb|JAA58414.1| Putative small nuclear ribonucleoprotein f [Rhipicephalus
pulchellus]
gi|442749057|gb|JAA66688.1| Putative small nuclear ribonucleoprotein f [Ixodes ricinus]
Length = 79
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/75 (85%), Positives = 71/75 (94%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+TP++FLK I GRPVVVKLNSG+DYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYGDAFI
Sbjct: 5 QTPSEFLKQIIGRPVVVKLNSGLDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFI 64
Query: 73 RGNNVLYISTSKRTL 87
RGNNVLYIST KR +
Sbjct: 65 RGNNVLYISTQKRRI 79
>gi|440889992|gb|ELR44741.1| U6 snRNA-associated Sm-like protein LSm6 [Bos grunniens mutus]
Length = 80
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/79 (82%), Positives = 71/79 (89%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKN YG
Sbjct: 2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNTYG 61
Query: 69 DAFIRGNNVLYISTSKRTL 87
DAFI+GNNVLYIST KR +
Sbjct: 62 DAFIQGNNVLYISTQKRRM 80
>gi|198429171|ref|XP_002120650.1| PREDICTED: similar to conserved hypothetical protein [Ciona
intestinalis]
Length = 82
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 69/73 (94%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+TP++FLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYGDAFI
Sbjct: 5 QTPSEFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFI 64
Query: 73 RGNNVLYISTSKR 85
RGNNV YIST KR
Sbjct: 65 RGNNVFYISTQKR 77
>gi|296490659|tpg|DAA32772.1| TPA: Sm protein F-like [Bos taurus]
Length = 80
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/79 (81%), Positives = 70/79 (88%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNI +EQTEEYVNGQLKN YG
Sbjct: 2 SLWKQTPSDFLKQITGRPVVVKLNSGVDYRGVLACLDGYMNIVLEQTEEYVNGQLKNTYG 61
Query: 69 DAFIRGNNVLYISTSKRTL 87
DAFI+GNNVLYIST KR +
Sbjct: 62 DAFIQGNNVLYISTQKRRM 80
>gi|196014390|ref|XP_002117054.1| conserved hypothetical protein [Trichoplax adhaerens]
gi|190580276|gb|EDV20360.1| conserved hypothetical protein [Trichoplax adhaerens]
Length = 79
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/75 (84%), Positives = 70/75 (93%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+TP++FLK++ GRPVVVKLNSGVDYRGIL CLDGYMNIA+EQTEEY+NGQLKNKYGDAFI
Sbjct: 5 QTPSEFLKNVIGRPVVVKLNSGVDYRGILTCLDGYMNIALEQTEEYINGQLKNKYGDAFI 64
Query: 73 RGNNVLYISTSKRTL 87
RGNNV YIST KR L
Sbjct: 65 RGNNVFYISTQKRRL 79
>gi|156358627|ref|XP_001624618.1| predicted protein [Nematostella vectensis]
gi|156211409|gb|EDO32518.1| predicted protein [Nematostella vectensis]
Length = 80
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 64/72 (88%), Positives = 69/72 (95%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+TP+DFLK I GRPVVVKLN+GVDYRG+LACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI
Sbjct: 5 QTPSDFLKLIIGRPVVVKLNNGVDYRGVLACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 64
Query: 73 RGNNVLYISTSK 84
RGNNVLYIST +
Sbjct: 65 RGNNVLYISTQR 76
>gi|159475096|ref|XP_001695659.1| U6 small ribonucleoprotein F [Chlamydomonas reinhardtii]
gi|158275670|gb|EDP01446.1| U6 small ribonucleoprotein F [Chlamydomonas reinhardtii]
Length = 89
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 63/78 (80%), Positives = 72/78 (92%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
+ +KTPA+FLK+I+G+ V+VKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG
Sbjct: 10 TGVSKTPAEFLKAIKGKAVLVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 69
Query: 69 DAFIRGNNVLYISTSKRT 86
DAFIRGNNVLYIS ++
Sbjct: 70 DAFIRGNNVLYISAINKS 87
>gi|340381514|ref|XP_003389266.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like
[Amphimedon queenslandica]
Length = 80
Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 64/72 (88%), Positives = 68/72 (94%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+TP DFLK I GRPVVVKLNSGVDYRGILACLDGYMNIA+EQTEEY+ GQLKNKYGDAFI
Sbjct: 5 RTPNDFLKQIAGRPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYIGGQLKNKYGDAFI 64
Query: 73 RGNNVLYISTSK 84
RGNNVLYIST+K
Sbjct: 65 RGNNVLYISTTK 76
>gi|426232516|ref|XP_004010268.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Ovis
aries]
Length = 117
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/81 (80%), Positives = 72/81 (88%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK 66
K S +TP++FLK I G+ VVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNK
Sbjct: 37 KVSLQKQTPSNFLKQIIGQSVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNK 96
Query: 67 YGDAFIRGNNVLYISTSKRTL 87
YGDAFIRGNNVLYIST KR +
Sbjct: 97 YGDAFIRGNNVLYISTQKRRM 117
>gi|443703278|gb|ELU00915.1| hypothetical protein CAPTEDRAFT_152822 [Capitella teleta]
Length = 79
Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 64/73 (87%), Positives = 68/73 (93%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+TP+DFLK I GR VVVKLNSGVDYRG+LACLDGYMNIA+E TEEYVNGQLKNKYGDAFI
Sbjct: 5 QTPSDFLKQIIGRTVVVKLNSGVDYRGVLACLDGYMNIALEHTEEYVNGQLKNKYGDAFI 64
Query: 73 RGNNVLYISTSKR 85
RGNNVLYIST KR
Sbjct: 65 RGNNVLYISTQKR 77
>gi|341883036|gb|EGT38971.1| hypothetical protein CAEBREN_02711 [Caenorhabditis brenneri]
gi|341889446|gb|EGT45381.1| hypothetical protein CAEBREN_13550 [Caenorhabditis brenneri]
Length = 77
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 70/76 (92%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
+T + PA+FLK + G+PVVVKLNSGVDYRGILACLDGYMNIA+EQTEEY NGQL+NKYGD
Sbjct: 2 STRQNPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYGD 61
Query: 70 AFIRGNNVLYISTSKR 85
AFIRGNNVLYISTS +
Sbjct: 62 AFIRGNNVLYISTSTK 77
>gi|321461493|gb|EFX72525.1| hypothetical protein DAPPUDRAFT_59069 [Daphnia pulex]
Length = 79
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 69/76 (90%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
+ +TP +FLK I GRPVVVKLN+GVDYRG+LACLDGYMNIA+EQTEEY NGQLKNKYGD
Sbjct: 2 SARQTPNEFLKQIIGRPVVVKLNNGVDYRGVLACLDGYMNIALEQTEEYSNGQLKNKYGD 61
Query: 70 AFIRGNNVLYISTSKR 85
AFIRGNNVL+IST KR
Sbjct: 62 AFIRGNNVLFISTQKR 77
>gi|148700925|gb|EDL32872.1| mCG50614 [Mus musculus]
Length = 104
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/77 (83%), Positives = 67/77 (87%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S +TP DFLK I GRPVVVKLNSGV YRG+L CLDGYMNIA+EQTEEYVNGQLKNKY
Sbjct: 2 SLRKQTPNDFLKQIIGRPVVVKLNSGVGYRGVLVCLDGYMNIALEQTEEYVNGQLKNKYR 61
Query: 69 DAFIRGNNVLYISTSKR 85
DAFIRGNNVLYIST KR
Sbjct: 62 DAFIRGNNVLYISTQKR 78
>gi|242021065|ref|XP_002430967.1| membrane-associated protein, putative [Pediculus humanus
corporis]
gi|212516187|gb|EEB18229.1| membrane-associated protein, putative [Pediculus humanus
corporis]
Length = 79
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 61/72 (84%), Positives = 67/72 (93%)
Query: 16 ADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGN 75
+ F++ I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYGDAFIRGN
Sbjct: 8 SQFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGN 67
Query: 76 NVLYISTSKRTL 87
NVLYIST KR +
Sbjct: 68 NVLYISTQKRRI 79
>gi|357625163|gb|EHJ75691.1| putative membrane-associated protein [Danaus plexippus]
Length = 79
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 61/72 (84%), Positives = 67/72 (93%)
Query: 16 ADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGN 75
+ F++ I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYGDAFIRGN
Sbjct: 8 SSFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGN 67
Query: 76 NVLYISTSKRTL 87
NVLYIST KR +
Sbjct: 68 NVLYISTQKRRI 79
>gi|313231300|emb|CBY08415.1| unnamed protein product [Oikopleura dioica]
Length = 82
Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 61/80 (76%), Positives = 71/80 (88%)
Query: 6 EKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 65
+K ++ + P++FL+ I G PVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKN
Sbjct: 2 DKTTSKKQNPSEFLRKIIGNPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKN 61
Query: 66 KYGDAFIRGNNVLYISTSKR 85
KYGD FIRGNNVLYISTS +
Sbjct: 62 KYGDTFIRGNNVLYISTSSK 81
>gi|391332718|ref|XP_003740777.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Metaseiulus occidentalis]
Length = 79
Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 61/72 (84%), Positives = 68/72 (94%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
+ +DFLK + GRPVVVKLNSG+DYRG+L+CLDGYMNIA+EQTEEYVNGQLKNKYGDAFIR
Sbjct: 6 STSDFLKQLVGRPVVVKLNSGLDYRGVLSCLDGYMNIALEQTEEYVNGQLKNKYGDAFIR 65
Query: 74 GNNVLYISTSKR 85
GNNVLYIST KR
Sbjct: 66 GNNVLYISTVKR 77
>gi|393907321|gb|EFO22723.2| U6 snRNA-associated Sm-like protein LSm6 [Loa loa]
Length = 77
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/73 (83%), Positives = 68/73 (93%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+ P++FLK I G+PVVVKLNSGVDYRGIL+CLDG+MNIA+EQTEEY NGQLKNKYGDAFI
Sbjct: 5 QNPSEFLKQIIGKPVVVKLNSGVDYRGILSCLDGFMNIALEQTEEYSNGQLKNKYGDAFI 64
Query: 73 RGNNVLYISTSKR 85
RGNNVLYIST KR
Sbjct: 65 RGNNVLYISTQKR 77
>gi|17510579|ref|NP_490883.1| Protein LSM-6 [Caenorhabditis elegans]
gi|373219432|emb|CCD67971.1| Protein LSM-6 [Caenorhabditis elegans]
Length = 77
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/73 (83%), Positives = 68/73 (93%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+ PA+FLK + G+PVVVKLNSGVDYRGILACLDGYMNIA+EQTEEY NGQL+NKYGDAFI
Sbjct: 5 QNPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYGDAFI 64
Query: 73 RGNNVLYISTSKR 85
RGNNVLYISTS +
Sbjct: 65 RGNNVLYISTSTK 77
>gi|402590496|gb|EJW84426.1| U6 small ribonucleoprotein F [Wuchereria bancrofti]
Length = 77
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/73 (82%), Positives = 68/73 (93%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+ P++FLK I G+PVVVKLNSG+DYRGIL+CLDG+MNIA+EQTEEY NGQLKNKYGDAFI
Sbjct: 5 QNPSEFLKQIIGKPVVVKLNSGIDYRGILSCLDGFMNIALEQTEEYSNGQLKNKYGDAFI 64
Query: 73 RGNNVLYISTSKR 85
RGNNVLYIST KR
Sbjct: 65 RGNNVLYISTQKR 77
>gi|268563747|ref|XP_002638924.1| C. briggsae CBR-LSM-6 protein [Caenorhabditis briggsae]
Length = 77
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/73 (83%), Positives = 68/73 (93%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+ PA+FLK + G+PVVVKLNSGVDYRGILACLDGYMNIA+EQTEEY NGQL+NKYGDAFI
Sbjct: 5 QNPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYGDAFI 64
Query: 73 RGNNVLYISTSKR 85
RGNNVLYISTS +
Sbjct: 65 RGNNVLYISTSTK 77
>gi|110749924|ref|XP_001121733.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like [Apis
mellifera]
gi|350419231|ref|XP_003492114.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Bombus
impatiens]
gi|380023576|ref|XP_003695594.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Apis
florea]
gi|383861934|ref|XP_003706439.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Megachile rotundata]
Length = 79
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/70 (85%), Positives = 66/70 (94%)
Query: 16 ADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGN 75
+ F++ I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLK+KYGDAFIRGN
Sbjct: 8 SQFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKDKYGDAFIRGN 67
Query: 76 NVLYISTSKR 85
NVLYIST KR
Sbjct: 68 NVLYISTQKR 77
>gi|428183531|gb|EKX52389.1| hypothetical protein GUITHDRAFT_157136 [Guillardia theta
CCMP2712]
Length = 84
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/72 (81%), Positives = 67/72 (93%)
Query: 11 TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
+ ++P +FL + GRPVVVKLN+GVDY+G+LACLDGYMNIAMEQTEEYVNGQLKNKYGDA
Sbjct: 7 SKRSPTEFLSQVTGRPVVVKLNTGVDYKGVLACLDGYMNIAMEQTEEYVNGQLKNKYGDA 66
Query: 71 FIRGNNVLYIST 82
FIRGNNVLYIST
Sbjct: 67 FIRGNNVLYIST 78
>gi|156550741|ref|XP_001606104.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Nasonia
vitripennis]
Length = 80
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/70 (85%), Positives = 66/70 (94%)
Query: 16 ADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGN 75
+ F++ I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLK+KYGDAFIRGN
Sbjct: 8 SQFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKDKYGDAFIRGN 67
Query: 76 NVLYISTSKR 85
NVLYIST KR
Sbjct: 68 NVLYISTQKR 77
>gi|339244427|ref|XP_003378139.1| small nuclear ribonucleoprotein F [Trichinella spiralis]
gi|316972974|gb|EFV56616.1| small nuclear ribonucleoprotein F [Trichinella spiralis]
Length = 373
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 58/73 (79%), Positives = 68/73 (93%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+TP++FLK + G+PV+VKLNSG+DYRGILACLDGY+N+A+EQTEEY NGQLK KYGDAFI
Sbjct: 299 QTPSEFLKQLIGKPVMVKLNSGLDYRGILACLDGYLNVALEQTEEYANGQLKQKYGDAFI 358
Query: 73 RGNNVLYISTSKR 85
RGNNVLYIST KR
Sbjct: 359 RGNNVLYISTQKR 371
>gi|307195205|gb|EFN77189.1| U6 snRNA-associated Sm-like protein LSm6 [Harpegnathos saltator]
Length = 79
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/70 (85%), Positives = 66/70 (94%)
Query: 16 ADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGN 75
+ F++ I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLK+KYGDAFIRGN
Sbjct: 8 SQFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKDKYGDAFIRGN 67
Query: 76 NVLYISTSKR 85
NVLYIST KR
Sbjct: 68 NVLYISTQKR 77
>gi|339244381|ref|XP_003378116.1| small nuclear ribonucleoprotein F [Trichinella spiralis]
gi|316973000|gb|EFV56639.1| small nuclear ribonucleoprotein F [Trichinella spiralis]
Length = 327
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 58/73 (79%), Positives = 68/73 (93%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+TP++FLK + G+PV+VKLNSG+DYRGILACLDGY+N+A+EQTEEY NGQLK KYGDAFI
Sbjct: 253 QTPSEFLKQLIGKPVMVKLNSGLDYRGILACLDGYLNVALEQTEEYANGQLKQKYGDAFI 312
Query: 73 RGNNVLYISTSKR 85
RGNNVLYIST KR
Sbjct: 313 RGNNVLYISTQKR 325
>gi|91082305|ref|XP_974175.1| PREDICTED: similar to AGAP005314-PA [Tribolium castaneum]
gi|270007198|gb|EFA03646.1| hypothetical protein TcasGA2_TC013740 [Tribolium castaneum]
Length = 79
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 59/72 (81%), Positives = 66/72 (91%)
Query: 16 ADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGN 75
+ F++ I RPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNK+GDAFIRGN
Sbjct: 8 SSFIQQIHARPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKFGDAFIRGN 67
Query: 76 NVLYISTSKRTL 87
NVLYIST KR +
Sbjct: 68 NVLYISTQKRRI 79
>gi|332023213|gb|EGI63469.1| U6 snRNA-associated Sm-like protein LSm6 [Acromyrmex echinatior]
Length = 608
Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 59/70 (84%), Positives = 66/70 (94%)
Query: 16 ADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGN 75
+ F++ I GRPVVVKLNSGVDYRG+LAC+DGYMNIA+EQTEEYVNGQLK+KYGDAFIRGN
Sbjct: 537 SQFIQQIHGRPVVVKLNSGVDYRGVLACIDGYMNIALEQTEEYVNGQLKDKYGDAFIRGN 596
Query: 76 NVLYISTSKR 85
NVLYIST KR
Sbjct: 597 NVLYISTQKR 606
>gi|308498301|ref|XP_003111337.1| CRE-LSM-6 protein [Caenorhabditis remanei]
gi|308240885|gb|EFO84837.1| CRE-LSM-6 protein [Caenorhabditis remanei]
Length = 77
Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/73 (82%), Positives = 68/73 (93%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+ P++FLK + G+PVVVKLNSGVDYRGILACLDGYMNIA+EQTEEY NGQL+NKYGDAFI
Sbjct: 5 QNPSEFLKRVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYGDAFI 64
Query: 73 RGNNVLYISTSKR 85
RGNNVLYISTS +
Sbjct: 65 RGNNVLYISTSTK 77
>gi|58387098|ref|XP_315329.2| AGAP005314-PA [Anopheles gambiae str. PEST]
gi|170059581|ref|XP_001865425.1| Lsm6 protein [Culex quinquefasciatus]
gi|55238130|gb|EAA11294.2| AGAP005314-PA [Anopheles gambiae str. PEST]
gi|167878291|gb|EDS41674.1| Lsm6 protein [Culex quinquefasciatus]
gi|312381097|gb|EFR26918.1| hypothetical protein AND_25803 [Anopheles darlingi]
gi|403182446|gb|EJY57393.1| AAEL017161-PA [Aedes aegypti]
Length = 79
Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/72 (83%), Positives = 66/72 (91%)
Query: 16 ADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGN 75
+ F+ I GRPVVVKLNSGVDYRG+LACLDGYMNIA++QTEEYVNGQLKNKYGDAFIRGN
Sbjct: 8 SQFINQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALDQTEEYVNGQLKNKYGDAFIRGN 67
Query: 76 NVLYISTSKRTL 87
NVLYIST KR +
Sbjct: 68 NVLYISTQKRRV 79
>gi|334331104|ref|XP_001376922.2| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like
[Monodelphis domestica]
Length = 97
Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/77 (80%), Positives = 69/77 (89%), Gaps = 2/77 (2%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 61
Query: 69 DAFIRGN--NVLYISTS 83
DAFIRGN NVL+ +T+
Sbjct: 62 DAFIRGNNGNVLFFTTT 78
>gi|307184080|gb|EFN70615.1| U6 snRNA-associated Sm-like protein LSm6 [Camponotus floridanus]
Length = 79
Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 59/70 (84%), Positives = 66/70 (94%)
Query: 16 ADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGN 75
+ F++ I GRPVVVKLNSGVDYRG+LAC+DGYMNIA+EQTEEYVNGQLK+KYGDAFIRGN
Sbjct: 8 SQFIQQIHGRPVVVKLNSGVDYRGVLACIDGYMNIALEQTEEYVNGQLKDKYGDAFIRGN 67
Query: 76 NVLYISTSKR 85
NVLYIST KR
Sbjct: 68 NVLYISTQKR 77
>gi|302836979|ref|XP_002950049.1| hypothetical protein VOLCADRAFT_60073 [Volvox carteri f.
nagariensis]
gi|300264522|gb|EFJ48717.1| hypothetical protein VOLCADRAFT_60073 [Volvox carteri f.
nagariensis]
Length = 73
Score = 130 bits (327), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 60/71 (84%), Positives = 68/71 (95%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+TPA+FLK+I+G+PV+VKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI
Sbjct: 1 QTPAEFLKAIKGKPVLVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 60
Query: 73 RGNNVLYISTS 83
RGNN I+T+
Sbjct: 61 RGNNGTPITTA 71
>gi|221121818|ref|XP_002166122.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Hydra
magnipapillata]
Length = 79
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/78 (76%), Positives = 68/78 (87%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
+ + P+DFLK I GRPVVVKLNSGVDYRG+L LDGYMNI +EQTEEYVNGQLKNKYGD
Sbjct: 2 SQRQDPSDFLKQIIGRPVVVKLNSGVDYRGVLGSLDGYMNIVLEQTEEYVNGQLKNKYGD 61
Query: 70 AFIRGNNVLYISTSKRTL 87
AF+RGNNVLYIST K+ +
Sbjct: 62 AFLRGNNVLYISTRKQKV 79
>gi|320167319|gb|EFW44218.1| U6 snRNA-associated Sm-like protein LSm6 [Capsaspora owczarzaki
ATCC 30864]
Length = 83
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/80 (75%), Positives = 71/80 (88%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
+ T + P+ FL+ I G+PVVVKLNSGV+Y+G+LACLDGYMNIA+EQTEEYVNGQLK+KYG
Sbjct: 4 APTKQGPSAFLRHIIGKPVVVKLNSGVEYKGLLACLDGYMNIALEQTEEYVNGQLKSKYG 63
Query: 69 DAFIRGNNVLYISTSKRTLA 88
DAFIRGNNVLYIS SK+ A
Sbjct: 64 DAFIRGNNVLYISASKKRSA 83
>gi|301101082|ref|XP_002899630.1| U6 snRNA-associated Sm-like protein LSm6, putative [Phytophthora
infestans T30-4]
gi|262103938|gb|EEY61990.1| U6 snRNA-associated Sm-like protein LSm6, putative [Phytophthora
infestans T30-4]
Length = 83
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/79 (73%), Positives = 70/79 (88%)
Query: 6 EKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 65
E+ ++T KTP+DFLK + GRPV VKLN+GV+Y+G+LACLDG+MNIAMEQT+EY NGQLK
Sbjct: 5 EQQTSTKKTPSDFLKGVLGRPVDVKLNNGVEYKGVLACLDGFMNIAMEQTQEYQNGQLKA 64
Query: 66 KYGDAFIRGNNVLYISTSK 84
+YGD FIRGNNVLYIS SK
Sbjct: 65 QYGDCFIRGNNVLYISASK 83
>gi|348677781|gb|EGZ17598.1| hypothetical protein PHYSODRAFT_499052 [Phytophthora sojae]
Length = 84
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 72/84 (85%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
M+ ++ ++T KTP+DFLK + GRPV VKLN+GV+Y+G+LACLDG+MNIAMEQT+EY N
Sbjct: 1 MANQQQEQASTKKTPSDFLKGVLGRPVDVKLNNGVEYKGVLACLDGFMNIAMEQTQEYSN 60
Query: 61 GQLKNKYGDAFIRGNNVLYISTSK 84
GQLK +YGD FIRGNNVLYIS SK
Sbjct: 61 GQLKAQYGDCFIRGNNVLYISASK 84
>gi|149898865|gb|ABR27921.1| small ribonuclear protein [Triatoma infestans]
Length = 80
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/76 (78%), Positives = 67/76 (88%), Gaps = 1/76 (1%)
Query: 11 TTKTP-ADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
+ K P F++ I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLK KYGD
Sbjct: 2 SRKEPLTQFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKEKYGD 61
Query: 70 AFIRGNNVLYISTSKR 85
AF+RGNNVLYIS+ KR
Sbjct: 62 AFLRGNNVLYISSQKR 77
>gi|452823027|gb|EME30041.1| U6 snRNA-associated Sm-like protein LSm6 isoform 1 [Galdieria
sulphuraria]
Length = 89
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/79 (72%), Positives = 69/79 (87%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK 66
+G+ ++PADFLK + G+PVVVKLNSGV+Y+G+LACLDGYMNIAMEQTEE+V QLKNK
Sbjct: 4 QGNIEKRSPADFLKQVVGKPVVVKLNSGVEYKGVLACLDGYMNIAMEQTEEHVGTQLKNK 63
Query: 67 YGDAFIRGNNVLYISTSKR 85
YGD FIRGNNVLYI+ K+
Sbjct: 64 YGDTFIRGNNVLYIAAQKK 82
>gi|224000756|ref|XP_002290050.1| hypothetical protein THAPSDRAFT_262381 [Thalassiosira pseudonana
CCMP1335]
gi|220973472|gb|EED91802.1| hypothetical protein THAPSDRAFT_262381, partial [Thalassiosira
pseudonana CCMP1335]
Length = 75
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 68/73 (93%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
++P+DFLK++ GRPV V+LN+G DYRG+LACLDGYMNIAMEQTEEYV+GQLK+KYGD FI
Sbjct: 3 RSPSDFLKAVLGRPVNVRLNTGTDYRGVLACLDGYMNIAMEQTEEYVDGQLKSKYGDCFI 62
Query: 73 RGNNVLYISTSKR 85
RGNNV+YIS+ KR
Sbjct: 63 RGNNVMYISSQKR 75
>gi|195029477|ref|XP_001987599.1| GH22008 [Drosophila grimshawi]
gi|195119462|ref|XP_002004250.1| GI19714 [Drosophila mojavensis]
gi|195401621|ref|XP_002059411.1| GJ17501 [Drosophila virilis]
gi|193903599|gb|EDW02466.1| GH22008 [Drosophila grimshawi]
gi|193909318|gb|EDW08185.1| GI19714 [Drosophila mojavensis]
gi|194142417|gb|EDW58823.1| GJ17501 [Drosophila virilis]
Length = 79
Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 65/72 (90%)
Query: 16 ADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGN 75
+ F+ I GRPV VKLN+GVDYRG+LACLDGYMNIA++QTEEYVNGQLKNKYGDAFIRGN
Sbjct: 8 SQFINQIHGRPVAVKLNNGVDYRGVLACLDGYMNIALDQTEEYVNGQLKNKYGDAFIRGN 67
Query: 76 NVLYISTSKRTL 87
NVLYIST KR +
Sbjct: 68 NVLYISTQKRRV 79
>gi|24656550|ref|NP_611528.1| CG9344 [Drosophila melanogaster]
gi|125810771|ref|XP_001361619.1| GA21716 [Drosophila pseudoobscura pseudoobscura]
gi|194753682|ref|XP_001959139.1| GF12211 [Drosophila ananassae]
gi|194881738|ref|XP_001974978.1| GG22072 [Drosophila erecta]
gi|195154152|ref|XP_002017986.1| GL17007 [Drosophila persimilis]
gi|195346251|ref|XP_002039679.1| GM15790 [Drosophila sechellia]
gi|195456011|ref|XP_002074964.1| GK23338 [Drosophila willistoni]
gi|195486699|ref|XP_002091616.1| GE12153 [Drosophila yakuba]
gi|195585248|ref|XP_002082401.1| GD11551 [Drosophila simulans]
gi|7291213|gb|AAF46645.1| CG9344 [Drosophila melanogaster]
gi|21064499|gb|AAM29479.1| RE43665p [Drosophila melanogaster]
gi|38048229|gb|AAR10017.1| similar to Drosophila melanogaster CG9344, partial [Drosophila
yakuba]
gi|54636795|gb|EAL26198.1| GA21716 [Drosophila pseudoobscura pseudoobscura]
gi|190620437|gb|EDV35961.1| GF12211 [Drosophila ananassae]
gi|190658165|gb|EDV55378.1| GG22072 [Drosophila erecta]
gi|194113782|gb|EDW35825.1| GL17007 [Drosophila persimilis]
gi|194135028|gb|EDW56544.1| GM15790 [Drosophila sechellia]
gi|194171049|gb|EDW85950.1| GK23338 [Drosophila willistoni]
gi|194177717|gb|EDW91328.1| GE12153 [Drosophila yakuba]
gi|194194410|gb|EDX07986.1| GD11551 [Drosophila simulans]
gi|220950784|gb|ACL87935.1| CG9344-PA [synthetic construct]
gi|220959486|gb|ACL92286.1| CG9344-PA [synthetic construct]
Length = 79
Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%)
Query: 16 ADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGN 75
+ F+ I GRPV VKLN+GVDYRG+LACLDGYMNI +EQTEEYVNGQLKNKYGDAFIRGN
Sbjct: 8 SQFINQIHGRPVAVKLNNGVDYRGVLACLDGYMNICLEQTEEYVNGQLKNKYGDAFIRGN 67
Query: 76 NVLYISTSKRTL 87
NVLYIST KR +
Sbjct: 68 NVLYISTQKRRV 79
>gi|432114062|gb|ELK36109.1| U6 snRNA-associated Sm-like protein LSm6 [Myotis davidii]
Length = 84
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/68 (86%), Positives = 63/68 (92%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 61
Query: 69 DAFIRGNN 76
DAFIRGNN
Sbjct: 62 DAFIRGNN 69
>gi|281354086|gb|EFB29670.1| hypothetical protein PANDA_004348 [Ailuropoda melanoleuca]
Length = 78
Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/68 (86%), Positives = 63/68 (92%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 61
Query: 69 DAFIRGNN 76
DAFIRGNN
Sbjct: 62 DAFIRGNN 69
>gi|444729643|gb|ELW70053.1| U6 snRNA-associated Sm-like protein LSm6 [Tupaia chinensis]
Length = 82
Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/68 (86%), Positives = 63/68 (92%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 61
Query: 69 DAFIRGNN 76
DAFIRGNN
Sbjct: 62 DAFIRGNN 69
>gi|328697100|ref|XP_003240231.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like isoform
1 [Acyrthosiphon pisum]
gi|328697102|ref|XP_003240232.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like isoform
2 [Acyrthosiphon pisum]
Length = 80
Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 55/69 (79%), Positives = 65/69 (94%)
Query: 17 DFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNN 76
F++ I GRPVVVKLNSGVDYRG++AC+DGYMNIA+EQTEEY+NG+LKNK+GD+FIRGNN
Sbjct: 9 QFIQQIHGRPVVVKLNSGVDYRGVMACIDGYMNIALEQTEEYINGELKNKFGDSFIRGNN 68
Query: 77 VLYISTSKR 85
VLYIST KR
Sbjct: 69 VLYISTQKR 77
>gi|225712226|gb|ACO11959.1| U6 snRNA-associated Sm-like protein LSm6 [Lepeophtheirus
salmonis]
gi|225712252|gb|ACO11972.1| U6 snRNA-associated Sm-like protein LSm6 [Lepeophtheirus
salmonis]
Length = 85
Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 60/83 (72%), Positives = 67/83 (80%), Gaps = 7/83 (8%)
Query: 2 STGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNG 61
STG +K P DFLK I GRPV+VKLNSG DYRG+L+CLDG+MNIA+EQTEEY G
Sbjct: 4 STGAQK-------PKDFLKQILGRPVLVKLNSGSDYRGVLSCLDGHMNIALEQTEEYCEG 56
Query: 62 QLKNKYGDAFIRGNNVLYISTSK 84
QLKNKYGD F+RGNNVLYIST K
Sbjct: 57 QLKNKYGDCFLRGNNVLYISTQK 79
>gi|60687576|gb|AAX30121.1| putative U6-snRNA-associated protein [Schistosoma japonicum]
Length = 78
Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 59/76 (77%), Positives = 64/76 (84%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
A +TP DFLK I GRPVVVKLNSG DYRG+L LDGYMN+ +EQTEEYV+GQLKNKYGD
Sbjct: 2 AHKQTPRDFLKLIIGRPVVVKLNSGADYRGVLISLDGYMNVVLEQTEEYVDGQLKNKYGD 61
Query: 70 AFIRGNNVLYISTSKR 85
FIRGNNV YIST KR
Sbjct: 62 TFIRGNNVFYISTQKR 77
>gi|149058700|gb|EDM09857.1| rCG63582, isoform CRA_a [Rattus norvegicus]
Length = 81
Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 60/70 (85%), Positives = 64/70 (91%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 61
Query: 69 DAFIRGNNVL 78
DAFIRGNN L
Sbjct: 62 DAFIRGNNGL 71
>gi|11602707|emb|CAC18540.1| putative U6-snRNA-associated protein [Echinococcus
multilocularis]
Length = 83
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/76 (76%), Positives = 63/76 (82%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
+ +TP DFLK I GRPVVVKLNSG DYRG+L LDGYMN+ +EQTEEYV GQLKNKYGD
Sbjct: 4 SQKQTPRDFLKLIIGRPVVVKLNSGADYRGVLISLDGYMNVVLEQTEEYVEGQLKNKYGD 63
Query: 70 AFIRGNNVLYISTSKR 85
FIRGNNV YIST KR
Sbjct: 64 TFIRGNNVFYISTQKR 79
>gi|440802693|gb|ELR23622.1| Smlike protein LSm6, putative [Acanthamoeba castellanii str.
Neff]
Length = 84
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/77 (77%), Positives = 67/77 (87%), Gaps = 3/77 (3%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K+P+DFLK + GRPV+VKLNSGV Y+GIL LDGYMNIAMEQTEEYV+GQLK KYGDAFI
Sbjct: 8 KSPSDFLKLVLGRPVIVKLNSGVTYQGILVALDGYMNIAMEQTEEYVHGQLKGKYGDAFI 67
Query: 73 RGNNVLYIS---TSKRT 86
RGNNVLYIS T KR+
Sbjct: 68 RGNNVLYISSQPTHKRS 84
>gi|240977906|ref|XP_002402835.1| small nuclear ribonucleoprotein f, putative [Ixodes scapularis]
gi|215491231|gb|EEC00872.1| small nuclear ribonucleoprotein f, putative [Ixodes scapularis]
Length = 116
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 61/65 (93%)
Query: 23 RGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIST 82
R PVVVKLNSG+DYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYGDAFIRGNNVLYIST
Sbjct: 52 RHEPVVVKLNSGLDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYIST 111
Query: 83 SKRTL 87
KR +
Sbjct: 112 QKRRI 116
>gi|328854944|gb|EGG04073.1| hypothetical protein MELLADRAFT_72433 [Melampsora larici-populina
98AG31]
Length = 93
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/84 (71%), Positives = 67/84 (79%), Gaps = 4/84 (4%)
Query: 2 STGGEKGSATTK----TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEE 57
ST E +ATT TPADFLK + G VVV+LNSGVDYRGIL+CLDGYMNIA+E TEE
Sbjct: 7 STNEESTNATTTLTGGTPADFLKQVVGHEVVVRLNSGVDYRGILSCLDGYMNIALENTEE 66
Query: 58 YVNGQLKNKYGDAFIRGNNVLYIS 81
YVNG +N YGDAF+RGNNVLYIS
Sbjct: 67 YVNGIKRNSYGDAFVRGNNVLYIS 90
>gi|170577453|ref|XP_001894009.1| U6 snRNA-associated Sm-like protein LSm6 [Brugia malayi]
gi|158599611|gb|EDP37154.1| U6 snRNA-associated Sm-like protein LSm6, putative [Brugia
malayi]
Length = 77
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/71 (74%), Positives = 65/71 (91%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+ P++FLK I G+PVVVKLNSG+DYRGIL+CLDG+MNIA+EQTEEY NGQLKNKYGDAFI
Sbjct: 5 QNPSEFLKQIIGKPVVVKLNSGIDYRGILSCLDGFMNIALEQTEEYSNGQLKNKYGDAFI 64
Query: 73 RGNNVLYISTS 83
RGNN L+++ +
Sbjct: 65 RGNNGLFLNLN 75
>gi|312077539|ref|XP_003141348.1| hypothetical protein LOAG_05763 [Loa loa]
Length = 71
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/67 (80%), Positives = 62/67 (92%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+ P++FLK I G+PVVVKLNSGVDYRGIL+CLDG+MNIA+EQTEEY NGQLKNKYGDAFI
Sbjct: 5 QNPSEFLKQIIGKPVVVKLNSGVDYRGILSCLDGFMNIALEQTEEYSNGQLKNKYGDAFI 64
Query: 73 RGNNVLY 79
RGNN L+
Sbjct: 65 RGNNGLF 71
>gi|393219154|gb|EJD04642.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 97
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 65/79 (82%)
Query: 6 EKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 65
E + +P DFLK + G+ V+V+L SGVDYRG+L+CLDGYMNIA+EQTEEYVNG++ N
Sbjct: 17 EAPTPPVGSPTDFLKGVVGKRVIVRLTSGVDYRGLLSCLDGYMNIALEQTEEYVNGRVTN 76
Query: 66 KYGDAFIRGNNVLYISTSK 84
KYGDAF+RGNNVLYIS +
Sbjct: 77 KYGDAFVRGNNVLYISADE 95
>gi|336368839|gb|EGN97181.1| hypothetical protein SERLA73DRAFT_92211 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381639|gb|EGO22790.1| hypothetical protein SERLADRAFT_471211 [Serpula lacrymans var.
lacrymans S7.9]
Length = 98
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 65/74 (87%)
Query: 11 TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
T+ +P DFLK + G+ V+V+L SGVDYRG+L+CLDGYMNIA+EQTEE+VNG L N+YGDA
Sbjct: 23 TSGSPTDFLKGVVGKRVIVRLTSGVDYRGVLSCLDGYMNIALEQTEEHVNGTLTNRYGDA 82
Query: 71 FIRGNNVLYISTSK 84
F+RGNNVLYIS ++
Sbjct: 83 FVRGNNVLYISAAE 96
>gi|323455823|gb|EGB11691.1| hypothetical protein AURANDRAFT_21376 [Aureococcus anophagefferens]
Length = 104
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 65/87 (74%), Gaps = 16/87 (18%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEY---------------- 58
P+DFLK++ GRPV+VKLNSGV YRGILACLDGYMNIAMEQTEEY
Sbjct: 15 PSDFLKAVLGRPVIVKLNSGVSYRGILACLDGYMNIAMEQTEEYARRGARETARARAARR 74
Query: 59 VNGQLKNKYGDAFIRGNNVLYISTSKR 85
V+GQLK KYGD FIRGNNV YIST +R
Sbjct: 75 VDGQLKAKYGDCFIRGNNVHYISTIRR 101
>gi|452823026|gb|EME30040.1| U6 snRNA-associated Sm-like protein LSm6 isoform 2 [Galdieria
sulphuraria]
Length = 75
Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 62/70 (88%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK 66
+G+ ++PADFLK + G+PVVVKLNSGV+Y+G+LACLDGYMNIAMEQTEE+V QLKNK
Sbjct: 4 QGNIEKRSPADFLKQVVGKPVVVKLNSGVEYKGVLACLDGYMNIAMEQTEEHVGTQLKNK 63
Query: 67 YGDAFIRGNN 76
YGD FIRGNN
Sbjct: 64 YGDTFIRGNN 73
>gi|384492879|gb|EIE83370.1| U6 snRNA-associated Sm-like protein LSm6 [Rhizopus delemar RA
99-880]
Length = 79
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 63/73 (86%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
++TP DFL ++ G+ V VKLNSG+DY+G LACLDGYMNIA+E TEEYV+G+LKNKYGD F
Sbjct: 7 SRTPTDFLGTVLGQTVKVKLNSGIDYKGTLACLDGYMNIALENTEEYVDGRLKNKYGDTF 66
Query: 72 IRGNNVLYISTSK 84
IRGNNVLYIS K
Sbjct: 67 IRGNNVLYISADK 79
>gi|409077094|gb|EKM77461.1| hypothetical protein AGABI1DRAFT_61513 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426191830|gb|EKV41769.1| hypothetical protein AGABI2DRAFT_212748 [Agaricus bisporus var.
bisporus H97]
Length = 95
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 65/73 (89%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
T +P DFLK++ G+ V+V+L SGVDYRGIL+CLDGYMNIA+EQTEE+VNG + NKYGDAF
Sbjct: 21 TGSPTDFLKNVVGKKVIVRLLSGVDYRGILSCLDGYMNIALEQTEEHVNGVVTNKYGDAF 80
Query: 72 IRGNNVLYISTSK 84
IRGNNVLYIS ++
Sbjct: 81 IRGNNVLYISAAE 93
>gi|392586650|gb|EIW75986.1| LSM-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 98
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 63/71 (88%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
+P DFLK + G+ V+V+L SGVDYRGIL+CLDGYMNIA+EQTEE+VNG + N+YGDAFIR
Sbjct: 26 SPTDFLKGVVGKRVIVRLTSGVDYRGILSCLDGYMNIALEQTEEHVNGSVTNRYGDAFIR 85
Query: 74 GNNVLYISTSK 84
GNNVLYIS ++
Sbjct: 86 GNNVLYISAAE 96
>gi|328766806|gb|EGF76858.1| hypothetical protein BATDEDRAFT_92275 [Batrachochytrium
dendrobatidis JAM81]
Length = 78
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 64/74 (86%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
++P +FL+ + G+PVVVKLNSGVDYRGILACLDGYMNIA+E+T+EYV+G K+ YGD FI
Sbjct: 3 RSPQEFLQHVIGQPVVVKLNSGVDYRGILACLDGYMNIALEETKEYVDGVEKHDYGDCFI 62
Query: 73 RGNNVLYISTSKRT 86
RGNNVLYI+ K+
Sbjct: 63 RGNNVLYIAAQKQA 76
>gi|219111981|ref|XP_002177742.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410627|gb|EEC50556.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 66
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/64 (79%), Positives = 60/64 (93%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
++P+DFLKS+ GRPV VKLNSG++YRGILACLDGY+NIAMEQTEEYV+GQL+ KYGD FI
Sbjct: 3 RSPSDFLKSVLGRPVQVKLNSGIEYRGILACLDGYLNIAMEQTEEYVDGQLQAKYGDCFI 62
Query: 73 RGNN 76
RGNN
Sbjct: 63 RGNN 66
>gi|170114328|ref|XP_001888361.1| predicted protein [Laccaria bicolor S238N-H82]
gi|189028838|sp|B0DWN3.1|LSM6_LACBS RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|164636673|gb|EDR00966.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 99
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 64/73 (87%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
T +P DFLK + G+ V+V+L SGVDYRG+L+CLDGYMNIA+EQTEE+VNG + N+YGDAF
Sbjct: 25 TGSPTDFLKGVVGKRVIVRLTSGVDYRGLLSCLDGYMNIALEQTEEHVNGVVTNRYGDAF 84
Query: 72 IRGNNVLYISTSK 84
IRGNNVLYIS ++
Sbjct: 85 IRGNNVLYISAAE 97
>gi|325185112|emb|CCA19604.1| U6 snRNAassociated Smlike protein LSm6 putative [Albugo laibachii
Nc14]
Length = 81
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 63/70 (90%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK 66
+G++ KTP+DFLK++ GRPV VKLN+G +YRG+LACLDG+MNIAMEQT+EY+NGQLK +
Sbjct: 5 EGNSQKKTPSDFLKNVLGRPVDVKLNNGSEYRGVLACLDGFMNIAMEQTQEYINGQLKAQ 64
Query: 67 YGDAFIRGNN 76
YGD FIRGNN
Sbjct: 65 YGDCFIRGNN 74
>gi|403157835|ref|XP_003307220.2| small nuclear ribonucleoprotein [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375163571|gb|EFP74214.2| small nuclear ribonucleoprotein [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 96
Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 61/73 (83%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
+ T TP+DFLK + G V V+LNSGVDYRGIL+CLDGYMNIA+E TEEYVNG +N YG
Sbjct: 21 TGTGGTPSDFLKQVVGHQVTVRLNSGVDYRGILSCLDGYMNIALENTEEYVNGIKRNSYG 80
Query: 69 DAFIRGNNVLYIS 81
DAF+RGNNVLYIS
Sbjct: 81 DAFLRGNNVLYIS 93
>gi|402219102|gb|EJT99176.1| U6 snRNA-associated Sm-like protein LSm6 [Dacryopinax sp. DJM-731
SS1]
Length = 88
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 69/83 (83%), Gaps = 2/83 (2%)
Query: 1 MSTGGEKGSAT--TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEY 58
MS+ + S+T TPADFLK + G+ VVV+L SGVDY+G+L+CLDGYMNIA+EQTEEY
Sbjct: 1 MSSEPPQDSSTGAVGTPADFLKGVIGKRVVVRLISGVDYQGLLSCLDGYMNIALEQTEEY 60
Query: 59 VNGQLKNKYGDAFIRGNNVLYIS 81
V+G + N+YGDAFIRGNNVLYIS
Sbjct: 61 VDGAVVNRYGDAFIRGNNVLYIS 83
>gi|302683352|ref|XP_003031357.1| hypothetical protein SCHCODRAFT_68498 [Schizophyllum commune
H4-8]
gi|300105049|gb|EFI96454.1| hypothetical protein SCHCODRAFT_68498 [Schizophyllum commune
H4-8]
Length = 97
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 65/74 (87%)
Query: 11 TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
TT +P DFLK + G+ V+V+L SGVDYRG+L+CLDGYMNIA+EQTEE+V G++ N+YGDA
Sbjct: 22 TTGSPTDFLKGVVGKRVIVRLISGVDYRGVLSCLDGYMNIALEQTEEHVGGRVVNRYGDA 81
Query: 71 FIRGNNVLYISTSK 84
FIRGNNVLYIS ++
Sbjct: 82 FIRGNNVLYISAAE 95
>gi|358056533|dbj|GAA97502.1| hypothetical protein E5Q_04180 [Mixia osmundae IAM 14324]
Length = 86
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/68 (75%), Positives = 62/68 (91%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
+P+DFLK+ G+ V V+LNSGVDYRGIL+CLD Y+NIAMEQTEE VNGQ++N+YGD+FIR
Sbjct: 14 SPSDFLKNTVGQLVSVRLNSGVDYRGILSCLDAYLNIAMEQTEEVVNGQVRNRYGDSFIR 73
Query: 74 GNNVLYIS 81
GNNVLYIS
Sbjct: 74 GNNVLYIS 81
>gi|353243979|emb|CCA75450.1| probable U6 snRNA-associated Sm-like protein LSm6 [Piriformospora
indica DSM 11827]
Length = 95
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 64/83 (77%)
Query: 2 STGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNG 61
ST +P DFLK++ G+ VVV+L SGVDY+G+L CLDGYMNIAMEQTEE+VNG
Sbjct: 11 STAPVSAPVAKGSPNDFLKAVVGKRVVVRLVSGVDYKGVLQCLDGYMNIAMEQTEEHVNG 70
Query: 62 QLKNKYGDAFIRGNNVLYISTSK 84
+ N+YGDAFIRGNNVLYIS +
Sbjct: 71 VITNRYGDAFIRGNNVLYISAGE 93
>gi|256053086|ref|XP_002570039.1| small nuclear ribonucleoprotein f (snrnp-f) [Schistosoma mansoni]
gi|256062525|ref|XP_002570343.1| small nuclear ribonucleoprotein f (snrnp-f) [Schistosoma mansoni]
gi|350644790|emb|CCD60497.1| small nuclear ribonucleoprotein f (snrnp-f),putative [Schistosoma
mansoni]
Length = 122
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/67 (76%), Positives = 57/67 (85%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
A +TP DFLK I GRPVVVKLNSG DYRG+L LDGYMN+ +EQTEEY++GQLKNKYGD
Sbjct: 2 AHKQTPRDFLKLIVGRPVVVKLNSGADYRGVLISLDGYMNVVLEQTEEYIDGQLKNKYGD 61
Query: 70 AFIRGNN 76
FIRGNN
Sbjct: 62 TFIRGNN 68
>gi|189028854|sp|Q4PG71.2|LSM6_USTMA RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 85
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 67/85 (78%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
MS ++ +A +P DFLK + G+ V V+LNSG+DYRG+L+CLDGYMNIA+EQT EYV+
Sbjct: 1 MSAAAQQPNAKAGSPNDFLKGVIGKNVNVRLNSGIDYRGVLSCLDGYMNIALEQTVEYVD 60
Query: 61 GQLKNKYGDAFIRGNNVLYISTSKR 85
G KN YGDAFIRGNNV+YI+ ++
Sbjct: 61 GIKKNSYGDAFIRGNNVMYITALEK 85
>gi|213408613|ref|XP_002175077.1| U6 snRNP-associated protein Lsm6 [Schizosaccharomyces japonicus
yFS275]
gi|212003124|gb|EEB08784.1| U6 snRNP-associated protein Lsm6 [Schizosaccharomyces japonicus
yFS275]
Length = 75
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 62/72 (86%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
+P++FL + G+PV ++LNSGVDY+GIL+CLDGYMN+A+E TEEYVNG+ N+YGDAFIR
Sbjct: 4 SPSEFLNKVIGKPVFIRLNSGVDYKGILSCLDGYMNLALENTEEYVNGKKTNEYGDAFIR 63
Query: 74 GNNVLYISTSKR 85
GNNVLY+S +
Sbjct: 64 GNNVLYVSAIRE 75
>gi|345567352|gb|EGX50284.1| hypothetical protein AOL_s00076g48 [Arthrobotrys oligospora ATCC
24927]
Length = 86
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 61/76 (80%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
++++K P+ FL I G P+ VKLNSGV+Y+G L +DGYMNIA+E TEEYVNG+ KN+YG
Sbjct: 11 TSSSKDPSSFLSEIHGAPITVKLNSGVEYKGELQSVDGYMNIALENTEEYVNGERKNRYG 70
Query: 69 DAFIRGNNVLYISTSK 84
D FIRGNNVLYIS K
Sbjct: 71 DVFIRGNNVLYISADK 86
>gi|388851483|emb|CCF54885.1| probable U6 snRNA-associated Sm-like protein LSm6 [Ustilago
hordei]
Length = 85
Score = 110 bits (276), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 66/85 (77%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
MS+ + T +P DFLK + G+ V V+LNSG+DYRG+L+CLDGYMNIA+EQT EYV+
Sbjct: 1 MSSTQAQQQPKTGSPNDFLKGVIGKNVNVRLNSGIDYRGVLSCLDGYMNIALEQTVEYVD 60
Query: 61 GQLKNKYGDAFIRGNNVLYISTSKR 85
G KN YGDAFIRGNNV+YI+ ++
Sbjct: 61 GVQKNSYGDAFIRGNNVMYITALEK 85
>gi|343426809|emb|CBQ70337.1| probable U6 snRNA-associated Sm-like protein LSm6 [Sporisorium
reilianum SRZ2]
Length = 80
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 61/72 (84%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
+P DFLK + G+ V V+LNSG+DYRG+L+CLDGYMNIA+EQT EYV+G KN YGDAFIR
Sbjct: 9 SPNDFLKGVIGKSVNVRLNSGIDYRGVLSCLDGYMNIALEQTVEYVDGVQKNSYGDAFIR 68
Query: 74 GNNVLYISTSKR 85
GNNV+YI+ ++
Sbjct: 69 GNNVMYITALEK 80
>gi|67624411|ref|XP_668488.1| Sm protein F [Cryptosporidium hominis TU502]
gi|54659686|gb|EAL38252.1| Sm protein F [Cryptosporidium hominis]
Length = 84
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 59/73 (80%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K+P+DFL+ + G PV+V+LNSGVDY+G+LACLD MNIAME TEEYV+G +GD FI
Sbjct: 12 KSPSDFLRQVIGSPVIVRLNSGVDYKGLLACLDDRMNIAMEDTEEYVDGVFVENHGDTFI 71
Query: 73 RGNNVLYISTSKR 85
RGNNVLYIS+ +
Sbjct: 72 RGNNVLYISSPPK 84
>gi|209879862|ref|XP_002141371.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556977|gb|EEA07022.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 85
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 45/70 (64%), Positives = 60/70 (85%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+ P+DFL+ + G+PV+V+LNSG+DY+GILACLD MNIAME T+E+VNG L ++GD FI
Sbjct: 10 QNPSDFLRQVIGKPVIVRLNSGIDYKGILACLDDRMNIAMEDTKEFVNGSLVEQHGDTFI 69
Query: 73 RGNNVLYIST 82
RGNNVLYI++
Sbjct: 70 RGNNVLYIAS 79
>gi|66362830|ref|XP_628381.1| small nuclear ribonucleo protein [Cryptosporidium parvum Iowa II]
gi|46229796|gb|EAK90614.1| small nuclear ribonucleo protein [Cryptosporidium parvum Iowa II]
Length = 93
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 59/73 (80%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K+P+DFL+ + G PV+V+LNSGVDY+G+LACLD MNIAME TEEYV+G +GD FI
Sbjct: 21 KSPSDFLRQVIGSPVIVRLNSGVDYKGLLACLDDRMNIAMEDTEEYVDGVFVENHGDTFI 80
Query: 73 RGNNVLYISTSKR 85
RGNNVLYIS+ +
Sbjct: 81 RGNNVLYISSPPK 93
>gi|392572202|gb|EIW65374.1| LSM-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 98
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 66/74 (89%)
Query: 11 TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
T+ +P DFLK + G+ VVV+L SGVDYRGIL+CLDGYMNIA+EQTEE+VNG++ NKYGDA
Sbjct: 23 TSGSPTDFLKGVVGKRVVVRLTSGVDYRGILSCLDGYMNIALEQTEEHVNGRVTNKYGDA 82
Query: 71 FIRGNNVLYISTSK 84
FIRGNNVLYIS ++
Sbjct: 83 FIRGNNVLYISAAE 96
>gi|124513268|ref|XP_001349990.1| Lsm6 homologue, putative [Plasmodium falciparum 3D7]
gi|23615407|emb|CAD52398.1| Lsm6 homologue, putative [Plasmodium falciparum 3D7]
Length = 77
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/70 (64%), Positives = 60/70 (85%)
Query: 11 TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
+T +P DF++S++GR V+V+LN+G DY+GILACLD MN+A+EQTEEY +G+L +KY DA
Sbjct: 2 STNSPKDFVESLKGRAVIVRLNNGTDYKGILACLDERMNVALEQTEEYYDGELTDKYNDA 61
Query: 71 FIRGNNVLYI 80
FIRGNNV YI
Sbjct: 62 FIRGNNVFYI 71
>gi|66819863|ref|XP_643590.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74857296|sp|Q552U1.1|LSM6_DICDI RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm6
gi|60471654|gb|EAL69610.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 88
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 56/69 (81%)
Query: 17 DFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNN 76
+F K GRPVVVKLN+GV+YRGIL +DG MNI MEQTEEY+NGQLK KYGD F+RGNN
Sbjct: 19 NFFKMCIGRPVVVKLNNGVEYRGILEVVDGNMNIVMEQTEEYLNGQLKTKYGDCFLRGNN 78
Query: 77 VLYISTSKR 85
VLYIS R
Sbjct: 79 VLYISAQPR 87
>gi|389750730|gb|EIM91803.1| LSM-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 102
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 65/79 (82%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK 66
+ S T +P DFLK + G+ VVV+L SGVDYRG+L+CLDGYMNIA+EQTEE+VNG + N+
Sbjct: 23 QASGPTGSPTDFLKGVVGKRVVVRLTSGVDYRGVLSCLDGYMNIALEQTEEHVNGAVTNR 82
Query: 67 YGDAFIRGNNVLYISTSKR 85
YGDAFIRGNNVLYIS +
Sbjct: 83 YGDAFIRGNNVLYISADEE 101
>gi|425770038|gb|EKV08513.1| hypothetical protein PDIP_68050 [Penicillium digitatum Pd1]
gi|425771729|gb|EKV10166.1| hypothetical protein PDIG_58570 [Penicillium digitatum PHI26]
Length = 80
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/71 (69%), Positives = 59/71 (83%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P+ FL I G PV+VKLNSGV Y+G L +DGYMNIA+E+TEEYVNG+L+ YGDAF+
Sbjct: 10 KDPSVFLSEIIGAPVIVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGKLRRNYGDAFV 69
Query: 73 RGNNVLYISTS 83
RGNNVLYIS+S
Sbjct: 70 RGNNVLYISSS 80
>gi|328868532|gb|EGG16910.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 95
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 61/84 (72%)
Query: 2 STGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNG 61
++GG S +F K GRPVVVKLN+GV+YRGIL +DG MNI MEQTEEY+NG
Sbjct: 11 ASGGAATSNNNNAQFNFFKMCIGRPVVVKLNNGVEYRGILEVVDGNMNIVMEQTEEYLNG 70
Query: 62 QLKNKYGDAFIRGNNVLYISTSKR 85
QLK KYGD F+RGNNVLYIS +
Sbjct: 71 QLKTKYGDCFLRGNNVLYISAQSK 94
>gi|212543325|ref|XP_002151817.1| U6 snRNA-associated Sm-like protein LSm6, putative [Talaromyces
marneffei ATCC 18224]
gi|210066724|gb|EEA20817.1| U6 snRNA-associated Sm-like protein LSm6, putative [Talaromyces
marneffei ATCC 18224]
Length = 80
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/69 (71%), Positives = 56/69 (81%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+TEEYVNGQL+ YGDAF+
Sbjct: 10 KDPSTFLSEITGAPVTVKLNSGVVYQGELQSVDGYMNIALEKTEEYVNGQLRRSYGDAFV 69
Query: 73 RGNNVLYIS 81
RGNNVLYIS
Sbjct: 70 RGNNVLYIS 78
>gi|449018375|dbj|BAM81777.1| U6 snRNA-associated Sm-like protein LSm6 [Cyanidioschyzon merolae
strain 10D]
Length = 99
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 64/83 (77%), Gaps = 2/83 (2%)
Query: 2 STGGE-KGSA-TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV 59
ST GE +G A T+TP FL+ + GRPVVVKLN+G +YRG L CLDGY+NI +E + E++
Sbjct: 14 STAGEYEGQAPATRTPTHFLRKVLGRPVVVKLNNGTEYRGTLVCLDGYLNIVLENSAEFL 73
Query: 60 NGQLKNKYGDAFIRGNNVLYIST 82
NG+LK +YGD +RG+NVLY+ T
Sbjct: 74 NGELKRRYGDTLLRGSNVLYVGT 96
>gi|154278836|ref|XP_001540231.1| hypothetical protein HCAG_04071 [Ajellomyces capsulatus NAm1]
gi|189028837|sp|A6R363.1|LSM6_AJECN RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|150412174|gb|EDN07561.1| hypothetical protein HCAG_04071 [Ajellomyces capsulatus NAm1]
gi|225554344|gb|EEH02643.1| LSM domain-containing protein [Ajellomyces capsulatus G186AR]
Length = 80
Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 6 EKGSATT-KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLK 64
E GSA+ K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+TEEYV+G+L+
Sbjct: 2 ENGSASEGKDPSAFLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLR 61
Query: 65 NKYGDAFIRGNNVLYIS 81
YGDAF+RGNNVLYIS
Sbjct: 62 RSYGDAFVRGNNVLYIS 78
>gi|354459633|pdb|3SWN|B Chain B, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
gi|354459636|pdb|3SWN|E Chain E, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
gi|354459639|pdb|3SWN|Q Chain Q, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
gi|354459642|pdb|3SWN|T Chain T, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
Length = 77
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 60/68 (88%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
+P +FL + G+ V+++L+SGVDY+GIL+CLDGYMN+A+E+TEEYVNG+ N YGDAFIR
Sbjct: 6 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIR 65
Query: 74 GNNVLYIS 81
GNNVLY+S
Sbjct: 66 GNNVLYVS 73
>gi|19115292|ref|NP_594380.1| U6 snRNP-associated protein Lsm6 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|10720076|sp|Q9UUI1.1|LSM6_SCHPO RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|5832405|emb|CAB54975.1| U6 snRNP-associated protein Lsm6 (predicted) [Schizosaccharomyces
pombe]
Length = 75
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 60/68 (88%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
+P +FL + G+ V+++L+SGVDY+GIL+CLDGYMN+A+E+TEEYVNG+ N YGDAFIR
Sbjct: 4 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIR 63
Query: 74 GNNVLYIS 81
GNNVLY+S
Sbjct: 64 GNNVLYVS 71
>gi|443926573|gb|ELU45190.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 143
Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 46/67 (68%), Positives = 58/67 (86%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
A +P DFLK++ G+ VVV+L SGVDY+G+L+CLDGYMNIAMEQTEE+VNG++ N+YGD
Sbjct: 51 AAGGSPTDFLKNVVGKRVVVRLTSGVDYQGVLSCLDGYMNIAMEQTEEHVNGRVTNRYGD 110
Query: 70 AFIRGNN 76
FIRGNN
Sbjct: 111 TFIRGNN 117
>gi|407921547|gb|EKG14689.1| hypothetical protein MPH_08162 [Macrophomina phaseolina MS6]
Length = 80
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 59/77 (76%)
Query: 6 EKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 65
E G++ K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+EQT+EYV G+L+
Sbjct: 2 ENGASDAKDPSGFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEQTKEYVEGKLRR 61
Query: 66 KYGDAFIRGNNVLYIST 82
YGDAF+RGNNV+YIS
Sbjct: 62 NYGDAFVRGNNVMYISA 78
>gi|378725534|gb|EHY51993.1| U6 snRNA-associated Sm-like protein LSm6 [Exophiala dermatitidis
NIH/UT8656]
Length = 80
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 58/74 (78%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S +K PA FL SI G PV VKLNSGV Y+G L +DGYMNIA+E+ EYVNGQL+ YG
Sbjct: 6 SGDSKDPASFLSSIIGVPVTVKLNSGVVYKGELQSVDGYMNIALEKCAEYVNGQLRRNYG 65
Query: 69 DAFIRGNNVLYIST 82
DAF+RGNNVLYI++
Sbjct: 66 DAFVRGNNVLYIAS 79
>gi|397639780|gb|EJK73758.1| hypothetical protein THAOC_04600 [Thalassiosira oceanica]
Length = 104
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 60/87 (68%), Gaps = 23/87 (26%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRG-----------------------ILACLDGYMN 49
++P+DFLK++ GR VVV+LNSG DY+G +LACLDGYMN
Sbjct: 11 RSPSDFLKAVLGRSVVVRLNSGTDYKGGKTGEARAASIDSKYSASPLLLGVLACLDGYMN 70
Query: 50 IAMEQTEEYVNGQLKNKYGDAFIRGNN 76
IAMEQTEEYV+GQLK+KYGD FIRGNN
Sbjct: 71 IAMEQTEEYVDGQLKSKYGDCFIRGNN 97
>gi|395326114|gb|EJF58527.1| like-Sm ribonucleo protein, partial [Dichomitus squalens LYAD-421
SS1]
Length = 75
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/71 (73%), Positives = 64/71 (90%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
+P DFLK + G+ VVV+L SGVDYRGIL+CLDGYMNIA+EQTEE+VNG++ N+YGDAFIR
Sbjct: 3 SPTDFLKGVVGKRVVVRLTSGVDYRGILSCLDGYMNIALEQTEEHVNGRVTNRYGDAFIR 62
Query: 74 GNNVLYISTSK 84
GNNVLYIS ++
Sbjct: 63 GNNVLYISAAE 73
>gi|296805353|ref|XP_002843501.1| LSM domain-containing protein [Arthroderma otae CBS 113480]
gi|238844803|gb|EEQ34465.1| LSM domain-containing protein [Arthroderma otae CBS 113480]
Length = 80
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 58/73 (79%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S+ K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+TEEYVNG+++ YG
Sbjct: 6 SSEGKDPSAFLGEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGKMRRSYG 65
Query: 69 DAFIRGNNVLYIS 81
DAF+RGNNVLYIS
Sbjct: 66 DAFVRGNNVLYIS 78
>gi|393242672|gb|EJD50189.1| like-Sm ribonucleo protein, partial [Auricularia delicata
TFB-10046 SS5]
Length = 63
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/63 (71%), Positives = 56/63 (88%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
+P DFLK++ G+ VVV+L SGVDY+G+L+CLDGYMNIA+EQT E+VNG + NKYGDAFIR
Sbjct: 1 SPTDFLKAVVGKRVVVRLVSGVDYKGVLSCLDGYMNIALEQTVEHVNGNVTNKYGDAFIR 60
Query: 74 GNN 76
GNN
Sbjct: 61 GNN 63
>gi|449550266|gb|EMD41230.1| hypothetical protein CERSUDRAFT_109849 [Ceriporiopsis
subvermispora B]
Length = 100
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 64/73 (87%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
T +P DFLK + G+ VVV+L SGVDYRG+L+CLDGYMNIA+EQTEE+VNG + N+YGDAF
Sbjct: 26 TGSPTDFLKGVVGKRVVVRLTSGVDYRGLLSCLDGYMNIALEQTEEHVNGLVTNRYGDAF 85
Query: 72 IRGNNVLYISTSK 84
IRGNNVLYIS ++
Sbjct: 86 IRGNNVLYISAAE 98
>gi|71004746|ref|XP_757039.1| hypothetical protein UM00892.1 [Ustilago maydis 521]
gi|46096843|gb|EAK82076.1| hypothetical protein UM00892.1 [Ustilago maydis 521]
Length = 82
Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/78 (60%), Positives = 60/78 (76%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
MS ++ +A +P DFLK + G+ V V+LNSG+DYRG+L+CLDGYMNIA+EQT EYV+
Sbjct: 1 MSAAAQQPNAKAGSPNDFLKGVIGKNVNVRLNSGIDYRGVLSCLDGYMNIALEQTVEYVD 60
Query: 61 GQLKNKYGDAFIRGNNVL 78
G KN YGDAFIR +N L
Sbjct: 61 GIKKNSYGDAFIRASNSL 78
>gi|315045632|ref|XP_003172191.1| LSM domain-containing protein [Arthroderma gypseum CBS 118893]
gi|327304531|ref|XP_003236957.1| U6 snRNA-associated Sm-like protein LSm6 [Trichophyton rubrum CBS
118892]
gi|311342577|gb|EFR01780.1| LSM domain-containing protein [Arthroderma gypseum CBS 118893]
gi|326459955|gb|EGD85408.1| U6 snRNA-associated Sm-like protein LSm6 [Trichophyton rubrum CBS
118892]
gi|326472909|gb|EGD96918.1| U6 snRNA-associated Sm-like protein LSm6 [Trichophyton tonsurans
CBS 112818]
Length = 80
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 56/69 (81%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+TEEYVNG+++ YGDAF+
Sbjct: 10 KDPSAFLGEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGKMRRSYGDAFV 69
Query: 73 RGNNVLYIS 81
RGNNVLYIS
Sbjct: 70 RGNNVLYIS 78
>gi|326477395|gb|EGE01405.1| U6 snRNA-associated Sm-like protein LSm6 [Trichophyton equinum
CBS 127.97]
Length = 80
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 56/69 (81%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+TEEYVNG+++ YGDAF+
Sbjct: 10 KDPSAFLGEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGKMRRSYGDAFV 69
Query: 73 RGNNVLYIS 81
RGNNVLYIS
Sbjct: 70 RGNNVLYIS 78
>gi|296425521|ref|XP_002842289.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638552|emb|CAZ86480.1| unnamed protein product [Tuber melanosporum]
Length = 80
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 57/70 (81%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
T P+ FL I G P+ VKLNSGV+Y+G L+ +DGYMNIA+E+T EYV GQ++N+YGD F
Sbjct: 7 TSDPSTFLSEIIGAPITVKLNSGVEYKGELSSVDGYMNIALEKTVEYVGGQVRNRYGDVF 66
Query: 72 IRGNNVLYIS 81
IRGNNVLYIS
Sbjct: 67 IRGNNVLYIS 76
>gi|299740542|ref|XP_001833825.2| hypothetical protein CC1G_01502 [Coprinopsis cinerea
okayama7#130]
gi|189028857|sp|A8NHT8.2|LSM6_COPC7 RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|298404296|gb|EAU87855.2| hypothetical protein CC1G_01502 [Coprinopsis cinerea
okayama7#130]
Length = 95
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 63/73 (86%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
T +P DFLK + G+ VVV+L SGVDYRGIL+CLDGYMNIAMEQTEE VNG++ N+YGDAF
Sbjct: 21 TGSPTDFLKGVVGKRVVVRLLSGVDYRGILSCLDGYMNIAMEQTEESVNGKVVNRYGDAF 80
Query: 72 IRGNNVLYISTSK 84
IRGNNVLYIS +
Sbjct: 81 IRGNNVLYISADE 93
>gi|390981168|pdb|4EMK|B Chain B, Crystal Structure Of Splsm567
Length = 75
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 59/68 (86%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
+P +FL + G+ V+++L+SGVDY+GIL+CLDGY N+A+E+TEEYVNG+ N YGDAFIR
Sbjct: 4 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYXNLALERTEEYVNGKKTNVYGDAFIR 63
Query: 74 GNNVLYIS 81
GNNVLY+S
Sbjct: 64 GNNVLYVS 71
>gi|409050774|gb|EKM60250.1| hypothetical protein PHACADRAFT_75901, partial [Phanerochaete
carnosa HHB-10118-sp]
Length = 71
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 63/71 (88%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
+P DFLK + G+ VVV+L SGVDYRG+L+CLDGYMNIA+EQTEE+VNG + N+YGDAFIR
Sbjct: 1 SPTDFLKGVVGKRVVVRLTSGVDYRGVLSCLDGYMNIALEQTEEHVNGVVTNRYGDAFIR 60
Query: 74 GNNVLYISTSK 84
GNNVLYIS ++
Sbjct: 61 GNNVLYISAAE 71
>gi|317145212|ref|XP_003189687.1| U6 snRNA-associated Sm-like protein LSm6 [Aspergillus oryzae
RIB40]
Length = 80
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/79 (63%), Positives = 61/79 (77%), Gaps = 1/79 (1%)
Query: 6 EKGSATT-KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLK 64
E SA+ K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E++EEYVNG+L+
Sbjct: 2 ENSSASEGKDPSVFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEKSEEYVNGKLR 61
Query: 65 NKYGDAFIRGNNVLYISTS 83
YGDAF+RGNNVLYIS +
Sbjct: 62 RSYGDAFVRGNNVLYISAN 80
>gi|401884862|gb|EJT49000.1| u6 snRNA-associated sm-like protein lsm6 [Trichosporon asahii
var. asahii CBS 2479]
gi|406694421|gb|EKC97748.1| u6 snRNA-associated sm-like protein lsm6 [Trichosporon asahii
var. asahii CBS 8904]
Length = 91
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 57/69 (82%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
+P+DFLK+I G+ V V++ SG+DY G+L CLDGYMN+A+E+TEE+ G+L KYGD F+R
Sbjct: 19 SPSDFLKNIVGKKVKVRIGSGIDYHGLLTCLDGYMNVALEETEEWAQGRLIAKYGDTFLR 78
Query: 74 GNNVLYIST 82
GNNVLYIS
Sbjct: 79 GNNVLYISA 87
>gi|294884790|gb|ADF47410.1| Sm-like-6 protein [Dugesia japonica]
Length = 76
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 55/68 (80%), Gaps = 1/68 (1%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
+ + P+DFLK+I +PV+VKLN G DYRG+L LDGYMN+ +EQTEEYVNGQLKNKY
Sbjct: 2 SKKQNPSDFLKAISDKPVLVKLNRPGADYRGVLVSLDGYMNLMLEQTEEYVNGQLKNKYN 61
Query: 69 DAFIRGNN 76
D FIRGNN
Sbjct: 62 DTFIRGNN 69
>gi|242786335|ref|XP_002480785.1| U6 snRNA-associated Sm-like protein LSm6, putative [Talaromyces
stipitatus ATCC 10500]
gi|218720932|gb|EED20351.1| U6 snRNA-associated Sm-like protein LSm6, putative [Talaromyces
stipitatus ATCC 10500]
Length = 80
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 55/69 (79%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+TEEYVNGQL+ YGD F+
Sbjct: 10 KDPSTFLGEITGAPVTVKLNSGVVYQGELQSVDGYMNIALEKTEEYVNGQLRRSYGDTFV 69
Query: 73 RGNNVLYIS 81
RGNNVLYI+
Sbjct: 70 RGNNVLYIA 78
>gi|357458899|ref|XP_003599730.1| U6 snRNA-associated Sm-like protein LSm6 [Medicago truncatula]
gi|357474717|ref|XP_003607643.1| U6 snRNA-associated Sm-like protein LSm6 [Medicago truncatula]
gi|358345437|ref|XP_003636784.1| U6 snRNA-associated Sm-like protein LSm6 [Medicago truncatula]
gi|355488778|gb|AES69981.1| U6 snRNA-associated Sm-like protein LSm6 [Medicago truncatula]
gi|355502719|gb|AES83922.1| U6 snRNA-associated Sm-like protein LSm6 [Medicago truncatula]
gi|355508698|gb|AES89840.1| U6 snRNA-associated Sm-like protein LSm6 [Medicago truncatula]
Length = 196
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/63 (80%), Positives = 52/63 (82%), Gaps = 11/63 (17%)
Query: 40 ILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNN-----------VLYISTSKRTLA 88
ILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNN VLYISTSKRTLA
Sbjct: 134 ILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNEIIEYFVFFDAVLYISTSKRTLA 193
Query: 89 DGA 91
+GA
Sbjct: 194 EGA 196
>gi|308812352|ref|XP_003083483.1| putative Sm protein F (ISS) [Ostreococcus tauri]
gi|116055364|emb|CAL58032.1| putative Sm protein F (ISS) [Ostreococcus tauri]
Length = 173
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 65/116 (56%), Gaps = 48/116 (41%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRG--------ILACLDGYMNIAMEQTE--------- 56
+P+DFL++I G+ V+V+LNSG DYRG +LACLDGYMNIAMEQTE
Sbjct: 54 SPSDFLRAIEGKTVLVRLNSGADYRGARSRRSIGVLACLDGYMNIAMEQTEDSTTRARRV 113
Query: 57 ------------------EYVNGQLKNKYGDAFIRGNN-------------VLYIS 81
EYVNGQLKNKYGDAFIRGNN VLYIS
Sbjct: 114 GRARDATRLTMACTLDAQEYVNGQLKNKYGDAFIRGNNDRRLTRERLSIDAVLYIS 169
>gi|189028863|sp|Q2HAN0.2|LSM6_CHAGB RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 82
Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 50/80 (62%), Positives = 59/80 (73%), Gaps = 3/80 (3%)
Query: 6 EKGSATT---KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQ 62
E G+AT K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+TEEYVNG
Sbjct: 2 ENGAATQGEGKDPSGFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGA 61
Query: 63 LKNKYGDAFIRGNNVLYIST 82
+ YGDAF+RGNNV+YIS
Sbjct: 62 KRRSYGDAFVRGNNVMYISA 81
>gi|119184466|ref|XP_001243137.1| hypothetical protein CIMG_07033 [Coccidioides immitis RS]
gi|303320391|ref|XP_003070195.1| U6 snRNA-associated Sm-like protein LSm6, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|121931667|sp|Q1DRN0.1|LSM6_COCIM RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|240109881|gb|EER28050.1| U6 snRNA-associated Sm-like protein LSm6, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320041261|gb|EFW23194.1| U6 snRNA-associated Sm-like protein LSm6 [Coccidioides posadasii
str. Silveira]
gi|392866021|gb|EAS31886.2| U6 snRNA-associated Sm-like protein LSm6 [Coccidioides immitis
RS]
Length = 80
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 59/75 (78%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK 66
+G+A ++ P+ FL I G V VKLNSGV Y+G L +DGYMNIA+E+T+E+VNG+L+
Sbjct: 4 RGAADSQDPSAFLSGITGASVTVKLNSGVVYKGELQSIDGYMNIALEKTQEFVNGKLRKS 63
Query: 67 YGDAFIRGNNVLYIS 81
YGD F+RGNNVLYIS
Sbjct: 64 YGDVFVRGNNVLYIS 78
>gi|189028850|sp|A1DM27.2|LSM6_NEOFI RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 80
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 58/74 (78%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S+ + P+ FL I G PV VKLNSGV YRG L +DGYMNIA+E++EE+V+G+L+ YG
Sbjct: 6 SSEGRDPSAFLGEIIGAPVTVKLNSGVVYRGELQSVDGYMNIALERSEEFVDGKLRRSYG 65
Query: 69 DAFIRGNNVLYIST 82
DAFIRGNNVLYIS
Sbjct: 66 DAFIRGNNVLYISA 79
>gi|322698480|gb|EFY90250.1| U6 snRNA-associated protein LSm6 [Metarhizium acridum CQMa 102]
Length = 86
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 61/83 (73%), Gaps = 3/83 (3%)
Query: 3 TGGEKGSATT---KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV 59
+ E GS + K P+ FL I G PV+VKLNSGV Y+G L +DGYMNIA+E+TEE++
Sbjct: 2 SSAENGSISQGEGKDPSSFLSDIIGNPVIVKLNSGVVYKGELQSVDGYMNIALEKTEEFI 61
Query: 60 NGQLKNKYGDAFIRGNNVLYIST 82
NG+ + YGDAF+RGNNV+YIS
Sbjct: 62 NGKKRRDYGDAFVRGNNVMYISA 84
>gi|326427782|gb|EGD73352.1| LSM domain-containing protein [Salpingoeca sp. ATCC 50818]
Length = 77
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/71 (63%), Positives = 56/71 (78%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P+DFLK I + VVVKLNSG+ + G LA LD +MN+A+E TEEYVNG+ KYGDAF+RG
Sbjct: 5 PSDFLKKIHRQKVVVKLNSGITFTGRLAALDAFMNVALEDTEEYVNGKQTAKYGDAFVRG 64
Query: 75 NNVLYISTSKR 85
NNVLYIS ++
Sbjct: 65 NNVLYISPAEE 75
>gi|189028860|sp|Q4WNI0.2|LSM6_ASPFU RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 80
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 58/74 (78%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S+ + P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E++EE+V+G+LK YG
Sbjct: 6 SSEGRDPSAFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALERSEEFVDGKLKRSYG 65
Query: 69 DAFIRGNNVLYIST 82
DAFIRGNNVLYIS
Sbjct: 66 DAFIRGNNVLYISA 79
>gi|408398664|gb|EKJ77793.1| hypothetical protein FPSE_02027 [Fusarium pseudograminearum
CS3096]
Length = 82
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 56/70 (80%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P+ FL +I G PV VKLNSGV Y+G L +DGYMNIA+E+T EYVNGQ + +YGDAF+
Sbjct: 12 KDPSSFLGNIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTSEYVNGQKRREYGDAFV 71
Query: 73 RGNNVLYIST 82
RGNNV+YIS
Sbjct: 72 RGNNVMYISA 81
>gi|310793377|gb|EFQ28838.1| LSM domain-containing protein [Glomerella graminicola M1.001]
gi|380486548|emb|CCF38632.1| U6 snRNA-associated Sm-like protein LSm6 [Colletotrichum
higginsianum]
Length = 83
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 54/70 (77%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+TEEYVNG + YGDAF+
Sbjct: 12 KDPSSFLSDIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGAKRRSYGDAFV 71
Query: 73 RGNNVLYIST 82
RGNNV+YIS
Sbjct: 72 RGNNVMYISA 81
>gi|367020370|ref|XP_003659470.1| hypothetical protein MYCTH_2115074 [Myceliophthora thermophila
ATCC 42464]
gi|347006737|gb|AEO54225.1| hypothetical protein MYCTH_2115074 [Myceliophthora thermophila
ATCC 42464]
Length = 83
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 56/81 (69%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
M G S K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+TEEYVN
Sbjct: 1 MENGAATQSGEGKDPSSFLGEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVN 60
Query: 61 GQLKNKYGDAFIRGNNVLYIS 81
G + YGD F+RGNNV+YIS
Sbjct: 61 GTKRRTYGDTFVRGNNVMYIS 81
>gi|68074967|ref|XP_679400.1| u6 snRNA-associated sm-like protein [Plasmodium berghei strain
ANKA]
gi|56500140|emb|CAH93764.1| u6 snRNA-associated sm-like protein, putative [Plasmodium
berghei]
Length = 77
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 57/70 (81%)
Query: 11 TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
++ +P F++S++GR V+V+LN+G DY+GILACLD MN+ +EQTEEY +G+L KY DA
Sbjct: 2 SSNSPKYFVQSLKGRTVIVRLNNGADYKGILACLDERMNVTLEQTEEYFDGELIEKYNDA 61
Query: 71 FIRGNNVLYI 80
FIRGNNV YI
Sbjct: 62 FIRGNNVFYI 71
>gi|392574530|gb|EIW67666.1| hypothetical protein TREMEDRAFT_20231, partial [Tremella
mesenterica DSM 1558]
Length = 77
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 55/68 (80%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
+P+DFLK+I G+ V V++ G+DY G+L CLDGYMN+A+E+TEE+VNG YGD F+R
Sbjct: 5 SPSDFLKNIVGKRVKVRVGKGIDYHGLLTCLDGYMNVALEETEEWVNGHRVTTYGDCFLR 64
Query: 74 GNNVLYIS 81
GNNVLYIS
Sbjct: 65 GNNVLYIS 72
>gi|453082226|gb|EMF10274.1| LSM domain-containing protein [Mycosphaerella populorum SO2202]
Length = 93
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 59/81 (72%)
Query: 2 STGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNG 61
+ G +A ++ P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E T+E+V G
Sbjct: 9 TNGAAASAAESRDPSGFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEDTKEFVEG 68
Query: 62 QLKNKYGDAFIRGNNVLYIST 82
+++ YGDAF+RGNNV+YIS
Sbjct: 69 KMRRNYGDAFVRGNNVMYISA 89
>gi|443895494|dbj|GAC72840.1| small nuclear ribonucleoprotein F [Pseudozyma antarctica T-34]
Length = 90
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 55/68 (80%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S+ +P DFLK + G+ V V+LNSG+DY+G+L+CLDGYMNIA+E T EYV+G KN YG
Sbjct: 6 SSKAGSPNDFLKGVIGKSVNVRLNSGIDYQGVLSCLDGYMNIALENTTEYVDGVKKNNYG 65
Query: 69 DAFIRGNN 76
DAFIRGNN
Sbjct: 66 DAFIRGNN 73
>gi|225680789|gb|EEH19073.1| conserved hypothetical protein [Paracoccidioides brasiliensis
Pb03]
gi|226292484|gb|EEH47904.1| LSM domain-containing protein [Paracoccidioides brasiliensis
Pb18]
Length = 94
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 61/83 (73%)
Query: 6 EKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 65
E G++ K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+TEEYV+G+L+
Sbjct: 2 ENGASEGKDPSAFLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLRR 61
Query: 66 KYGDAFIRGNNVLYISTSKRTLA 88
YGDAF+RGNN + ST + + A
Sbjct: 62 SYGDAFVRGNNGIIHSTFQTSHA 84
>gi|82753616|ref|XP_727750.1| probable u6 snRNA-associated sm-like protein lsm6 [Plasmodium
yoelii yoelii 17XNL]
gi|23483747|gb|EAA19315.1| probable u6 snRNA-associated sm-like protein lsm6 [Plasmodium
yoelii yoelii]
Length = 77
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 57/70 (81%)
Query: 11 TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
++ +P F++S++GR V+V+LN+G DY+GILACLD MN+ +EQTEEY +G+L KY DA
Sbjct: 2 SSNSPKYFVQSLKGRTVIVRLNNGSDYKGILACLDERMNVTLEQTEEYFDGELIEKYNDA 61
Query: 71 FIRGNNVLYI 80
FIRGNNV YI
Sbjct: 62 FIRGNNVFYI 71
>gi|413936988|gb|AFW71539.1| hypothetical protein ZEAMMB73_795769 [Zea mays]
Length = 67
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/50 (92%), Positives = 48/50 (96%)
Query: 39 GILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLA 88
GILACLDGYMNIAM+QTEEYVNGQLKNKYGDAFIRGN+VLYIS KRTLA
Sbjct: 16 GILACLDGYMNIAMQQTEEYVNGQLKNKYGDAFIRGNDVLYISIFKRTLA 65
>gi|429859545|gb|ELA34324.1| u6 snrna-associated sm-like protein lsm6 [Colletotrichum
gloeosporioides Nara gc5]
Length = 83
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 54/70 (77%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+TEEYVNG + YGDAF+
Sbjct: 12 KDPSSFLSDIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGVKRRAYGDAFV 71
Query: 73 RGNNVLYIST 82
RGNNV+YIS
Sbjct: 72 RGNNVMYISA 81
>gi|156099234|ref|XP_001615619.1| U6 snRNA-associated Sm-like protein LSm6 [Plasmodium vivax Sal-1]
gi|148804493|gb|EDL45892.1| U6 snRNA-associated Sm-like protein LSm6, putative [Plasmodium
vivax]
Length = 77
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 57/70 (81%)
Query: 11 TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
++ +P DF++S++GR V+V+LN+G D++GILACLD MN+A+EQTEE+ G+L Y DA
Sbjct: 2 SSNSPKDFVESLKGRVVIVRLNNGSDFKGILACLDERMNVALEQTEEFFEGELVESYYDA 61
Query: 71 FIRGNNVLYI 80
FIRGNNV YI
Sbjct: 62 FIRGNNVFYI 71
>gi|380090691|emb|CCC04861.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 82
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 45/69 (65%), Positives = 54/69 (78%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+TEEY+NG + YGDAF+
Sbjct: 12 KDPSGFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYINGVKRRSYGDAFV 71
Query: 73 RGNNVLYIS 81
RGNNV+YIS
Sbjct: 72 RGNNVMYIS 80
>gi|346322201|gb|EGX91800.1| U6 snRNA-associated Sm-like protein LSm6, putative [Cordyceps
militaris CM01]
Length = 81
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 56/70 (80%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P+ FL I G PV+VKLNSGV Y+G L +DGYMNIA+E+T+E+VNG + +YGDAF+
Sbjct: 10 KDPSSFLSDIIGNPVIVKLNSGVVYKGELQSVDGYMNIALEKTQEFVNGVKRKEYGDAFV 69
Query: 73 RGNNVLYIST 82
RGNNV+YIS
Sbjct: 70 RGNNVMYISA 79
>gi|320585945|gb|EFW98624.1| lsm domain containing protein [Grosmannia clavigera kw1407]
Length = 84
Score = 97.4 bits (241), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 57/84 (67%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
M G A P+ FL I G PVVVKLNSGV Y+G L +DGYMNIA+E+T EYVN
Sbjct: 1 MENGTAGSQAEGTDPSAFLSEIIGSPVVVKLNSGVVYKGELQSVDGYMNIALEKTAEYVN 60
Query: 61 GQLKNKYGDAFIRGNNVLYISTSK 84
G + YGDAF+RGNNV+YIS +
Sbjct: 61 GVKRRTYGDAFVRGNNVMYISADE 84
>gi|367043476|ref|XP_003652118.1| hypothetical protein THITE_2170099 [Thielavia terrestris NRRL
8126]
gi|346999380|gb|AEO65782.1| hypothetical protein THITE_2170099 [Thielavia terrestris NRRL
8126]
Length = 82
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 58/79 (73%), Gaps = 3/79 (3%)
Query: 6 EKGSATT---KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQ 62
E G+ T K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+TEEYV+G
Sbjct: 2 ENGTGTQGEGKDPSGFLSEIIGHPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGV 61
Query: 63 LKNKYGDAFIRGNNVLYIS 81
+ YGDAF+RGNNV+YIS
Sbjct: 62 KRRSYGDAFVRGNNVMYIS 80
>gi|325089253|gb|EGC42563.1| LSM domain-containing protein [Ajellomyces capsulatus H88]
Length = 95
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 58/74 (78%), Gaps = 1/74 (1%)
Query: 6 EKGSATT-KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLK 64
E GSA+ K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+TEEYV+G+L+
Sbjct: 2 ENGSASEGKDPSAFLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLR 61
Query: 65 NKYGDAFIRGNNVL 78
YGDAF+RGNNV+
Sbjct: 62 RSYGDAFVRGNNVV 75
>gi|240273226|gb|EER36748.1| LSM domain-containing protein [Ajellomyces capsulatus H143]
Length = 95
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 58/74 (78%), Gaps = 1/74 (1%)
Query: 6 EKGSATT-KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLK 64
E GSA+ K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+TEEYV+G+L+
Sbjct: 2 ENGSASEGKDPSAFLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLR 61
Query: 65 NKYGDAFIRGNNVL 78
YGDAF+RGNNV+
Sbjct: 62 RSYGDAFVRGNNVV 75
>gi|345326618|ref|XP_003431064.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Ornithorhynchus anatinus]
Length = 54
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/49 (89%), Positives = 47/49 (95%)
Query: 39 GILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL 87
G+LACLDGYMNIA+EQTEEYVNGQLKNKYGDAFIRGNNVLYIST KR +
Sbjct: 6 GVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRM 54
>gi|259484712|tpe|CBF81168.1| TPA: U6 snRNA-associated Sm-like protein LSm6, putative
(AFU_orthologue; AFUA_6G06325) [Aspergillus nidulans
FGSC A4]
Length = 80
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/71 (63%), Positives = 56/71 (78%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+++E+V+GQL YGDAFI
Sbjct: 10 KDPSAFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEKSQEFVSGQLTRSYGDAFI 69
Query: 73 RGNNVLYISTS 83
RGNNVLYI+ +
Sbjct: 70 RGNNVLYIAAN 80
>gi|70951963|ref|XP_745182.1| u6 snRNA-associated sm-like protein [Plasmodium chabaudi
chabaudi]
gi|56525424|emb|CAH79798.1| u6 snRNA-associated sm-like protein, putative [Plasmodium
chabaudi chabaudi]
Length = 77
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 57/70 (81%)
Query: 11 TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
++ +P F++S++G+ V+V+LN+G DY+GILACLD MN+ +EQTEEY +G+L KY DA
Sbjct: 2 SSNSPKYFVQSLKGKTVIVRLNNGSDYKGILACLDERMNVTLEQTEEYFDGELIEKYNDA 61
Query: 71 FIRGNNVLYI 80
FIRGNNV YI
Sbjct: 62 FIRGNNVFYI 71
>gi|189028859|sp|A1CE19.2|LSM6_ASPCL RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 78
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 59/77 (76%)
Query: 6 EKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 65
E S+ + P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+EQ++E+++G+L+
Sbjct: 2 ENISSEGRDPSAFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEQSKEFMDGKLRR 61
Query: 66 KYGDAFIRGNNVLYIST 82
YGDAFIRGNNVLYI+
Sbjct: 62 SYGDAFIRGNNVLYIAA 78
>gi|400603112|gb|EJP70710.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 81
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 56/70 (80%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P+ FL I G PV+VKLNSGV Y+G L +DGYMNIA+E+T+E+VNG + +YGDAF+
Sbjct: 10 KDPSSFLGDIIGNPVIVKLNSGVVYKGELQSVDGYMNIALEKTQEFVNGVKRREYGDAFV 69
Query: 73 RGNNVLYIST 82
RGNNV+YIS
Sbjct: 70 RGNNVMYISA 79
>gi|452837704|gb|EME39646.1| hypothetical protein DOTSEDRAFT_66594 [Dothistroma septosporum
NZE10]
Length = 91
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/78 (60%), Positives = 58/78 (74%), Gaps = 2/78 (2%)
Query: 5 GEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLK 64
G +G A + P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E T+EYV G+L+
Sbjct: 11 GAEGDA--RDPSGFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEDTKEYVEGKLR 68
Query: 65 NKYGDAFIRGNNVLYIST 82
YGDAF+RGNNV+YIS
Sbjct: 69 RNYGDAFVRGNNVMYISA 86
>gi|189028851|sp|A7UXE4.2|LSM6_NEUCR RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|350296721|gb|EGZ77698.1| U6 snRNA-associated Sm-like protein LSm6 [Neurospora tetrasperma
FGSC 2509]
Length = 82
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 56/77 (72%)
Query: 5 GEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLK 64
G + K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+TEE++NG +
Sbjct: 4 GATSQSEGKDPSGFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEFINGVKR 63
Query: 65 NKYGDAFIRGNNVLYIS 81
YGDAF+RGNNV+YIS
Sbjct: 64 RSYGDAFVRGNNVMYIS 80
>gi|171680313|ref|XP_001905102.1| hypothetical protein [Podospora anserina S mat+]
gi|170939783|emb|CAP65009.1| unnamed protein product [Podospora anserina S mat+]
Length = 82
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 54/70 (77%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P+ +L I G PV VKLNSGV Y+G L +DGYMNIA+E+TEEYVNG + YGDAF+
Sbjct: 12 KDPSGWLSEIIGHPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGAKRRSYGDAFV 71
Query: 73 RGNNVLYIST 82
RGNNV+YI+
Sbjct: 72 RGNNVMYIAA 81
>gi|452980522|gb|EME80283.1| hypothetical protein MYCFIDRAFT_189882 [Pseudocercospora
fijiensis CIRAD86]
Length = 90
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 56/74 (75%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S + P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E ++E+V+G+L+ YG
Sbjct: 13 SGDARDPSGFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEDSKEFVDGKLRRNYG 72
Query: 69 DAFIRGNNVLYIST 82
DAFIRGNNV+YIS
Sbjct: 73 DAFIRGNNVMYISA 86
>gi|221058891|ref|XP_002260091.1| u6 snRNA-associated sm-like protein [Plasmodium knowlesi strain
H]
gi|193810164|emb|CAQ41358.1| u6 snRNA-associated sm-like protein, putative [Plasmodium
knowlesi strain H]
Length = 77
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 56/70 (80%)
Query: 11 TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
++ +P DF++S++GR V+V+LN+G D++GILACLD MN+A+EQTEE+ G+ Y DA
Sbjct: 2 SSNSPKDFVQSLKGRVVIVRLNNGSDFKGILACLDERMNVALEQTEEFFEGEFVGSYYDA 61
Query: 71 FIRGNNVLYI 80
FIRGNNV YI
Sbjct: 62 FIRGNNVFYI 71
>gi|295672880|ref|XP_002796986.1| LSM domain-containing protein [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226282358|gb|EEH37924.1| LSM domain-containing protein [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 84
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 55/71 (77%)
Query: 6 EKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 65
E G++ K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+TEEYV+G+L+
Sbjct: 2 ENGASEGKDPSAFLTEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLRR 61
Query: 66 KYGDAFIRGNN 76
YGDAF+RGNN
Sbjct: 62 SYGDAFVRGNN 72
>gi|336464624|gb|EGO52864.1| hypothetical protein NEUTE1DRAFT_96889 [Neurospora tetrasperma
FGSC 2508]
Length = 82
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 56/77 (72%)
Query: 5 GEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLK 64
G + K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+TEE++NG +
Sbjct: 4 GATSQSEGKDPSGFLGEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEFINGVKR 63
Query: 65 NKYGDAFIRGNNVLYIS 81
YGDAF+RGNNV+YIS
Sbjct: 64 RSYGDAFVRGNNVMYIS 80
>gi|346978373|gb|EGY21825.1| LSM domain-containing protein [Verticillium dahliae VdLs.17]
Length = 84
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/69 (65%), Positives = 53/69 (76%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P+ FL I G V VKLNSGV Y+G L +DGYMNIA+E+TEEYVNG + YGDAF+
Sbjct: 14 KDPSSFLSDIIGNAVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGTKRRSYGDAFV 73
Query: 73 RGNNVLYIS 81
RGNNV+YIS
Sbjct: 74 RGNNVMYIS 82
>gi|255938622|ref|XP_002560081.1| Pc14g00870 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584702|emb|CAP74228.1| Pc14g00870 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 134
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 53/65 (81%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P+ FL I G PV+VKLNSGV Y+G L +DGYMNIA+E+TEEYVNG+L+ YGDAF+
Sbjct: 10 KDPSLFLSEIIGAPVIVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGKLRRNYGDAFV 69
Query: 73 RGNNV 77
RGNNV
Sbjct: 70 RGNNV 74
>gi|291001797|ref|XP_002683465.1| predicted protein [Naegleria gruberi]
gi|284097094|gb|EFC50721.1| predicted protein [Naegleria gruberi]
Length = 72
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/69 (65%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 9 SATTKTPADFLKS-IRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKY 67
SA P FLK+ I G+PV+VKLNSG +YRG+L CLDGYMN+A+EQT+EYV+G Y
Sbjct: 2 SANNLDPTTFLKNDIVGKPVIVKLNSGAEYRGVLTCLDGYMNVALEQTKEYVDGVQTGTY 61
Query: 68 GDAFIRGNN 76
GDAFIRGNN
Sbjct: 62 GDAFIRGNN 70
>gi|261201258|ref|XP_002627029.1| U6 snRNA-associated Sm-like protein LSm6 [Ajellomyces
dermatitidis SLH14081]
gi|239592088|gb|EEQ74669.1| U6 snRNA-associated Sm-like protein LSm6 [Ajellomyces
dermatitidis SLH14081]
gi|239611748|gb|EEQ88735.1| U6 snRNA-associated Sm-like protein LSm6 [Ajellomyces
dermatitidis ER-3]
gi|327348237|gb|EGE77094.1| LSM domain-containing protein [Ajellomyces dermatitidis ATCC
18188]
Length = 87
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 56/72 (77%), Gaps = 1/72 (1%)
Query: 6 EKGSATT-KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLK 64
E GSA+ K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+TEEYV+G+L+
Sbjct: 2 ENGSASEGKDPSAFLGEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLR 61
Query: 65 NKYGDAFIRGNN 76
YGDAF+RGNN
Sbjct: 62 RSYGDAFVRGNN 73
>gi|358379099|gb|EHK16780.1| hypothetical protein TRIVIDRAFT_184162 [Trichoderma virens
Gv29-8]
Length = 83
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
M GG A K P+ FL I G VVVKLNSGV Y+G L +DGYMNIA+E+T EYVN
Sbjct: 1 MENGG-ISQAEGKDPSSFLSDIIGNSVVVKLNSGVVYKGELQSVDGYMNIALEKTAEYVN 59
Query: 61 GQLKNKYGDAFIRGNNVLYIST 82
G + +YGD F+RGNNV+YIS
Sbjct: 60 GVKRREYGDTFVRGNNVMYISA 81
>gi|358391711|gb|EHK41115.1| hypothetical protein TRIATDRAFT_206714 [Trichoderma atroviride
IMI 206040]
Length = 83
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P+ FL I G VVVKLNSGV Y+G L +DGYMNIA+E+T EYVNG + +YGD F+
Sbjct: 12 KDPSSFLSDIIGNSVVVKLNSGVVYKGELQSVDGYMNIALEKTVEYVNGAKRREYGDTFV 71
Query: 73 RGNNVLYIS 81
RGNNV+YIS
Sbjct: 72 RGNNVMYIS 80
>gi|401406794|ref|XP_003882846.1| U6 snRNA-associated Sm-like protein LSm6,related [Neospora
caninum Liverpool]
gi|325117262|emb|CBZ52814.1| U6 snRNA-associated Sm-like protein LSm6,related [Neospora
caninum Liverpool]
Length = 82
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 56/74 (75%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K+P+DFL+ + G+ VVV+L++G DYRG+L CLD MNIAM++TEE+V+G YG + I
Sbjct: 7 KSPSDFLQKVIGQRVVVRLSNGTDYRGVLTCLDDRMNIAMDKTEEFVDGNFVAAYGLSLI 66
Query: 73 RGNNVLYISTSKRT 86
RGNNVLYIS T
Sbjct: 67 RGNNVLYISAVDET 80
>gi|402086460|gb|EJT81358.1| U6 snRNA-associated Sm-like protein LSm6 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 83
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/81 (58%), Positives = 56/81 (69%), Gaps = 3/81 (3%)
Query: 6 EKGSATT---KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQ 62
E G+ T K P FL I G V VKLNSGV Y+G L +DGYMNIA+E+ EE+V GQ
Sbjct: 2 ENGAMTQGEGKDPTSFLSDIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQ 61
Query: 63 LKNKYGDAFIRGNNVLYISTS 83
K YGDAF+RGNNV+YI+ S
Sbjct: 62 KKRSYGDAFVRGNNVMYIAAS 82
>gi|46107150|ref|XP_380634.1| hypothetical protein FG00458.1 [Gibberella zeae PH-1]
Length = 106
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 53/66 (80%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P+ FL +I G PV VKLNSGV Y+G L +DGYMNIA+E+T EYVNGQ + +YGDAF+
Sbjct: 12 KDPSSFLGNIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTAEYVNGQKRREYGDAFV 71
Query: 73 RGNNVL 78
RGNNV+
Sbjct: 72 RGNNVM 77
>gi|389625893|ref|XP_003710600.1| U6 snRNA-associated Sm-like protein LSm6 [Magnaporthe oryzae
70-15]
gi|189028839|sp|A4RQ29.1|LSM6_MAGO7 RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|351650129|gb|EHA57988.1| U6 snRNA-associated Sm-like protein LSm6 [Magnaporthe oryzae
70-15]
Length = 83
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/81 (58%), Positives = 56/81 (69%), Gaps = 3/81 (3%)
Query: 6 EKGSATT---KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQ 62
E G+ T K P FL I G V VKLNSGV Y+G L +DGYMNIA+E+ EE+V GQ
Sbjct: 2 ENGTMTQGEGKDPTSFLGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQ 61
Query: 63 LKNKYGDAFIRGNNVLYISTS 83
K YGDAF+RGNNV+YI+ S
Sbjct: 62 KKRSYGDAFVRGNNVMYIAAS 82
>gi|302501452|ref|XP_003012718.1| small nuclear ribonucleoprotein SmF, putative [Arthroderma
benhamiae CBS 112371]
gi|291176278|gb|EFE32078.1| small nuclear ribonucleoprotein SmF, putative [Arthroderma
benhamiae CBS 112371]
Length = 86
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 51/64 (79%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+TEEYVNG+++ YGDAF+
Sbjct: 10 KDPSAFLGEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGKMRRSYGDAFV 69
Query: 73 RGNN 76
RGNN
Sbjct: 70 RGNN 73
>gi|302666925|ref|XP_003025057.1| small nuclear ribonucleoprotein SmF, putative [Trichophyton
verrucosum HKI 0517]
gi|291189139|gb|EFE44446.1| small nuclear ribonucleoprotein SmF, putative [Trichophyton
verrucosum HKI 0517]
Length = 86
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 51/64 (79%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+TEEYVNG+++ YGDAF+
Sbjct: 10 KDPSAFLGEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGKMRRSYGDAFV 69
Query: 73 RGNN 76
RGNN
Sbjct: 70 RGNN 73
>gi|405123901|gb|AFR98664.1| hypothetical protein CNAG_06426 [Cryptococcus neoformans var.
grubii H99]
Length = 88
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 59/84 (70%), Gaps = 2/84 (2%)
Query: 1 MSTGGEKG--SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEY 58
MS+ G +G + +P++FL++I G+ V V++ SGVDY G+L CLDGYMN+A+EQ EE+
Sbjct: 1 MSSPGSQGEPQPVSGSPSEFLRNIVGKRVKVRIGSGVDYTGLLTCLDGYMNVALEQAEEW 60
Query: 59 VNGQLKNKYGDAFIRGNNVLYIST 82
YGD F+RGNNVLYIS
Sbjct: 61 AGEVKTAAYGDCFLRGNNVLYISA 84
>gi|242206420|ref|XP_002469066.1| predicted protein [Postia placenta Mad-698-R]
gi|220731931|gb|EED85771.1| predicted protein [Postia placenta Mad-698-R]
Length = 63
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/63 (73%), Positives = 56/63 (88%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
+P DFLK + G+ VVV+L SGVDYRG+L+CLDGYMNIA+EQTEE+VNG + N+YGDAFIR
Sbjct: 1 SPTDFLKGVVGKRVVVRLTSGVDYRGVLSCLDGYMNIALEQTEEHVNGAVTNRYGDAFIR 60
Query: 74 GNN 76
GNN
Sbjct: 61 GNN 63
>gi|116206862|ref|XP_001229240.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88183321|gb|EAQ90789.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 93
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 54/74 (72%), Gaps = 3/74 (4%)
Query: 6 EKGSATT---KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQ 62
E G+AT K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+TEEYVNG
Sbjct: 2 ENGAATQGEGKDPSGFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGA 61
Query: 63 LKNKYGDAFIRGNN 76
+ YGDAF+RGNN
Sbjct: 62 KRRSYGDAFVRGNN 75
>gi|121709856|ref|XP_001272544.1| LSM domain protein [Aspergillus clavatus NRRL 1]
gi|119400694|gb|EAW11118.1| LSM domain protein [Aspergillus clavatus NRRL 1]
Length = 108
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 57/76 (75%)
Query: 6 EKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 65
E S+ + P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+EQ++E+++G+L+
Sbjct: 2 ENISSEGRDPSAFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEQSKEFMDGKLRR 61
Query: 66 KYGDAFIRGNNVLYIS 81
YGDAFIRGNN LY S
Sbjct: 62 SYGDAFIRGNNGLYHS 77
>gi|330794780|ref|XP_003285455.1| hypothetical protein DICPUDRAFT_13870 [Dictyostelium purpureum]
gi|325084630|gb|EGC38054.1| hypothetical protein DICPUDRAFT_13870 [Dictyostelium purpureum]
Length = 63
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/60 (71%), Positives = 49/60 (81%)
Query: 17 DFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNN 76
+F K RPVVVKLN+GV+YRGIL +DG MNI MEQTEEY+NGQLK KYGD F+RGNN
Sbjct: 1 NFFKMCIRRPVVVKLNNGVEYRGILEVVDGNMNIVMEQTEEYLNGQLKTKYGDCFLRGNN 60
>gi|342889202|gb|EGU88369.1| hypothetical protein FOXB_01168 [Fusarium oxysporum Fo5176]
Length = 77
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 50/64 (78%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+T EYVNGQ + +YGDAF+
Sbjct: 12 KDPSSFLSDIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTAEYVNGQKRREYGDAFV 71
Query: 73 RGNN 76
RGNN
Sbjct: 72 RGNN 75
>gi|350630884|gb|EHA19256.1| hypothetical protein ASPNIDRAFT_202763 [Aspergillus niger ATCC
1015]
Length = 77
Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 53/70 (75%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S+ K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E++EE+VNG+L YG
Sbjct: 6 SSDGKDPSAFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEKSEEFVNGKLSRSYG 65
Query: 69 DAFIRGNNVL 78
DAFIRGNN L
Sbjct: 66 DAFIRGNNGL 75
>gi|119467878|ref|XP_001257745.1| LSM domain protein [Neosartorya fischeri NRRL 181]
gi|119405897|gb|EAW15848.1| LSM domain protein [Neosartorya fischeri NRRL 181]
Length = 98
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/70 (61%), Positives = 54/70 (77%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S+ + P+ FL I G PV VKLNSGV YRG L +DGYMNIA+E++EE+V+G+L+ YG
Sbjct: 6 SSEGRDPSAFLGEIIGAPVTVKLNSGVVYRGELQSVDGYMNIALERSEEFVDGKLRRSYG 65
Query: 69 DAFIRGNNVL 78
DAFIRGNN L
Sbjct: 66 DAFIRGNNGL 75
>gi|70991347|ref|XP_750522.1| U6 snRNA-associated Sm-like protein LSm6 [Aspergillus fumigatus
Af293]
gi|66848155|gb|EAL88484.1| U6 snRNA-associated Sm-like protein LSm6, putative [Aspergillus
fumigatus Af293]
gi|159124077|gb|EDP49195.1| U6 snRNA-associated Sm-like protein LSm6, putative [Aspergillus
fumigatus A1163]
Length = 98
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/70 (61%), Positives = 54/70 (77%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S+ + P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E++EE+V+G+LK YG
Sbjct: 6 SSEGRDPSAFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALERSEEFVDGKLKRSYG 65
Query: 69 DAFIRGNNVL 78
DAFIRGNN L
Sbjct: 66 DAFIRGNNGL 75
>gi|189028852|sp|Q0UWI9.2|LSM6_PHANO RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 89
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 59/86 (68%), Gaps = 4/86 (4%)
Query: 1 MSTGGE----KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTE 56
MST GE +G+ ++ P+ FL I G PV VKLNSG+ Y+G L +DGYMNIA+E+ +
Sbjct: 1 MSTNGESPAPEGAGDSRDPSGFLSEIIGAPVTVKLNSGIVYKGDLQSVDGYMNIALERCK 60
Query: 57 EYVNGQLKNKYGDAFIRGNNVLYIST 82
E G++ +GDAF+RGNNV YIS
Sbjct: 61 EVAEGRVIRNWGDAFVRGNNVTYISA 86
>gi|336272335|ref|XP_003350924.1| hypothetical protein SMAC_04229 [Sordaria macrospora k-hell]
Length = 93
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 54/80 (67%), Gaps = 11/80 (13%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILAC-----------LDGYMNIAMEQTEEYVNG 61
K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+TEEY+NG
Sbjct: 12 KDPSGFLSEIIGNPVTVKLNSGVVYKGRLGWGALGGTGELQSVDGYMNIALEKTEEYING 71
Query: 62 QLKNKYGDAFIRGNNVLYIS 81
+ YGDAF+RGNNV+YIS
Sbjct: 72 VKRRSYGDAFVRGNNVMYIS 91
>gi|321265650|ref|XP_003197541.1| u6 snRNA-associated sm-like protein lsm6 [Cryptococcus gattii
WM276]
gi|317464021|gb|ADV25754.1| u6 snRNA-associated sm-like protein lsm6, putative [Cryptococcus
gattii WM276]
Length = 88
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 59/77 (76%), Gaps = 2/77 (2%)
Query: 6 EKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 65
++ + +P++FL++I G+ V V++ SGVDY G+L CLDGYMN+A+EQ EE+ G++K
Sbjct: 8 DESQPISGSPSEFLRNIVGKRVKVRIGSGVDYTGVLTCLDGYMNVALEQAEEWA-GEVKT 66
Query: 66 K-YGDAFIRGNNVLYIS 81
YGD F+RGNNVLYIS
Sbjct: 67 AVYGDCFLRGNNVLYIS 83
>gi|189194007|ref|XP_001933342.1| LSM domain containing protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|330928710|ref|XP_003302375.1| hypothetical protein PTT_14152 [Pyrenophora teres f. teres 0-1]
gi|187978906|gb|EDU45532.1| LSM domain containing protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|311322339|gb|EFQ89540.1| hypothetical protein PTT_14152 [Pyrenophora teres f. teres 0-1]
Length = 89
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 59/84 (70%), Gaps = 4/84 (4%)
Query: 1 MSTGGE----KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTE 56
MST GE + +A ++ P+ FL I G PV VKLNSG+ Y+G L +DGYMNIA+E+ +
Sbjct: 1 MSTNGESPAPEAAADSRDPSGFLSEIIGAPVTVKLNSGIIYKGDLQSVDGYMNIALERCK 60
Query: 57 EYVNGQLKNKYGDAFIRGNNVLYI 80
E +G++ +GDAF+RGNNV YI
Sbjct: 61 EVADGRVTRNWGDAFVRGNNVTYI 84
>gi|361131665|gb|EHL03317.1| putative U6 snRNA-associated Sm-like protein LSm6 [Glarea
lozoyensis 74030]
Length = 106
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 56/79 (70%), Gaps = 3/79 (3%)
Query: 6 EKGSATT---KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQ 62
E G+AT + P+ FL I G V VKLNSGV Y+G L +DGYMNIA+E+TEE+VNG
Sbjct: 2 ENGTATQGEGRDPSGFLSEIIGSQVTVKLNSGVVYKGELQSVDGYMNIALEKTEEHVNGV 61
Query: 63 LKNKYGDAFIRGNNVLYIS 81
K YGDAF+RGNN + IS
Sbjct: 62 KKRSYGDAFVRGNNGVRIS 80
>gi|58262422|ref|XP_568621.1| u6 snRNA-associated sm-like protein lsm6 [Cryptococcus neoformans
var. neoformans JEC21]
gi|134118926|ref|XP_771966.1| hypothetical protein CNBN1460 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818356|sp|P0CR25.1|LSM6_CRYNB RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|338818357|sp|P0CR24.1|LSM6_CRYNJ RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|50254570|gb|EAL17319.1| hypothetical protein CNBN1460 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57230795|gb|AAW47104.1| u6 snRNA-associated sm-like protein lsm6, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 88
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 52/69 (75%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
+P++FL++I G+ V V++ SGVDY G+L CLDGYMN+A+EQ EE+ YGD F+R
Sbjct: 16 SPSEFLRNIVGKRVKVRIGSGVDYTGLLTCLDGYMNVALEQAEEWAGEVKTAAYGDCFLR 75
Query: 74 GNNVLYIST 82
GNNVLYIS
Sbjct: 76 GNNVLYISA 84
>gi|451998409|gb|EMD90873.1| hypothetical protein COCHEDRAFT_1194612 [Cochliobolus
heterostrophus C5]
Length = 89
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 59/84 (70%), Gaps = 4/84 (4%)
Query: 1 MSTGGE----KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTE 56
MST GE + +A ++ P+ FL I G PV VKLNSG+ Y+G L +DGYMNIA+E+ +
Sbjct: 1 MSTNGESPAPEAAADSRDPSGFLSEIIGAPVTVKLNSGIIYKGDLQSVDGYMNIALERCK 60
Query: 57 EYVNGQLKNKYGDAFIRGNNVLYI 80
E +G++ +GDAF+RGNNV YI
Sbjct: 61 EVSDGKVTRNWGDAFVRGNNVTYI 84
>gi|399217445|emb|CCF74332.1| unnamed protein product [Babesia microti strain RI]
Length = 84
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 59/80 (73%), Gaps = 3/80 (3%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
+P+ F+ S+ PVVV+LN+G +++GILACLD MNI+ME T+EY+NG L +YGD+FIR
Sbjct: 5 SPSSFITSVTRNPVVVRLNNGSNFKGILACLDERMNISMENTKEYINGVLVKEYGDSFIR 64
Query: 74 GNN---VLYISTSKRTLADG 90
GNN ++Y+ RT DG
Sbjct: 65 GNNGKCLVYLVLYIRTDNDG 84
>gi|164422788|ref|XP_001727995.1| hypothetical protein NCU10352 [Neurospora crassa OR74A]
gi|157069821|gb|EDO64904.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 105
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 49/64 (76%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+TEE++NG + YGDAF+
Sbjct: 12 KDPSGFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEFINGVKRRSYGDAFV 71
Query: 73 RGNN 76
RGNN
Sbjct: 72 RGNN 75
>gi|440634891|gb|ELR04810.1| U6 snRNA-associated Sm-like protein LSm6 [Geomyces destructans
20631-21]
Length = 83
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 52/82 (63%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
M GG K P+ FL I V VKLNSGV Y+G L +DGYMNIA+E E+V+
Sbjct: 1 MENGGAPQQGEGKDPSGFLGEIINSAVTVKLNSGVVYKGSLQSVDGYMNIALENCTEHVD 60
Query: 61 GQLKNKYGDAFIRGNNVLYIST 82
G + YGDAFIRGNNV+YIS
Sbjct: 61 GARRRSYGDAFIRGNNVMYISA 82
>gi|451848599|gb|EMD61904.1| hypothetical protein COCSADRAFT_173298 [Cochliobolus sativus
ND90Pr]
Length = 89
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 58/84 (69%), Gaps = 4/84 (4%)
Query: 1 MSTGGE----KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTE 56
MST GE + + ++ P+ FL I G PV VKLNSG+ Y+G L +DGYMNIA+E+ +
Sbjct: 1 MSTNGESPAPEAAPDSRDPSGFLSEIIGAPVTVKLNSGIIYKGDLQSVDGYMNIALERCK 60
Query: 57 EYVNGQLKNKYGDAFIRGNNVLYI 80
E +G++ +GDAF+RGNNV YI
Sbjct: 61 EVSDGKVTRNWGDAFVRGNNVTYI 84
>gi|189028861|sp|A6S5C9.2|LSM6_BOTFB RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|347826617|emb|CCD42314.1| similar to U6 snRNA-associated Sm-like protein LSm6 [Botryotinia
fuckeliana]
Length = 85
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 54/72 (75%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P+ FL I G V+VKLN+ + ++G L +DGYMNIA+E+ EE+V+G+ K +GDAF+
Sbjct: 12 KDPSSFLSEIIGSKVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVHGDAFV 71
Query: 73 RGNNVLYISTSK 84
RGNNV+YIS +
Sbjct: 72 RGNNVMYISADE 83
>gi|403416789|emb|CCM03489.1| predicted protein [Fibroporia radiculosa]
Length = 91
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/60 (73%), Positives = 54/60 (90%)
Query: 17 DFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNN 76
DFLK + G+ VVV+L SGVDYRG+L+CLDGYMNIA+EQTEE+V+G + N+YGDAFIRGNN
Sbjct: 30 DFLKGVVGKRVVVRLTSGVDYRGVLSCLDGYMNIALEQTEEHVDGAVTNRYGDAFIRGNN 89
>gi|298713466|emb|CBJ27021.1| Sm-like protein LSm6 [Ectocarpus siliculosus]
Length = 125
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 49/61 (80%), Gaps = 5/61 (8%)
Query: 2 STGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNG 61
TGG K ++P+DFLK++ GRPVVVKLNSG+DYRG+L CLDGYMNIAMEQT Y++
Sbjct: 67 QTGGGK-----RSPSDFLKTVLGRPVVVKLNSGIDYRGVLVCLDGYMNIAMEQTVLYIST 121
Query: 62 Q 62
Q
Sbjct: 122 Q 122
>gi|145535682|ref|XP_001453574.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421296|emb|CAK86177.1| unnamed protein product [Paramecium tetraurelia]
Length = 87
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 51/73 (69%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S +T ADF K + GR V VKL++ +Y G+LA LDG MN+ +EQ EEY+ +L NKYG
Sbjct: 2 SHEKRTSADFFKQVFGRTVNVKLHNRTEYIGVLAALDGNMNLVLEQCEEYLEQKLINKYG 61
Query: 69 DAFIRGNNVLYIS 81
+RGNNVLYIS
Sbjct: 62 QILLRGNNVLYIS 74
>gi|145508998|ref|XP_001440443.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407660|emb|CAK73046.1| unnamed protein product [Paramecium tetraurelia]
Length = 87
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 51/73 (69%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S +T ADF K + GR V VKL++ +Y G+LA LDG MN+ +EQ EEY+ +L NKYG
Sbjct: 2 SHEKRTSADFFKQVFGRTVNVKLHNRTEYIGVLAALDGNMNLVLEQCEEYLEQKLINKYG 61
Query: 69 DAFIRGNNVLYIS 81
+RGNNVLYIS
Sbjct: 62 QILLRGNNVLYIS 74
>gi|189028853|sp|A7F5M4.2|LSM6_SCLS1 RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 85
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 53/70 (75%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P+ FL I G V+VKLN+ + ++G L +DGYMNIA+E+ EE+V+G+ K +GDAF+
Sbjct: 12 KDPSSFLSDIIGSRVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVHGDAFV 71
Query: 73 RGNNVLYIST 82
RGNNV+YIS
Sbjct: 72 RGNNVMYISA 81
>gi|340520476|gb|EGR50712.1| predicted protein [Trichoderma reesei QM6a]
Length = 83
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 49/67 (73%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
A K P+ FL I G VVVKLNSGV Y+G L +DGYMNIA+E+T EYVNG + +YGD
Sbjct: 9 AEGKDPSSFLSDIIGNSVVVKLNSGVVYKGELQSVDGYMNIALEKTAEYVNGVKRREYGD 68
Query: 70 AFIRGNN 76
F+RGNN
Sbjct: 69 TFVRGNN 75
>gi|169601996|ref|XP_001794420.1| hypothetical protein SNOG_03875 [Phaeosphaeria nodorum SN15]
gi|111067960|gb|EAT89080.1| hypothetical protein SNOG_03875 [Phaeosphaeria nodorum SN15]
Length = 84
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 58/84 (69%), Gaps = 4/84 (4%)
Query: 1 MSTGGE----KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTE 56
MST GE +G+ ++ P+ FL I G PV VKLNSG+ Y+G L +DGYMNIA+E+ +
Sbjct: 1 MSTNGESPAPEGAGDSRDPSGFLSEIIGAPVTVKLNSGIVYKGDLQSVDGYMNIALERCK 60
Query: 57 EYVNGQLKNKYGDAFIRGNNVLYI 80
E G++ +GDAF+RGNN L++
Sbjct: 61 EVAEGRVIRNWGDAFVRGNNGLFL 84
>gi|71033743|ref|XP_766513.1| U6 small nuclear ribonucleoprotein [Theileria parva strain
Muguga]
gi|68353470|gb|EAN34230.1| U6 small nuclear ribonucleoprotein, putative [Theileria parva]
Length = 77
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 53/72 (73%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
TP+ ++ SI +PV+VKLN+G D++G LA LD MN+AME T E+++G + YGDAFIR
Sbjct: 5 TPSAYITSITRKPVLVKLNNGSDFKGTLASLDERMNLAMENTCEFLDGVMVKSYGDAFIR 64
Query: 74 GNNVLYISTSKR 85
GNNV YIS +
Sbjct: 65 GNNVYYISHDPK 76
>gi|428673255|gb|EKX74168.1| small nuclear ribonucleoprotein f, putative [Babesia equi]
Length = 82
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 50/63 (79%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
+P+ ++ I +PV+VKLN+G D+RGILA LD MNIAME T+EY++G+L YGDAFIR
Sbjct: 5 SPSAYINGITRKPVIVKLNNGSDFRGILASLDERMNIAMENTKEYLDGELVKTYGDAFIR 64
Query: 74 GNN 76
GNN
Sbjct: 65 GNN 67
>gi|403221355|dbj|BAM39488.1| uncharacterized protein TOT_010000943 [Theileria orientalis
strain Shintoku]
Length = 79
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 53/72 (73%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
TP+ ++ SI + VVVKL +G DY+GILA LD MN+AME T EY++G+ YGDAFIR
Sbjct: 5 TPSQYISSILRKNVVVKLYNGCDYKGILAGLDERMNLAMEDTAEYLDGKHVKTYGDAFIR 64
Query: 74 GNNVLYISTSKR 85
GNNV YIS ++
Sbjct: 65 GNNVYYISHDRK 76
>gi|388581808|gb|EIM22115.1| U6 snRNA-associated Sm-like protein LSm6 [Wallemia sebi CBS
633.66]
Length = 87
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 54/79 (68%), Gaps = 3/79 (3%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEE---YVNGQLKN 65
S T +P+ FLK+I G+ VVVKLNSG+ Y GIL CLDGYMN+ + E + +
Sbjct: 7 SDTKGSPSAFLKAIVGKSVVVKLNSGLLYTGILQCLDGYMNLVITDVRESSGIAGSPITS 66
Query: 66 KYGDAFIRGNNVLYISTSK 84
YG+AFIRGNNVLYIS ++
Sbjct: 67 TYGEAFIRGNNVLYISAAE 85
>gi|452822853|gb|EME29869.1| small nuclear ribonucleoprotein F isoform 2 [Galdieria
sulphuraria]
gi|452822854|gb|EME29870.1| small nuclear ribonucleoprotein F isoform 1 [Galdieria
sulphuraria]
Length = 90
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 48/66 (72%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+P++VKL G++YRG+L LD YMN+ + QTEE++NG++ K GD IR
Sbjct: 13 PKPFLHDLVGKPLIVKLKWGLEYRGLLVSLDSYMNLQLTQTEEWINGKMAGKLGDVLIRC 72
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 73 NNVLYV 78
>gi|440468641|gb|ELQ37792.1| LSM domain-containing protein [Magnaporthe oryzae Y34]
gi|440478854|gb|ELQ59653.1| LSM domain-containing protein [Magnaporthe oryzae P131]
Length = 76
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 46/64 (71%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P FL I G V VKLNSGV Y+G L +DGYMNIA+E+ EE+V GQ K YGDAF+
Sbjct: 12 KDPTSFLGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKKRSYGDAFV 71
Query: 73 RGNN 76
RGNN
Sbjct: 72 RGNN 75
>gi|258568810|ref|XP_002585149.1| hypothetical protein UREG_05838 [Uncinocarpus reesii 1704]
gi|237906595|gb|EEP80996.1| hypothetical protein UREG_05838 [Uncinocarpus reesii 1704]
Length = 144
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 56/84 (66%), Gaps = 7/84 (8%)
Query: 6 EKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 65
EKG++ + P+ FL I G V VKLNSGV Y+ DGYMNIA+E+T+EY++G+L+N
Sbjct: 3 EKGTSEGQDPSAFLSGITGASVTVKLNSGVVYK------DGYMNIALEKTQEYIDGKLRN 56
Query: 66 KYGDAFIRGNNV-LYISTSKRTLA 88
YGD F+RGNN LY R A
Sbjct: 57 SYGDVFVRGNNATLYNDRGARYFA 80
>gi|300123335|emb|CBK24608.2| unnamed protein product [Blastocystis hominis]
Length = 79
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 55/78 (70%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
SA K ++F+ S+ G+PV++ L +GV Y+GIL LDG++N+ +EQ EEY +G+ ++
Sbjct: 2 SAEDKVNSEFIASVYGKPVIIGLFTGVIYKGILGSLDGFLNVVLEQAEEYNDGKFVARFN 61
Query: 69 DAFIRGNNVLYISTSKRT 86
D F+RGNN++YI+ +
Sbjct: 62 DCFLRGNNIMYIAPNDEI 79
>gi|156086636|ref|XP_001610727.1| small nuclear ribonucleoprotein F [Babesia bovis T2Bo]
gi|154797980|gb|EDO07159.1| small nuclear ribonucleoprotein F, putative [Babesia bovis]
Length = 83
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 50/65 (76%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
T TP+ ++ +I +PV+VKLN+G +RG+L+ LD MN+AME T+EY +G+L YGD+F
Sbjct: 3 THTPSSYIANITRKPVIVKLNNGTRFRGLLSSLDDRMNLAMENTKEYCDGELVKAYGDSF 62
Query: 72 IRGNN 76
IRGNN
Sbjct: 63 IRGNN 67
>gi|221486867|gb|EEE25113.1| snRNA-associated Sm-like protein, putative [Toxoplasma gondii
GT1]
Length = 84
Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 51/69 (73%)
Query: 8 GSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKY 67
++ K+P+DFL+ + G+ VVV+L++G DYRG+L CLD MNIAM++ EE+V+G Y
Sbjct: 2 ATSAKKSPSDFLQKVIGQRVVVRLSNGTDYRGVLTCLDDRMNIAMDKAEEFVDGNFVAAY 61
Query: 68 GDAFIRGNN 76
G + IRGNN
Sbjct: 62 GLSLIRGNN 70
>gi|396458410|ref|XP_003833818.1| hypothetical protein LEMA_P065790.1 [Leptosphaeria maculans JN3]
gi|312210366|emb|CBX90453.1| hypothetical protein LEMA_P065790.1 [Leptosphaeria maculans JN3]
Length = 106
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 59/101 (58%), Gaps = 21/101 (20%)
Query: 1 MSTGGE----KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILA-------CL----- 44
MST GE + + ++ P+ FL I G PV VKLNSG+ Y+G+LA CL
Sbjct: 1 MSTNGESPGAEAAGDSRDPSGFLSEIIGAPVTVKLNSGIIYKGVLARAQVTFSCLTSRIG 60
Query: 45 -----DGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 80
DGYMNIA+E+ E G++ +GDAF+RGNNV YI
Sbjct: 61 ELQSVDGYMNIALERCREVSEGRVTRNWGDAFVRGNNVTYI 101
>gi|189028856|sp|Q6BR90.2|LSM6_DEBHA RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 85
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 6 EKGSATTKT-PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLK 64
E S + T P+ FL I G V V+L++GV+Y G L +DGYMNI +++T+E+V G
Sbjct: 7 ESSSGSENTGPSVFLSEIIGSSVTVRLHNGVEYLGNLQSIDGYMNIVLDETKEFVGGDQA 66
Query: 65 NKYGDAFIRGNNVLYIS 81
YGD FIRGNNVLYIS
Sbjct: 67 RNYGDVFIRGNNVLYIS 83
>gi|406862548|gb|EKD15598.1| putative U6 snRNA-associated Sm-like protein LSm6 [Marssonina
brunnea f. sp. 'multigermtubi' MB_m1]
Length = 173
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 47/64 (73%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P+ FL I G V VKLNSGV Y+G L +DGYMN+A+E+ EE+V+G + YGDAF+
Sbjct: 11 KDPSGFLSEIIGSSVTVKLNSGVVYKGELQSIDGYMNLALEKCEEHVDGVKRRSYGDAFV 70
Query: 73 RGNN 76
RGNN
Sbjct: 71 RGNN 74
>gi|448508183|ref|XP_003865891.1| Lsm6 Lsm protein [Candida orthopsilosis Co 90-125]
gi|380350229|emb|CCG20449.1| Lsm6 Lsm protein [Candida orthopsilosis Co 90-125]
Length = 79
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 48/67 (71%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P+ FL + G PV VKL SGV+YRG L +DGYMN+ +E +E++NG + YGD F+RG
Sbjct: 11 PSKFLGDLIGSPVRVKLYSGVEYRGDLQTIDGYMNVVLENGKEFINGDVTRDYGDLFLRG 70
Query: 75 NNVLYIS 81
N VLYI+
Sbjct: 71 NTVLYIT 77
>gi|322708894|gb|EFZ00471.1| U6 snRNA-associated protein LSm6 [Metarhizium anisopliae ARSEF
23]
Length = 102
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 56/96 (58%), Gaps = 22/96 (22%)
Query: 3 TGGEKGSATT---KTPADFLKSIRGRPVVVKLNSGVDYRGI------------------- 40
+ E GS + K P+ FL I G PV+VKLNSGV Y+G
Sbjct: 2 SSAENGSISQGEGKDPSSFLSDIIGNPVIVKLNSGVVYKGEALPETLPQRPVHDAHERRE 61
Query: 41 LACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNN 76
L +DGYMNIA+E+TEEY+NG+ + YGDAF+RGNN
Sbjct: 62 LQSVDGYMNIALEKTEEYINGKKRRDYGDAFVRGNN 97
>gi|385303090|gb|EIF47187.1| u6 snrna-associated sm-like protein [Dekkera bruxellensis
AWRI1499]
Length = 81
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 52/76 (68%)
Query: 6 EKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 65
E+ TT + A++L I PV+VKLN+G +Y GIL+ +DG+MNI +E+ E V ++
Sbjct: 4 EEQKKTTNSVANYLSGITSSPVIVKLNNGFEYHGILSSIDGFMNIVLEKCSEQVGSKVVK 63
Query: 66 KYGDAFIRGNNVLYIS 81
Y + F+RGNNV+YIS
Sbjct: 64 NYNELFLRGNNVMYIS 79
>gi|241957822|ref|XP_002421630.1| U6 snRNA-associated Sm-like protein Lsm6, putative [Candida
dubliniensis CD36]
gi|223644975|emb|CAX39567.1| U6 snRNA-associated Sm-like protein Lsm6, putative [Candida
dubliniensis CD36]
Length = 80
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 51/69 (73%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P+ FL I G V VKL++GV+Y+G L +DG+MN+ +++ E VNG++ +YGD FIRG
Sbjct: 12 PSKFLSGIIGSSVSVKLHNGVEYKGNLQTIDGFMNVVLDEGIETVNGKVTKEYGDVFIRG 71
Query: 75 NNVLYISTS 83
NNVLYIS +
Sbjct: 72 NNVLYISEA 80
>gi|294876061|ref|XP_002767532.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239869192|gb|EER00250.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
Length = 100
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN----GQLK 64
+A +TP DFL+ +RG V V+LN G DY G L LDG+MN+AM+ E+ + G
Sbjct: 5 TANRRTPGDFLREVRGCGVRVRLNDGTDYTGQLLALDGFMNLAMDDAIEFPDGVNSGSEG 64
Query: 65 NKYGDAFIRGNNVLYISTSKR 85
+YG A IRGNNVLYIS +R
Sbjct: 65 RRYGQAVIRGNNVLYISMLER 85
>gi|344229144|gb|EGV61030.1| U6 snRNA-associated Sm-like protein LSm6 [Candida tenuis ATCC
10573]
gi|344229145|gb|EGV61031.1| hypothetical protein CANTEDRAFT_116192 [Candida tenuis ATCC
10573]
Length = 83
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLK-NKY 67
S+ P+ FL I G V VKLN+GV Y G L +DG+MNI M+ T E++ G KY
Sbjct: 8 SSIKTDPSTFLSGIIGSKVSVKLNNGVSYVGNLQSIDGFMNIVMDTTAEFIGGAASGTKY 67
Query: 68 GDAFIRGNNVLYIS 81
GD FIRGNNVLYIS
Sbjct: 68 GDVFIRGNNVLYIS 81
>gi|355564587|gb|EHH21087.1| Small nuclear ribonucleoprotein F, partial [Macaca mulatta]
Length = 86
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 49/76 (64%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 66
Query: 75 NNVLYISTSKRTLADG 90
NNVLYI ++ DG
Sbjct: 67 NNVLYIRGVEKEEEDG 82
>gi|297263296|ref|XP_002798787.1| PREDICTED: hypothetical protein LOC716917 [Macaca mulatta]
Length = 240
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 161 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 220
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 221 NNVLYI 226
>gi|154308522|ref|XP_001553597.1| hypothetical protein BC1G_08321 [Botryotinia fuckeliana B05.10]
Length = 80
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 48/64 (75%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P+ FL I G V+VKLN+ + ++G L +DGYMNIA+E+ EE+V+G+ K +GDAF+
Sbjct: 12 KDPSSFLSEIIGSKVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVHGDAFV 71
Query: 73 RGNN 76
RGNN
Sbjct: 72 RGNN 75
>gi|395538237|ref|XP_003771091.1| PREDICTED: uncharacterized protein LOC100930019 [Sarcophilus
harrisii]
Length = 397
Score = 77.8 bits (190), Expect = 8e-13, Method: Composition-based stats.
Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 5/84 (5%)
Query: 2 STGGEKGSATTKT-----PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTE 56
+ GG+ S+ T P FL + G+PV+VKL G++Y+G L +DGYMN+ + TE
Sbjct: 300 AAGGQWRSSVVTTSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTE 359
Query: 57 EYVNGQLKNKYGDAFIRGNNVLYI 80
EY++G L G+ IR NNVLYI
Sbjct: 360 EYIDGALSGHLGEVLIRCNNVLYI 383
>gi|344304341|gb|EGW34590.1| U6 snRNA-associated Sm-like protein LSm6 [Spathaspora
passalidarum NRRL Y-27907]
Length = 77
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 48/69 (69%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P+ FL I G V+VKL +G++Y G L +DGYMN+ ++ +E NG++ YGD FIRG
Sbjct: 9 PSKFLSDIIGSSVIVKLQNGINYTGNLQTIDGYMNVVLDNAKECSNGKVVRDYGDVFIRG 68
Query: 75 NNVLYISTS 83
NNVLYIS +
Sbjct: 69 NNVLYISEA 77
>gi|84998126|ref|XP_953784.1| U6 snRNA-associated Sm-lke protein [Theileria annulata]
gi|65304781|emb|CAI73106.1| U6 snRNA-associated Sm-lke protein, putative [Theileria annulata]
Length = 76
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 49/66 (74%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
+P+ ++ SI +PV+VKLN+G D+ G LA LD MN+AME T EY++G L YGDAFIR
Sbjct: 5 SPSAYISSITRKPVLVKLNNGSDFTGTLASLDERMNLAMENTCEYLDGVLVKSYGDAFIR 64
Query: 74 GNNVLY 79
GNN ++
Sbjct: 65 GNNGIF 70
>gi|189028855|sp|A5DRQ6.2|LSM6_LODEL RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 80
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 49/67 (73%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P+ FL I G V VKL++GV+Y+G L +DGYMN+A+E +E ++ ++ YGD F+RG
Sbjct: 12 PSKFLGGIIGSSVKVKLHNGVEYQGDLQTIDGYMNVALENGKEVIDNKVTKHYGDVFLRG 71
Query: 75 NNVLYIS 81
NNVLYIS
Sbjct: 72 NNVLYIS 78
>gi|397473639|ref|XP_003808313.1| PREDICTED: uncharacterized protein LOC100993647 [Pan paniscus]
Length = 207
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 128 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 187
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 188 NNVLYI 193
>gi|398395245|ref|XP_003851081.1| hypothetical protein MYCGRDRAFT_74163 [Zymoseptoria tritici
IPO323]
gi|339470960|gb|EGP86057.1| hypothetical protein MYCGRDRAFT_74163 [Zymoseptoria tritici
IPO323]
Length = 98
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYR-GILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
+ P+ FL I G PV VKLNSGV Y+ G L +DGYMNIA+E T+E V+G+ + YGDA
Sbjct: 15 ARDPSGFLSEIIGAPVTVKLNSGVVYKVGELQSVDGYMNIALEDTKEMVDGKQRRNYGDA 74
Query: 71 FIRGNN 76
F+RGNN
Sbjct: 75 FVRGNN 80
>gi|402887300|ref|XP_003907034.1| PREDICTED: uncharacterized protein LOC101012297 [Papio anubis]
Length = 254
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 175 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 234
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 235 NNVLYI 240
>gi|255717166|ref|XP_002554864.1| KLTH0F15620p [Lachancea thermotolerans]
gi|238936247|emb|CAR24427.1| KLTH0F15620p [Lachancea thermotolerans CBS 6340]
Length = 84
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 56/85 (65%), Gaps = 7/85 (8%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQ-TEEY- 58
MS+ GE +TT A FL +I G+ VVVKL++G+ Y+G+L +DG+MNIA+ Q TE Y
Sbjct: 1 MSSSGE---STTTASAQFLSNIIGQSVVVKLHNGMLYQGVLESIDGFMNIALNQATEHYE 57
Query: 59 --VNGQLKNKYGDAFIRGNNVLYIS 81
NG L GD F+RG VLYIS
Sbjct: 58 TASNGLLHRYDGDVFVRGTQVLYIS 82
>gi|410342317|gb|JAA40105.1| small nuclear ribonucleoprotein polypeptide F [Pan troglodytes]
Length = 123
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 44 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 103
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 104 NNVLYI 109
>gi|296212622|ref|XP_002752905.1| PREDICTED: small nuclear ribonucleoprotein F [Callithrix jacchus]
Length = 131
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 52 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 111
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 112 NNVLYI 117
>gi|389585081|dbj|GAB67812.1| U6 snRNA-associated Sm-like protein LSm6 [Plasmodium cynomolgi
strain B]
Length = 77
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 56/70 (80%)
Query: 11 TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
++ +P DF++S++GR V+V+LN+G D++GILACLD MN+A+EQTEE+ G+ Y DA
Sbjct: 2 SSNSPKDFVESLKGRVVIVRLNNGSDFKGILACLDERMNVALEQTEEFFEGEFIESYYDA 61
Query: 71 FIRGNNVLYI 80
FIRGNNV YI
Sbjct: 62 FIRGNNVFYI 71
>gi|156036426|ref|XP_001586324.1| hypothetical protein SS1G_12902 [Sclerotinia sclerotiorum 1980]
gi|154698307|gb|EDN98045.1| hypothetical protein SS1G_12902 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 95
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 48/64 (75%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P+ FL I G V+VKLN+ + ++G L +DGYMNIA+E+ EE+V+G+ K +GDAF+
Sbjct: 12 KDPSSFLSDIIGSRVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVHGDAFV 71
Query: 73 RGNN 76
RGNN
Sbjct: 72 RGNN 75
>gi|440903909|gb|ELR54499.1| Small nuclear ribonucleoprotein F, partial [Bos grunniens mutus]
Length = 113
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 34 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 93
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 94 NNVLYI 99
>gi|431905318|gb|ELK10363.1| Small nuclear ribonucleoprotein F [Pteropus alecto]
Length = 182
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 103 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 162
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 163 NNVLYI 168
>gi|403276113|ref|XP_003929758.1| PREDICTED: uncharacterized protein LOC101045055 [Saimiri
boliviensis boliviensis]
Length = 209
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 130 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 189
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 190 NNVLYI 195
>gi|355721060|gb|AES07139.1| small nuclear ribonucleoprotein polypeptide F [Mustela putorius
furo]
Length = 95
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 30 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 89
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 90 NNVLYI 95
>gi|48145619|emb|CAG33032.1| SNRPF [Homo sapiens]
Length = 86
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 48/76 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 66
Query: 75 NNVLYISTSKRTLADG 90
NNVLYI + DG
Sbjct: 67 NNVLYIRGVEEEEEDG 82
>gi|334348082|ref|XP_001371072.2| PREDICTED: hypothetical protein LOC100017542 [Monodelphis
domestica]
Length = 328
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 249 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 308
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 309 NNVLYI 314
>gi|41946811|gb|AAH66015.1| Snrpf protein, partial [Mus musculus]
Length = 112
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 33 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 92
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 93 NNVLYI 98
>gi|74353864|gb|AAI02193.1| SNRPF protein [Bos taurus]
Length = 119
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 40 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 99
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 100 NNVLYI 105
>gi|443704311|gb|ELU01412.1| hypothetical protein CAPTEDRAFT_159680 [Capitella teleta]
Length = 86
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 47/71 (66%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
A P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEE+++G L G+
Sbjct: 2 AMPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNLQLANTEEFIDGTLSGNLGE 61
Query: 70 AFIRGNNVLYI 80
FIR NNVLY+
Sbjct: 62 VFIRCNNVLYV 72
>gi|395744685|ref|XP_002823653.2| PREDICTED: uncharacterized protein LOC100451758 [Pongo abelii]
Length = 293
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 214 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 273
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 274 NNVLYI 279
>gi|354478551|ref|XP_003501478.1| PREDICTED: small nuclear ribonucleoprotein F-like [Cricetulus
griseus]
Length = 169
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 90 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 149
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 150 NNVLYI 155
>gi|410965324|ref|XP_003989200.1| PREDICTED: uncharacterized protein LOC101091795 [Felis catus]
Length = 317
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 238 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 297
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 298 NNVLYI 303
>gi|354544771|emb|CCE41496.1| hypothetical protein CPAR2_800480 [Candida parapsilosis]
Length = 79
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 46/67 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P+ FL + G PV VKL SGV+YRG L +DGYMN+ +E +E++ + YGD F+RG
Sbjct: 11 PSKFLGDLIGSPVKVKLYSGVEYRGDLQTIDGYMNVVLENGKEFIKDTMTRDYGDLFLRG 70
Query: 75 NNVLYIS 81
N VLYI+
Sbjct: 71 NTVLYIT 77
>gi|380815854|gb|AFE79801.1| small nuclear ribonucleoprotein F [Macaca mulatta]
Length = 86
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 46/71 (64%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
+ P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+
Sbjct: 2 SLPHNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61
Query: 70 AFIRGNNVLYI 80
IR NNVLYI
Sbjct: 62 VLIRCNNVLYI 72
>gi|156392353|ref|XP_001636013.1| predicted protein [Nematostella vectensis]
gi|156223112|gb|EDO43950.1| predicted protein [Nematostella vectensis]
Length = 88
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 46/66 (69%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL S+ G+PV++KL G++Y+G L +DGYMN+ + TEE+++G L G+ IR
Sbjct: 9 PKPFLNSLTGKPVIIKLKWGMEYKGYLVSVDGYMNLQLANTEEFIDGALTGNLGEVLIRC 68
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 69 NNVLYV 74
>gi|51468014|ref|NP_001003881.1| small nuclear ribonucleoprotein polypeptide F-like [Danio rerio]
gi|318104944|ref|NP_001188176.1| small nuclear ribonucleoprotein f [Ictalurus punctatus]
gi|348521200|ref|XP_003448114.1| PREDICTED: small nuclear ribonucleoprotein F-like [Oreochromis
niloticus]
gi|49619143|gb|AAT68156.1| small nuclear ribonucleoprotein F [Danio rerio]
gi|190336933|gb|AAI62363.1| Small nuclear ribonucleoprotein polypeptide F-like [Danio rerio]
gi|190339458|gb|AAI62369.1| Small nuclear ribonucleoprotein polypeptide F-like [Danio rerio]
gi|308321377|gb|ADO27840.1| small nuclear ribonucleoprotein f [Ictalurus furcatus]
gi|308323773|gb|ADO29022.1| small nuclear ribonucleoprotein f [Ictalurus punctatus]
Length = 86
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEYV+G L G+ IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYVDGALAGHLGEVLIRC 66
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 67 NNVLYI 72
>gi|260800049|ref|XP_002594949.1| hypothetical protein BRAFLDRAFT_271061 [Branchiostoma floridae]
gi|229280187|gb|EEN50960.1| hypothetical protein BRAFLDRAFT_271061 [Branchiostoma floridae]
Length = 87
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G
Sbjct: 2 STLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIDGALAGNLG 61
Query: 69 DAFIRGNNVLYI 80
+ IR NNVLYI
Sbjct: 62 EVLIRCNNVLYI 73
>gi|291389755|ref|XP_002711328.1| PREDICTED: SNRPF protein-like [Oryctolagus cuniculus]
Length = 102
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 23 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 82
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 83 NNVLYI 88
>gi|74189295|dbj|BAE22683.1| unnamed protein product [Mus musculus]
Length = 86
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 66
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 67 NNVLYI 72
>gi|242007618|ref|XP_002424631.1| membrane-associated protein, putative [Pediculus humanus
corporis]
gi|212508097|gb|EEB11893.1| membrane-associated protein, putative [Pediculus humanus
corporis]
Length = 87
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL S+ G+PV+VKL G +Y+G L +DGYMN+ + TEEY++GQ G+ +R
Sbjct: 8 PKPFLNSLTGKPVMVKLKWGQEYKGYLVSVDGYMNLQLANTEEYISGQPTGSLGEVLVRC 67
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 68 NNVLYI 73
>gi|4507131|ref|NP_003086.1| small nuclear ribonucleoprotein F [Homo sapiens]
gi|52346080|ref|NP_001005083.1| small nuclear ribonucleoprotein polypeptide F [Xenopus (Silurana)
tropicalis]
gi|147903163|ref|NP_001080901.1| small nuclear ribonucleoprotein F [Xenopus laevis]
gi|186910249|ref|NP_001119563.1| small nuclear ribonucleoprotein F [Rattus norvegicus]
gi|254028189|ref|NP_081522.1| small nuclear ribonucleoprotein F [Mus musculus]
gi|298160925|ref|NP_001177142.1| small nuclear ribonucleoprotein polypeptide F [Sus scrofa]
gi|303324598|ref|NP_001181956.1| small nuclear ribonucleoprotein F [Bos taurus]
gi|118082523|ref|XP_416157.2| PREDICTED: small nuclear ribonucleoprotein F [Gallus gallus]
gi|301767736|ref|XP_002919282.1| PREDICTED: small nuclear ribonucleoprotein F-like [Ailuropoda
melanoleuca]
gi|338721167|ref|XP_003364320.1| PREDICTED: small nuclear ribonucleoprotein F-like [Equus
caballus]
gi|344266498|ref|XP_003405317.1| PREDICTED: small nuclear ribonucleoprotein F-like [Loxodonta
africana]
gi|348581020|ref|XP_003476276.1| PREDICTED: small nuclear ribonucleoprotein F-like [Cavia
porcellus]
gi|395820047|ref|XP_003783389.1| PREDICTED: small nuclear ribonucleoprotein F [Otolemur garnettii]
gi|410047113|ref|XP_003313967.2| PREDICTED: small nuclear ribonucleoprotein F [Pan troglodytes]
gi|426225041|ref|XP_004006676.1| PREDICTED: small nuclear ribonucleoprotein F [Ovis aries]
gi|426373754|ref|XP_004053753.1| PREDICTED: small nuclear ribonucleoprotein F [Gorilla gorilla
gorilla]
gi|441626858|ref|XP_003259549.2| PREDICTED: small nuclear ribonucleoprotein F [Nomascus
leucogenys]
gi|54039569|sp|P62321.1|RUXF_XENLA RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F;
AltName: Full=Sm protein F; Short=Sm-F; Short=SmF
gi|61237391|sp|P62306.1|RUXF_HUMAN RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F;
AltName: Full=Sm protein F; Short=Sm-F; Short=SmF
gi|61237394|sp|P62307.1|RUXF_MOUSE RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F;
AltName: Full=Sm protein F; Short=Sm-F; Short=SmF
gi|166233535|sp|Q3T0Z8.2|RUXF_BOVIN RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F;
AltName: Full=Sm protein F; Short=Sm-F; Short=SmF
gi|225734044|pdb|3CW1|F Chain F, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734053|pdb|3CW1|Z Chain Z, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734062|pdb|3CW1|1 Chain 1, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734071|pdb|3CW1|2 Chain 2, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|315583604|pdb|3PGW|F Chain F, Crystal Structure Of Human U1 Snrnp
gi|315583613|pdb|3PGW|I Chain I, Crystal Structure Of Human U1 Snrnp
gi|332639438|pdb|2Y9A|F Chain F, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639445|pdb|2Y9A|M Chain M, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639452|pdb|2Y9A|T Chain T, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639462|pdb|2Y9B|F Chain F, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639469|pdb|2Y9B|M Chain M, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639476|pdb|2Y9B|T Chain T, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639486|pdb|2Y9C|F Chain F, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639493|pdb|2Y9C|M Chain M, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639500|pdb|2Y9C|T Chain T, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639510|pdb|2Y9D|F Chain F, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639517|pdb|2Y9D|M Chain M, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639524|pdb|2Y9D|T Chain T, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|343781213|pdb|3S6N|F Chain F, Crystal Structure Of The Gemin2-Binding Domain Of Smn,
Gemin2 In Complex With Smd1D2FEG FROM HUMAN
gi|444302202|pdb|4F7U|F Chain F, Macromolecular Machine 6
gi|444302203|pdb|4F7U|I Chain I, Macromolecular Machine 6
gi|453055425|pdb|1VU2|D Chain D, The 8s Snrnp Assembly Intermediate
gi|453055433|pdb|1VU2|L Chain L, The 8s Snrnp Assembly Intermediate
gi|453055441|pdb|1VU2|T Chain T, The 8s Snrnp Assembly Intermediate
gi|453055449|pdb|1VU2|BB Chain b, The 8s Snrnp Assembly Intermediate
gi|453055457|pdb|1VU2|JJ Chain j, The 8s Snrnp Assembly Intermediate
gi|453055465|pdb|1VU2|RR Chain r, The 8s Snrnp Assembly Intermediate
gi|453055477|pdb|1VU2|ZZ Chain z, The 8s Snrnp Assembly Intermediate
gi|453055481|pdb|1VU3|D Chain D, The 8s Snrnp Assembly Intermediate
gi|453055489|pdb|1VU3|L Chain L, The 8s Snrnp Assembly Intermediate
gi|453055497|pdb|1VU3|T Chain T, The 8s Snrnp Assembly Intermediate
gi|453055505|pdb|1VU3|BB Chain b, The 8s Snrnp Assembly Intermediate
gi|453055513|pdb|1VU3|JJ Chain j, The 8s Snrnp Assembly Intermediate
gi|453055521|pdb|1VU3|RR Chain r, The 8s Snrnp Assembly Intermediate
gi|453056013|pdb|4F77|L Chain L, The 8s Snrnp Assembly Intermediate
gi|453056021|pdb|4F77|D Chain D, The 8s Snrnp Assembly Intermediate
gi|453056029|pdb|4F77|T Chain T, The 8s Snrnp Assembly Intermediate
gi|453056037|pdb|4F77|BB Chain b, The 8s Snrnp Assembly Intermediate
gi|453056045|pdb|4F77|JJ Chain j, The 8s Snrnp Assembly Intermediate
gi|453056053|pdb|4F77|RR Chain r, The 8s Snrnp Assembly Intermediate
gi|453056065|pdb|4F77|ZZ Chain z, The 8s Snrnp Assembly Intermediate
gi|806564|emb|CAA59688.1| Sm protein F [Homo sapiens]
gi|12842305|dbj|BAB25551.1| unnamed protein product [Mus musculus]
gi|33417283|gb|AAH56127.1| Snrpf-prov protein [Xenopus laevis]
gi|49900002|gb|AAH77006.1| small nuclear ribonucleoprotein polypeptide F [Xenopus (Silurana)
tropicalis]
gi|71682561|gb|AAI00500.1| Snrpf protein [Mus musculus]
gi|89273434|emb|CAJ82339.1| small nuclear ribonucleoprotein polypeptide F [Xenopus (Silurana)
tropicalis]
gi|119617954|gb|EAW97548.1| small nuclear ribonucleoprotein polypeptide F, isoform CRA_a
[Homo sapiens]
gi|124504507|gb|AAI28454.1| Small nuclear ribonucleoprotein polypeptide F [Homo sapiens]
gi|124504583|gb|AAI28453.1| Small nuclear ribonucleoprotein polypeptide F [Homo sapiens]
gi|127796370|gb|AAH02505.3| Small nuclear ribonucleoprotein polypeptide F [Homo sapiens]
gi|127799057|gb|AAH63397.2| SNRPF protein [Homo sapiens]
gi|148689615|gb|EDL21562.1| mCG4969 [Mus musculus]
gi|149067174|gb|EDM16907.1| rCG48672 [Rattus norvegicus]
gi|189053073|dbj|BAG34695.1| unnamed protein product [Homo sapiens]
gi|296487589|tpg|DAA29702.1| TPA: small nuclear ribonucleoprotein polypeptide F [Bos taurus]
gi|383412003|gb|AFH29215.1| small nuclear ribonucleoprotein F [Macaca mulatta]
gi|384942318|gb|AFI34764.1| small nuclear ribonucleoprotein F [Macaca mulatta]
gi|410214144|gb|JAA04291.1| small nuclear ribonucleoprotein polypeptide F [Pan troglodytes]
gi|410287118|gb|JAA22159.1| small nuclear ribonucleoprotein polypeptide F [Pan troglodytes]
Length = 86
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 66
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 67 NNVLYI 72
>gi|403269393|ref|XP_003926727.1| PREDICTED: small nuclear ribonucleoprotein F-like [Saimiri
boliviensis boliviensis]
Length = 86
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 66
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 67 NNVLYI 72
>gi|170088114|ref|XP_001875280.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650480|gb|EDR14721.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 82
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 44/66 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL+ + G+PV V+L G++Y+G L DGYMN+ + TEEY +GQ G+ FIR
Sbjct: 9 PKPFLQELTGKPVFVRLKWGLEYKGFLVSTDGYMNLQLANTEEYQDGQSNGALGEVFIRC 68
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 69 NNVLYI 74
>gi|241610412|ref|XP_002406902.1| membrane-associated protein, putative [Ixodes scapularis]
gi|215502736|gb|EEC12230.1| membrane-associated protein, putative [Ixodes scapularis]
Length = 84
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL S+ G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G G+ +R
Sbjct: 8 PKPFLNSLTGKPVMVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIDGNCTGNLGEVLVRC 67
Query: 75 NNVLYISTSKRTLADG 90
NNVLY+ + DG
Sbjct: 68 NNVLYVRGVEEEEEDG 83
>gi|355786423|gb|EHH66606.1| Small nuclear ribonucleoprotein F, partial [Macaca fascicularis]
Length = 86
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 66
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 67 NNVLYI 72
>gi|301090416|ref|XP_002895423.1| small nuclear ribonucleoprotein F, putative [Phytophthora
infestans T30-4]
gi|262098675|gb|EEY56727.1| small nuclear ribonucleoprotein F, putative [Phytophthora
infestans T30-4]
Length = 98
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 46/66 (69%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL ++ G+PVV +L G++Y+G+L +D YMN+ + TEEY+NG+L G+ +R
Sbjct: 8 PKPFLTNLTGKPVVARLKWGMEYKGVLLSVDSYMNLQLANTEEYINGELTGNLGETLVRC 67
Query: 75 NNVLYI 80
NNVL+I
Sbjct: 68 NNVLFI 73
>gi|237843565|ref|XP_002371080.1| small nuclear ribonucleoprotein F, putative [Toxoplasma gondii
ME49]
gi|211968744|gb|EEB03940.1| small nuclear ribonucleoprotein F, putative [Toxoplasma gondii
ME49]
gi|221504941|gb|EEE30606.1| small nuclear ribonucleoprotein F, putative [Toxoplasma gondii
VEG]
Length = 87
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 47/77 (61%)
Query: 8 GSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKY 67
+ T P FL S+ GR V+VKL G++Y+G L D YMN+ ++ TEE+V+G K
Sbjct: 2 ATVTPVNPKPFLTSLTGRQVMVKLKWGIEYKGYLKSFDEYMNLQLQNTEEWVDGSFKGHL 61
Query: 68 GDAFIRGNNVLYISTSK 84
G+ +R NNVLY+ K
Sbjct: 62 GEVLLRCNNVLYLRQVK 78
>gi|198432767|ref|XP_002124025.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide
F [Ciona intestinalis]
Length = 87
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 45/72 (62%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEE+V G L G
Sbjct: 2 STLPMNPKPFLNGLTGKPVLVKLKWGMEYKGYLVSVDGYMNMQLANTEEFVEGALSGHLG 61
Query: 69 DAFIRGNNVLYI 80
+ IR NNVLYI
Sbjct: 62 EILIRCNNVLYI 73
>gi|326911717|ref|XP_003202202.1| PREDICTED: small nuclear ribonucleoprotein F-like, partial
[Meleagris gallopavo]
Length = 82
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 3 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 62
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 63 NNVLYI 68
>gi|241735825|ref|XP_002413964.1| membrane-associated protein, putative [Ixodes scapularis]
gi|215507818|gb|EEC17272.1| membrane-associated protein, putative [Ixodes scapularis]
gi|346470799|gb|AEO35244.1| hypothetical protein [Amblyomma maculatum]
gi|346470801|gb|AEO35245.1| hypothetical protein [Amblyomma maculatum]
gi|442748773|gb|JAA66546.1| Putative small nuclear ribonucleoprotein polypeptide f [Ixodes
ricinus]
Length = 87
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL S+ G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G G+ +R
Sbjct: 8 PKPFLNSLTGKPVMVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIDGNCTGNLGEVLVRC 67
Query: 75 NNVLYISTSKRTLADG 90
NNVLY+ + DG
Sbjct: 68 NNVLYVRGVEEEEEDG 83
>gi|226531954|ref|NP_001151866.1| small nuclear ribonucleoprotein F [Zea mays]
gi|195650409|gb|ACG44672.1| small nuclear ribonucleoprotein F [Zea mays]
gi|413935831|gb|AFW70382.1| small nuclear ribonucleoprotein F [Zea mays]
Length = 107
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 46/66 (69%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL ++ G+PV+VKL G++Y+G LA +D YMN+ + TEEY++GQ G+ IR
Sbjct: 29 PKPFLNNLTGKPVIVKLKWGMEYKGYLASVDSYMNLQLANTEEYIDGQFSGNLGEILIRC 88
Query: 75 NNVLYI 80
NNV+Y+
Sbjct: 89 NNVMYL 94
>gi|432943738|ref|XP_004083261.1| PREDICTED: small nuclear ribonucleoprotein F-like [Oryzias
latipes]
Length = 86
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEYV+G L G+ +R
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYVDGALAGHLGEVLVRC 66
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 67 NNVLYI 72
>gi|401403798|ref|XP_003881578.1| hypothetical protein NCLIV_013380 [Neospora caninum Liverpool]
gi|325115991|emb|CBZ51545.1| hypothetical protein NCLIV_013380 [Neospora caninum Liverpool]
Length = 87
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 47/77 (61%)
Query: 8 GSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKY 67
+ T P FL S+ GR V+VKL G++Y+G L D YMN+ ++ TEE+V+G K
Sbjct: 2 ATVTPVNPKPFLTSLTGRQVMVKLKWGIEYKGYLKSFDEYMNLQLQNTEEWVDGNFKGHL 61
Query: 68 GDAFIRGNNVLYISTSK 84
G+ +R NNVLY+ K
Sbjct: 62 GEVLLRCNNVLYLRQVK 78
>gi|226531376|ref|NP_001150516.1| small nuclear ribonucleoprotein F [Zea mays]
gi|194696080|gb|ACF82124.1| unknown [Zea mays]
gi|195609436|gb|ACG26548.1| small nuclear ribonucleoprotein F [Zea mays]
gi|195622854|gb|ACG33257.1| small nuclear ribonucleoprotein F [Zea mays]
gi|195639814|gb|ACG39375.1| small nuclear ribonucleoprotein F [Zea mays]
gi|413926377|gb|AFW66309.1| small nuclear ribonucleoprotein F [Zea mays]
gi|413935832|gb|AFW70383.1| small nuclear ribonucleoprotein F [Zea mays]
gi|413935833|gb|AFW70384.1| small nuclear ribonucleoprotein F [Zea mays]
Length = 86
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 46/66 (69%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL ++ G+PV+VKL G++Y+G LA +D YMN+ + TEEY++GQ G+ IR
Sbjct: 8 PKPFLNNLTGKPVIVKLKWGMEYKGYLASVDSYMNLQLANTEEYIDGQFSGNLGEILIRC 67
Query: 75 NNVLYI 80
NNV+Y+
Sbjct: 68 NNVMYL 73
>gi|348673489|gb|EGZ13308.1| hypothetical protein PHYSODRAFT_316641 [Phytophthora sojae]
Length = 98
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 46/66 (69%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL ++ G+PVV +L G++Y+G+L +D YMN+ + TEEY+NG+L G+ +R
Sbjct: 8 PKPFLTNLTGKPVVARLKWGMEYKGVLLSVDSYMNLQLANTEEYINGELTGNLGETLVRC 67
Query: 75 NNVLYI 80
NNVL+I
Sbjct: 68 NNVLFI 73
>gi|427786011|gb|JAA58457.1| Putative small nuclear ribonucleoprotein polypeptide f
[Rhipicephalus pulchellus]
Length = 87
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL S+ G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G G+ +R
Sbjct: 8 PKPFLNSLTGKPVMVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIDGNCTGNLGEVLLRC 67
Query: 75 NNVLYISTSKRTLADG 90
NNVLY+ + DG
Sbjct: 68 NNVLYVRGVEEEEEDG 83
>gi|389747075|gb|EIM88254.1| small nuclear ribonucleo protein SmF, partial [Stereum hirsutum
FP-91666 SS1]
Length = 84
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 47/73 (64%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P F++ + G+PV VKL G++Y+G L DGYMN+ + TEE+ NG+ G+ FIR
Sbjct: 6 PKPFMQELTGKPVFVKLKWGLEYKGFLVSTDGYMNLQLANTEEFQNGESTGTLGEVFIRC 65
Query: 75 NNVLYISTSKRTL 87
NNVLYI + T+
Sbjct: 66 NNVLYIISFLFTI 78
>gi|221484764|gb|EEE23058.1| hypothetical protein TGGT1_039230 [Toxoplasma gondii GT1]
Length = 117
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 46/75 (61%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
T P FL S+ GR V+VKL G++Y+G L D YMN+ ++ TEE+V+G K G+
Sbjct: 34 VTPVNPKPFLTSLTGRQVMVKLKWGIEYKGYLKSFDEYMNLQLQNTEEWVDGSFKGHLGE 93
Query: 70 AFIRGNNVLYISTSK 84
+R NNVLY+ K
Sbjct: 94 VLLRCNNVLYLRQVK 108
>gi|258597322|ref|XP_001347951.2| small nuclear ribonucleoprotein F, putative [Plasmodium
falciparum 3D7]
gi|254832663|gb|AAN35864.2| small nuclear ribonucleoprotein F, putative [Plasmodium
falciparum 3D7]
Length = 86
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL S+ G V++KL G++Y+GIL DGYMNI + EE+++G+ K G+ F+R
Sbjct: 10 PKPFLNSLAGNRVIIKLKWGMEYKGILKSFDGYMNIRLTNAEEWIHGEFKGTLGEIFLRC 69
Query: 75 NNVLYI 80
NN+LYI
Sbjct: 70 NNILYI 75
>gi|31212897|ref|XP_312266.1| AGAP002658-PA [Anopheles gambiae str. PEST]
gi|30177439|gb|EAA07677.2| AGAP002658-PA [Anopheles gambiae str. PEST]
Length = 88
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
+A P FL + G+PV++KL G +Y+G L +DGYMN+ + TEE+V+GQ G
Sbjct: 3 TAMPINPKPFLNGLTGKPVIIKLKWGHEYKGFLVSVDGYMNMQLANTEEFVDGQNTGHLG 62
Query: 69 DAFIRGNNVLYI 80
+ IR NNVLYI
Sbjct: 63 EVLIRCNNVLYI 74
>gi|195639214|gb|ACG39075.1| small nuclear ribonucleoprotein F [Zea mays]
Length = 86
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 46/66 (69%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL ++ G+P++VKL G++Y+G LA +D YMN+ + TEEY++GQ G+ IR
Sbjct: 8 PKPFLNNLTGKPIIVKLKWGMEYKGYLASVDSYMNLQLANTEEYIDGQFSGNLGEILIRC 67
Query: 75 NNVLYI 80
NNV+Y+
Sbjct: 68 NNVMYL 73
>gi|116782528|gb|ABK22541.1| unknown [Picea sitchensis]
Length = 84
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL ++ G+PV+VKL G++Y+G L +D YMN+ + TEEY++GQ G+ IR
Sbjct: 8 PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEYIDGQFTGNLGEVLIRC 67
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 68 NNVLYL 73
>gi|47218337|emb|CAG04169.1| unnamed protein product [Tetraodon nigroviridis]
Length = 87
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEE+V+G L G+ IR
Sbjct: 8 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEFVDGALAGHLGEVLIRC 67
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 68 NNVLYI 73
>gi|196008042|ref|XP_002113887.1| hypothetical protein TRIADDRAFT_26794 [Trichoplax adhaerens]
gi|190584291|gb|EDV24361.1| hypothetical protein TRIADDRAFT_26794, partial [Trichoplax
adhaerens]
Length = 81
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 43/66 (65%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G+DY+G L +D YMN+ + TEEYV G L G+ IR
Sbjct: 6 PKPFLNGLTGKPVLVKLKWGMDYKGFLVSVDNYMNLQLANTEEYVEGALTGNLGEVLIRC 65
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 66 NNVLYV 71
>gi|218190178|gb|EEC72605.1| hypothetical protein OsI_06076 [Oryza sativa Indica Group]
gi|222622299|gb|EEE56431.1| hypothetical protein OsJ_05599 [Oryza sativa Japonica Group]
Length = 146
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL ++ G+PV+VKL G++Y+G L +D YMN+ + TEEY++GQ G+ IR
Sbjct: 68 PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRC 127
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 128 NNVLYL 133
>gi|410918663|ref|XP_003972804.1| PREDICTED: small nuclear ribonucleoprotein F-like [Takifugu
rubripes]
Length = 88
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEE+V+G L G+ IR
Sbjct: 9 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEFVDGALAGHLGEVLIRC 68
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 69 NNVLYI 74
>gi|255722679|ref|XP_002546274.1| hypothetical protein CTRG_01056 [Candida tropicalis MYA-3404]
gi|240136763|gb|EER36316.1| hypothetical protein CTRG_01056 [Candida tropicalis MYA-3404]
Length = 102
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 46/65 (70%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P+ FL I G V VKL++GV+Y+G L +DG+MN+ +E +E VNG + +YGD FIRG
Sbjct: 12 PSKFLSDIIGSLVTVKLHNGVEYKGNLQTIDGFMNVVLEDGKESVNGSITKEYGDVFIRG 71
Query: 75 NNVLY 79
NN +Y
Sbjct: 72 NNGMY 76
>gi|115444577|ref|NP_001046068.1| Os02g0177500 [Oryza sativa Japonica Group]
gi|50252055|dbj|BAD27986.1| putative small nuclear ribonucleoprotein polypeptide F [Oryza
sativa Japonica Group]
gi|113535599|dbj|BAF07982.1| Os02g0177500 [Oryza sativa Japonica Group]
Length = 86
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL ++ G+PV+VKL G++Y+G L +D YMN+ + TEEY++GQ G+ IR
Sbjct: 8 PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRC 67
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 68 NNVLYL 73
>gi|115486505|ref|NP_001068396.1| Os11g0657300 [Oryza sativa Japonica Group]
gi|77552372|gb|ABA95169.1| small nuclear ribonucleoprotein F, putative, expressed [Oryza
sativa Japonica Group]
gi|113645618|dbj|BAF28759.1| Os11g0657300 [Oryza sativa Japonica Group]
gi|215693012|dbj|BAG88432.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218186140|gb|EEC68567.1| hypothetical protein OsI_36896 [Oryza sativa Indica Group]
gi|222616369|gb|EEE52501.1| hypothetical protein OsJ_34703 [Oryza sativa Japonica Group]
Length = 86
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL ++ G+PV+VKL G++Y+G L +D YMN+ + TEEY++GQ G+ IR
Sbjct: 8 PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRC 67
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 68 NNVLYL 73
>gi|345780722|ref|XP_539726.3| PREDICTED: uncharacterized protein LOC482609 [Canis lupus
familiaris]
Length = 316
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 237 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 296
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 297 NNVLYI 302
>gi|77552373|gb|ABA95170.1| small nuclear ribonucleoprotein F, putative, expressed [Oryza
sativa Japonica Group]
Length = 85
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL ++ G+PV+VKL G++Y+G L +D YMN+ + TEEY++GQ G+ IR
Sbjct: 7 PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRC 66
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 67 NNVLYL 72
>gi|448079823|ref|XP_004194473.1| Piso0_004969 [Millerozyma farinosa CBS 7064]
gi|359375895|emb|CCE86477.1| Piso0_004969 [Millerozyma farinosa CBS 7064]
Length = 89
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 50/78 (64%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK 66
K ++ P+ FL I G V VKL++GV+Y G L +DGYMNI +++T+E +NG +
Sbjct: 9 KKESSKLDPSKFLSEIIGNAVTVKLHNGVEYLGKLQSIDGYMNIVLDETKEVINGNIGRT 68
Query: 67 YGDAFIRGNNVLYISTSK 84
YGD F+RGNN Y+ K
Sbjct: 69 YGDVFLRGNNGKYLQYLK 86
>gi|229365806|gb|ACQ57883.1| Small nuclear ribonucleoprotein F [Anoplopoma fimbria]
Length = 86
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 44/66 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+ KL G++Y+G L +DGYMN+ + TEEYV+G L G+ IR
Sbjct: 7 PKPFLNGLTGKPVMAKLKWGMEYKGYLVSVDGYMNMQLANTEEYVDGALAGHLGEVLIRC 66
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 67 NNVLYI 72
>gi|170032813|ref|XP_001844274.1| small nuclear ribonucleoprotein F [Culex quinquefasciatus]
gi|167873231|gb|EDS36614.1| small nuclear ribonucleoprotein F [Culex quinquefasciatus]
Length = 88
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
+A P FL + G+PV++KL G +Y+G L +DGYMN+ + T+EYV+GQ G
Sbjct: 3 TAMPINPKPFLNGLTGKPVIIKLKWGHEYKGFLVSVDGYMNMQLANTDEYVDGQNTGHLG 62
Query: 69 DAFIRGNNVLYI 80
+ IR NNVLYI
Sbjct: 63 EVLIRCNNVLYI 74
>gi|327272686|ref|XP_003221115.1| PREDICTED: small nuclear ribonucleoprotein F-like [Anolis
carolinensis]
Length = 140
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G + G+ IR
Sbjct: 61 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGAMSGHLGEVLIRC 120
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 121 NNVLYI 126
>gi|384248919|gb|EIE22402.1| small nuclear ribo protein F [Coccomyxa subellipsoidea C-169]
Length = 85
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV++KL G++Y+G L +D YMN+ + TEEY++GQ G+ IR
Sbjct: 9 PKPFLNGLTGKPVIIKLKWGMEYKGYLVSVDSYMNLQLASTEEYIDGQFTGNLGEVLIRC 68
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 69 NNVLYM 74
>gi|312371148|gb|EFR19407.1| hypothetical protein AND_30966 [Anopheles darlingi]
Length = 88
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
+A P FL + G+PV++KL G +Y+G L +DGYMN+ + TEE+V+GQ G
Sbjct: 3 TAMPINPKPFLNGLTGKPVMIKLKWGHEYKGFLVSVDGYMNMQLANTEEFVDGQNTGHLG 62
Query: 69 DAFIRGNNVLYI 80
+ IR NNVLYI
Sbjct: 63 EVLIRCNNVLYI 74
>gi|432118939|gb|ELK38247.1| Small nuclear ribonucleoprotein F [Myotis davidii]
Length = 86
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 44/66 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ TEEY++G L G+ IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQPANTEEYIDGALSGHLGEVLIRC 66
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 67 NNVLYI 72
>gi|356562363|ref|XP_003549441.1| PREDICTED: probable small nuclear ribonucleoprotein F [Glycine
max]
Length = 88
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL ++ G+PV+VKL G++Y+G L +D YMN+ + TEEY+ GQ G+ IR
Sbjct: 8 PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGEILIRC 67
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 68 NNVLYL 73
>gi|255626597|gb|ACU13643.1| unknown [Glycine max]
Length = 88
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL ++ G+PV+VKL G++Y+G L +D YMN+ + TEEY+ GQ G+ IR
Sbjct: 8 PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGEILIRC 67
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 68 NNVLYL 73
>gi|302697029|ref|XP_003038193.1| hypothetical protein SCHCODRAFT_39758 [Schizophyllum commune
H4-8]
gi|300111890|gb|EFJ03291.1| hypothetical protein SCHCODRAFT_39758, partial [Schizophyllum
commune H4-8]
Length = 71
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 44/66 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL+ + G+PV V+L G++Y+G L DGYMN+ + TEE+ +GQ G+ FIR
Sbjct: 6 PKPFLQELTGKPVFVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGQSNGTLGEVFIRC 65
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 66 NNVLYI 71
>gi|291244974|ref|XP_002742366.1| PREDICTED: Snrpf protein-like [Saccoglossus kowalevskii]
Length = 88
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEE+++G L G+ IR
Sbjct: 9 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNLQLANTEEFIDGTLTGNLGEVLIRC 68
Query: 75 NNVLYI 80
NNV+YI
Sbjct: 69 NNVMYI 74
>gi|313235935|emb|CBY25078.1| unnamed protein product [Oikopleura dioica]
Length = 88
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL S+ G+PV VKL G++Y+G L +DGYMN+ + +EEY++G L G+ IR
Sbjct: 9 PKPFLNSLTGKPVQVKLKWGMEYKGYLMAVDGYMNLQLGNSEEYIDGALAGHLGEILIRC 68
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 69 NNVLYI 74
>gi|388514177|gb|AFK45150.1| unknown [Lotus japonicus]
Length = 88
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL ++ G+PV+VKL G++Y+G L +D YMN+ + TEEY+ GQ G+ IR
Sbjct: 8 PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGEILIRC 67
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 68 NNVLYL 73
>gi|356575227|ref|XP_003555743.1| PREDICTED: probable small nuclear ribonucleoprotein F [Glycine
max]
gi|255628071|gb|ACU14380.1| unknown [Glycine max]
Length = 88
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL ++ G+PV+VKL G++Y+G L +D YMN+ + TEEY+ GQ G+ IR
Sbjct: 8 PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGEILIRC 67
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 68 NNVLYL 73
>gi|334187031|ref|NP_001190872.1| small nuclear ribonucleoprotein F [Arabidopsis thaliana]
gi|332660340|gb|AEE85740.1| small nuclear ribonucleoprotein F [Arabidopsis thaliana]
Length = 96
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL ++ G+ V+VKL G++Y+G LA +D YMN+ + TEEY++GQL G+ IR
Sbjct: 16 PKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRC 75
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 76 NNVLYV 81
>gi|15234669|ref|NP_194751.1| small nuclear ribonucleoprotein F [Arabidopsis thaliana]
gi|297798954|ref|XP_002867361.1| hypothetical protein ARALYDRAFT_913456 [Arabidopsis lyrata subsp.
lyrata]
gi|297836060|ref|XP_002885912.1| hypothetical protein ARALYDRAFT_899645 [Arabidopsis lyrata subsp.
lyrata]
gi|10720264|sp|Q9SUM2.1|RUXF_ARATH RecName: Full=Probable small nuclear ribonucleoprotein F;
Short=snRNP-F; AltName: Full=Sm protein F; Short=Sm-F;
Short=SmF
gi|5730132|emb|CAB52466.1| snRNP Sm protein F-like [Arabidopsis thaliana]
gi|7269922|emb|CAB81015.1| snRNP Sm protein F-like [Arabidopsis thaliana]
gi|21593208|gb|AAM65157.1| snRNP Sm protein F-like [Arabidopsis thaliana]
gi|30102544|gb|AAP21190.1| At4g30220 [Arabidopsis thaliana]
gi|110743810|dbj|BAE99740.1| snRNP Sm protein F - like [Arabidopsis thaliana]
gi|297313197|gb|EFH43620.1| hypothetical protein ARALYDRAFT_913456 [Arabidopsis lyrata subsp.
lyrata]
gi|297331752|gb|EFH62171.1| hypothetical protein ARALYDRAFT_899645 [Arabidopsis lyrata subsp.
lyrata]
gi|332660339|gb|AEE85739.1| small nuclear ribonucleoprotein F [Arabidopsis thaliana]
Length = 88
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL ++ G+ V+VKL G++Y+G LA +D YMN+ + TEEY++GQL G+ IR
Sbjct: 8 PKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRC 67
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 68 NNVLYV 73
>gi|448084319|ref|XP_004195573.1| Piso0_004969 [Millerozyma farinosa CBS 7064]
gi|359376995|emb|CCE85378.1| Piso0_004969 [Millerozyma farinosa CBS 7064]
Length = 89
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK 66
K ++ P+ FL I G V VKL++GV+Y G L +DGYMNI +++T+E +NG +
Sbjct: 9 KKESSKLDPSKFLSEIIGNSVTVKLHNGVEYLGKLQSIDGYMNIVLDETKEVINGNIGRA 68
Query: 67 YGDAFIRGNN 76
YGD F+RGNN
Sbjct: 69 YGDVFLRGNN 78
>gi|357123340|ref|XP_003563369.1| PREDICTED: probable small nuclear ribonucleoprotein F-like
[Brachypodium distachyon]
Length = 86
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL ++ G+PV+VKL G++Y+G L +D YMN+ + TEEY++GQ G+ IR
Sbjct: 8 PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRC 67
Query: 75 NNVLYI 80
NNV+Y+
Sbjct: 68 NNVMYL 73
>gi|238879521|gb|EEQ43159.1| hypothetical protein CAWG_01385 [Candida albicans WO-1]
Length = 92
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 48/65 (73%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P+ FL I G V VKL++GV+Y+G L +DG+MN+ +++ +E VNG++ +YGD FIRG
Sbjct: 12 PSKFLSGIIGSSVSVKLHNGVEYKGNLQTIDGFMNVVLDEGKETVNGKVTKEYGDVFIRG 71
Query: 75 NNVLY 79
NN +Y
Sbjct: 72 NNGMY 76
>gi|357137844|ref|XP_003570509.1| PREDICTED: probable small nuclear ribonucleoprotein F-like
[Brachypodium distachyon]
Length = 86
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL ++ G+PV+VKL G++Y+G L +D YMN+ + TEEY++GQ G+ IR
Sbjct: 8 PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRC 67
Query: 75 NNVLYI 80
NNV+Y+
Sbjct: 68 NNVMYM 73
>gi|391341913|ref|XP_003745271.1| PREDICTED: small nuclear ribonucleoprotein F-like [Metaseiulus
occidentalis]
Length = 87
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL S G+PV+VKL G++Y+G L +DGYMN+ + TEE+++G G+ +R
Sbjct: 8 PKPFLNSFTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEFIDGSCTGNLGEVLVRC 67
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 68 NNVLYV 73
>gi|255088585|ref|XP_002506215.1| predicted protein [Micromonas sp. RCC299]
gi|226521486|gb|ACO67473.1| predicted protein [Micromonas sp. RCC299]
Length = 86
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 43/66 (65%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+P++VKL G++Y+G L D YMN+ + TEEYV+G+ G+ IR
Sbjct: 9 PKPFLNQLTGKPIIVKLKWGMEYKGFLVSTDAYMNLQLASTEEYVDGKFAGNLGEVLIRC 68
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 69 NNVLYL 74
>gi|221219120|gb|ACM08221.1| Small nuclear ribonucleoprotein F [Salmo salar]
gi|221219208|gb|ACM08265.1| Small nuclear ribonucleoprotein F [Salmo salar]
gi|225714736|gb|ACO13214.1| Small nuclear ribonucleoprotein F [Esox lucius]
Length = 87
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +D YMN+ + TEEYV+G L G+ +R
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDSYMNMQLANTEEYVDGALAGHLGEVLVRC 66
Query: 75 NNVLYISTSKRTLADG 90
NNVL+I + DG
Sbjct: 67 NNVLFIRGVEEEEEDG 82
>gi|221220004|gb|ACM08663.1| Small nuclear ribonucleoprotein F [Salmo salar]
Length = 90
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 44/66 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +D YMN+ + TEEYV+G L G+ +R
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDSYMNMQLANTEEYVDGALAGHLGEVLVRC 66
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 67 NNVLYI 72
>gi|209736898|gb|ACI69318.1| Small nuclear ribonucleoprotein F [Salmo salar]
Length = 87
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +D YMN+ + TEEYV+G L G+ +R
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDSYMNMQLANTEEYVDGALAGHLGEVLVRC 66
Query: 75 NNVLYISTSKRTLADG 90
NNVL+I + DG
Sbjct: 67 NNVLFIRGVEEEEEDG 82
>gi|225715690|gb|ACO13691.1| Small nuclear ribonucleoprotein F [Esox lucius]
Length = 86
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 44/66 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +D YMN+ + TEEYV+G L G+ +R
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDSYMNMQLANTEEYVDGALAGHLGEVLVRC 66
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 67 NNVLYI 72
>gi|221221134|gb|ACM09228.1| Small nuclear ribonucleoprotein F [Salmo salar]
Length = 86
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 44/66 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +D YMN+ + TEEYV+G L G+ +R
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDSYMNMQLANTEEYVDGALAGHLGEVLVRC 66
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 67 NNVLYI 72
>gi|320581302|gb|EFW95523.1| hypothetical protein HPODL_2857 [Ogataea parapolymorpha DL-1]
Length = 72
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
+ ++FL + PVVVKL G++Y G+LA +DGYMN+ ++ T E V Y + F+R
Sbjct: 3 STSNFLAEMTNSPVVVKLQHGLEYHGVLASIDGYMNVVLKDTVEMVENNKVRNYEEVFLR 62
Query: 74 GNNVLYIS 81
GNNVLYIS
Sbjct: 63 GNNVLYIS 70
>gi|167516518|ref|XP_001742600.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779224|gb|EDQ92838.1| predicted protein [Monosiga brevicollis MX1]
Length = 109
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+P++VKL G++Y+G+L D YMN+ + TEEYV+G + G+ IR
Sbjct: 35 PKPFLAGLTGKPILVKLKWGMEYKGVLKASDQYMNLQLLNTEEYVDGSMTGALGEVLIRC 94
Query: 75 NNVLYISTS 83
NNVLYI ++
Sbjct: 95 NNVLYIRSA 103
>gi|390336861|ref|XP_796806.3| PREDICTED: small nuclear ribonucleoprotein F-like
[Strongylocentrotus purpuratus]
Length = 88
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+V+L G++Y+G L +DGYMN+ + TEEY++G G+ IR
Sbjct: 9 PKPFLNGLTGKPVMVRLKWGMEYKGYLVSVDGYMNVQLASTEEYIDGTFTGNLGEVLIRC 68
Query: 75 NNVLYI 80
NNV+YI
Sbjct: 69 NNVMYI 74
>gi|395817616|ref|XP_003782261.1| PREDICTED: small nuclear ribonucleoprotein F-like [Otolemur
garnettii]
Length = 86
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 44/66 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+ L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKDYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 66
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 67 NNVLYI 72
>gi|225468340|ref|XP_002272246.1| PREDICTED: probable small nuclear ribonucleoprotein F [Vitis
vinifera]
gi|296083390|emb|CBI23345.3| unnamed protein product [Vitis vinifera]
Length = 88
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL ++ G+PV+VKL G++Y+G L +D YMN+ + +EEY++GQ G+ IR
Sbjct: 8 PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANSEEYIDGQFTGNLGEILIRC 67
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 68 NNVLYL 73
>gi|339233708|ref|XP_003381971.1| ribonucleo protein F [Trichinella spiralis]
gi|316979158|gb|EFV61986.1| ribonucleo protein F [Trichinella spiralis]
Length = 82
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 42/66 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL ++ G+PV+VKL G +Y+G L D YMN+ + TEEY NG L G+ IR
Sbjct: 4 PKPFLINLTGKPVIVKLKWGPEYKGYLISTDNYMNVQLAHTEEYTNGTLAGNLGEVLIRC 63
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 64 NNVLYI 69
>gi|298710621|emb|CBJ32049.1| Small nuclear ribonucleoprotein SmF [Ectocarpus siliculosus]
Length = 101
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRG-ILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
AT P FL + G+PV+VKL G++Y+G L +D YMN+ + TEEYV+G+ G
Sbjct: 2 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGGFLVSVDTYMNLLLTSTEEYVDGEFAGNLG 61
Query: 69 DAFIRGNNVLYI----STSKRTLADGA 91
D IR NNVLY+ ADGA
Sbjct: 62 DVLIRCNNVLYLRGVEEDEANAKADGA 88
>gi|299747331|ref|XP_001836960.2| small nuclear riboprotein F [Coprinopsis cinerea okayama7#130]
gi|298407471|gb|EAU84577.2| small nuclear riboprotein F [Coprinopsis cinerea okayama7#130]
Length = 81
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 45/72 (62%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S P FL+ + G+PV V+L G++Y+G L DGYMN+ + TEE+ +G+ G
Sbjct: 2 SVNPVNPKPFLQELTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGALG 61
Query: 69 DAFIRGNNVLYI 80
+ FIR NNVLYI
Sbjct: 62 EVFIRCNNVLYI 73
>gi|308481948|ref|XP_003103178.1| CRE-SNR-5 protein [Caenorhabditis remanei]
gi|308260283|gb|EFP04236.1| CRE-SNR-5 protein [Caenorhabditis remanei]
Length = 86
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 43/66 (65%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL S+ G+PVV KL G++Y+GIL +D YMN+ + EEY++G G+ IR
Sbjct: 9 PKPFLNSLTGKPVVCKLKWGMEYKGILVAVDSYMNLQLAHAEEYIDGNNTGNLGEILIRC 68
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 69 NNVLYV 74
>gi|405969415|gb|EKC34388.1| Small nuclear ribonucleoprotein F [Crassostrea gigas]
Length = 82
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 44/66 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G G+ IR
Sbjct: 3 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIDGAQTGNLGEVLIRC 62
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 63 NNVLYI 68
>gi|358057300|dbj|GAA96649.1| hypothetical protein E5Q_03320 [Mixia osmundae IAM 14324]
Length = 114
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 44/71 (61%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL+ G+PV V+L G++YRG L +D YMN+ + TEEY N Q G+ FIR
Sbjct: 8 PKPFLQDRVGKPVQVRLKWGMEYRGYLVSIDNYMNLQLANTEEYQNDQPAGSLGEVFIRC 67
Query: 75 NNVLYISTSKR 85
NNVLY+ + R
Sbjct: 68 NNVLYMYETPR 78
>gi|406605529|emb|CCH43042.1| hypothetical protein BN7_2589 [Wickerhamomyces ciferrii]
Length = 112
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 43/59 (72%)
Query: 18 FLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNN 76
F+ +I G V+VKL SG +Y G L +DGYMNI +E+T+E V+ ++ KYGD FIRGNN
Sbjct: 17 FISNISGAKVIVKLYSGEEYHGTLDSIDGYMNITLEETQEVVSDKVTRKYGDVFIRGNN 75
>gi|84999278|ref|XP_954360.1| small nuclear ribonucleoprotein f [Theileria annulata]
gi|65305358|emb|CAI73683.1| small nuclear ribonucleoprotein f, putative [Theileria annulata]
Length = 91
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG-DAFIR 73
P FL S+ G+ VVVKL G++Y+G L D YMN+ + EE+ NG LK K G D IR
Sbjct: 16 PKPFLTSLAGKTVVVKLKWGMEYKGTLKSFDSYMNLQLSDPEEWENGVLKGKLGNDILIR 75
Query: 74 GNNVLYISTSKRT 86
NN+LY+ S T
Sbjct: 76 CNNMLYVRESSET 88
>gi|221056272|ref|XP_002259274.1| small nuclear ribonucleoprotein f [Plasmodium knowlesi strain H]
gi|193809345|emb|CAQ40047.1| small nuclear ribonucleoprotein f, putative [Plasmodium knowlesi
strain H]
Length = 86
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL S+ G V++KL G++Y+G L D YMNI + EE+++G+ K G+ F+R
Sbjct: 9 NPKPFLNSLAGNRVIIKLKWGMEYKGNLKSFDAYMNIRLANAEEWIHGEYKGTLGEIFLR 68
Query: 74 GNNVLYISTSKRT 86
NN+LYI K T
Sbjct: 69 CNNILYIREDKET 81
>gi|395330543|gb|EJF62926.1| small nuclear ribonucleo protein SmF [Dichomitus squalens
LYAD-421 SS1]
Length = 87
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P F++ + G+PV V+L G++Y+G L DGYMN+ + TEE+ +G+ G+ FIR
Sbjct: 9 PKPFMQELTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGALGEVFIRC 68
Query: 75 NNVLYISTS 83
NNVLYI ++
Sbjct: 69 NNVLYIMST 77
>gi|145350487|ref|XP_001419636.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579868|gb|ABO97929.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 79
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 44/69 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL S+ G+ V VKL G++YRG L D YMN+ + TEEYV+G+ + G+ IR
Sbjct: 7 PKPFLASLTGKKVAVKLKWGMEYRGFLVSTDAYMNLQLASTEEYVDGERQGALGEVLIRC 66
Query: 75 NNVLYISTS 83
NNV+Y+ +
Sbjct: 67 NNVMYLKAA 75
>gi|321478414|gb|EFX89371.1| hypothetical protein DAPPUDRAFT_220519 [Daphnia pulex]
Length = 88
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL ++ G+P++VKL G +Y+G L +DGYMN+ + TEEY++G G+ +R
Sbjct: 9 PKPFLNALTGKPIMVKLKWGHEYKGYLVSVDGYMNLQLANTEEYIDGSCTGNLGEVLVRC 68
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 69 NNVLYI 74
>gi|224143719|ref|XP_002325051.1| predicted protein [Populus trichocarpa]
gi|222866485|gb|EEF03616.1| predicted protein [Populus trichocarpa]
Length = 88
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL ++ G+ V+VKL G++Y+G LA +D YMN+ + TEEY++GQ G+ IR
Sbjct: 8 PKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQFTGNLGEILIRC 67
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 68 NNVLYL 73
>gi|449456561|ref|XP_004146017.1| PREDICTED: LOW QUALITY PROTEIN: probable small nuclear
ribonucleoprotein F-like [Cucumis sativus]
gi|449503654|ref|XP_004162110.1| PREDICTED: LOW QUALITY PROTEIN: probable small nuclear
ribonucleoprotein F-like [Cucumis sativus]
Length = 88
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL ++ G+ VVVKL G++Y+G L +D YMN+ + TEEY++GQ G+ IR
Sbjct: 8 PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRC 67
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 68 NNVLYL 73
>gi|50421459|ref|XP_459280.1| DEHA2D18282p [Debaryomyces hansenii CBS767]
gi|49654947|emb|CAG87454.1| DEHA2D18282p [Debaryomyces hansenii CBS767]
Length = 84
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 6 EKGSATTKT-PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLK 64
E S + T P+ FL I G V V+L++GV+Y G L +DGYMNI +++T+E+V G
Sbjct: 7 ESSSGSENTGPSVFLSEIIGSSVTVRLHNGVEYLGNLQSIDGYMNIVLDETKEFVGGDQA 66
Query: 65 NKYGDAFIRGNN 76
YGD FIRGNN
Sbjct: 67 RNYGDVFIRGNN 78
>gi|156098737|ref|XP_001615384.1| U6 snRNA-associated Sm-like protein LSm6 [Plasmodium vivax Sal-1]
gi|148804258|gb|EDL45657.1| U6 snRNA-associated Sm-like protein LSm6, putative [Plasmodium
vivax]
Length = 86
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL S+ G V++KL G++Y+G L D YMNI + EE+++G+ K G+ F+R
Sbjct: 9 NPKPFLNSLAGNRVIIKLKWGMEYKGNLKSFDAYMNIRLANAEEWIHGEYKGTLGEIFLR 68
Query: 74 GNNVLYISTSKRT 86
NN+LYI K T
Sbjct: 69 CNNILYIREDKET 81
>gi|345795922|ref|XP_003434099.1| PREDICTED: small nuclear ribonucleoprotein F-like [Canis lupus
familiaris]
Length = 126
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 43/66 (65%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P F + G+PV VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 47 PKPFPNGLTGKPVRVKLKWGMEYQGYLESVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 106
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 107 NNVLYI 112
>gi|242064206|ref|XP_002453392.1| hypothetical protein SORBIDRAFT_04g005200 [Sorghum bicolor]
gi|241933223|gb|EES06368.1| hypothetical protein SORBIDRAFT_04g005200 [Sorghum bicolor]
Length = 86
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL ++ G+ V+VKL G++Y+G LA +D YMN+ + TEEY++GQ G+ IR
Sbjct: 8 PKPFLNNLTGKFVIVKLKWGMEYKGYLASVDSYMNLQLANTEEYIDGQFSGNLGEILIRC 67
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 68 NNVLYL 73
>gi|71032523|ref|XP_765903.1| small nuclear ribonucleoprotein F [Theileria parva strain Muguga]
gi|68352860|gb|EAN33620.1| small nuclear ribonucleoprotein F, putative [Theileria parva]
Length = 91
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG-DAFIR 73
P FL S+ G+ VVVKL G++Y+G L D YMN+ + EE+ NG LK K G D IR
Sbjct: 16 PKPFLTSLAGKTVVVKLKWGMEYKGTLKSFDSYMNLQLSDPEEWENGVLKGKLGNDILIR 75
Query: 74 GNNVLYISTSKRT 86
NN+LY+ S T
Sbjct: 76 CNNMLYVRESSET 88
>gi|392592920|gb|EIW82246.1| small nuclear ribo protein F, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 77
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL+ + G+PV V+L G++Y+G L DGYMN+ + TEE+ +G+ G+ FIR
Sbjct: 6 PKPFLQDLTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGALGEVFIRC 65
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 66 NNVLYI 71
>gi|393215596|gb|EJD01087.1| small nuclear ribonucleo protein SmF [Fomitiporia mediterranea
MF3/22]
Length = 85
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
T P FL+ + G+ V V+L G++Y+G L DGYMN+ + TEE+ +GQ G+
Sbjct: 4 VTPVNPKPFLQELTGKSVCVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGQSNGALGE 63
Query: 70 AFIRGNNVLYI 80
FIR NNVLYI
Sbjct: 64 VFIRCNNVLYI 74
>gi|336373399|gb|EGO01737.1| hypothetical protein SERLA73DRAFT_132214 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386230|gb|EGO27376.1| hypothetical protein SERLADRAFT_382079 [Serpula lacrymans var.
lacrymans S7.9]
Length = 80
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P F++ + G+PV V+L G++Y+G L DGYMN+ + TEE+ +G+ G+ FIR
Sbjct: 9 PKPFMQELTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGALGEVFIRC 68
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 69 NNVLYI 74
>gi|392568679|gb|EIW61853.1| small nuclear ribonucleo protein SmF [Trametes versicolor
FP-101664 SS1]
Length = 79
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 46/70 (65%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P +++ + G+PV V+L G++Y+G L DGYMN+ + TEE+ +G+ G+ FIR
Sbjct: 9 PKPYMQELTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGALGEVFIRC 68
Query: 75 NNVLYISTSK 84
NNVLYI +K
Sbjct: 69 NNVLYIREAK 78
>gi|159479232|ref|XP_001697697.1| small nuclear riboprotein F [Chlamydomonas reinhardtii]
gi|158274065|gb|EDO99849.1| small nuclear riboprotein F [Chlamydomonas reinhardtii]
Length = 85
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 44/66 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL+ + G+ V+VKL G++Y+G L D YMN+ + TEEY++GQ + G+ IR
Sbjct: 9 PKPFLQDLTGKQVIVKLKWGMEYKGYLVSTDSYMNLQLASTEEYIDGQFTGQLGEVLIRC 68
Query: 75 NNVLYI 80
NNV+Y+
Sbjct: 69 NNVMYL 74
>gi|357479653|ref|XP_003610112.1| Small nuclear ribonucleoprotein F [Medicago truncatula]
gi|355511167|gb|AES92309.1| Small nuclear ribonucleoprotein F [Medicago truncatula]
gi|388505566|gb|AFK40849.1| unknown [Medicago truncatula]
Length = 88
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 43/66 (65%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL ++ G+PV+VKL G++Y+G L +D YMN+ + TEEY+ G G+ IR
Sbjct: 8 PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRC 67
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 68 NNVLYM 73
>gi|320165888|gb|EFW42787.1| hypothetical protein CAOG_07919 [Capsaspora owczarzaki ATCC
30864]
Length = 85
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL S+ G+P++VKL G +Y G L DGYMN+ + T E+V+G+ ++ G+ IR
Sbjct: 9 PKPFLASLSGKPIIVKLKWGQEYHGTLLASDGYMNLQLGNTIEHVDGEETHRLGEVLIRC 68
Query: 75 NNVLYISTSKRTLA 88
NNVLY+ + A
Sbjct: 69 NNVLYVKAGEEQAA 82
>gi|495021|gb|AAA28445.1| membrane-associated protein [Drosophila melanogaster]
Length = 101
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 42/66 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G +Y+G L +DGYMN+ + TEE + G + G+ IR
Sbjct: 9 PKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEVLIRC 68
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 69 NNVLYI 74
>gi|307107458|gb|EFN55701.1| hypothetical protein CHLNCDRAFT_23084, partial [Chlorella
variabilis]
Length = 81
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 43/66 (65%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+ V+VKL G++Y+G L +D YMN+ + TEEY++GQ G+ IR
Sbjct: 6 PKPFLNDLTGKQVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEYIDGQFTGNLGEVLIRC 65
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 66 NNVLYL 71
>gi|325190943|emb|CCA25428.1| small nuclear ribonucleoprotein F putative [Albugo laibachii Nc14]
Length = 134
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+ VVV+L G++Y+G+L +D YMN+ + +EEYVNG L G+ IR
Sbjct: 47 PKPFLTGLTGKTVVVRLKWGMEYKGVLVSVDSYMNLQLAGSEEYVNGDLAGNLGEVLIRC 106
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 107 NNVLYL 112
>gi|242056189|ref|XP_002457240.1| hypothetical protein SORBIDRAFT_03g003900 [Sorghum bicolor]
gi|241929215|gb|EES02360.1| hypothetical protein SORBIDRAFT_03g003900 [Sorghum bicolor]
Length = 86
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL ++ G+ V+VKL G++Y+G L +D YMN+ + TEEY++GQ G+ IR
Sbjct: 8 PKPFLNNLTGKTVIVKLKWGMEYKGYLTSVDSYMNLQLANTEEYIDGQFSGNLGEILIRC 67
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 68 NNVLYL 73
>gi|302843278|ref|XP_002953181.1| hypothetical protein VOLCADRAFT_109863 [Volvox carteri f.
nagariensis]
gi|300261568|gb|EFJ45780.1| hypothetical protein VOLCADRAFT_109863 [Volvox carteri f.
nagariensis]
Length = 85
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 44/66 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL+ + G+ V+VKL G++Y+G L D YMN+ + TEE+++GQ + G+ IR
Sbjct: 9 PKPFLQDLTGKQVIVKLKWGMEYKGYLVSTDAYMNLQLASTEEFIDGQFTGQLGEVLIRC 68
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 69 NNVLYL 74
>gi|255579817|ref|XP_002530746.1| small nuclear ribonucleoprotein f, putative [Ricinus communis]
gi|223529710|gb|EEF31652.1| small nuclear ribonucleoprotein f, putative [Ricinus communis]
Length = 88
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL ++ G+ V+VKL G++Y+G LA +D YMN+ + TEE+++GQ G+ IR
Sbjct: 8 PKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEFIDGQFTGNLGEILIRC 67
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 68 NNVLYL 73
>gi|308808123|ref|XP_003081372.1| Ypt/Rab GTPase activating protein (ISS) [Ostreococcus tauri]
gi|116059834|emb|CAL55541.1| Ypt/Rab GTPase activating protein (ISS) [Ostreococcus tauri]
Length = 836
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 48/79 (60%)
Query: 2 STGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNG 61
ST + + P FL ++ G+ V V+L G++YRG L D YMN+ + TEEY++G
Sbjct: 751 STSALRRMSAPINPKPFLAALTGKRVAVRLKWGMEYRGFLVSTDAYMNLQLASTEEYIDG 810
Query: 62 QLKNKYGDAFIRGNNVLYI 80
+L+ G+ IR NNV+Y+
Sbjct: 811 ELQGALGEVLIRCNNVMYL 829
>gi|300116730|ref|NP_001177858.1| small nuclear ribonucleoprotein F [Nasonia vitripennis]
Length = 88
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 43/66 (65%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G +Y+G L +DGYMN+ + EE+++G L G+ IR
Sbjct: 9 PKPFLNGLTGKPVMVKLKWGHEYKGYLVSVDGYMNVQLANAEEHIDGNLTGSLGEVLIRC 68
Query: 75 NNVLYI 80
NNV+YI
Sbjct: 69 NNVMYI 74
>gi|402586897|gb|EJW80834.1| small nuclear ribonucleoprotein F [Wuchereria bancrofti]
Length = 94
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PVV KL G++Y+G L +DGYMN+ + EEY++G+ G+ IR
Sbjct: 18 PKPFLNGLTGKPVVCKLKWGMEYKGYLVSVDGYMNLQLANAEEYIDGRHTGDVGEVLIRC 77
Query: 75 NNVLYISTSKRT 86
NNVL++ ++ +
Sbjct: 78 NNVLWVGGAEES 89
>gi|219118381|ref|XP_002179965.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408222|gb|EEC48156.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 87
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 43/67 (64%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+ V VKL G++Y+G+LA D YMN+ + TEE+++GQ GD IR
Sbjct: 8 PKPFLVDLTGKTVKVKLKWGMEYQGVLAAADAYMNLQLSATEEFLDGQFAGFLGDVLIRC 67
Query: 75 NNVLYIS 81
NNVLY+
Sbjct: 68 NNVLYVQ 74
>gi|209736642|gb|ACI69190.1| Small nuclear ribonucleoprotein F [Salmo salar]
gi|303661867|gb|ADM16052.1| Small nuclear ribonucleoprotein F [Salmo salar]
Length = 87
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G +D YMN+ + TEEYV+G L G+ +R
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYPVSVDSYMNMQLANTEEYVDGALAGHLGEVLVRC 66
Query: 75 NNVLYISTSKRTLADG 90
NNVL+I + DG
Sbjct: 67 NNVLFIRGVEEEEEDG 82
>gi|312082117|ref|XP_003143311.1| hypothetical protein LOAG_07730 [Loa loa]
gi|307761525|gb|EFO20759.1| small nuclear ribonucleoprotein F [Loa loa]
Length = 85
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PVV KL G++Y+G L +DGYMN+ + EEY++G+ G+ IR
Sbjct: 9 PKPFLNGLTGKPVVCKLKWGMEYKGYLVSVDGYMNLQLANAEEYIDGRHTGDVGEVLIRC 68
Query: 75 NNVLYISTSKRT 86
NNVL++ ++ +
Sbjct: 69 NNVLWVGGAEES 80
>gi|307186677|gb|EFN72155.1| Small nuclear ribonucleoprotein F [Camponotus floridanus]
Length = 84
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G +Y+G L +DGYMN+ + TEE+++G G+ IR
Sbjct: 5 PKPFLNGLTGKPVMVKLKWGHEYKGYLVSVDGYMNLQLANTEEHIDGSCTGNLGEVLIRC 64
Query: 75 NNVLYISTSKRTLADG 90
NNV+YI + + +G
Sbjct: 65 NNVMYIRGVEESDEEG 80
>gi|209733744|gb|ACI67741.1| Small nuclear ribonucleoprotein F [Salmo salar]
gi|303668331|gb|ADM16295.1| Small nuclear ribonucleoprotein F [Salmo salar]
Length = 87
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL ++Y+G L +D YMN+ + TEEYV+G L G+ +R
Sbjct: 7 PKPFLNGLTGKPVMVKLKWDMEYKGYLVSVDSYMNMQLANTEEYVDGALAGHLGEVLVRC 66
Query: 75 NNVLYISTSKRTLADG 90
NNVL+I + DG
Sbjct: 67 NNVLFIRGVEEEEEDG 82
>gi|168017152|ref|XP_001761112.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687798|gb|EDQ74179.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 87
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +D YMN+ + TEE+V+G G+ IR
Sbjct: 8 PKPFLNDLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEFVDGAFTGNLGEVLIRC 67
Query: 75 NNVLYI 80
NNV+Y+
Sbjct: 68 NNVMYL 73
>gi|392580438|gb|EIW73565.1| hypothetical protein TREMEDRAFT_67422 [Tremella mesenterica DSM
1558]
Length = 86
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 45/72 (62%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL+ + G+ V VKL G++YRG L DGYMN+ + TEE NG+ G+ FIR
Sbjct: 9 PKPFLQELTGKIVDVKLKWGLEYRGYLVSTDGYMNLQLANTEEMENGKSNGTLGEVFIRC 68
Query: 75 NNVLYISTSKRT 86
NNVLY+ +K T
Sbjct: 69 NNVLYLGEAKDT 80
>gi|403416704|emb|CCM03404.1| predicted protein [Fibroporia radiculosa]
Length = 88
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P F++ + G+PV V+L G++Y+G L DGYMN+ + TEE+ +G+ G+ FIR
Sbjct: 9 PKPFIQELTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGALGEVFIRC 68
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 69 NNVLYI 74
>gi|332031555|gb|EGI71027.1| Small nuclear ribonucleoprotein F [Acromyrmex echinatior]
Length = 88
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G +Y+G L +DGYMN+ + TEE++ G G+ IR
Sbjct: 9 PKPFLNGLTGKPVMVKLKWGHEYKGYLVSVDGYMNLQLANTEEHIEGNCTGNLGEVLIRC 68
Query: 75 NNVLYISTSKRTLADG 90
NNV+YI + + +G
Sbjct: 69 NNVMYIRGVEESDEEG 84
>gi|242208547|ref|XP_002470124.1| predicted protein [Postia placenta Mad-698-R]
gi|220730876|gb|EED84727.1| predicted protein [Postia placenta Mad-698-R]
Length = 71
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P F++ + G+PV V+L G++Y+G L DGYMN+ + TEE+ +G+ G+ FIR
Sbjct: 6 PKPFIQELTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGALGEVFIRC 65
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 66 NNVLYI 71
>gi|168049785|ref|XP_001777342.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671318|gb|EDQ57872.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 85
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +D YMN+ + TEE+V+G G+ IR
Sbjct: 6 PKPFLNDLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEFVDGAFTGNLGEVLIRC 65
Query: 75 NNVLYI 80
NNV+Y+
Sbjct: 66 NNVMYL 71
>gi|403172479|ref|XP_003331594.2| small nuclear ribonucleoprotein F [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375169870|gb|EFP87175.2| small nuclear ribonucleoprotein F [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 121
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL+ + G+ VVKL G++Y+G L +D YMN+ + TEEY NGQ G+ FIR
Sbjct: 9 PKPFLQDLTGKECVVKLKWGMEYKGYLVSVDNYMNLQLANTEEYQNGQSVGSLGEVFIRC 68
Query: 75 NNVLY----ISTSKRTLA 88
NNVLY S KR L+
Sbjct: 69 NNVLYSTNESSKCKRKLS 86
>gi|221120213|ref|XP_002166685.1| PREDICTED: small nuclear ribonucleoprotein F-like [Hydra
magnipapillata]
Length = 89
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 44/66 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV++KL G++Y+G L +DGYMN+ + +EE+++G G+ IR
Sbjct: 8 PKPFLNGLTGKPVMIKLKWGMEYKGYLVSVDGYMNMQLANSEEFIDGTFTGNLGEILIRC 67
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 68 NNVLYI 73
>gi|449550066|gb|EMD41031.1| hypothetical protein CERSUDRAFT_37798, partial [Ceriporiopsis
subvermispora B]
Length = 77
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P F++ + G+PV V+L G++Y+G L DGYMN+ + TEE+ +G+ G+ FIR
Sbjct: 6 PKPFIQELTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGALGEVFIRC 65
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 66 NNVLYI 71
>gi|22024001|ref|NP_523708.2| small ribonucleoprotein particle protein SmF [Drosophila
melanogaster]
gi|125807333|ref|XP_001360364.1| GA14154 [Drosophila pseudoobscura pseudoobscura]
gi|194754150|ref|XP_001959360.1| GF12081 [Drosophila ananassae]
gi|194883764|ref|XP_001975970.1| GG22599 [Drosophila erecta]
gi|195056665|ref|XP_001995140.1| GH22983 [Drosophila grimshawi]
gi|195122320|ref|XP_002005660.1| GI18952 [Drosophila mojavensis]
gi|195149774|ref|XP_002015830.1| GL11267 [Drosophila persimilis]
gi|195333646|ref|XP_002033498.1| GM20378 [Drosophila sechellia]
gi|195381309|ref|XP_002049395.1| GJ21558 [Drosophila virilis]
gi|195436262|ref|XP_002066088.1| GK22120 [Drosophila willistoni]
gi|195485487|ref|XP_002091113.1| GE13467 [Drosophila yakuba]
gi|195551853|ref|XP_002076311.1| GD15243 [Drosophila simulans]
gi|195551862|ref|XP_002076315.1| DebB [Drosophila simulans]
gi|29337191|sp|Q24297.2|RUXF_DROME RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F;
AltName: Full=Membrane-associated protein Deb-B;
AltName: Full=Sm protein F; Short=Sm-F; Short=SmF
gi|21430088|gb|AAM50722.1| GM23968p [Drosophila melanogaster]
gi|21645477|gb|AAF58559.2| small ribonucleoprotein particle protein SmF [Drosophila
melanogaster]
gi|54635536|gb|EAL24939.1| GA14154 [Drosophila pseudoobscura pseudoobscura]
gi|190620658|gb|EDV36182.1| GF12081 [Drosophila ananassae]
gi|190659157|gb|EDV56370.1| GG22599 [Drosophila erecta]
gi|193899346|gb|EDV98212.1| GH22983 [Drosophila grimshawi]
gi|193910728|gb|EDW09595.1| GI18952 [Drosophila mojavensis]
gi|194109677|gb|EDW31720.1| GL11267 [Drosophila persimilis]
gi|194125468|gb|EDW47511.1| GM20378 [Drosophila sechellia]
gi|194144192|gb|EDW60588.1| GJ21558 [Drosophila virilis]
gi|194162173|gb|EDW77074.1| GK22120 [Drosophila willistoni]
gi|194177214|gb|EDW90825.1| GE13467 [Drosophila yakuba]
gi|194201960|gb|EDX15536.1| GD15243 [Drosophila simulans]
gi|194201964|gb|EDX15540.1| DebB [Drosophila simulans]
gi|220956990|gb|ACL91038.1| DebB-PA [synthetic construct]
Length = 88
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 42/66 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G +Y+G L +DGYMN+ + TEE + G + G+ IR
Sbjct: 9 PKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEVLIRC 68
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 69 NNVLYI 74
>gi|307213128|gb|EFN88650.1| Small nuclear ribonucleoprotein F [Harpegnathos saltator]
Length = 88
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G +Y+G L +DGYMN+ + TEE++ G G+ IR
Sbjct: 9 PKPFLNGLTGKPVIVKLKWGHEYKGYLVSVDGYMNLQLANTEEHIEGTCTGNVGEVLIRC 68
Query: 75 NNVLYI 80
NNV+YI
Sbjct: 69 NNVMYI 74
>gi|110760095|ref|XP_001120305.1| PREDICTED: small nuclear ribonucleoprotein F isoform 1 [Apis
mellifera]
gi|328782586|ref|XP_003250168.1| PREDICTED: small nuclear ribonucleoprotein F isoform 2 [Apis
mellifera]
gi|380015356|ref|XP_003691669.1| PREDICTED: small nuclear ribonucleoprotein F-like [Apis florea]
gi|383862941|ref|XP_003706941.1| PREDICTED: small nuclear ribonucleoprotein F-like [Megachile
rotundata]
Length = 88
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 43/66 (65%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G +Y+G L +DGYMN+ + TEE+++G G+ IR
Sbjct: 9 PKPFLNGLTGKPVMVKLKWGHEYKGYLVSVDGYMNLQLANTEEHIDGNCTGNLGEVLIRC 68
Query: 75 NNVLYI 80
NNV+YI
Sbjct: 69 NNVMYI 74
>gi|402217602|gb|EJT97682.1| small nuclear ribo protein F [Dacryopinax sp. DJM-731 SS1]
Length = 89
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
MS+G G T P F++ + G+ V+V+L G +Y+G L DG+MN+ + TEE+ +
Sbjct: 1 MSSG--PGPVTPVNPKPFIQDLTGKQVLVRLKWGFEYKGYLVSTDGFMNLQLANTEEFQD 58
Query: 61 GQLKNKYGDAFIRGNNVLYI 80
G+ G+ FIR NNVLYI
Sbjct: 59 GKSNGALGEVFIRCNNVLYI 78
>gi|42415804|gb|AAS15770.1| DebB [Drosophila simulans]
Length = 79
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 42/66 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G +Y+G L +DGYMN+ + TEE + G + G+ IR
Sbjct: 5 PKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEVLIRC 64
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 65 NNVLYI 70
>gi|443924091|gb|ELU43165.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 81
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 43/66 (65%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL+ + G+PV V+L G++Y+G L D YMN+ + TEE+ +G+ G+ FIR
Sbjct: 9 PKPFLQELTGKPVFVRLKWGLEYKGYLVSTDSYMNLQLANTEEFEDGKSNGALGEVFIRC 68
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 69 NNVLYI 74
>gi|224003119|ref|XP_002291231.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973007|gb|EED91338.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 112
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+ V V+L G +Y+G LA D YMN+ +E+TEE+++GQ G+ IR
Sbjct: 32 PKPFLADLTGKHVRVRLKWGQEYQGKLASSDAYMNLQLEETEEFIDGQFAGTLGEVLIRC 91
Query: 75 NNVLYISTS 83
NNVLY+ +
Sbjct: 92 NNVLYVKAA 100
>gi|340368862|ref|XP_003382969.1| PREDICTED: small nuclear ribonucleoprotein F-like [Amphimedon
queenslandica]
Length = 87
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+ V+VKL G++Y+G L D YMN+ + TEEY++G L G+ IR
Sbjct: 9 PKPFLSGLTGKSVIVKLKWGMEYKGYLVSTDSYMNVQLANTEEYIDGSLTGNLGEVLIRC 68
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 69 NNVLYV 74
>gi|340719936|ref|XP_003398400.1| PREDICTED: small nuclear ribonucleoprotein F-like [Bombus
terrestris]
gi|350410809|ref|XP_003489148.1| PREDICTED: small nuclear ribonucleoprotein F-like [Bombus
impatiens]
Length = 88
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G +Y+G L +DGYMN+ + TEE++ G G+ IR
Sbjct: 9 PKPFLNGLTGKPVMVKLKWGHEYKGYLVSVDGYMNLQLANTEEHIEGNCTGNLGEVLIRC 68
Query: 75 NNVLYI 80
NNV+YI
Sbjct: 69 NNVMYI 74
>gi|403284568|ref|XP_003933637.1| PREDICTED: uncharacterized protein LOC101050458 [Saimiri
boliviensis boliviensis]
Length = 282
Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PVVVKL GV+++G L +DGY N+ + TEEY+ G L + IR
Sbjct: 203 PKPFLSGLTGKPVVVKLRWGVEFKGCLVSVDGYKNVQLANTEEYIGGALSGHLWEVLIRW 262
Query: 75 NNVLYI 80
NN+L+I
Sbjct: 263 NNILHI 268
>gi|403220738|dbj|BAM38871.1| small nuclear ribonucleoprotein f [Theileria orientalis strain
Shintoku]
Length = 84
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG-DAFIR 73
P FL S+ G+ VVVKL G++Y+G L D YMN+ ++ EE+ NG LK K G D IR
Sbjct: 13 PKPFLTSLAGKAVVVKLKWGMEYKGTLKSFDSYMNLQLQDPEEWENGVLKGKLGNDILIR 72
Query: 74 GNNVLYI 80
NN+LY+
Sbjct: 73 CNNMLYV 79
>gi|326512700|dbj|BAK03257.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 87
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL+++ G+ V+VKL G++Y+G L +D YMN+ + TEE+++GQ GD IR
Sbjct: 8 PKPFLQNLTGKMVIVKLKWGMEYKGYLVSVDSYMNLQLSGTEEFIDGQCSGNLGDILIRC 67
Query: 75 NNVLYI 80
NNV+Y+
Sbjct: 68 NNVMYL 73
>gi|153792507|ref|NP_001093276.1| small nuclear ribonucleoprotein protein F [Bombyx mori]
gi|95102986|gb|ABF51434.1| small nuclear ribonucleoprotein protein F [Bombyx mori]
Length = 88
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%)
Query: 8 GSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKY 67
+A P FL S+ G+ V+VKL G +Y+G+L DGYMN+ + TEE V+G
Sbjct: 2 AAAMPINPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNL 61
Query: 68 GDAFIRGNNVLYI 80
G+ IR NNVLY+
Sbjct: 62 GEVLIRCNNVLYV 74
>gi|428171321|gb|EKX40239.1| hypothetical protein GUITHDRAFT_43352, partial [Guillardia theta
CCMP2712]
Length = 70
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G VVVKL G++Y+G+L D YMNI +E T+E++ Q + G+ IR
Sbjct: 4 PKPFLADLTGLSVVVKLKWGMEYKGVLKSTDNYMNIQLENTQEFIEDQFQGDLGEVLIRC 63
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 64 NNVLYV 69
>gi|302782820|ref|XP_002973183.1| hypothetical protein SELMODRAFT_228181 [Selaginella
moellendorffii]
gi|302789802|ref|XP_002976669.1| hypothetical protein SELMODRAFT_228413 [Selaginella
moellendorffii]
gi|300155707|gb|EFJ22338.1| hypothetical protein SELMODRAFT_228413 [Selaginella
moellendorffii]
gi|300158936|gb|EFJ25557.1| hypothetical protein SELMODRAFT_228181 [Selaginella
moellendorffii]
Length = 84
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+ V+VKL G++Y+G L +D YMN+ + TEE+++GQ G+ IR
Sbjct: 8 PKPFLNELTGKAVMVKLKWGMEYKGFLISVDSYMNLQLGNTEEFIDGQFAGNLGEVLIRC 67
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 68 NNVLYL 73
>gi|91083615|ref|XP_969779.1| PREDICTED: similar to AGAP002658-PA [Tribolium castaneum]
gi|270007843|gb|EFA04291.1| hypothetical protein TcasGA2_TC014582 [Tribolium castaneum]
Length = 88
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
+A P FL + G+ V+VKL G +Y+G L +DGYMN+ + TEE+++G + G
Sbjct: 3 TAMPINPKPFLNGLTGKAVMVKLKWGHEYKGYLVSVDGYMNLQLANTEEFIDGNMTGNLG 62
Query: 69 DAFIRGNNVLYI 80
+ IR NNVL+I
Sbjct: 63 EVLIRCNNVLFI 74
>gi|357605279|gb|EHJ64538.1| small nuclear ribonucleoprotein F [Danaus plexippus]
Length = 88
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 42/66 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL S+ G+ V+VKL G +Y+G+L DGYMN+ + TEE V+G G+ IR
Sbjct: 9 PKPFLNSLTGKAVLVKLKWGHEYKGLLVSADGYMNLQLANTEEIVDGSCTGNLGEVLIRC 68
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 69 NNVLYV 74
>gi|17557029|ref|NP_498708.1| Protein SNR-5 [Caenorhabditis elegans]
gi|466158|sp|P34659.1|RUXF_CAEEL RecName: Full=Probable small nuclear ribonucleoprotein F;
Short=snRNP-F; AltName: Full=Sm protein F; Short=Sm-F;
Short=SmF
gi|351020571|emb|CCD62546.1| Protein SNR-5 [Caenorhabditis elegans]
Length = 85
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL S+ G+ VV KL G++Y+G+L +D YMN+ + EEY++G + G+ IR
Sbjct: 9 PKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRC 68
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 69 NNVLYV 74
>gi|444314597|ref|XP_004177956.1| hypothetical protein TBLA_0A06450 [Tetrapisispora blattae CBS
6284]
gi|387510995|emb|CCH58437.1| hypothetical protein TBLA_0A06450 [Tetrapisispora blattae CBS
6284]
Length = 78
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 51/77 (66%), Gaps = 6/77 (7%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQ-TEEYVNGQ--LKN 65
S+T T DFL SI GRPV VKL+SG+ Y+G L +DG+MN+A+ TE Y N L +
Sbjct: 2 SSTVST--DFLSSIIGRPVSVKLHSGMLYQGKLESIDGFMNVALSNATEHYENSNNGLLH 59
Query: 66 KY-GDAFIRGNNVLYIS 81
KY + F+RG VLYIS
Sbjct: 60 KYPNEVFVRGTQVLYIS 76
>gi|303274735|ref|XP_003056683.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461035|gb|EEH58328.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 84
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+ ++VKL G++Y+G L D YMN+ + TEEY++G+ G+ IR
Sbjct: 9 PKPFLNQLTGKAIIVKLKWGMEYKGYLVSTDAYMNLQLASTEEYIDGKFAGNLGEVLIRC 68
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 69 NNVLYL 74
>gi|156844203|ref|XP_001645165.1| hypothetical protein Kpol_1062p15 [Vanderwaltozyma polyspora DSM
70294]
gi|189028754|sp|A7TK72.1|LSM6_VANPO RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|156115823|gb|EDO17307.1| hypothetical protein Kpol_1062p15 [Vanderwaltozyma polyspora DSM
70294]
Length = 83
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV--NGQLKNK 66
S TT FL +I G+PV VKL SG+ Y+G L +DG+MN+A+ T E+ N + +
Sbjct: 6 SGTTSVSTQFLANIIGKPVSVKLYSGMMYKGKLESIDGFMNVALSNTSEHFESNAHMLKR 65
Query: 67 Y-GDAFIRGNNVLYIS 81
Y D F+RG V+YIS
Sbjct: 66 YENDVFLRGTQVMYIS 81
>gi|397615466|gb|EJK63449.1| hypothetical protein THAOC_15885, partial [Thalassiosira oceanica]
Length = 184
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+ V V+L G +Y+G LA D YMN+ +E TEE++ GQ G+ IR
Sbjct: 106 PKPFLADLTGKHVRVRLKWGQEYQGKLASSDAYMNLQLEDTEEFIEGQFAGTLGEVLIRC 165
Query: 75 NNVLYISTS 83
NNVLY+ +
Sbjct: 166 NNVLYVKAT 174
>gi|149246105|ref|XP_001527522.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146447476|gb|EDK41864.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 80
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 44/62 (70%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P+ FL I G V VKL++GV+Y+G L +DGYMN+A+E +E ++ ++ YGD F+RG
Sbjct: 12 PSKFLGGIIGSSVKVKLHNGVEYQGDLQTIDGYMNVALENGKEVIDNKVTKHYGDVFLRG 71
Query: 75 NN 76
NN
Sbjct: 72 NN 73
>gi|328870612|gb|EGG18985.1| adenosine deaminase acting on tRNA 1 [Dictyostelium fasciculatum]
Length = 639
Score = 68.2 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 14 TPADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+P FL ++G+ V V+L G++YRGILA +D YMN+ + TEE+++G + + G+ I
Sbjct: 563 SPKPFLYELKGKKVAVRLKWGGMEYRGILASVDNYMNLQLAATEEWIDGTMIDTLGEVLI 622
Query: 73 RGNNVLYI 80
R NNVLYI
Sbjct: 623 RCNNVLYI 630
>gi|281211679|gb|EFA85841.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 85
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 14 TPADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+P FL ++G+ V V+L G ++YRGILA +D YMN+ + TEE+++G + + G+ I
Sbjct: 8 SPKPFLYELKGKKVAVRLKWGGMEYRGILASVDNYMNLQLAATEEWIDGAIIDTLGEVLI 67
Query: 73 RGNNVLYI 80
R NNVLY+
Sbjct: 68 RCNNVLYV 75
>gi|410080163|ref|XP_003957662.1| hypothetical protein KAFR_0E03760 [Kazachstania africana CBS 2517]
gi|372464248|emb|CCF58527.1| hypothetical protein KAFR_0E03760 [Kazachstania africana CBS 2517]
Length = 124
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV----NGQLK 64
S T+ FL I G+PV VKL+SG+ Y G+L +DG+MN+A+ Q E+ NG L
Sbjct: 46 SETSTVSTQFLSDIIGKPVNVKLHSGMLYTGLLQSIDGFMNVALAQVTEHYESKENGLLT 105
Query: 65 NKYGDAFIRGNNVLYIS 81
D F+RG V+YIS
Sbjct: 106 KYNSDVFLRGTQVMYIS 122
>gi|365982027|ref|XP_003667847.1| hypothetical protein NDAI_0A04480 [Naumovozyma dairenensis CBS
421]
gi|343766613|emb|CCD22604.1| hypothetical protein NDAI_0A04480 [Naumovozyma dairenensis CBS
421]
Length = 83
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 52/85 (61%), Gaps = 8/85 (9%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV- 59
MST E S +T+ FL +I G+PV VKL SG+ Y G L +DG+MN+A+ T E+
Sbjct: 1 MSTKTETTSVSTQ----FLSNIIGKPVNVKLYSGMLYNGRLESIDGFMNVALSNTTEHYE 56
Query: 60 ---NGQLKNKYGDAFIRGNNVLYIS 81
NG LK+ D F+RG V+YIS
Sbjct: 57 NSSNGLLKSYNSDVFLRGTQVMYIS 81
>gi|393246346|gb|EJD53855.1| mRNA processing-related protein [Auricularia delicata TFB-10046
SS5]
Length = 81
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL+ + G+ V V+L G++YRG L D YMN+ + EEY +G+ G+ FIR
Sbjct: 9 PKPFLQDLTGKSVWVRLKWGLEYRGFLVSTDAYMNLQLANAEEYQDGKSNGTLGEIFIRC 68
Query: 75 NNVLYISTSK 84
NNVLYI K
Sbjct: 69 NNVLYIREDK 78
>gi|290561351|gb|ADD38076.1| Small nuclear ribonucleoprotein F [Lepeophtheirus salmonis]
Length = 86
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
A P FL + G+ V+VKL G +Y+G L DGYMN+ + TEEY++G G+
Sbjct: 2 AMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSTDGYMNVQLANTEEYIDGNCTGTLGE 61
Query: 70 AFIRGNNVLYI 80
+R NNVLYI
Sbjct: 62 VLVRCNNVLYI 72
>gi|443897316|dbj|GAC74657.1| small nuclear ribonucleoprotein [Pseudozyma antarctica T-34]
Length = 82
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL+ G+PV+V+L G++Y+G L D YMN+ + TEE+ +G+ G+ FIR
Sbjct: 9 PKPFLQLQTGKPVLVRLKWGMEYKGFLVSTDSYMNLQLANTEEFQDGKSNGMLGEVFIRC 68
Query: 75 NNVLYISTSKRTLAD 89
NNVLY+ R L D
Sbjct: 69 NNVLYL----RELTD 79
>gi|358339525|dbj|GAA47572.1| small nuclear ribonucleoprotein F [Clonorchis sinensis]
Length = 83
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL SI G+ V+VKL G++Y+G L +D YMN+ + T+EY++ G+ IR
Sbjct: 8 PKPFLSSITGKQVIVKLKWGMEYKGYLVSVDRYMNLQLHSTDEYIDNCHTGSLGEVLIRC 67
Query: 75 NNVLYISTSKRTLAD 89
NNVLYI +D
Sbjct: 68 NNVLYIRECDDEFSD 82
>gi|367013088|ref|XP_003681044.1| hypothetical protein TDEL_0D02490 [Torulaspora delbrueckii]
gi|359748704|emb|CCE91833.1| hypothetical protein TDEL_0D02490 [Torulaspora delbrueckii]
Length = 82
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 48/75 (64%), Gaps = 4/75 (5%)
Query: 11 TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQ-TEEYVNGQ---LKNK 66
T+ + FL I G+PV VKL+SG+ Y G L +DG+MN+A+ + TE Y NG L+N
Sbjct: 6 TSSVSSQFLSEIIGKPVNVKLHSGMLYSGRLESIDGFMNVALSKVTEHYENGHNGLLRNY 65
Query: 67 YGDAFIRGNNVLYIS 81
D F+RG V+YIS
Sbjct: 66 NTDVFLRGTQVMYIS 80
>gi|343427163|emb|CBQ70691.1| probable Small nuclear ribonucleoprotein F [Sporisorium reilianum
SRZ2]
Length = 82
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL+ G+PV+V+L G++Y+G L D YMN+ + TEE+ +G+ G+ FIR
Sbjct: 9 PKPFLQLQTGKPVLVRLKWGMEYKGFLVSTDSYMNLQLANTEEFQDGKSNGMLGEVFIRC 68
Query: 75 NNVLYISTSKRTLAD 89
NNVLY+ R L D
Sbjct: 69 NNVLYL----RELPD 79
>gi|268575376|ref|XP_002642667.1| C. briggsae CBR-SNR-5 protein [Caenorhabditis briggsae]
Length = 86
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL S+ G+ VV KL G++Y+GIL +D YMN+ + EEY++G G+ IR
Sbjct: 9 PKPFLNSLTGKNVVCKLKWGMEYKGILVAVDSYMNLQLANAEEYIDGNNTGNLGEILIRC 68
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 69 NNVLYV 74
>gi|395833472|ref|XP_003789756.1| PREDICTED: LOW QUALITY PROTEIN: protein MB21D1 [Otolemur
garnettii]
Length = 718
Score = 67.4 bits (163), Expect = 9e-10, Method: Composition-based stats.
Identities = 31/43 (72%), Positives = 37/43 (86%)
Query: 24 GRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK 66
G VVVK NSGVDYRG+LA DGY+N A+E+TEEYVNG++KNK
Sbjct: 2 GWSVVVKSNSGVDYRGVLARTDGYVNTALEETEEYVNGEVKNK 44
>gi|330791644|ref|XP_003283902.1| hypothetical protein DICPUDRAFT_86021 [Dictyostelium purpureum]
gi|325086173|gb|EGC39567.1| hypothetical protein DICPUDRAFT_86021 [Dictyostelium purpureum]
Length = 85
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 14 TPADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+P FL ++G+ + V+L G++YRGIL+ +D YMN+ M TEE+++G + + G+ I
Sbjct: 8 SPKPFLYGLKGKKIAVRLKWGGMEYRGILSSVDSYMNLQMLATEEWIDGAVMGQLGEVLI 67
Query: 73 RGNNVLYI 80
R NNVLYI
Sbjct: 68 RCNNVLYI 75
>gi|225709496|gb|ACO10594.1| Small nuclear ribonucleoprotein F [Caligus rogercresseyi]
Length = 86
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
A P FL + G+ V+VKL G +Y+G L DGYMN+ + TEEY++G G+
Sbjct: 2 AMPINPKPFLNELTGKAVMVKLKWGHEYKGYLVSSDGYMNVQLANTEEYIDGNCTGTLGE 61
Query: 70 AFIRGNNVLYI 80
+R NNVLYI
Sbjct: 62 VLVRCNNVLYI 72
>gi|341900660|gb|EGT56595.1| CBN-SNR-5 protein [Caenorhabditis brenneri]
Length = 86
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL S+ G+ VV KL G++Y+G+L +D YMN+ + EEY++G G+ IR
Sbjct: 9 PKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNNTGNLGEILIRC 68
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 69 NNVLYV 74
>gi|401885054|gb|EJT49185.1| mRNA processing-related protein [Trichosporon asahii var. asahii
CBS 2479]
Length = 129
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 42/69 (60%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL+ + G+ V VKL G++YRG L DGY N+ + EE NG+ + G+ FIR
Sbjct: 9 PRPFLQDLTGKTVTVKLKWGLEYRGFLVSTDGYFNLQLTGAEEMENGKSNGQLGEVFIRC 68
Query: 75 NNVLYISTS 83
NNVLYI +
Sbjct: 69 NNVLYIRMA 77
>gi|449706044|gb|EMD45970.1| U6 snRNP-associated protein Lsm6, putative [Entamoeba histolytica
KU27]
Length = 74
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
++TT P F K +KLN G ++G + +DG MNI +E EY+NG N+Y
Sbjct: 3 NSTTSPPIQFFKEALFHECSIKLNDGTIFKGKMTLIDGLMNIVLENAIEYINGNKDNEYP 62
Query: 69 DAFIRGNNVLY 79
+ FIRGNN LY
Sbjct: 63 ECFIRGNNSLY 73
>gi|403377342|gb|EJY88664.1| hypothetical protein OXYTRI_00119 [Oxytricha trifallax]
Length = 89
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 22 IRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEY-VNGQLKNKYGDAFIRGNNVLYI 80
I+G+ V+VKLN G YRG CLDG +N +E+ EE +G++ +YGD FIRGNNV YI
Sbjct: 2 IKGKQVIVKLNDGTIYRGTYICLDGNLNTVLEKCEELNKDGRVLGRYGDIFIRGNNVCYI 61
Query: 81 S 81
+
Sbjct: 62 A 62
>gi|321257666|ref|XP_003193669.1| mRNA processing-related protein [Cryptococcus gattii WM276]
gi|317460139|gb|ADV21882.1| mRNA processing-related protein, putative [Cryptococcus gattii
WM276]
Length = 84
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL+ + G+ V V+L G++YRG L DGYMN+ + TEE NG+ G+ IR
Sbjct: 9 PKPFLQDLTGKVVYVRLKWGLEYRGYLVSTDGYMNLQLANTEEIENGKSNGALGEVLIRC 68
Query: 75 NNVLYISTSKRTLADG 90
NNVLYI T ADG
Sbjct: 69 NNVLYIRWVA-TSADG 83
>gi|302309610|ref|XP_002999513.1| hypothetical protein [Candida glabrata CBS 138]
gi|196049225|emb|CAR57997.1| unnamed protein product [Candida glabrata]
Length = 115
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV---NGQL 63
+ A FL +I G+PV VKL SG+ Y G+L +DG+MN+A+ +T E+ N L
Sbjct: 35 RAMAEESVSTQFLSNIIGKPVHVKLYSGMLYSGVLESIDGFMNVALSETREHYEHPNNNL 94
Query: 64 KNKYG-DAFIRGNNVLYIS 81
KY D F+RG V+YIS
Sbjct: 95 LKKYASDVFLRGTQVMYIS 113
>gi|403372449|gb|EJY86123.1| hypothetical protein OXYTRI_15885 [Oxytricha trifallax]
Length = 89
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 22 IRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEY-VNGQLKNKYGDAFIRGNNVLYI 80
I+G+ V+VKLN G YRG CLDG +N +E+ EE +G++ +YGD FIRGNNV YI
Sbjct: 2 IKGKQVIVKLNDGTIYRGTYICLDGNLNTVLEKCEELNKDGRVLGRYGDIFIRGNNVCYI 61
Query: 81 S 81
+
Sbjct: 62 A 62
>gi|403215083|emb|CCK69583.1| hypothetical protein KNAG_0C04820 [Kazachstania naganishii CBS
8797]
Length = 84
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 46/81 (56%), Gaps = 9/81 (11%)
Query: 10 ATTKTPAD-----FLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV----N 60
AT AD FL I G+PV VKL+SG+ Y G L +DG+MN+A+ T E+ N
Sbjct: 2 ATVTDSADSVSSQFLGHIIGKPVHVKLHSGMLYSGTLESIDGFMNVALSSTTEHYENKEN 61
Query: 61 GQLKNKYGDAFIRGNNVLYIS 81
G L D F+RG VLYIS
Sbjct: 62 GLLHRYQSDVFLRGTQVLYIS 82
>gi|301781869|ref|XP_002926350.1| PREDICTED: hypothetical protein LOC100471390 [Ailuropoda
melanoleuca]
Length = 167
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+P+ V+ G++Y+G L +DGYMN+ + EEY++G L + IR
Sbjct: 88 PKPFLNGLTGKPITVEPKWGMEYKGYLVSVDGYMNMQLANIEEYIDGALSGHLAEVLIRH 147
Query: 75 NNVLYI 80
NN LYI
Sbjct: 148 NNALYI 153
>gi|390601284|gb|EIN10678.1| small nuclear ribonucleo protein SmF, partial [Punctularia
strigosozonata HHB-11173 SS5]
Length = 80
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 43/72 (59%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S T P F++ + G+ V V+L G++Y+G L DGYMN+ + TEE +G G
Sbjct: 3 SVTPVNPKPFMQELTGKLVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEIQDGVSNGTLG 62
Query: 69 DAFIRGNNVLYI 80
+ FIR NNVLYI
Sbjct: 63 EVFIRCNNVLYI 74
>gi|189028862|sp|Q6FYB6.2|LSM6_CANGA RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 79
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV---NGQLKNK 66
A FL +I G+PV VKL SG+ Y G+L +DG+MN+A+ +T E+ N L K
Sbjct: 2 AEESVSTQFLSNIIGKPVHVKLYSGMLYSGVLESIDGFMNVALSETREHYEHPNNNLLKK 61
Query: 67 YG-DAFIRGNNVLYIS 81
Y D F+RG V+YIS
Sbjct: 62 YASDVFLRGTQVMYIS 77
>gi|255710425|ref|XP_002551496.1| KLTH0A00770p [Lachancea thermotolerans]
gi|238932873|emb|CAR21054.1| KLTH0A00770p [Lachancea thermotolerans CBS 6340]
Length = 93
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL+ + +P+VV L + Y+G+L D Y N+ + + EE++ GQ K K GD FIR
Sbjct: 9 PKPFLRELINKPIVVTLKFNKTQYKGLLVSTDNYFNLQLTEAEEFIEGQSKGKIGDIFIR 68
Query: 74 GNNVLYI 80
NNVL+I
Sbjct: 69 CNNVLWI 75
>gi|388851890|emb|CCF54484.1| probable Small nuclear ribonucleoprotein F [Ustilago hordei]
Length = 82
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL+ G+PV+V+L G++Y+G L D YMN+ + TEE G+ G+ FIR
Sbjct: 9 PKPFLQLQTGKPVLVRLKWGMEYKGFLVSTDSYMNLQLANTEELQEGKSNGMLGEVFIRC 68
Query: 75 NNVLYISTSKRTLAD 89
NNVLY+ R L D
Sbjct: 69 NNVLYL----RELPD 79
>gi|50543240|ref|XP_499786.1| YALI0A05423p [Yarrowia lipolytica]
gi|49645651|emb|CAG83711.1| YALI0A05423p [Yarrowia lipolytica CLIB122]
Length = 103
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL+ + G+ V+V L G +Y+G L +D YMN+ +E EYV+ + K + GD FIR
Sbjct: 10 PKPFLQELTGKSVIVHLKWGKTEYQGTLVSVDSYMNLQLEDAVEYVDQENKGELGDVFIR 69
Query: 74 GNNVLYI 80
NNVL+I
Sbjct: 70 CNNVLWI 76
>gi|399216718|emb|CCF73405.1| unnamed protein product [Babesia microti strain RI]
Length = 92
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 41/66 (62%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL S+ G+ V VKL G++YRG L D YMNI ++ EE+++G K G IR
Sbjct: 23 PKPFLTSLLGKNVNVKLKWGMEYRGQLKSFDTYMNIQLDSAEEWIDGDFKGVLGLILIRC 82
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 83 NNVLYI 88
>gi|405120174|gb|AFR94945.1| small nuclear riboprotein F [Cryptococcus neoformans var. grubii
H99]
Length = 84
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 41/66 (62%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL+ + G+ V V+L G++YRG L DGYMN+ + TEE NG+ G+ IR
Sbjct: 9 PKPFLQDLTGKVVYVRLKWGLEYRGYLVSTDGYMNLQLANTEEIENGKSNGALGEVLIRC 68
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 69 NNVLYI 74
>gi|58266046|ref|XP_570179.1| mRNA processing-related protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134110882|ref|XP_775905.1| hypothetical protein CNBD3130 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258571|gb|EAL21258.1| hypothetical protein CNBD3130 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226412|gb|AAW42872.1| mRNA processing-related protein, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 87
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 42/70 (60%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL+ + G+ V V+L G++YRG L DGYMN+ + TEE NG+ G+ IR
Sbjct: 9 PKPFLQDLTGKVVYVRLKWGLEYRGYLVSTDGYMNLQLANTEEIENGKSNGALGEVLIRC 68
Query: 75 NNVLYISTSK 84
NNVLYI K
Sbjct: 69 NNVLYIREFK 78
>gi|281341398|gb|EFB16982.1| hypothetical protein PANDA_015984 [Ailuropoda melanoleuca]
Length = 86
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+P+ V+ G++Y+G L +DGYMN+ + EEY++G L + IR
Sbjct: 7 PKPFLNGLTGKPITVEPKWGMEYKGYLVSVDGYMNMQLANIEEYIDGALSGHLAEVLIRH 66
Query: 75 NNVLYISTSK 84
NN LYI K
Sbjct: 67 NNALYIRGVK 76
>gi|340502115|gb|EGR28832.1| lsm6 protein, putative [Ichthyophthirius multifiliis]
Length = 57
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 38/50 (76%)
Query: 24 GRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
GR V VKL++G +Y G+LA DG MN+ ++Q EE+ N +LKNKYG+ FIR
Sbjct: 2 GRLVSVKLHNGSEYVGVLATFDGLMNVVLQQAEEFENSELKNKYGEIFIR 51
>gi|367001911|ref|XP_003685690.1| hypothetical protein TPHA_0E01630 [Tetrapisispora phaffii CBS
4417]
gi|357523989|emb|CCE63256.1| hypothetical protein TPHA_0E01630 [Tetrapisispora phaffii CBS
4417]
Length = 81
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEY----VNGQLK 64
+ T + FL +I G+PV VKL SG+ Y G L +DG+MNIA+ T E+ NG L+
Sbjct: 3 AETNSVSSQFLSNIIGKPVNVKLYSGMLYNGKLESIDGFMNIALSNTTEHYENNANGMLR 62
Query: 65 NKYGDAFIRGNNVLYIS 81
D F+RG V+YIS
Sbjct: 63 RYENDVFLRGTQVMYIS 79
>gi|50288725|ref|XP_446792.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526100|emb|CAG59719.1| unnamed protein product [Candida glabrata]
Length = 86
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 11 TTKTPADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
T P FLK + +P+VV L + YRG+L D Y N+ + +EYV G+LK G+
Sbjct: 5 TPINPKPFLKDLVDKPIVVTLKFNKTQYRGVLVSTDNYFNLQLRDAQEYVAGELKGTLGE 64
Query: 70 AFIRGNNVLYI 80
FIR NNVLYI
Sbjct: 65 LFIRCNNVLYI 75
>gi|388580904|gb|EIM21216.1| small nuclear ribonucleo protein SmF [Wallemia sebi CBS 633.66]
Length = 90
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S P FL + G+ V V+L G+DY+G L +D YMN+ + TEE+ N + G
Sbjct: 2 SVQPVNPRPFLNDLTGKAVQVRLKWGLDYKGYLVSVDNYMNLQLANTEEFQNDKSNGALG 61
Query: 69 DAFIRGNNVLYISTS 83
+ FIR NNVL++ S
Sbjct: 62 EVFIRCNNVLWLKQS 76
>gi|50308123|ref|XP_454062.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74636738|sp|Q6CPS7.1|LSM6_KLULA RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|49643197|emb|CAG99149.1| KLLA0E02575p [Kluyveromyces lactis]
Length = 80
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 17 DFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV----NGQLKNKYGDAFI 72
FL++I G+PV VKL SG+ Y+G L +DG+MN+ M Q E+ NG L + F+
Sbjct: 10 SFLENIIGKPVYVKLFSGILYQGKLESIDGFMNVTMSQVSEHYEAEENGTLHKYPSEVFL 69
Query: 73 RGNNVLYIS 81
RG+ VLYIS
Sbjct: 70 RGSQVLYIS 78
>gi|66815943|ref|XP_641988.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74856500|sp|Q54XP2.1|RUXF_DICDI RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F;
AltName: Full=Sm protein F; Short=Sm-F; Short=SmF
gi|60470031|gb|EAL68012.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 91
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 14 TPADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
P FL ++G+ + V+L G++YRGILA +D YMN+ + TEE+++G K G+ I
Sbjct: 8 APKPFLYDLKGKKIAVRLKWGGMEYRGILASVDSYMNLQLAATEEWIDGANKGPLGEVLI 67
Query: 73 RGNNVLYI 80
R NNVL++
Sbjct: 68 RCNNVLFV 75
>gi|363752525|ref|XP_003646479.1| hypothetical protein Ecym_4639 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890114|gb|AET39662.1| hypothetical protein Ecym_4639 [Eremothecium cymbalariae
DBVPG#7215]
Length = 85
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 6/85 (7%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV- 59
MST + +AT+ A FL +I G+PV VKL+SG+ Y+G L +DG+MN+++ EY
Sbjct: 1 MSTTVQDTTATSS--ATFLSNIIGKPVNVKLHSGMLYQGTLESIDGFMNVSLAGAMEYYE 58
Query: 60 --NGQLKNKY-GDAFIRGNNVLYIS 81
+ + +KY D F+RG VLYIS
Sbjct: 59 VESSSVIHKYESDVFLRGTQVLYIS 83
>gi|384493309|gb|EIE83800.1| small nuclear ribonucleoprotein F [Rhizopus delemar RA 99-880]
Length = 88
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 40/66 (60%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV VKL G +Y+G L +D YMN+ + TEE+ NG G+ IR
Sbjct: 8 PKPFLNDLTGKPVSVKLKWGGEYQGYLVSVDNYMNLQLANTEEFQNGVSVGTLGEVLIRC 67
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 68 NNVLYI 73
>gi|395746943|ref|XP_003778537.1| PREDICTED: LOW QUALITY PROTEIN: small nuclear ribonucleoprotein
F-like [Pongo abelii]
Length = 122
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 39/63 (61%)
Query: 18 FLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNV 77
FLK + +PV+VKL G+DY+G L +DGYMN+ + TEEY+ IR NNV
Sbjct: 31 FLKGLTEKPVMVKLKWGMDYKGXLVSVDGYMNMXLANTEEYIAXATMPSVDKVLIRYNNV 90
Query: 78 LYI 80
LYI
Sbjct: 91 LYI 93
>gi|256052184|ref|XP_002569656.1| small nuclear ribonucleoprotein f (snrnp-f) [Schistosoma mansoni]
gi|353230903|emb|CCD77320.1| putative small nuclear ribonucleoprotein f (snrnp-f) [Schistosoma
mansoni]
Length = 84
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 41/66 (62%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL I G+ V+VKL G++Y+G L +D YMN+ + T+EY++ G+ IR
Sbjct: 8 PKPFLSGITGKQVIVKLKWGMEYKGYLVSVDRYMNLQLHSTDEYIDNCHTGSLGEVLIRC 67
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 68 NNVLYI 73
>gi|365990688|ref|XP_003672173.1| hypothetical protein NDAI_0J00380 [Naumovozyma dairenensis CBS
421]
gi|343770948|emb|CCD26930.1| hypothetical protein NDAI_0J00380 [Naumovozyma dairenensis CBS
421]
Length = 102
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 11 TTKTPADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
T P +L+ + +P+VV L + Y+G L D Y NI + EE VNG+ K K GD
Sbjct: 5 TPINPKPYLRELAQKPIVVTLKFNKTQYKGTLVSTDNYFNIQLSDAEEVVNGESKGKIGD 64
Query: 70 AFIRGNNVLYI 80
FIR NNVLYI
Sbjct: 65 IFIRCNNVLYI 75
>gi|60691036|gb|AAX30542.1| SJCHGC04779 protein [Schistosoma japonicum]
gi|226487226|emb|CAX75478.1| Small nuclear ribonucleoprotein F [Schistosoma japonicum]
gi|226487228|emb|CAX75479.1| Small nuclear ribonucleoprotein F [Schistosoma japonicum]
gi|226487230|emb|CAX75480.1| Small nuclear ribonucleoprotein F [Schistosoma japonicum]
gi|226487232|emb|CAX75481.1| Small nuclear ribonucleoprotein F [Schistosoma japonicum]
gi|226487234|emb|CAX75482.1| Small nuclear ribonucleoprotein F [Schistosoma japonicum]
Length = 84
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 41/66 (62%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL I G+ V+VKL G++Y+G L +D YMN+ + T+EY++ G+ IR
Sbjct: 8 PKPFLSGITGKQVIVKLKWGMEYKGYLVSVDRYMNLQLHSTDEYIDNCHTGSLGEVLIRC 67
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 68 NNVLYI 73
>gi|407044953|gb|EKE42919.1| LSM domain containing protein [Entamoeba nuttalli P19]
Length = 74
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
++TT P F K +KLN G ++G + +DG MNI +E EY+NG N+Y
Sbjct: 3 NSTTSPPIQFFKEALFHECSIKLNDGTIFKGKMTLIDGLMNIVLENAIEYINGNKDNEYP 62
Query: 69 DAFIRGNNVL 78
+ FIRGNN L
Sbjct: 63 ECFIRGNNSL 72
>gi|145517276|ref|XP_001444521.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145518840|ref|XP_001445292.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124411943|emb|CAK77124.1| unnamed protein product [Paramecium tetraurelia]
gi|124412736|emb|CAK77895.1| unnamed protein product [Paramecium tetraurelia]
Length = 81
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL+ I + ++V+L G + RG+L D YMN+ M TEEYV+G+ + G+ +R
Sbjct: 9 PRPFLEEITRKQIIVRLKWGWELRGVLKSSDQYMNLHMLNTEEYVDGKSRGILGEVLVRC 68
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 69 NNVLYI 74
>gi|320589552|gb|EFX02013.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 119
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P L+ + G+PV V+L G +Y+G L +D YMN+ + TEE+++G+ + G IR
Sbjct: 42 PRPMLQDLVGKPVSVRLKWGETEYKGALVSIDSYMNLQLSDTEEFIDGESTGQLGQVLIR 101
Query: 74 GNNVLYISTSKR 85
NNVL+I +R
Sbjct: 102 CNNVLWIRGDER 113
>gi|67476154|ref|XP_653680.1| small nuclear ribonucleoprotein F [Entamoeba histolytica
HM-1:IMSS]
gi|56470655|gb|EAL48292.1| small nuclear ribonucleoprotein F, putative [Entamoeba
histolytica HM-1:IMSS]
gi|407038538|gb|EKE39178.1| LSM domain containing protein [Entamoeba nuttalli P19]
Length = 83
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 18 FLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNV 77
FL + G+ V +KL G++Y+G+L D YMN + EE+ NG + K GD IR NNV
Sbjct: 13 FLNDLIGKLVSIKLKWGMEYKGMLVSRDAYMNFLLTNAEEWTNGVMAGKVGDVLIRCNNV 72
Query: 78 LYISTSKRTLAD 89
LY+ R L+D
Sbjct: 73 LYV----RDLSD 80
>gi|167377724|ref|XP_001734515.1| small nuclear ribonucleoprotein F [Entamoeba dispar SAW760]
gi|165903946|gb|EDR29326.1| small nuclear ribonucleoprotein F, putative [Entamoeba dispar
SAW760]
Length = 83
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 18 FLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNV 77
FL + G+ V +KL G++Y+G+L D YMN + EE+ NG + K GD IR NNV
Sbjct: 13 FLNDLIGKLVSIKLKWGMEYKGVLVSRDAYMNFLLTNAEEWTNGVIAGKVGDVLIRCNNV 72
Query: 78 LYI 80
LY+
Sbjct: 73 LYV 75
>gi|449710107|gb|EMD49242.1| small nuclear ribonucleoprotein F, putative [Entamoeba
histolytica KU27]
Length = 83
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 18 FLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNV 77
FL + G+ V +KL G++Y+G+L D YMN + EE+ NG + K GD IR NNV
Sbjct: 13 FLNDLIGKFVSIKLKWGMEYKGMLVSRDAYMNFLLTNAEEWTNGVMAGKVGDVLIRCNNV 72
Query: 78 LYISTSKRTLAD 89
LY+ R L+D
Sbjct: 73 LYV----RDLSD 80
>gi|307354786|ref|YP_003895837.1| small nuclear riboprotein-like protein [Methanoplanus
petrolearius DSM 11571]
gi|307158019|gb|ADN37399.1| Like-Sm ribonucleoprotein core [Methanoplanus petrolearius DSM
11571]
Length = 75
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 12 TKTPADFL-KSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
TK P + L +++ +PV+V L G + RGIL D +MN+ +E EE +NG +KN+ G
Sbjct: 2 TKRPLEILDQALNQKPVIVSLKGGREIRGILQGYDVHMNLVLENAEEEINGVIKNQ-GTL 60
Query: 71 FIRGNNVLYISTS 83
+RG+NV+YIS S
Sbjct: 61 IVRGDNVIYISPS 73
>gi|366988705|ref|XP_003674120.1| hypothetical protein NCAS_0A11810 [Naumovozyma castellii CBS
4309]
gi|342299983|emb|CCC67739.1| hypothetical protein NCAS_0A11810 [Naumovozyma castellii CBS
4309]
Length = 83
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM----EQTE 56
MS E S +T+ FL +I G+PV VKL SG+ Y G L +DG+MN+A+ E E
Sbjct: 1 MSAKTESTSVSTQ----FLSNIIGKPVNVKLYSGMLYNGRLESIDGFMNVALSSATEHYE 56
Query: 57 EYVNGQLKNKYGDAFIRGNNVLYIS 81
NG L+ D F+RG V+YIS
Sbjct: 57 NASNGLLRTYNSDVFLRGTQVMYIS 81
>gi|45185890|ref|NP_983606.1| ACR204Cp [Ashbya gossypii ATCC 10895]
gi|74694815|sp|Q75BR7.1|LSM6_ASHGO RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|44981680|gb|AAS51430.1| ACR204Cp [Ashbya gossypii ATCC 10895]
gi|374106813|gb|AEY95722.1| FACR204Cp [Ashbya gossypii FDAG1]
Length = 85
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 5/79 (6%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQ---L 63
+G A T + + FL +I G+PV VKL+SG+ Y+G L +DG+MN+A+ EY + +
Sbjct: 6 QGPAVTSS-STFLSNIIGKPVNVKLHSGMLYQGTLESIDGFMNVALVDASEYYESEQNPV 64
Query: 64 KNKY-GDAFIRGNNVLYIS 81
++Y D F+RG V+YIS
Sbjct: 65 IHRYESDVFLRGTQVMYIS 83
>gi|399949557|gb|AFP65215.1| small nuclear ribonucleoprotein F [Chroomonas mesostigmatica
CCMP1168]
gi|399949710|gb|AFP65368.1| small nuclear ribonucleoprotein F [Chroomonas mesostigmatica
CCMP1168]
gi|399949722|gb|AFP65379.1| small nuclear ribonucleoprotein F [Chroomonas mesostigmatica
CCMP1168]
gi|399949883|gb|AFP65540.1| small nuclear ribonucleoprotein F [Chroomonas mesostigmatica
CCMP1168]
gi|399949895|gb|AFP65551.1| small nuclear ribonucleoprotein F [Chroomonas mesostigmatica
CCMP1168]
gi|399950053|gb|AFP65709.1| small nuclear ribonucleoprotein F [Chroomonas mesostigmatica
CCMP1168]
Length = 99
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FLK+ + + ++VKL G++YRGIL D YMNI M+ EE++ + + IR
Sbjct: 12 PKFFLKTRQDKMILVKLKWGMEYRGILQSFDAYMNIRMKNAEEWIYNEKAGFLEEVLIRC 71
Query: 75 NNVLYISTS 83
NN+LYI+
Sbjct: 72 NNILYIANH 80
>gi|225680065|gb|EEH18349.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 136
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL+S+ ++V+L G +Y+G L +D YMNI + TEE+++G+ G IR
Sbjct: 55 PRPFLQSLINEDIIVRLKWGHTEYKGQLVSVDSYMNIQLSNTEEFIDGKSTGSLGQVLIR 114
Query: 74 GNNVLYISTSK 84
NNVL+IS +K
Sbjct: 115 CNNVLWISAAK 125
>gi|384496589|gb|EIE87080.1| small nuclear ribonucleoprotein F [Rhizopus delemar RA 99-880]
Length = 85
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S P FL + G+PV VKL G +Y+G L +D YMN+ + TEE+ +G G
Sbjct: 2 SFVPVNPKPFLNDLTGKPVSVKLKWGGEYQGYLVSVDNYMNLQLANTEEFQDGVSVGTLG 61
Query: 69 DAFIRGNNVLYI 80
+ IR NNVLYI
Sbjct: 62 EVLIRCNNVLYI 73
>gi|254570317|ref|XP_002492268.1| hypothetical protein [Komagataella pastoris GS115]
gi|238032066|emb|CAY69988.1| Hypothetical protein PAS_chr3_0060 [Komagataella pastoris GS115]
Length = 86
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P++FL I G VVVK+ G + G L +DG+MN+A+E T G+ YGD FIRG
Sbjct: 8 PSEFLSRITGEKVVVKMRDGTECHGALQSIDGFMNVALENTVGKYKGETTKTYGDVFIRG 67
Query: 75 NN 76
N
Sbjct: 68 TN 69
>gi|432329499|ref|YP_007247642.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
gi|432136208|gb|AGB01135.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
Length = 75
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 12 TKTPADFLKSIRGR-PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
TK P D L + R PV+V L G + RG+L D +MN+ +++ EE NGQ++ K G
Sbjct: 2 TKRPLDILDQVLNRQPVIVSLKGGREIRGVLQGYDVHMNLVLDKAEEVENGQVQ-KVGTL 60
Query: 71 FIRGNNVLYISTS 83
+RG+NV+YIS S
Sbjct: 61 IVRGDNVIYISPS 73
>gi|442754581|gb|JAA69450.1| Putative small nuclear ribonucleoprotein snrnp smf [Ixodes
ricinus]
Length = 86
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKY-GDAFIR 73
P FL + G+ V+VKL G++Y+GIL D YMNI ++ EE+ G LK K G IR
Sbjct: 12 PKPFLTMLTGQLVIVKLKWGMEYKGILKSFDSYMNIQIDGAEEWERGVLKGKLDGTILIR 71
Query: 74 GNNVLYI 80
NN+LYI
Sbjct: 72 CNNMLYI 78
>gi|284162105|ref|YP_003400728.1| Sm ribonucleoprotein-like protein [Archaeoglobus profundus DSM
5631]
gi|284012102|gb|ADB58055.1| Like-Sm ribonucleoprotein core [Archaeoglobus profundus DSM 5631]
Length = 74
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P D L PV+V+L G ++RGIL D +MNI +E EE NG++ K G I
Sbjct: 3 KRPLDVLNKALQTPVLVRLKGGREFRGILNGYDIHMNIVLENAEEIQNGEVVRKLGSVVI 62
Query: 73 RGNNVLYISTSK 84
RG+ V+++S S+
Sbjct: 63 RGDTVVFVSPSE 74
>gi|19112893|ref|NP_596101.1| Sm snRNP core protein Smf1 [Schizosaccharomyces pombe 972h-]
gi|6094210|sp|O59734.1|RUXF_SCHPO RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F;
AltName: Full=Sm protein F; Short=Sm-F; Short=SmF
gi|3130040|emb|CAA19017.1| Sm snRNP core protein Smf1 [Schizosaccharomyces pombe]
Length = 78
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S P FL+ + G+PV+V+L G +Y+G L +D YMN+ + EE V+G G
Sbjct: 2 SFVPVNPKPFLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLG 61
Query: 69 DAFIRGNNVLYISTS 83
+ IR NNVL++ S
Sbjct: 62 EILIRCNNVLWVGES 76
>gi|238231689|ref|NP_001154030.1| Small nuclear ribonucleoprotein F [Oncorhynchus mykiss]
gi|225703496|gb|ACO07594.1| Small nuclear ribonucleoprotein F [Oncorhynchus mykiss]
Length = 65
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL + G+PV+VKL G++Y+G L +D YMN+ + +EEYV+G L + G+ +R
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDSYMNMQLANSEEYVDGALADHLGEVLVR 65
>gi|326431600|gb|EGD77170.1| snRNP Sm protein F [Salpingoeca sp. ATCC 50818]
Length = 70
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S T K P L+ + G+ V VKL G++YRG+L D YMN + TEEY++G + G
Sbjct: 2 SLTIKNPKQLLQELTGKSVAVKLKWGMEYRGVLKSFDNYMNFQLLNTEEYIDGVSQGNLG 61
Query: 69 DAFIRGN 75
+ IR +
Sbjct: 62 ECLIRAH 68
>gi|412991017|emb|CCO18389.1| predicted protein [Bathycoccus prasinos]
Length = 92
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 15 PADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL+S+ G+ V+VKL SG+ Y+G L D YMN+ + T E ++G+ G+ IR
Sbjct: 10 PKPFLQSLTGKKVLVKLKWSGMAYKGFLVSTDAYMNVQLANTMEIIDGEETGNLGEVLIR 69
Query: 74 GNNVLYIS 81
NNVL+IS
Sbjct: 70 CNNVLWIS 77
>gi|148688807|gb|EDL20754.1| mCG1048415 [Mus musculus]
Length = 83
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P L + G+PV+VKL G++Y L +DGYMN+ + TEEY++G+L G+ R
Sbjct: 7 PKTSLNGLTGKPVMVKLKWGMEY---LVSMDGYMNMQLANTEEYIDGELSEHLGEVLKRC 63
Query: 75 NNVLY 79
NNVLY
Sbjct: 64 NNVLY 68
>gi|254585029|ref|XP_002498082.1| ZYRO0G01804p [Zygosaccharomyces rouxii]
gi|238940976|emb|CAR29149.1| ZYRO0G01804p [Zygosaccharomyces rouxii]
Length = 115
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 16 ADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV----NGQLKNKYGDAF 71
+ FL +I G+ V VKL+SG+ YRG L +DG+MN+A+ +E+ NG L+ D F
Sbjct: 43 SQFLSTIIGQNVHVKLHSGMLYRGRLESIDGFMNVALSSAKEHYETGENGLLRTYPTDVF 102
Query: 72 IRGNNVLYISTSK 84
+RG V+YIS K
Sbjct: 103 LRGTQVMYISEVK 115
>gi|444316380|ref|XP_004178847.1| hypothetical protein TBLA_0B04935 [Tetrapisispora blattae CBS
6284]
gi|387511887|emb|CCH59328.1| hypothetical protein TBLA_0B04935 [Tetrapisispora blattae CBS
6284]
Length = 104
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P +L+S+ P++V L + Y+GIL D Y NI + TEE V+G+ + GD FIR
Sbjct: 19 PKPYLRSLIDTPIIVTLKFNKTQYKGILVSTDNYFNIQLRNTEEIVDGKTTGQLGDIFIR 78
Query: 74 GNNVLYI 80
NNVL+I
Sbjct: 79 CNNVLWI 85
>gi|254569300|ref|XP_002491760.1| Core Sm protein Sm F [Komagataella pastoris GS115]
gi|238031557|emb|CAY69480.1| Core Sm protein Sm F [Komagataella pastoris GS115]
Length = 90
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 4/75 (5%)
Query: 15 PADFLKSIRGRPVVVKL-NSGVDYRGILACLDGYMNIAME-QTEEY--VNGQLKNKYGDA 70
P FLKS+ R V+VKL +S V+Y G L +D YMN++++ T+E+ + +L D
Sbjct: 8 PKPFLKSLINRSVIVKLKSSNVEYHGFLLSVDNYMNLSLDSSTKEFDPITEELTPLGSDL 67
Query: 71 FIRGNNVLYISTSKR 85
FIR NNVL+IST++
Sbjct: 68 FIRCNNVLWISTTEE 82
>gi|440633409|gb|ELR03328.1| small nuclear ribonucleoprotein F [Geomyces destructans 20631-21]
Length = 91
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKY 67
S P L+S+ VVV+L G +Y+GIL +D YMNI + TEE+++ +L
Sbjct: 2 SVMPVNPRPMLQSLVNEEVVVRLKWGQTEYKGILVSIDSYMNIQLTNTEEFIDQKLTAAL 61
Query: 68 GDAFIRGNNVLYISTS 83
G IR NNVL+I +
Sbjct: 62 GQVLIRCNNVLWIQAA 77
>gi|429328455|gb|AFZ80215.1| small nuclear ribonucleoprotein f, putative [Babesia equi]
Length = 80
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKY-GDAFIR 73
P FL ++ G+ V+VKL G++YRGIL D YMN+ ++ EE+ NG LK K G+ IR
Sbjct: 16 PKPFLTNLAGKTVIVKLKWGMEYRGILKSFDSYMNLQLDSAEEWQNGTLKGKLGGEVLIR 75
>gi|367017208|ref|XP_003683102.1| hypothetical protein TDEL_0H00320 [Torulaspora delbrueckii]
gi|359750766|emb|CCE93891.1| hypothetical protein TDEL_0H00320 [Torulaspora delbrueckii]
Length = 83
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKY 67
S T P FL+ + +PVVV L + YRG L D Y N+ + EE+V+G+ +
Sbjct: 2 SFTPVNPKPFLRELVDQPVVVTLKFNSTQYRGTLVSTDNYFNVRLRDAEEFVDGRSRGTV 61
Query: 68 GDAFIRGNNVLYISTSKRTLAD 89
G+ F+R NNVL+I + A+
Sbjct: 62 GEIFVRCNNVLWIGQPQPEAAE 83
>gi|156086192|ref|XP_001610505.1| small nuclear ribonucleoprotein F [Babesia bovis T2Bo]
gi|154797758|gb|EDO06937.1| small nuclear ribonucleoprotein F, putative [Babesia bovis]
Length = 94
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK 66
+ + T P FL + G+ V V L G++Y+G L D YMNI +E EE+ NG +K
Sbjct: 16 QQAVTPLNPKPFLAKLVGQNVFVTLKWGMEYKGFLKSFDSYMNIELENAEEWENGVMKGT 75
Query: 67 Y-GDAFIRGNNVLYISTSK 84
G IR NNVL+I ++
Sbjct: 76 LGGTILIRCNNVLHIRAAE 94
>gi|374629344|ref|ZP_09701729.1| Small nuclear ribonucleoprotein, LSM family [Methanoplanus
limicola DSM 2279]
gi|373907457|gb|EHQ35561.1| Small nuclear ribonucleoprotein, LSM family [Methanoplanus
limicola DSM 2279]
Length = 75
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 12 TKTPADFL-KSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
TK P + L K++ +PV+V L G + RG+L D +MN+ +E EE +NG + K G
Sbjct: 2 TKRPLEILDKALNQKPVIVSLKGGREIRGVLQGYDVHMNLVLENAEEEING-VTTKAGTL 60
Query: 71 FIRGNNVLYISTS 83
+RG+NV+YIS S
Sbjct: 61 IVRGDNVIYISPS 73
>gi|315045822|ref|XP_003172286.1| hypothetical protein MGYG_04873 [Arthroderma gypseum CBS 118893]
gi|311342672|gb|EFR01875.1| hypothetical protein MGYG_04873 [Arthroderma gypseum CBS 118893]
Length = 90
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P L+S+ +VV+L G +Y+G L +D YMNI + QTEE+++G+ G+ IR
Sbjct: 8 PRPMLQSLINEDIVVRLKWGQTEYKGRLVSVDSYMNIQLSQTEEFIDGKNTGTLGEVLIR 67
Query: 74 GNNVLYISTSK 84
NNVL+I +K
Sbjct: 68 CNNVLWIGNAK 78
>gi|261193311|ref|XP_002623061.1| small nuclear ribonucleoprotein SmF [Ajellomyces dermatitidis
SLH14081]
gi|239588666|gb|EEQ71309.1| small nuclear ribonucleoprotein SmF [Ajellomyces dermatitidis
SLH14081]
gi|327358008|gb|EGE86865.1| small nuclear ribonucleoprotein SmF [Ajellomyces dermatitidis
ATCC 18188]
Length = 90
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P L+S+ ++V+L G +Y+G L +D YMNI + TEE+++G+ G IR
Sbjct: 8 PRPMLQSLVNEDIIVRLKWGQTEYKGQLVSVDSYMNIQLSNTEEFIDGKSTGSLGQVLIR 67
Query: 74 GNNVLYISTSK 84
NNVL+IS +K
Sbjct: 68 CNNVLWISAAK 78
>gi|328850359|gb|EGF99525.1| hypothetical protein MELLADRAFT_57836 [Melampsora larici-populina
98AG31]
Length = 58
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 28 VVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL 87
+V+L G++Y+G L +D YMN+ + TEEY NGQ G+ FIR NNVLYI R L
Sbjct: 1 MVRLKWGMEYKGYLVSMDSYMNLQLANTEEYQNGQSVGSLGEVFIRCNNVLYI----RAL 56
Query: 88 AD 89
+D
Sbjct: 57 SD 58
>gi|119617955|gb|EAW97549.1| small nuclear ribonucleoprotein polypeptide F, isoform CRA_b
[Homo sapiens]
gi|344252281|gb|EGW08385.1| Small nuclear ribonucleoprotein F [Cricetulus griseus]
Length = 67
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 37/53 (69%)
Query: 28 VVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 80
+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR NNVLYI
Sbjct: 1 MVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYI 53
>gi|409050244|gb|EKM59721.1| hypothetical protein PHACADRAFT_205939 [Phanerochaete carnosa
HHB-10118-sp]
Length = 69
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P F++ + G+PV V+L G++Y+G L DGYMN+ + TEE+ +G+ G+ FIR
Sbjct: 9 PKPFMQELTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGALGEVFIR 67
>gi|119191758|ref|XP_001246485.1| hypothetical protein CIMG_00256 [Coccidioides immitis RS]
gi|320036371|gb|EFW18310.1| sm snRNP core protein Smf1 [Coccidioides posadasii str. Silveira]
gi|392864283|gb|EAS34890.2| small nuclear ribonucleoprotein SmF [Coccidioides immitis RS]
Length = 89
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P L+S+ V+V+L G +Y+G L +D YMNI + TEE+++G+ G IR
Sbjct: 8 PRPMLQSLVNEDVIVRLKWGQTEYKGQLVSVDSYMNIQLSNTEEFIDGKNTGTLGQVLIR 67
Query: 74 GNNVLYISTSK 84
NNVL+IS +K
Sbjct: 68 CNNVLWISAAK 78
>gi|330038475|ref|XP_003239607.1| small nuclear ribonucleoprotein E-like protein [Cryptomonas
paramecium]
gi|327206531|gb|AEA38709.1| small nuclear ribonucleoprotein E-like protein [Cryptomonas
paramecium]
Length = 88
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
TP +L S++ + + +KL GVDY+GIL +D Y+N+ + TEE+ N G+ FIR
Sbjct: 16 TPKIYLLSLKNKKIFIKLKWGVDYKGILMSVDRYLNLHLLNTEEWKNNLKIGYLGEIFIR 75
Query: 74 GNNVLYIS 81
NN+ +++
Sbjct: 76 CNNIQFLT 83
>gi|327304717|ref|XP_003237050.1| small nuclear ribonucleoprotein F [Trichophyton rubrum CBS
118892]
gi|326460048|gb|EGD85501.1| small nuclear ribonucleoprotein F [Trichophyton rubrum CBS
118892]
gi|326477298|gb|EGE01308.1| LSM domain-containing protein [Trichophyton equinum CBS 127.97]
Length = 90
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P L+S+ +VV+L G +Y+G L +D YMNI + QTEE+++G+ G+ IR
Sbjct: 8 PRPMLQSLINEDIVVRLKWGQTEYKGRLISVDSYMNIQLSQTEEFIDGKNTGTLGEVLIR 67
Query: 74 GNNVLYISTSK 84
NNVL+I +K
Sbjct: 68 CNNVLWIGNAK 78
>gi|154149642|ref|YP_001403260.1| like-Sm ribonucleoprotein, core [Methanoregula boonei 6A8]
gi|153998194|gb|ABS54617.1| Like-Sm ribonucleoprotein, core [Methanoregula boonei 6A8]
Length = 76
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 12 TKTPADFLKSIRGR-PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
TK P D L + R PV+V L G + RG+L D +MN+ +++ EE NGQ+ K G
Sbjct: 2 TKRPLDILDLVLNRQPVIVSLKGGREIRGVLQGYDVHMNLVLDKAEETENGQVV-KVGTL 60
Query: 71 FIRGNNVLYISTS 83
+RG+NV+YIS S
Sbjct: 61 IVRGDNVIYISPS 73
>gi|260941980|ref|XP_002615156.1| hypothetical protein CLUG_05171 [Clavispora lusitaniae ATCC 42720]
gi|238851579|gb|EEQ41043.1| hypothetical protein CLUG_05171 [Clavispora lusitaniae ATCC 42720]
Length = 105
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 15 PADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYV---NGQLKNKYGDA 70
P FLK++ + V+V+L + +Y+G L +D YMN+ +++T E + NG+ + K G+
Sbjct: 25 PKPFLKTLLNKQVIVRLKWNKTEYKGTLLSIDNYMNLQLDETYEVIRDENGKREEKIGEI 84
Query: 71 FIRGNNVLYISTSKRTLADGA 91
FIR NNVL++ ++++ A
Sbjct: 85 FIRCNNVLFVREDPDSMSEEA 105
>gi|210075302|ref|XP_500899.2| YALI0B14773p [Yarrowia lipolytica]
gi|199425179|emb|CAG83150.2| YALI0B14773p [Yarrowia lipolytica CLIB122]
Length = 527
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKY-GDAFIR 73
P+ FL I G+ V V++++G + G+L +DGYM+I +E EE V+ ++ Y D FIR
Sbjct: 11 PSSFLGEISGKKVNVRVSTGTTFSGVLQSVDGYMSIVLENAEELVDDKVVGIYDDDVFIR 70
Query: 74 GNNVLYISTSKRT 86
GNN + +S T
Sbjct: 71 GNNERRLDSSPET 83
>gi|239614009|gb|EEQ90996.1| small nuclear ribonucleoprotein SmF [Ajellomyces dermatitidis
ER-3]
Length = 90
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P L+S+ ++V L G +Y+G L +D YMNI + TEE+++G+ G IR
Sbjct: 8 PRPMLQSLVNEDIIVHLKWGQTEYKGQLVSVDSYMNIQLSNTEEFIDGKSTGSLGQVLIR 67
Query: 74 GNNVLYISTSK 84
NNVL+IS +K
Sbjct: 68 CNNVLWISAAK 78
>gi|342878436|gb|EGU79779.1| hypothetical protein FOXB_09741 [Fusarium oxysporum Fo5176]
Length = 89
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P L+ + G PV+V+L G V+Y+G L +D YMNI + TEEY+ + G IR
Sbjct: 8 PRPMLEKLVGNPVLVRLKWGEVEYKGTLVSIDSYMNIQLSGTEEYIEDKPTGSLGQVLIR 67
Query: 74 GNNVLYI 80
NNVL++
Sbjct: 68 CNNVLWV 74
>gi|225558565|gb|EEH06849.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
gi|240275004|gb|EER38519.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
gi|325094349|gb|EGC47659.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 90
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P L+S+ V+V+L G +Y+G L +D YMNI + TEE++ G+ G IR
Sbjct: 8 PRPMLQSLVNEDVLVRLKWGHTEYKGQLVSVDSYMNIQLSNTEEFIEGKSTGSLGQVLIR 67
Query: 74 GNNVLYISTSK 84
NNVL+IS +K
Sbjct: 68 CNNVLWISAAK 78
>gi|154311929|ref|XP_001555293.1| predicted protein [Botryotinia fuckeliana B05.10]
gi|347839851|emb|CCD54423.1| similar to small nuclear ribonucleoprotein protein F [Botryotinia
fuckeliana]
Length = 91
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 15 PADFLKSIRGRPVVVKLNSG--VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
P FL+++ V+++L G +Y+G L +D YMNI + EE+++ ++ + G I
Sbjct: 8 PRPFLQNLVNEEVIIRLKWGGQTEYKGKLVSIDSYMNIQLSGAEEWIDSEMTSTLGQVLI 67
Query: 73 RGNNVLYISTSK 84
R NNVLYIS ++
Sbjct: 68 RCNNVLYISAAQ 79
>gi|213406521|ref|XP_002174032.1| small nuclear ribonucleoprotein F [Schizosaccharomyces japonicus
yFS275]
gi|212002079|gb|EEB07739.1| small nuclear ribonucleoprotein F [Schizosaccharomyces japonicus
yFS275]
Length = 66
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL+ + G+PV+++L G +Y+G L +D YMN+ + EE+++G+ + G+ FIR
Sbjct: 8 PKPFLQGLTGKPVLIRLKWGQEYKGTLQSIDSYMNLQLMDAEEWIDGESTGQLGEIFIR 66
>gi|226291857|gb|EEH47285.1| LSM domain-containing protein [Paracoccidioides brasiliensis
Pb18]
Length = 93
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 13 KTPADFL-KSIRGRP------VVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLK 64
K ADF+ K I +P ++V+L G +Y+G L +D YMNI + TEE+++G+
Sbjct: 3 KLTADFIGKHITVQPSRINEDIIVRLKWGHTEYKGQLVSVDSYMNIQLSNTEEFIDGKST 62
Query: 65 NKYGDAFIRGNNVLYISTSK 84
G IR NNVL+IS +K
Sbjct: 63 GSLGQVLIRCNNVLWISAAK 82
>gi|254580984|ref|XP_002496477.1| ZYRO0D00990p [Zygosaccharomyces rouxii]
gi|238939369|emb|CAR27544.1| ZYRO0D00990p [Zygosaccharomyces rouxii]
Length = 99
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 11 TTKTPADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
T P FL + +P+VV L + Y+G L D Y N+ + + EE V+G+ K K G+
Sbjct: 5 TPTNPKPFLGELVNKPIVVTLKFNKTQYKGTLISTDNYFNLQLSEAEEVVDGKNKGKVGN 64
Query: 70 AFIRGNNVLYI 80
FIR NNVL+I
Sbjct: 65 IFIRCNNVLWI 75
>gi|16082245|ref|NP_394696.1| small nuclear ribonucleoprotein [Thermoplasma acidophilum DSM
1728]
gi|11387090|sp|P57670.1|RUXX_THEAC RecName: Full=Putative snRNP Sm-like protein
gi|10640586|emb|CAC12364.1| small nuclear ribonucleoprotein related protein [Thermoplasma
acidophilum]
Length = 83
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK 66
K A K P D LKS R V++ + +Y GIL D YMNI ++ E +NG+ K
Sbjct: 3 KTPANVK-PMDVLKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEIINGENKGV 61
Query: 67 YGDAFIRGNNVLYISTSK 84
Y +RG+NV+++S SK
Sbjct: 62 YDRVLVRGDNVIFVSPSK 79
>gi|116204791|ref|XP_001228206.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88176407|gb|EAQ83875.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 90
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL+ + + VVV+L G +Y+G L +D YMNI + TEE+++ + G IR
Sbjct: 8 PRPFLQDLVNKDVVVRLKWGETEYKGRLVSIDSYMNIQLSNTEEFIDRKFTGALGQVLIR 67
Query: 74 GNNVLYISTS 83
NNVLY++ +
Sbjct: 68 CNNVLYVTAA 77
>gi|328772224|gb|EGF82263.1| hypothetical protein BATDEDRAFT_10083, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 65
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL + G+P++VKL G++Y+G L +D YMN+ + TEEY++G + G+ +R
Sbjct: 5 PKPFLNELTGKPIMVKLKWGMEYKGYLVSVDSYMNMQLANTEEYIDGVSQGVLGEVLVR 63
>gi|410075770|ref|XP_003955467.1| hypothetical protein KAFR_0B00320 [Kazachstania africana CBS
2517]
gi|372462050|emb|CCF56332.1| hypothetical protein KAFR_0B00320 [Kazachstania africana CBS
2517]
Length = 81
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL+ + + +VV L + YRG L D Y NI + + EE+V+ + K GD FIR
Sbjct: 9 PKPFLRDLVNKKIVVTLKFNNTKYRGTLVSTDNYFNIQLSEAEEFVSNKSKGTIGDIFIR 68
Query: 74 GNNVLYI 80
NNVLYI
Sbjct: 69 CNNVLYI 75
>gi|288560538|ref|YP_003424024.1| LSM domain-containing protein [Methanobrevibacter ruminantium M1]
gi|288543248|gb|ADC47132.1| LSM domain-containing protein [Methanobrevibacter ruminantium M1]
Length = 77
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 8 GSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKY 67
G + P D L PV++KL ++RGIL D +MN+ ++ EE G++ +
Sbjct: 3 GQQNVQRPLDALGKAVNSPVLIKLKGEREFRGILKSFDLHMNLVLDDAEELEKGEVLRRL 62
Query: 68 GDAFIRGNNVLYIS 81
G IRG+N++YIS
Sbjct: 63 GTVLIRGDNIVYIS 76
>gi|88604287|ref|YP_504465.1| like-Sm ribonucleoprotein, core [Methanospirillum hungatei JF-1]
gi|88189749|gb|ABD42746.1| Small nuclear ribonucleoprotein, LSM family [Methanospirillum
hungatei JF-1]
Length = 80
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 7 KGSATTKTPADFLKSIRGR-PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 65
+G TK P D L + R PV++ L G + +G+L D +MN+ +++ EE V GQ ++
Sbjct: 2 QGIDMTKRPMDILDQVLNRQPVLISLKGGREIKGVLQGYDVHMNLVLDKAEEIVQGQAQS 61
Query: 66 KYGDAFIRGNNVLYISTSKR 85
G IRG+NV+YIS + +
Sbjct: 62 -IGTLIIRGDNVIYISPNPQ 80
>gi|367005059|ref|XP_003687262.1| hypothetical protein TPHA_0I03270 [Tetrapisispora phaffii CBS
4417]
gi|357525565|emb|CCE64828.1| hypothetical protein TPHA_0I03270 [Tetrapisispora phaffii CBS
4417]
Length = 85
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 8 GSATTKTPADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK 66
S P FL+ + G+ +VVKL + +Y G L LD Y N+ ++ EE ++G K
Sbjct: 7 ASLQPVNPKPFLRDLIGKKIVVKLKFNKTEYIGTLKSLDNYFNLQLDAAEEVIDGVSKGT 66
Query: 67 YGDAFIRGNNVLYI 80
GD FIR NNVLY+
Sbjct: 67 IGDIFIRCNNVLYV 80
>gi|193657221|ref|XP_001948152.1| PREDICTED: small nuclear ribonucleoprotein F-like [Acyrthosiphon
pisum]
Length = 89
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P +L + G+ ++VKL G +Y+G L D YMNI + E+V G G+ IR
Sbjct: 8 PKPYLNGLMGKTIIVKLKWGHEYKGFLVSTDNYMNIQLASATEFVEGSEPALLGEIMIRC 67
Query: 75 NNVLYIST 82
NNVLYI +
Sbjct: 68 NNVLYIRS 75
>gi|209881570|ref|XP_002142223.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209557829|gb|EEA07874.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 92
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL + + V+V+L G ++Y+G L D YMN + EE+++G +K G FIR
Sbjct: 9 PKPFLTGLIEKTVIVRLKWGNIEYKGTLESYDDYMNFLLRDCEEWIDGTVKGALGTVFIR 68
Query: 74 GNNVLYI 80
NN+LYI
Sbjct: 69 CNNILYI 75
>gi|300122521|emb|CBK23091.2| unnamed protein product [Blastocystis hominis]
Length = 74
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 24 GRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 80
G+ + VKL G++Y+G L D YMN+ + EEYV+G+ GD IR NNVLYI
Sbjct: 3 GKLICVKLKWGLEYQGRLVSFDSYMNLQLSNCEEYVDGKSTALLGDVLIRCNNVLYI 59
>gi|29726339|pdb|1JBM|A Chain A, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726340|pdb|1JBM|B Chain B, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726341|pdb|1JBM|C Chain C, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726342|pdb|1JBM|D Chain D, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726343|pdb|1JBM|E Chain E, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726344|pdb|1JBM|F Chain F, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726345|pdb|1JBM|G Chain G, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
Length = 86
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
+ P D L + PV++KL ++RG+L D +MN+ + EE +G++ + G
Sbjct: 9 VNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGT 68
Query: 70 AFIRGNNVLYISTSK 84
IRG+N++YIS K
Sbjct: 69 VLIRGDNIVYISRGK 83
>gi|29726409|pdb|1LOJ|A Chain A, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726410|pdb|1LOJ|B Chain B, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726411|pdb|1LOJ|C Chain C, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726412|pdb|1LOJ|D Chain D, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726413|pdb|1LOJ|E Chain E, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726414|pdb|1LOJ|F Chain F, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726415|pdb|1LOJ|G Chain G, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726416|pdb|1LOJ|H Chain H, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726417|pdb|1LOJ|I Chain I, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726418|pdb|1LOJ|J Chain J, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726419|pdb|1LOJ|K Chain K, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726420|pdb|1LOJ|L Chain L, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726421|pdb|1LOJ|M Chain M, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726422|pdb|1LOJ|N Chain N, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
Length = 87
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
+ P D L + PV++KL ++RG+L D +MN+ + EE +G++ + G
Sbjct: 9 VNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGT 68
Query: 70 AFIRGNNVLYISTSK 84
IRG+N++YIS K
Sbjct: 69 VLIRGDNIVYISRGK 83
>gi|358386686|gb|EHK24281.1| hypothetical protein TRIVIDRAFT_30418 [Trichoderma virens Gv29-8]
gi|358399880|gb|EHK49217.1| hypothetical protein TRIATDRAFT_143930 [Trichoderma atroviride
IMI 206040]
Length = 90
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P L+ + + V+V+L G +Y+G L +D YMN+ + TEEY+N +L + G IR
Sbjct: 8 PRPMLQDLVDKTVLVRLKWGETEYKGRLVSIDSYMNLQLSNTEEYLNDKLTGELGQVLIR 67
Query: 74 GNNVLYI 80
NNVLYI
Sbjct: 68 CNNVLYI 74
>gi|20150503|pdb|1JRI|A Chain A, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150504|pdb|1JRI|B Chain B, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150505|pdb|1JRI|C Chain C, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150506|pdb|1JRI|D Chain D, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150507|pdb|1JRI|E Chain E, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150508|pdb|1JRI|F Chain F, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150509|pdb|1JRI|G Chain G, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150510|pdb|1JRI|H Chain H, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150511|pdb|1JRI|I Chain I, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150512|pdb|1JRI|J Chain J, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150513|pdb|1JRI|K Chain K, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150514|pdb|1JRI|L Chain L, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150515|pdb|1JRI|M Chain M, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150516|pdb|1JRI|N Chain N, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit
Length = 85
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
+ P D L + PV++KL ++RG+L D +MN+ + EE +G++ + G
Sbjct: 9 VNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGT 68
Query: 70 AFIRGNNVLYISTSK 84
IRG+N++YIS K
Sbjct: 69 VLIRGDNIVYISRGK 83
>gi|448089999|ref|XP_004196959.1| Piso0_004193 [Millerozyma farinosa CBS 7064]
gi|448094377|ref|XP_004197990.1| Piso0_004193 [Millerozyma farinosa CBS 7064]
gi|359378381|emb|CCE84640.1| Piso0_004193 [Millerozyma farinosa CBS 7064]
gi|359379412|emb|CCE83609.1| Piso0_004193 [Millerozyma farinosa CBS 7064]
Length = 100
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEE--YVNGQLKNKY-GDA 70
P FLK++ +PV+V+L ++Y+G L +D YMN+ ++ T E + NG+ K + G+
Sbjct: 9 PKPFLKTLINKPVIVRLKWNRMEYKGKLLAIDNYMNLQLDHTYECMFENGERKEELIGEI 68
Query: 71 FIRGNNVLYI 80
FIR NNVLYI
Sbjct: 69 FIRCNNVLYI 78
>gi|68068315|ref|XP_676067.1| small nuclear ribonucleoprotein F [Plasmodium berghei strain
ANKA]
gi|70931673|ref|XP_737485.1| small nuclear ribonucleoprotein F [Plasmodium chabaudi chabaudi]
gi|56495585|emb|CAI00140.1| small nuclear ribonucleoprotein F, putative [Plasmodium berghei]
gi|56512916|emb|CAH79490.1| small nuclear ribonucleoprotein F, putative [Plasmodium chabaudi
chabaudi]
Length = 64
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 11 TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
T P FL S+ G V++KL G++Y+G L D YMNI + EE++ G+ K G+
Sbjct: 2 TPLNPKPFLNSLVGNRVIIKLKWGMEYKGNLKSFDAYMNIRLTSAEEWIRGEYKGTLGEI 61
Query: 71 FIR 73
F+R
Sbjct: 62 FLR 64
>gi|340522693|gb|EGR52926.1| predicted protein [Trichoderma reesei QM6a]
Length = 90
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P L+ + + V+V+L G +Y+G L +D YMN+ + TEEY+N +L + G IR
Sbjct: 8 PRPMLQDLVDKTVLVRLKWGETEYKGRLVSIDSYMNLQLANTEEYLNEKLTGELGQVLIR 67
Query: 74 GNNVLYI 80
NNVLYI
Sbjct: 68 CNNVLYI 74
>gi|164655489|ref|XP_001728874.1| hypothetical protein MGL_4041 [Malassezia globosa CBS 7966]
gi|159102760|gb|EDP41660.1| hypothetical protein MGL_4041 [Malassezia globosa CBS 7966]
Length = 38
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 29/34 (85%)
Query: 48 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 81
MNIAME T E+V+G LK YGDAFIRGNNVLYI+
Sbjct: 1 MNIAMEDTTEHVDGVLKTTYGDAFIRGNNVLYIT 34
>gi|410955248|ref|XP_003984268.1| PREDICTED: uncharacterized protein LOC101089093 [Felis catus]
Length = 285
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 40/76 (52%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FLK + G+PV+ KL S ++Y+ L DGYMN+ + E+Y++G +
Sbjct: 208 PKTFLKGLTGKPVMTKLKSRMEYKDHLVSADGYMNMQLANAEKYIDGASSGHFSQVITGC 267
Query: 75 NNVLYISTSKRTLADG 90
NNVLY + DG
Sbjct: 268 NNVLYNRGVEEEEEDG 283
>gi|340343951|ref|ZP_08667083.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519092|gb|EGP92815.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 81
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
+++ K P L+ + V V+L + V+Y+G + +D YMN+ M EE+ +G++ YG
Sbjct: 4 TSSAKRPLTTLQKSTKKKVTVRLKNEVEYKGKMDNVDSYMNLIMTDAEEFHDGKVIANYG 63
Query: 69 DAFIRGNNVLYI 80
+RGNNVL+I
Sbjct: 64 RVIVRGNNVLFI 75
>gi|451845060|gb|EMD58374.1| hypothetical protein COCSADRAFT_165582 [Cochliobolus sativus
ND90Pr]
gi|451992499|gb|EMD84982.1| hypothetical protein COCHEDRAFT_1024734 [Cochliobolus
heterostrophus C5]
Length = 93
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P L+S+ + +VV+L G +Y+G L +D YMNI + TEE+VNG G IR
Sbjct: 9 PRPLLQSLVDKDIVVRLKWGETEYKGRLVSVDLYMNIQLSNTEEFVNGVSSGTLGQVLIR 68
Query: 74 GNNVLYISTSKRT 86
NNVL+I ++
Sbjct: 69 CNNVLWIGKAEEV 81
>gi|312136602|ref|YP_004003939.1| small nuclear ribonucleoprotein, lsm family [Methanothermus
fervidus DSM 2088]
gi|311224321|gb|ADP77177.1| Small nuclear ribonucleoprotein, LSM family [Methanothermus
fervidus DSM 2088]
Length = 80
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+ P D L PV+++L ++RGIL D +MN+ + EE NG++ K G I
Sbjct: 11 QRPLDTLGKSLNSPVLIRLKGEREFRGILKSFDLHMNLVLNDAEEIENGEVTRKLGTVLI 70
Query: 73 RGNNVLYIS 81
RG+N++YIS
Sbjct: 71 RGDNIVYIS 79
>gi|154286416|ref|XP_001544003.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150407644|gb|EDN03185.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 80
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 18 FLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNN 76
L+S+ V+V+L G +Y+G L +D YMNI + TEE++ G+ G IR NN
Sbjct: 1 MLQSLVNEDVLVRLKWGHTEYKGQLVSVDSYMNIQLSNTEEFIEGKSTGSLGQVLIRCNN 60
Query: 77 VLYISTSK 84
VL+IS +K
Sbjct: 61 VLWISAAK 68
>gi|395646750|ref|ZP_10434610.1| Like-Sm ribonucleoprotein core [Methanofollis liminatans DSM
4140]
gi|395443490|gb|EJG08247.1| Like-Sm ribonucleoprotein core [Methanofollis liminatans DSM
4140]
Length = 88
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 7 KGSATTKTPADFL-KSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 65
K A TK P + L + + G+PV++ L G + RG+L D ++N+ +++ EE V+G +
Sbjct: 10 KVIAMTKRPLEILDQVLNGQPVIISLKGGHEIRGVLQGYDVHLNLVLDRAEEEVDGAVV- 68
Query: 66 KYGDAFIRGNNVLYISTS 83
K G +RG+NV+YIS S
Sbjct: 69 KRGTLIVRGDNVIYISPS 86
>gi|38344578|emb|CAE05536.2| OSJNBa0053B21.10 [Oryza sativa Japonica Group]
Length = 582
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/26 (96%), Positives = 26/26 (100%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYR 38
KTP+DFLKSIRGRPVVVKLNSGVDYR
Sbjct: 19 KTPSDFLKSIRGRPVVVKLNSGVDYR 44
>gi|116309348|emb|CAH66431.1| OSIGBa0096P03.5 [Oryza sativa Indica Group]
Length = 413
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/26 (96%), Positives = 26/26 (100%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYR 38
KTP+DFLKSIRGRPVVVKLNSGVDYR
Sbjct: 19 KTPSDFLKSIRGRPVVVKLNSGVDYR 44
>gi|330931612|ref|XP_003303470.1| hypothetical protein PTT_15691 [Pyrenophora teres f. teres 0-1]
gi|311320515|gb|EFQ88431.1| hypothetical protein PTT_15691 [Pyrenophora teres f. teres 0-1]
Length = 149
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P L+S+ + +VV+L G +Y+G L +D YMNI + TEE+VNG G IR
Sbjct: 65 PRPLLQSLVDKDIVVRLKWGETEYKGRLISVDLYMNIQLSNTEEFVNGVSSGTLGQVLIR 124
Query: 74 GNNVLYI 80
NNVL+I
Sbjct: 125 CNNVLWI 131
>gi|241955739|ref|XP_002420590.1| small nuclear ribonucleoprotein, putative [Candida dubliniensis
CD36]
gi|223643932|emb|CAX41669.1| small nuclear ribonucleoprotein, putative [Candida dubliniensis
CD36]
Length = 131
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 15 PADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQL----KNKYGD 69
P FLKS+ G+ ++V+L + Y+GIL +D YMN+ ++QT E ++ + + G+
Sbjct: 9 PTPFLKSLIGKSIIVRLKWNKTQYKGILISIDNYMNLQLDQTYEIISDDINTTKEELIGE 68
Query: 70 AFIRGNNVLYISTSKR 85
FIR NNVL+I K
Sbjct: 69 IFIRCNNVLFIREYKE 84
>gi|189188806|ref|XP_001930742.1| small nuclear ribonucleoprotein F [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187972348|gb|EDU39847.1| small nuclear ribonucleoprotein F [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 93
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P L+S+ + +VV+L G +Y+G L +D YMNI + TEE+VNG G IR
Sbjct: 9 PRPLLQSLVDKDIVVRLKWGETEYKGRLISVDLYMNIQLSNTEEFVNGVSSGTLGQVLIR 68
Query: 74 GNNVLYI 80
NNVL+I
Sbjct: 69 CNNVLWI 75
>gi|367035568|ref|XP_003667066.1| hypothetical protein MYCTH_2316657 [Myceliophthora thermophila
ATCC 42464]
gi|347014339|gb|AEO61821.1| hypothetical protein MYCTH_2316657 [Myceliophthora thermophila
ATCC 42464]
Length = 91
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL+ + + V+V+L G +Y+G L +D YMNI + TEE+++ + G IR
Sbjct: 8 PRPFLQDLVNKDVIVRLKWGETEYKGRLVSIDSYMNIQLSNTEEFIDRKFTGALGQVLIR 67
Query: 74 GNNVLYISTS 83
NNVLY+ +
Sbjct: 68 CNNVLYVKAA 77
>gi|401839675|gb|EJT42789.1| LSM6-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 86
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 8/82 (9%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQ-TEEYVN--GQL 63
+GS TT +FL I G+ V VKL SG+ Y G L +DG+MN+A+ TE Y + +L
Sbjct: 8 EGSVTT----EFLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNKSKL 63
Query: 64 KNKY-GDAFIRGNNVLYISTSK 84
N++ D F+RG V+YIS K
Sbjct: 64 LNRFNNDVFLRGTQVMYISELK 85
>gi|294936349|ref|XP_002781728.1| small nuclear ribonucleoprotein F, putative [Perkinsus marinus
ATCC 50983]
gi|239892650|gb|EER13523.1| small nuclear ribonucleoprotein F, putative [Perkinsus marinus
ATCC 50983]
Length = 88
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKY 67
S P FL + G+ V+V+L G ++ +G L +D +MN+ ++ EE+ G K
Sbjct: 2 SVVPVNPQPFLNDLTGQEVLVRLKWGTLELKGRLQSVDTFMNLRLDHCEEWQAGNFKGAL 61
Query: 68 GDAFIRGNNVLYISTSKRT 86
GD IR NNVLY+ + +
Sbjct: 62 GDVLIRCNNVLYVRAASSS 80
>gi|304314789|ref|YP_003849936.1| small nuclear ribonucleoprotein [Methanothermobacter marburgensis
str. Marburg]
gi|302588248|gb|ADL58623.1| small nuclear ribonucleoprotein [Methanothermobacter marburgensis
str. Marburg]
Length = 78
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
+ P D L + PV++KL ++RG+L D +MN+ + EE +G++ + G
Sbjct: 6 VNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGT 65
Query: 70 AFIRGNNVLYIS 81
IRG+N++YIS
Sbjct: 66 VLIRGDNIVYIS 77
>gi|341038876|gb|EGS23868.1| small nuclear ribonucleoprotein F-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 94
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL+ + + V+V+L G +Y+G L +D YMNI + TEE++N + G IR
Sbjct: 10 PRPFLQDLVNQDVIVRLKWGQTEYKGRLVSIDSYMNIQLANTEEFINYKSTGHLGQVLIR 69
Query: 74 GNNVLYISTS 83
NNVL+++ +
Sbjct: 70 CNNVLWVTAA 79
>gi|13786869|pdb|1I81|A Chain A, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786870|pdb|1I81|B Chain B, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786871|pdb|1I81|C Chain C, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786872|pdb|1I81|D Chain D, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786873|pdb|1I81|E Chain E, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786874|pdb|1I81|F Chain F, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786875|pdb|1I81|G Chain G, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|27573929|pdb|1MGQ|A Chain A, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573930|pdb|1MGQ|B Chain B, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573931|pdb|1MGQ|C Chain C, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573932|pdb|1MGQ|D Chain D, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573933|pdb|1MGQ|E Chain E, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573934|pdb|1MGQ|F Chain F, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573935|pdb|1MGQ|G Chain G, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
Length = 83
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
+ P D L + PV++KL ++RG+L D +MN+ + EE +G++ + G
Sbjct: 11 VNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGT 70
Query: 70 AFIRGNNVLYIS 81
IRG+N++YIS
Sbjct: 71 VLIRGDNIVYIS 82
>gi|212530490|ref|XP_002145402.1| small nuclear ribonucleoprotein SmF, putative [Talaromyces
marneffei ATCC 18224]
gi|210074800|gb|EEA28887.1| small nuclear ribonucleoprotein SmF, putative [Talaromyces
marneffei ATCC 18224]
Length = 88
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL++ G ++++L G +YRG L +D YMN+ + TEEY++G+ G IR
Sbjct: 8 PRPFLQARVGTELIIRLKWGQTEYRGTLESIDSYMNVLLRDTEEYIDGKNTGSLGLVLIR 67
Query: 74 GNNVLYISTS 83
NN+L+++++
Sbjct: 68 CNNILWMASA 77
>gi|355571637|ref|ZP_09042865.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
gi|354825270|gb|EHF09500.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
Length = 75
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 12 TKTPADFLKSIRGR-PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
TK P D L + R PV+V L G + RG+L D +MN+ +++ EE GQ ++ G
Sbjct: 2 TKRPLDILDQVLNRQPVIVSLKGGRELRGVLQGYDVHMNLVLDKAEEIEGGQSRS-VGTL 60
Query: 71 FIRGNNVLYISTS 83
+RG+NV+YIS S
Sbjct: 61 IVRGDNVIYISPS 73
>gi|15678676|ref|NP_275791.1| small nuclear ribonucleoprotein [Methanothermobacter
thermautotrophicus str. Delta H]
gi|6094215|sp|O26745.1|RUXX_METTH RecName: Full=Putative snRNP Sm-like protein
gi|2621731|gb|AAB85154.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 81
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
+ P D L + PV++KL ++RG+L D +MN+ + EE +G++ + G
Sbjct: 9 VNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGT 68
Query: 70 AFIRGNNVLYIS 81
IRG+N++YIS
Sbjct: 69 VLIRGDNIVYIS 80
>gi|156846667|ref|XP_001646220.1| hypothetical protein Kpol_1013p34 [Vanderwaltozyma polyspora DSM
70294]
gi|156116894|gb|EDO18362.1| hypothetical protein Kpol_1013p34 [Vanderwaltozyma polyspora DSM
70294]
Length = 84
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FLK + +PVVV L + Y+G L D Y N+ + EE ++ K K GD FIR
Sbjct: 9 PKPFLKELVNKPVVVTLKFNKTQYKGQLVSTDNYFNLQLTDAEEVIDNVSKGKVGDIFIR 68
Query: 74 GNNVLYI 80
NNVL++
Sbjct: 69 CNNVLWV 75
>gi|123474198|ref|XP_001320283.1| Sm protein [Trichomonas vaginalis G3]
gi|121903085|gb|EAY08060.1| Sm protein [Trichomonas vaginalis G3]
Length = 98
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 9 SATTK-TPADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK 66
S TTK P F++S+ + +V+KL ++Y G L D MNI + +T EYV G+ +
Sbjct: 2 SETTKYFPQKFMESLLNKQIVIKLKWENIEYVGTLISFDERMNIHLSETSEYVGGKTEGV 61
Query: 67 YGDAFIRGNNVLYI 80
GD IR NN+L+I
Sbjct: 62 MGDVIIRCNNILHI 75
>gi|14324575|dbj|BAB59502.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
Length = 87
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
M K A TK P D LK+ R V++ + +Y GIL D YMN+ ++ E +N
Sbjct: 1 MPNHMPKTVANTK-PMDVLKNALSRNVLIDVKGNREYSGILEGYDVYMNVVLQNASEIIN 59
Query: 61 GQLKNKYGDAFIRGNNVLYISTSK 84
G+ K + +RG+NV+++S SK
Sbjct: 60 GENKGVFDRILVRGDNVIFVSPSK 83
>gi|322699689|gb|EFY91449.1| small nuclear ribonucleoprotein SmF [Metarhizium acridum CQMa
102]
Length = 87
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P L+ + +PV V+L G V+Y+G L +D YMN+ + TEEYV+ + G IR
Sbjct: 8 PRPMLQELVNKPVFVRLKWGQVEYKGTLVSVDSYMNLQLSGTEEYVSDKPTGLLGQVLIR 67
Query: 74 GNNVLYI 80
NNVL++
Sbjct: 68 CNNVLWV 74
>gi|407926562|gb|EKG19529.1| hypothetical protein MPH_03393 [Macrophomina phaseolina MS6]
Length = 93
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P L ++ G+ + V+L G +Y G L D YMN+ + TEE++NG+ + G IR
Sbjct: 9 PRPMLLALVGKEIRVRLKWGYTEYTGALVSADSYMNLQLTNTEEFINGESQGTLGQVLIR 68
Query: 74 GNNVLYIS 81
NNVL+IS
Sbjct: 69 CNNVLWIS 76
>gi|27574150|pdb|1N9S|A Chain A, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574151|pdb|1N9S|B Chain B, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574152|pdb|1N9S|C Chain C, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574153|pdb|1N9S|D Chain D, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574154|pdb|1N9S|E Chain E, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574155|pdb|1N9S|F Chain F, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574156|pdb|1N9S|G Chain G, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574157|pdb|1N9S|H Chain H, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574158|pdb|1N9S|I Chain I, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574159|pdb|1N9S|J Chain J, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574160|pdb|1N9S|K Chain K, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574161|pdb|1N9S|L Chain L, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574162|pdb|1N9S|M Chain M, Crystal Structure Of Yeast Smf In Spacegroup P43212
gi|27574163|pdb|1N9S|N Chain N, Crystal Structure Of Yeast Smf In Spacegroup P43212
Length = 93
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYV 59
MS + + P FLK + V VKL + +YRG L D Y N+ + + EE+V
Sbjct: 8 MSESSDISAMQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFV 67
Query: 60 NGQLKNKYGDAFIRGNNVLYI 80
G G+ FIR NNVLYI
Sbjct: 68 AGVSHGTLGEIFIRSNNVLYI 88
>gi|322710221|gb|EFZ01796.1| small nuclear ribonucleoprotein SmF [Metarhizium anisopliae ARSEF
23]
Length = 87
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P L+ + +PV V+L G V+Y+G L +D YMN+ + TEEYV+ + G IR
Sbjct: 8 PRPMLQELVNKPVFVRLKWGQVEYKGTLVSVDSYMNLQLAGTEEYVSDKPTGLLGQVLIR 67
Query: 74 GNNVLYI 80
NNVL++
Sbjct: 68 CNNVLWV 74
>gi|50422347|ref|XP_459736.1| DEHA2E09878p [Debaryomyces hansenii CBS767]
gi|49655404|emb|CAG87972.1| DEHA2E09878p [Debaryomyces hansenii CBS767]
Length = 101
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 4/76 (5%)
Query: 15 PADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEE--YVNGQLKNKY-GDA 70
P FLK++ G+ V+V+L + +Y+G L +D YMN+ +++T E Y +G+ K + G+
Sbjct: 9 PKPFLKTLIGKQVIVRLKWNKTEYKGTLISIDNYMNLQLDKTSEVIYEDGEKKEEVIGEI 68
Query: 71 FIRGNNVLYISTSKRT 86
FIR NNVL+I K
Sbjct: 69 FIRCNNVLFIREDKEV 84
>gi|126178181|ref|YP_001046146.1| like-Sm ribonucleoprotein, core [Methanoculleus marisnigri JR1]
gi|125860975|gb|ABN56164.1| Small nuclear ribonucleoprotein, LSM family [Methanoculleus
marisnigri JR1]
Length = 75
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 12 TKTPADFLKSIRGR-PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
T P D L + R PV++ L G + RGIL D +MN+ +++ EE V+G K G
Sbjct: 2 TPRPLDILDQVLNRQPVIISLKGGREIRGILQGYDVHMNLVLDKAEEEVDGA-AQKLGTL 60
Query: 71 FIRGNNVLYISTS 83
+RG+NV+YI+ S
Sbjct: 61 IVRGDNVIYITPS 73
>gi|344301854|gb|EGW32159.1| hypothetical protein SPAPADRAFT_61242 [Spathaspora passalidarum
NRRL Y-27907]
Length = 117
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 8/78 (10%)
Query: 15 PADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYV-------NGQLKNK 66
P FLKS+ G+ V+V+L + +YRG L +D YMN+ ++QT E + + +
Sbjct: 9 PKPFLKSLIGKQVIVRLKWNKTEYRGTLISIDNYMNLQLDQTYEIIYEVEDGNETKKEES 68
Query: 67 YGDAFIRGNNVLYISTSK 84
G+ FIR NNVL++ +K
Sbjct: 69 IGEIFIRCNNVLFVREAK 86
>gi|303313371|ref|XP_003066697.1| membrane-associated protein, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240106359|gb|EER24552.1| membrane-associated protein, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 91
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 21 SIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLY 79
++ + V+V+L G +Y+G L +D YMNI + TEE+++G+ G IR NNVL+
Sbjct: 16 TLESQDVIVRLKWGQTEYKGQLVSVDSYMNIQLSNTEEFIDGKNTGTLGQVLIRCNNVLW 75
Query: 80 ISTSK 84
IS +K
Sbjct: 76 ISAAK 80
>gi|13541187|ref|NP_110875.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
gi|20178114|sp|Q97BU5.2|RUXX_THEVO RecName: Full=Putative snRNP Sm-like protein
Length = 83
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK 66
K A TK P D LK+ R V++ + +Y GIL D YMN+ ++ E +NG+ K
Sbjct: 3 KTVANTK-PMDVLKNALSRNVLIDVKGNREYSGILEGYDVYMNVVLQNASEIINGENKGV 61
Query: 67 YGDAFIRGNNVLYISTSK 84
+ +RG+NV+++S SK
Sbjct: 62 FDRILVRGDNVIFVSPSK 79
>gi|330507312|ref|YP_004383740.1| LSM domain-containing protein [Methanosaeta concilii GP6]
gi|328928120|gb|AEB67922.1| LSM domain protein [Methanosaeta concilii GP6]
Length = 78
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+ P D L PV+VKL G +RG L D +MN+ M++TEE G + G +
Sbjct: 9 QRPLDILNESLNGPVIVKLKDGRVFRGELQGYDIHMNLVMDKTEEVAEGAVARNIGTVIV 68
Query: 73 RGNNVLYIS 81
RG+NV+YIS
Sbjct: 69 RGDNVVYIS 77
>gi|396462236|ref|XP_003835729.1| similar to small nuclear ribonucleoprotein protein F
[Leptosphaeria maculans JN3]
gi|312212281|emb|CBX92364.1| similar to small nuclear ribonucleoprotein protein F
[Leptosphaeria maculans JN3]
Length = 93
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P L+++ + +VV+L G +Y+G L +D YMNI + TEE+VNG G IR
Sbjct: 9 PRPLLQNLVDKDIVVRLKWGETEYKGRLVSVDLYMNIQLSNTEEFVNGVSSGTLGQVLIR 68
Query: 74 GNNVLYISTSKRT 86
NNVL+I ++
Sbjct: 69 CNNVLWIGNAEEV 81
>gi|294874707|ref|XP_002767059.1| small nuclear ribonucleoprotein F, putative [Perkinsus marinus
ATCC 50983]
gi|239868487|gb|EEQ99776.1| small nuclear ribonucleoprotein F, putative [Perkinsus marinus
ATCC 50983]
Length = 88
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKY 67
S P FL + G+ V+V+L + ++ +G L +D +MN+ ++ EE+ +G K
Sbjct: 2 SVVPVNPQPFLNDLTGQEVLVRLKWATLELKGRLQSVDTFMNLRLDHCEEWQSGNFKGAL 61
Query: 68 GDAFIRGNNVLYISTSKRT 86
GD IR NNVLY+ + +
Sbjct: 62 GDVLIRCNNVLYVRAASSS 80
>gi|219851061|ref|YP_002465493.1| Sm ribonucleoprotein-like protein [Methanosphaerula palustris
E1-9c]
gi|219545320|gb|ACL15770.1| Like-Sm ribonucleoprotein core [Methanosphaerula palustris E1-9c]
Length = 75
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 12 TKTPADFLKSI-RGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
TK P D L + G PV+V L + RG+L D +MN+ +++ EE +G + K G
Sbjct: 2 TKRPLDILDQVLNGEPVIVSLKGDRELRGVLQGYDVHMNLVLDKAEEVTDGATQ-KIGTL 60
Query: 71 FIRGNNVLYISTS 83
+RG+NV+YIS S
Sbjct: 61 IVRGDNVIYISPS 73
>gi|386002644|ref|YP_005920943.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
gi|357210700|gb|AET65320.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
Length = 72
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
++ P D L PV+VKL G +RG L D +MN+ ++ TEE G+ K G
Sbjct: 2 SQRPLDILNESLNGPVIVKLKDGRAFRGELQGYDIHMNLVLDNTEEIREGEDSKKLGTVV 61
Query: 72 IRGNNVLYIS 81
+RG+NV+YIS
Sbjct: 62 VRGDNVVYIS 71
>gi|378730981|gb|EHY57440.1| small nuclear ribonucleoprotein F [Exophiala dermatitidis
NIH/UT8656]
Length = 93
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 11 TTKTPADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
T P L+ + V+++L G +Y+G L +D YMNI + TEEY++ + G
Sbjct: 4 TPLNPRPLLQQLINDDVIIRLKWGQTEYKGRLISVDSYMNIQLSNTEEYIDRKHTGTLGQ 63
Query: 70 AFIRGNNVLYISTSK 84
IR NNVL+IS +K
Sbjct: 64 VLIRCNNVLWISAAK 78
>gi|6325440|ref|NP_015508.1| Smx3p [Saccharomyces cerevisiae S288c]
gi|1711405|sp|P54999.1|RUXF_YEAST RecName: Full=Small nuclear ribonucleoprotein F; Short=snRNP-F;
AltName: Full=Sm protein F; Short=Sm-F; Short=SmF
gi|786316|gb|AAB68115.1| Smx3p: Sm or Sm-like snRNP protein [Saccharomyces cerevisiae]
gi|809101|emb|CAA58022.1| snRNP protein SmX3 [Saccharomyces cerevisiae]
gi|45269988|gb|AAS56375.1| YPR182W [Saccharomyces cerevisiae]
gi|151942952|gb|EDN61298.1| Sm F [Saccharomyces cerevisiae YJM789]
gi|190408104|gb|EDV11369.1| small nuclear ribonucleoprotein F [Saccharomyces cerevisiae
RM11-1a]
gi|256272443|gb|EEU07425.1| Smx3p [Saccharomyces cerevisiae JAY291]
gi|259150339|emb|CAY87142.1| Smx3p [Saccharomyces cerevisiae EC1118]
gi|285815706|tpg|DAA11598.1| TPA: Smx3p [Saccharomyces cerevisiae S288c]
gi|349581979|dbj|GAA27136.1| K7_Smx3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392296184|gb|EIW07287.1| Smx3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 86
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYV 59
MS + + P FLK + V VKL + +YRG L D Y N+ + + EE+V
Sbjct: 1 MSESSDISAMQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFV 60
Query: 60 NGQLKNKYGDAFIRGNNVLYI 80
G G+ FIR NNVLYI
Sbjct: 61 AGVSHGTLGEIFIRCNNVLYI 81
>gi|27574143|pdb|1N9R|A Chain A, Crystal Structure Of A Heptameric Ring Complex Of Yeast
Smf In Spacegroup P4122
gi|27574144|pdb|1N9R|B Chain B, Crystal Structure Of A Heptameric Ring Complex Of Yeast
Smf In Spacegroup P4122
gi|27574145|pdb|1N9R|C Chain C, Crystal Structure Of A Heptameric Ring Complex Of Yeast
Smf In Spacegroup P4122
gi|27574146|pdb|1N9R|D Chain D, Crystal Structure Of A Heptameric Ring Complex Of Yeast
Smf In Spacegroup P4122
gi|27574147|pdb|1N9R|E Chain E, Crystal Structure Of A Heptameric Ring Complex Of Yeast
Smf In Spacegroup P4122
gi|27574148|pdb|1N9R|F Chain F, Crystal Structure Of A Heptameric Ring Complex Of Yeast
Smf In Spacegroup P4122
gi|27574149|pdb|1N9R|G Chain G, Crystal Structure Of A Heptameric Ring Complex Of Yeast
Smf In Spacegroup P4122
Length = 93
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYV 59
MS + + P FLK + V VKL + +YRG L D Y N+ + + EE+V
Sbjct: 8 MSESSDISAMQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFV 67
Query: 60 NGQLKNKYGDAFIRGNNVLYI 80
G G+ FIR NNVLYI
Sbjct: 68 AGVSHGTLGEIFIRCNNVLYI 88
>gi|73670936|ref|YP_306951.1| small nuclear ribonucleoprotein [Methanosarcina barkeri str.
Fusaro]
gi|121724584|sp|Q465S1.1|RUXX_METBF RecName: Full=Putative snRNP Sm-like protein
gi|72398098|gb|AAZ72371.1| Small nuclear ribonucleoprotein, LSM family [Methanosarcina
barkeri str. Fusaro]
Length = 72
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P D L + PV+V+L ++RG L D +MN+ ++ EE G++ +K+G IRG
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREGEVVSKFGSVVIRG 64
Query: 75 NNVLYIS 81
+NV+Y+S
Sbjct: 65 DNVVYVS 71
>gi|296414624|ref|XP_002836998.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295632846|emb|CAZ81189.1| unnamed protein product [Tuber melanosporum]
Length = 79
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 18 FLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNN 76
L+S+ + V V+L G +Y+G L D YMNI + TEE+V+G+ G IR NN
Sbjct: 1 MLQSLVNQSVTVRLKWGQTEYKGTLVSADSYMNIQLSGTEEFVDGKSTGSLGQVLIRCNN 60
Query: 77 VLYIS 81
VL+IS
Sbjct: 61 VLWIS 65
>gi|148642242|ref|YP_001272755.1| small nuclear ribonucleoprotein [Methanobrevibacter smithii ATCC
35061]
gi|222444586|ref|ZP_03607101.1| hypothetical protein METSMIALI_00198 [Methanobrevibacter smithii
DSM 2375]
gi|261350875|ref|ZP_05976292.1| like-Sm ribonucleoprotein, core [Methanobrevibacter smithii DSM
2374]
gi|148551259|gb|ABQ86387.1| snRNP Sm-like protein [Methanobrevibacter smithii ATCC 35061]
gi|222434151|gb|EEE41316.1| LSM domain protein [Methanobrevibacter smithii DSM 2375]
gi|288860212|gb|EFC92510.1| like-Sm ribonucleoprotein, core [Methanobrevibacter smithii DSM
2374]
Length = 76
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
+ P D L PV++KL ++RGIL D +MN+ + EE +G++ + G
Sbjct: 6 VQRPLDALGKSVNSPVLIKLKGDREFRGILKSFDLHMNLVLNDAEELQDGEVTRRLGVVL 65
Query: 72 IRGNNVLYIS 81
IRG+N++YIS
Sbjct: 66 IRGDNIVYIS 75
>gi|397779277|ref|YP_006543750.1| Sm ribonucleoprotein [Methanoculleus bourgensis MS2]
gi|396937779|emb|CCJ35034.1| Sm ribonucleoprotein [Methanoculleus bourgensis MS2]
Length = 75
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 12 TKTPADFLKSIRGR-PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
T P D L + R PV++ L G + RG+L D +MN+ +++ EE ++G ++ K G
Sbjct: 2 TPRPLDILDQVLNRQPVIISLKGGREIRGVLQGYDVHMNLVLDKAEEEMDGAVQ-KLGTL 60
Query: 71 FIRGNNVLYISTS 83
+RG+NV+YI+ S
Sbjct: 61 IVRGDNVIYITPS 73
>gi|410952460|ref|XP_003982898.1| PREDICTED: small nuclear ribonucleoprotein F-like [Felis catus]
Length = 82
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + GRPV+VKL + L +DGYMN+ + TEE+++G L G+ F
Sbjct: 7 PKHFLNGLTGRPVMVKLKGEWSTKATLVSVDGYMNMQLANTEEHIDGVLSGHLGEVF--- 63
Query: 75 NNVLYI 80
VLYI
Sbjct: 64 -KVLYI 68
>gi|323454563|gb|EGB10433.1| hypothetical protein AURANDRAFT_22949 [Aureococcus
anophagefferens]
Length = 98
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 15/89 (16%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG------ 68
P FL + G+ V+VKL G++Y G L +D YMN+ + T+EY++G++ + G
Sbjct: 6 PKPFLNDLTGKNVLVKLKWGMEYEGKLLSVDSYMNVQLGDTKEYIDGEMAGELGARPAPA 65
Query: 69 ---------DAFIRGNNVLYISTSKRTLA 88
+ IR NNV+Y+ + A
Sbjct: 66 FSSPTDHKREVLIRCNNVMYLRKAPEAAA 94
>gi|452838673|gb|EME40613.1| hypothetical protein DOTSEDRAFT_27245 [Dothistroma septosporum
NZE10]
Length = 89
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P L+S+ + V++K+ G +Y G L +D YMNI + E+ +GQ G IR
Sbjct: 8 PRPMLQSLVDKEVIIKIKWGQEYTGKLVSVDSYMNIQLSGCSEWKDGQDMGVLGQVLIRC 67
Query: 75 NNVLYISTSKRTLADG 90
NNVL+IS + +G
Sbjct: 68 NNVLWISARNQKQENG 83
>gi|408381788|ref|ZP_11179336.1| small nuclear ribonucleoprotein [Methanobacterium formicicum DSM
3637]
gi|407815719|gb|EKF86289.1| small nuclear ribonucleoprotein [Methanobacterium formicicum DSM
3637]
Length = 80
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
+ T P D L V++KL G ++RG+L D +MN+ + EE +G+ + G
Sbjct: 6 NVNTSRPLDVLGRALNSQVLIKLKGGREFRGVLESFDMHMNLVLNDAEELESGESSRRLG 65
Query: 69 DAFIRGNNVLYIS 81
IRG+N++YIS
Sbjct: 66 VVLIRGDNIVYIS 78
>gi|380488855|emb|CCF37095.1| small nuclear ribonucleoprotein F [Colletotrichum higginsianum]
Length = 88
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P L+ + + +VV+L G +Y+G L +D YMNI + EEY++ +L G IR
Sbjct: 8 PRPMLQDLVNQDIVVRLKWGETEYKGKLVSIDSYMNIQLSGAEEYIDQKLTGALGQVLIR 67
Query: 74 GNNVLYISTSKR 85
NNVL+I +K+
Sbjct: 68 CNNVLWIRGAKQ 79
>gi|259483935|tpe|CBF79732.1| TPA: small nuclear ribonucleoprotein SmF, putative
(AFU_orthologue; AFUA_2G15500) [Aspergillus nidulans
FGSC A4]
Length = 88
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL++ G V+V+L G +Y+G L +D YMN+ + TEE+++G+ G IR
Sbjct: 8 PRPFLQARVGTEVIVRLKWGQTEYKGRLESIDSYMNVLLRDTEEFIDGKPTGTLGLVLIR 67
Query: 74 GNNVLYISTSK 84
NN+L++ +++
Sbjct: 68 CNNILWMGSAE 78
>gi|430811435|emb|CCJ31076.1| unnamed protein product [Pneumocystis jirovecii]
Length = 67
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL+ + G+ V+VKL G +Y G L D YMNI + TEE+V+G+ + G+ IR
Sbjct: 9 PKPFLQGLAGQTVIVKLKWGQEYIGFLQSTDSYMNIQLANTEEFVDGKNTGQLGEVLIR 67
>gi|327401120|ref|YP_004341959.1| snRNP Sm-like protein [Archaeoglobus veneficus SNP6]
gi|327316628|gb|AEA47244.1| snRNP Sm-like protein [Archaeoglobus veneficus SNP6]
Length = 74
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P D L PV+V+L G ++RGIL D +MN+ ++ EE G++ K G IRG
Sbjct: 5 PLDVLNKALQTPVLVRLKGGREFRGILNGYDIHMNLVLQNAEEIQGGEVIRKLGSVVIRG 64
Query: 75 NNVLYISTS 83
+ V+++S S
Sbjct: 65 DTVVFVSPS 73
>gi|326473004|gb|EGD97013.1| LSM domain-containing protein [Trichophyton tonsurans CBS 112818]
Length = 107
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 27 VVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSK 84
+VV+L G +Y+G L +D YMNI + QTEE+++G+ G+ IR NNVL+I +K
Sbjct: 37 IVVRLKWGQTEYKGRLISVDSYMNIQLSQTEEFIDGKNTGTLGEVLIRCNNVLWIGNAK 95
>gi|393795269|ref|ZP_10378633.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
BG20]
Length = 81
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
+++ K P L+ + V V+L + V+Y+G + +D YMN+ M EE +G+ YG
Sbjct: 4 TSSAKRPLTTLQKSTKKKVTVRLKNEVEYKGKMDNVDSYMNLIMTDAEELHDGKTIANYG 63
Query: 69 DAFIRGNNVLYI 80
+RGNNVL+I
Sbjct: 64 RVIVRGNNVLFI 75
>gi|82795247|ref|NP_010666.2| Lsm6p [Saccharomyces cerevisiae S288c]
gi|189028755|sp|A6ZYX7.1|LSM6_YEAS7 RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|189047098|sp|Q06406.2|LSM6_YEAST RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|151942351|gb|EDN60707.1| snRNP protein [Saccharomyces cerevisiae YJM789]
gi|190404686|gb|EDV07953.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
gi|285811396|tpg|DAA12220.1| TPA: Lsm6p [Saccharomyces cerevisiae S288c]
Length = 86
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM----EQTEEYVNGQ 62
+GS TT +FL I G+ V VKL SG+ Y G L +DG+MN+A+ E E N
Sbjct: 8 EGSVTT----EFLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNNNKL 63
Query: 63 LKNKYGDAFIRGNNVLYISTSK 84
L D F+RG V+YIS K
Sbjct: 64 LNKFNSDVFLRGTQVMYISEQK 85
>gi|288932200|ref|YP_003436260.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
gi|288894448|gb|ADC65985.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
Length = 73
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P D L PV+V+L G ++RG L D +MN+ + EE NG++ K G IRG
Sbjct: 4 PLDVLNKALKTPVLVRLKGGREFRGTLDGYDIHMNLVLVDAEEIQNGEVVRKLGSVVIRG 63
Query: 75 NNVLYISTSK 84
+ V+++S S+
Sbjct: 64 DTVVFVSPSQ 73
>gi|449018669|dbj|BAM82071.1| Sm protein F [Cyanidioschyzon merolae strain 10D]
Length = 90
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%)
Query: 8 GSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKY 67
G A P + L +++G V V+L ++Y G+LA D Y N+ +E EE
Sbjct: 5 GFAEAVKPTNLLSALQGNRVSVRLKWDLEYTGLLASYDSYFNLELEHAEELQPDGSSLPL 64
Query: 68 GDAFIRGNNVLYISTSKRTLA 88
GD IR NNVLYI + T+
Sbjct: 65 GDMIIRCNNVLYIRDLRSTVP 85
>gi|410720309|ref|ZP_11359665.1| small nuclear ribonucleoprotein [Methanobacterium sp. Maddingley
MBC34]
gi|410601091|gb|EKQ55611.1| small nuclear ribonucleoprotein [Methanobacterium sp. Maddingley
MBC34]
Length = 100
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
+ T P D L V++KL G ++RG+L D +MN+ + EE +G+ + G
Sbjct: 26 NVNTSRPLDVLGRALNSQVLIKLKGGREFRGVLESFDMHMNLVLNDAEELESGESSRRLG 85
Query: 69 DAFIRGNNVLYIS 81
IRG+N++YIS
Sbjct: 86 VVLIRGDNIVYIS 98
>gi|281344696|gb|EFB20280.1| hypothetical protein PANDA_013190 [Ailuropoda melanoleuca]
Length = 75
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + GRPV+ +L G++ +G L + GYMN+ + +E ++G L + + I+
Sbjct: 4 PEPFLNGLPGRPVMGELQWGMECKGSLVLVGGYMNMQLANVKERIDGILSGRLSEVLIKR 63
Query: 75 NNVLYISTSK 84
NNV YI +++
Sbjct: 64 NNVFYIRSTE 73
>gi|407463901|ref|YP_006774783.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
gi|407047089|gb|AFS81841.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
Length = 81
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S + K P L+ + V V+L + V+Y+G + +D YMN+ M EE +G+ YG
Sbjct: 4 SNSAKRPLTTLQKSTKKKVTVRLKNEVEYKGKMDNVDSYMNLIMTDAEELHDGKTIANYG 63
Query: 69 DAFIRGNNVLYI 80
+RGNNVL+I
Sbjct: 64 RVIVRGNNVLFI 75
>gi|302907735|ref|XP_003049712.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730648|gb|EEU43999.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 89
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P L+ + R V+V+L G V+Y+G L +D YMN+ + TEEY+ + G IR
Sbjct: 8 PRPMLQDLVSRTVLVRLKWGEVEYKGTLVSVDSYMNLQLSGTEEYIADKPTGSLGQVLIR 67
Query: 74 GNNVLYI 80
NNVL++
Sbjct: 68 CNNVLWV 74
>gi|336477290|ref|YP_004616431.1| Sm ribonucleoprotein-like protein [Methanosalsum zhilinae DSM
4017]
gi|335930671|gb|AEH61212.1| Like-Sm ribonucleoprotein core [Methanosalsum zhilinae DSM 4017]
Length = 72
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P D L + PV+V+L ++RG L D +MN+ ++ EE +G++ K G IRG
Sbjct: 5 PLDILNNALNTPVIVRLKGAREFRGELQGYDVHMNLVLDNAEELKDGEIVRKLGSVVIRG 64
Query: 75 NNVLYIS 81
+NV+Y+S
Sbjct: 65 DNVVYLS 71
>gi|256273052|gb|EEU08010.1| Lsm6p [Saccharomyces cerevisiae JAY291]
gi|349577428|dbj|GAA22597.1| K7_Lsm6p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 86
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM----EQTEEYVNGQ 62
+GS TT +FL I G+ V VKL SG+ Y G L +DG+MN+A+ E E N
Sbjct: 8 EGSVTT----EFLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNNNKL 63
Query: 63 LKNKYGDAFIRGNNVLYISTSK 84
L D F+RG V+YIS K
Sbjct: 64 LNKFNNDVFLRGTQVMYISEQK 85
>gi|298674160|ref|YP_003725910.1| Sm ribonucleoprotein-like protein [Methanohalobium evestigatum
Z-7303]
gi|298287148|gb|ADI73114.1| Like-Sm ribonucleoprotein core [Methanohalobium evestigatum
Z-7303]
Length = 72
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P D L + PV+V+L ++RG L D +MN+ ++ EE +G++ K G IRG
Sbjct: 5 PLDILNNALNTPVIVRLRGSREFRGELQGYDVHMNLVLDNAEELNDGEIVRKLGSVVIRG 64
Query: 75 NNVLYIS 81
+NV+Y+S
Sbjct: 65 DNVVYVS 71
>gi|429862333|gb|ELA36985.1| small nuclear ribonucleoprotein [Colletotrichum gloeosporioides
Nara gc5]
Length = 89
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P L+ + + VV++L G +Y+G L +D YMNI + EEY++ ++ G IR
Sbjct: 8 PRPMLQDLVDKDVVIRLKWGDTEYKGKLVSIDSYMNIQLSGAEEYIDQKMTGALGQVLIR 67
Query: 74 GNNVLYISTSKR 85
NNVL+I +K+
Sbjct: 68 CNNVLWIRGAKQ 79
>gi|161527598|ref|YP_001581424.1| like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|407461586|ref|YP_006772903.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
gi|160338899|gb|ABX11986.1| Like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|407045208|gb|AFS79961.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
Length = 81
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S + K P L+ + V V+L + V+Y+G + +D YMN+ M EE G+ YG
Sbjct: 4 SNSAKRPLTTLQKSTKKKVTVRLKNEVEYKGKMDNVDSYMNLIMTDAEELHEGKTIANYG 63
Query: 69 DAFIRGNNVLYI 80
+RGNNVL+I
Sbjct: 64 RVIVRGNNVLFI 75
>gi|255953221|ref|XP_002567363.1| Pc21g02990 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589074|emb|CAP95196.1| Pc21g02990 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 88
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL++ G V+++L G +Y+G L +D YMN+ + T+E+++G+ G IR
Sbjct: 8 PRPFLQARVGTEVLIRLKWGQTEYKGTLESIDSYMNVLLRDTQEFIDGKPTGALGLVLIR 67
Query: 74 GNNVLYISTS 83
NN+LY+ ++
Sbjct: 68 CNNILYLGSA 77
>gi|336271847|ref|XP_003350681.1| hypothetical protein SMAC_02352 [Sordaria macrospora k-hell]
gi|380094843|emb|CCC07345.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 90
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL+ + V V+L G +Y G L +D YMNI + T+EY+N + G IR
Sbjct: 8 PRPFLQDLVNSLVTVRLKWGETEYVGRLVSIDSYMNIQLSDTKEYINRKFTGALGQVLIR 67
Query: 74 GNNVLYI 80
NNVLYI
Sbjct: 68 CNNVLYI 74
>gi|849199|gb|AAB64814.1| Ydr378cp [Saccharomyces cerevisiae]
gi|259145616|emb|CAY78880.1| Lsm6p [Saccharomyces cerevisiae EC1118]
gi|323338113|gb|EGA79347.1| Lsm6p [Saccharomyces cerevisiae Vin13]
gi|323349129|gb|EGA83360.1| Lsm6p [Saccharomyces cerevisiae Lalvin QA23]
gi|365766176|gb|EHN07675.1| Lsm6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392300496|gb|EIW11587.1| Lsm6p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 123
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM----EQTEEYVNGQ 62
+GS TT +FL I G+ V VKL SG+ Y G L +DG+MN+A+ E E N
Sbjct: 45 EGSVTT----EFLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNNNKL 100
Query: 63 LKNKYGDAFIRGNNVLYISTSK 84
L D F+RG V+YIS K
Sbjct: 101 LNKFNSDVFLRGTQVMYISEQK 122
>gi|171690156|ref|XP_001910003.1| hypothetical protein [Podospora anserina S mat+]
gi|170945026|emb|CAP71137.1| unnamed protein product [Podospora anserina S mat+]
Length = 91
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL+ + + V+V+L + +Y+G L +D YMNI + TEE++ + G IR
Sbjct: 9 PRPFLQDLVNKDVIVRLKWNETEYKGRLVSIDSYMNIQLANTEEFIEQKFTGTLGQVLIR 68
Query: 74 GNNVLYI 80
NNVLY+
Sbjct: 69 CNNVLYV 75
>gi|323334029|gb|EGA75414.1| Lsm6p [Saccharomyces cerevisiae AWRI796]
Length = 131
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM----EQTEEYVNGQ 62
+GS TT +FL I G+ V VKL SG+ Y G L +DG+MN+A+ E E N
Sbjct: 45 EGSVTT----EFLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNNNKL 100
Query: 63 LKNKYGDAFIRGNNVLYISTSK 84
L D F+RG V+YIS K
Sbjct: 101 LNKFNSDVFLRGTQVMYISEQK 122
>gi|410671979|ref|YP_006924350.1| Small nuclear ribonucleoprotein, LSM family [Methanolobus
psychrophilus R15]
gi|409171107|gb|AFV24982.1| Small nuclear ribonucleoprotein, LSM family [Methanolobus
psychrophilus R15]
Length = 72
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P D L + PV+V+L ++RG L D +MN+ +++ EE G + K G IRG
Sbjct: 5 PLDILNNALNTPVIVRLKGAREFRGKLQGYDVHMNLVLDEAEELKEGDIVRKLGSVVIRG 64
Query: 75 NNVLYIS 81
+N++Y+S
Sbjct: 65 DNIVYVS 71
>gi|333986739|ref|YP_004519346.1| snRNP Sm-like protein [Methanobacterium sp. SWAN-1]
gi|333824883|gb|AEG17545.1| snRNP Sm-like protein [Methanobacterium sp. SWAN-1]
Length = 80
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 11 TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
T P D L V++KL G ++RG+L D +MN+ + EE +G+ + G
Sbjct: 8 NTSRPLDVLGKSLNSQVLIKLKGGREFRGVLNSFDMHMNLVLNDAEELESGESSRRLGVV 67
Query: 71 FIRGNNVLYIS 81
IRG+N++YIS
Sbjct: 68 LIRGDNIVYIS 78
>gi|20092011|ref|NP_618086.1| small nuclear ribonucleoprotein [Methanosarcina acetivorans C2A]
gi|30173335|sp|Q8TL47.1|RUXX_METAC RecName: Full=Putative snRNP Sm-like protein
gi|19917220|gb|AAM06566.1| Sm protein [Methanosarcina acetivorans C2A]
Length = 72
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P D L + PV+V+L ++RG L D +MN+ ++ EE +G++ +K+ IRG
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELRDGEVVSKFSSVVIRG 64
Query: 75 NNVLYIS 81
+NV+Y+S
Sbjct: 65 DNVVYVS 71
>gi|91774104|ref|YP_566796.1| small nuclear ribonucleoprotein [Methanococcoides burtonii DSM
6242]
gi|121684189|sp|Q12U30.1|RUXX_METBU RecName: Full=Putative snRNP Sm-like protein
gi|91713119|gb|ABE53046.1| Sm or Sm-like protein, RNA-binding [Methanococcoides burtonii DSM
6242]
Length = 72
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P D L V+V+L ++RG+L D +MN+ +++ EE +G++ K G IRG
Sbjct: 5 PLDILNDALNTSVIVRLKGAREFRGVLQGYDVHMNLVLDEAEELKDGEIVRKIGGVVIRG 64
Query: 75 NNVLYIS 81
+NV+Y+S
Sbjct: 65 DNVVYVS 71
>gi|116753552|ref|YP_842670.1| small nuclear ribonucleoprotein [Methanosaeta thermophila PT]
gi|116665003|gb|ABK14030.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
thermophila PT]
Length = 71
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
+ P D L PV+V+L G +RG L D +MN+ +E TEE G + K G
Sbjct: 2 AQRPLDILNESLNSPVIVRLKDGRAFRGELQGYDIHMNLVLENTEEIAEGTAR-KIGAVI 60
Query: 72 IRGNNVLYIS 81
+RG+NV+YIS
Sbjct: 61 VRGDNVVYIS 70
>gi|323305462|gb|EGA59206.1| Lsm6p [Saccharomyces cerevisiae FostersB]
gi|323355542|gb|EGA87363.1| Lsm6p [Saccharomyces cerevisiae VL3]
Length = 123
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM----EQTEEYVNGQ 62
+GS TT +FL I G+ V VKL SG+ Y G L +DG+MN+A+ E E N
Sbjct: 45 EGSVTT----EFLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNNNKL 100
Query: 63 LKNKYGDAFIRGNNVLYISTSK 84
L D F+RG V+YIS K
Sbjct: 101 LNKFNNDVFLRGTQVMYISEQK 122
>gi|145328286|ref|NP_001077889.1| Small nuclear ribonucleoprotein family protein [Arabidopsis
thaliana]
gi|62318628|dbj|BAD95080.1| hypothetical protein [Arabidopsis thaliana]
gi|330251203|gb|AEC06297.1| Small nuclear ribonucleoprotein family protein [Arabidopsis
thaliana]
Length = 61
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 35 VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 80
++Y+G LA +D YMN+ + TEEY++GQL G+ IR NNVLY+
Sbjct: 1 MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYV 46
>gi|452978679|gb|EME78442.1| hypothetical protein MYCFIDRAFT_36806, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 87
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P L+ + + VVVK+ G +Y G L +D YMNI + +E+ +G G IR
Sbjct: 6 PRPMLQGLVNKEVVVKIKWGQEYTGRLVSVDSYMNIQLSGAQEWKDGVDNGVLGQVLIRC 65
Query: 75 NNVLYISTSKRTLADG 90
NNVL+IS K +G
Sbjct: 66 NNVLWISARKSKQENG 81
>gi|310800295|gb|EFQ35188.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 89
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P L+ + + VV++L G +Y+G L +D YMN+ + EEY++ ++ G IR
Sbjct: 8 PRPMLQDLVNQDVVIRLKWGETEYKGKLVSIDSYMNVQLSGAEEYIDQKMTGALGQVLIR 67
Query: 74 GNNVLYISTSKR 85
NNVL+I +K+
Sbjct: 68 CNNVLWIRGAKQ 79
>gi|408404417|ref|YP_006862400.1| snRNP Sm-like protein [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408365013|gb|AFU58743.1| putative snRNP Sm-like protein [Candidatus Nitrososphaera gargensis
Ga9.2]
Length = 145
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P L+ R V V+L S ++Y+G + +D YMN+ + EE+ + YG I
Sbjct: 72 KRPLSTLQRAINRKVAVRLKSEIEYKGRMNNVDSYMNLILTDAEEFNGSDVLANYGKVVI 131
Query: 73 RGNNVLYISTSK 84
RGNNVL+I K
Sbjct: 132 RGNNVLFIKLEK 143
>gi|358373866|dbj|GAA90462.1| DUF866 domain protein [Aspergillus kawachii IFO 4308]
Length = 242
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL++ G V+++L G +Y+G L +D YMN+ + TEE+++G+ G IR
Sbjct: 162 PRPFLQARVGTEVIIRLKWGQTEYKGKLESIDSYMNVLLRDTEEFIDGKNTGTLGLVLIR 221
Query: 74 GNNVLYISTS 83
NN+L++ ++
Sbjct: 222 CNNILWMGSA 231
>gi|85080344|ref|XP_956525.1| hypothetical protein NCU01614 [Neurospora crassa OR74A]
gi|30580500|sp|Q9P5Z8.1|RUXF_NEUCR RecName: Full=Probable small nuclear ribonucleoprotein F;
Short=snRNP-F; AltName: Full=Sm protein F; Short=Sm-F;
Short=SmF
gi|7800974|emb|CAB91372.1| related to snRNP protein SMX3 [Neurospora crassa]
gi|28917592|gb|EAA27289.1| predicted protein [Neurospora crassa OR74A]
gi|336468256|gb|EGO56419.1| hypothetical protein NEUTE1DRAFT_83630 [Neurospora tetrasperma
FGSC 2508]
gi|350289493|gb|EGZ70718.1| small nuclear ribonucleoprotein SmF [Neurospora tetrasperma FGSC
2509]
Length = 90
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL+ + V ++L G +Y G L +D YMNI + T+EY+N + G IR
Sbjct: 8 PRPFLQDLVNSFVTIRLKWGETEYVGRLVSIDSYMNIQLSDTKEYINRKFTGALGQVLIR 67
Query: 74 GNNVLYISTSKRTLADG 90
NNVLYI + G
Sbjct: 68 CNNVLYIKKADEAETSG 84
>gi|255513759|gb|EET90024.1| Sm-family ribonucleoprotein [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 75
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEY-VNGQLKNKYGDAFIR 73
P D L + + V+++L + ++ RG + D +MNI ++ EE NG+LK K G +R
Sbjct: 6 PFDLLNRVISQQVLIRLKNNLNIRGKVTSFDAHMNIVLDNAEELDANGELKAKLGTILLR 65
Query: 74 GNNVLYIS 81
G N++++S
Sbjct: 66 GGNIIFVS 73
>gi|21226441|ref|NP_632363.1| small nuclear ribonucleoprotein [Methanosarcina mazei Go1]
gi|452208952|ref|YP_007489066.1| snRNP Sm-like protein [Methanosarcina mazei Tuc01]
gi|30173324|sp|Q8PZZ9.1|RUXX_METMA RecName: Full=Putative snRNP Sm-like protein
gi|20904702|gb|AAM30035.1| putative snRNP Sm-like protein [Methanosarcina mazei Go1]
gi|452098854|gb|AGF95794.1| snRNP Sm-like protein [Methanosarcina mazei Tuc01]
Length = 72
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P D L + PV+V+L ++RG L D +MN+ ++ EE G++ +K+ IRG
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREGEVVSKFSSVVIRG 64
Query: 75 NNVLYIS 81
+NV+Y+S
Sbjct: 65 DNVVYVS 71
>gi|366989381|ref|XP_003674458.1| hypothetical protein NCAS_0A15220 [Naumovozyma castellii CBS
4309]
gi|342300321|emb|CCC68080.1| hypothetical protein NCAS_0A15220 [Naumovozyma castellii CBS
4309]
Length = 74
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 25 RPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 80
+PVVV L + Y+G L D Y N+ + EE V G+ K K GD FIR NNVL+I
Sbjct: 2 KPVVVTLKFNRTQYKGTLVSTDNYFNVQLSNAEEIVAGEHKGKVGDIFIRCNNVLWI 58
>gi|425767171|gb|EKV05747.1| Small nuclear ribonucleoprotein SmF, putative [Penicillium
digitatum Pd1]
gi|425769096|gb|EKV07603.1| Small nuclear ribonucleoprotein SmF, putative [Penicillium
digitatum PHI26]
Length = 88
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKY 67
S P FL++ G V+++L G +Y+GIL +D Y+N+ + T+E+++G+
Sbjct: 2 SVQPVNPRPFLQARVGTEVLIRLKWGQTEYKGILESVDSYINVLLRDTQEFIDGKPTGAL 61
Query: 68 GDAFIRGNNVLYISTS 83
G IR NN+L++ ++
Sbjct: 62 GLVLIRCNNILWMGSA 77
>gi|302419059|ref|XP_003007360.1| LSM domain-containing protein [Verticillium albo-atrum VaMs.102]
gi|261353011|gb|EEY15439.1| LSM domain-containing protein [Verticillium albo-atrum VaMs.102]
Length = 89
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKY 67
S P L+ + + +VV+L G +Y+G L +D YMNI + EEY++ ++
Sbjct: 2 SFVPLNPRPMLQDLVNKDIVVRLKWGDTEYKGRLVSIDSYMNIQLSGAEEYIDQKMTGAL 61
Query: 68 GDAFIRGNNVLYISTS 83
G IR NNVL+I +
Sbjct: 62 GQVLIRCNNVLWIRAA 77
>gi|440296706|gb|ELP89492.1| small nuclear ribonucleoprotein f, putative [Entamoeba invadens
IP1]
Length = 76
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 16 ADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGN 75
F VKLN G + G L+ +DG MNI +E EE V G N Y FIRGN
Sbjct: 8 VQFFTQALQHECTVKLNDGSKFIGKLSLIDGSMNIVLENAEETVKGVKVNSYPQCFIRGN 67
Query: 76 N-VLYISTS 83
N V YIS +
Sbjct: 68 NKVCYISVN 76
>gi|390937928|ref|YP_006401666.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
fermentans DSM 16532]
gi|390191035|gb|AFL66091.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
fermentans DSM 16532]
Length = 93
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV-NGQLKNKYGDAFI 72
+P LKS G+ V+V++ G++Y G L +D MNI + EY +G+ ++YG I
Sbjct: 12 SPLKVLKSAEGQVVLVRIKGGIEYVGTLDLIDPTMNIVLSDCTEYSGDGRPTSRYGKIII 71
Query: 73 RGNNVLYIST 82
RG++V +IST
Sbjct: 72 RGSHVEFIST 81
>gi|297527121|ref|YP_003669145.1| hypothetical protein Shell_1145 [Staphylothermus hellenicus DSM
12710]
gi|297256037|gb|ADI32246.1| Like-Sm ribonucleoprotein core [Staphylothermus hellenicus DSM
12710]
Length = 95
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEY-VNGQLKNKYGDA 70
T TP +LKS + V+VK+ G +Y G L +D MN+ + +EY NG+ +YG
Sbjct: 12 TATPLKYLKSAINQIVLVKIKDGHEYIGTLDMVDHTMNVVLSNCQEYGDNGKPTARYGKV 71
Query: 71 FIRGNNVLYIS 81
IRG+++++IS
Sbjct: 72 LIRGSHIVFIS 82
>gi|238882707|gb|EEQ46345.1| small nuclear ribonucleoprotein F [Candida albicans WO-1]
Length = 126
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 15 PADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYV------NGQLKNKY 67
P FLKS+ G+ ++V+L + Y+G L +D YMN+ ++QT E + + +
Sbjct: 8 PTPFLKSLIGKTIIVRLKWNKTQYKGTLVSIDNYMNLQLDQTYEIISESTDTDATKEELI 67
Query: 68 GDAFIRGNNVLYISTSKR 85
G+ FIR NNVL+I K
Sbjct: 68 GEIFIRCNNVLFIREYKE 85
>gi|432329090|ref|YP_007247234.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
gi|432135799|gb|AGB05068.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
Length = 75
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P L +PV+V + +YRG+L D ++N+ ++ EE +NG+ K + +RG
Sbjct: 7 PLHVLHESLNKPVLVAMKGNKEYRGVLDGYDQHLNLVLKNVEEIINGESKGVHNVVIVRG 66
Query: 75 NNVLYISTS 83
+NV+YIS
Sbjct: 67 DNVIYISPP 75
>gi|118577120|ref|YP_876863.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
gi|118195641|gb|ABK78559.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
Length = 106
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 8 GSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKY 67
+ K P L+ + V V+L + +Y+G + +D YMN+ M EE+ + ++ Y
Sbjct: 28 SQSNAKRPLTALQKSTKKAVTVRLKNETEYKGKMENVDSYMNLIMTDAEEFHDSKVVANY 87
Query: 68 GDAFIRGNNVLYI 80
G +RGNNVL+I
Sbjct: 88 GRVIVRGNNVLFI 100
>gi|11498481|ref|NP_069709.1| small nuclear ribonucleoprotein [Archaeoglobus fulgidus DSM 4304]
gi|6094214|sp|O29386.1|RUXX_ARCFU RecName: Full=Putative snRNP Sm-like protein
gi|15826634|pdb|1I5L|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826635|pdb|1I5L|B Chain B, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826636|pdb|1I5L|C Chain C, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826637|pdb|1I5L|D Chain D, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826638|pdb|1I5L|E Chain E, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826639|pdb|1I5L|F Chain F, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826640|pdb|1I5L|G Chain G, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826641|pdb|1I5L|H Chain H, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826642|pdb|1I5L|I Chain I, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826643|pdb|1I5L|J Chain J, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826644|pdb|1I5L|K Chain K, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826645|pdb|1I5L|L Chain L, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826646|pdb|1I5L|M Chain M, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826647|pdb|1I5L|N Chain N, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826691|pdb|1I4K|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826692|pdb|1I4K|B Chain B, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826693|pdb|1I4K|C Chain C, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826694|pdb|1I4K|D Chain D, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826695|pdb|1I4K|E Chain E, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826696|pdb|1I4K|F Chain F, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826697|pdb|1I4K|G Chain G, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826698|pdb|1I4K|H Chain H, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826699|pdb|1I4K|I Chain I, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826700|pdb|1I4K|J Chain J, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826701|pdb|1I4K|K Chain K, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826702|pdb|1I4K|L Chain L, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826703|pdb|1I4K|M Chain M, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826704|pdb|1I4K|N Chain N, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826705|pdb|1I4K|O Chain O, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826706|pdb|1I4K|P Chain P, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826707|pdb|1I4K|Q Chain Q, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826708|pdb|1I4K|R Chain R, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826709|pdb|1I4K|S Chain S, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826710|pdb|1I4K|T Chain T, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826711|pdb|1I4K|U Chain U, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826712|pdb|1I4K|V Chain V, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826713|pdb|1I4K|W Chain W, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826714|pdb|1I4K|X Chain X, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826715|pdb|1I4K|Y Chain Y, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826716|pdb|1I4K|Z Chain Z, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826717|pdb|1I4K|1 Chain 1, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826718|pdb|1I4K|2 Chain 2, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|2649736|gb|AAB90374.1| snRNP, putative [Archaeoglobus fulgidus DSM 4304]
Length = 77
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P D L PV+V+L G ++RG L D +MN+ + EE NG++ K G IRG
Sbjct: 5 PLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRG 64
Query: 75 NNVLYISTSK 84
+ V+++S +
Sbjct: 65 DTVVFVSPAP 74
>gi|238488667|ref|XP_002375571.1| small nuclear ribonucleoprotein SmF, putative [Aspergillus flavus
NRRL3357]
gi|317137842|ref|XP_003190097.1| small nuclear ribonucleoprotein F [Aspergillus oryzae RIB40]
gi|220697959|gb|EED54299.1| small nuclear ribonucleoprotein SmF, putative [Aspergillus flavus
NRRL3357]
Length = 88
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL++ G +V++L G +Y+G L +D YMN+ + TEE+++G+ G IR
Sbjct: 8 PRPFLQTRVGTEMVIRLKWGQTEYKGKLESIDSYMNVLLRDTEEFIDGKNTGTLGLVLIR 67
Query: 74 GNNVLYISTS 83
NN+L++ ++
Sbjct: 68 CNNILWMGSA 77
>gi|121716524|ref|XP_001275833.1| LSM domain protein [Aspergillus clavatus NRRL 1]
gi|119403990|gb|EAW14407.1| LSM domain protein [Aspergillus clavatus NRRL 1]
Length = 88
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL++ G +V++L G +Y+G L +D YMN+ + TEE+++G+ G IR
Sbjct: 8 PRPFLQARVGTELVIRLKWGQTEYKGKLESIDSYMNVLLRDTEEFIDGKNTGTLGLVLIR 67
Query: 74 GNNVLYISTS 83
NN+L++ ++
Sbjct: 68 CNNILWMGSA 77
>gi|46108998|ref|XP_381557.1| hypothetical protein FG01381.1 [Gibberella zeae PH-1]
gi|408391969|gb|EKJ71335.1| hypothetical protein FPSE_08574 [Fusarium pseudograminearum
CS3096]
Length = 89
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P L+ + + V+V+L G +Y+G L +D YMNI + TEEY+ + G IR
Sbjct: 8 PRPMLEELVSKQVLVRLKWGETEYKGTLVSIDSYMNIQLSGTEEYIADKPTGSLGQVLIR 67
Query: 74 GNNVLYI 80
NNVL++
Sbjct: 68 CNNVLWV 74
>gi|254166962|ref|ZP_04873815.1| hypothetical protein ABOONEI_370 [Aciduliprofundum boonei T469]
gi|289597064|ref|YP_003483760.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
gi|197623818|gb|EDY36380.1| hypothetical protein ABOONEI_370 [Aciduliprofundum boonei T469]
gi|289534851|gb|ADD09198.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
Length = 75
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P L +PV+V + +YRG+L D ++N+ ++ EE +NG+ K + +RG
Sbjct: 7 PLHVLHESLNKPVLVAMKGNKEYRGVLDGYDQHLNLVLKNVEEIINGESKGVHNVVIVRG 66
Query: 75 NNVLYISTS 83
+NV+YIS
Sbjct: 67 DNVIYISPP 75
>gi|444717889|gb|ELW58709.1| Small nuclear ribonucleoprotein F [Tupaia chinensis]
Length = 67
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 28 VVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTL 87
+VKL G++Y+G L DGYMN+ + TEE ++G L G+ I NN+ YI +
Sbjct: 1 MVKLKRGMEYKGYLVSADGYMNMQLANTEENIDGALSGHLGEVLITCNNIFYIRGVEEEE 60
Query: 88 ADG 90
DG
Sbjct: 61 KDG 63
>gi|389583811|dbj|GAB66545.1| small nuclear ribonucleoprotein F [Plasmodium cynomolgi strain B]
Length = 57
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 35 VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRT 86
++Y+G L D YMNI + EE+++G+ K G+ F+R NN+LYI K T
Sbjct: 1 MEYKGNLKSFDAYMNIRLANAEEWIHGEYKGTLGEIFLRCNNILYIREDKET 52
>gi|320100411|ref|YP_004176003.1| LSM family small nuclear ribonucleoprotein [Desulfurococcus
mucosus DSM 2162]
gi|319752763|gb|ADV64521.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
mucosus DSM 2162]
Length = 93
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN-GQLKNKYGDAFI 72
+P LKS G+ ++V++ G +Y G L +DG MNI + EY + G+ ++YG I
Sbjct: 12 SPMKVLKSAEGQIILVRIKGGYEYIGTLDLIDGTMNIVLSDCTEYSSEGKPTSRYGRIII 71
Query: 73 RGNNVLYIST 82
RG++V +IST
Sbjct: 72 RGSHVEFIST 81
>gi|403216561|emb|CCK71058.1| hypothetical protein KNAG_0F03940 [Kazachstania naganishii CBS
8797]
Length = 87
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 11 TTKTPADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
T P FL+S+ VVVKL + YRG L D Y N+ + EE + + G+
Sbjct: 5 TPVNPKPFLRSLVNERVVVKLKFNDTTYRGTLLSTDNYFNLQLADAEEIIGSTNRGTVGE 64
Query: 70 AFIRGNNVLYISTSK 84
FIR NNVL+I T +
Sbjct: 65 IFIRCNNVLWIGTDQ 79
>gi|345316457|ref|XP_001515850.2| PREDICTED: acylglycerol kinase, mitochondrial-like [Ornithorhynchus
anatinus]
Length = 668
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/31 (77%), Positives = 26/31 (83%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRG 39
S +TP+DFLK I GRPVVVKLNSGVDYRG
Sbjct: 534 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRG 564
>gi|146323040|ref|XP_755885.2| small nuclear ribonucleoprotein SmF [Aspergillus fumigatus Af293]
gi|129558586|gb|EAL93847.2| small nuclear ribonucleoprotein SmF, putative [Aspergillus
fumigatus Af293]
Length = 88
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL++ G ++++L G +Y+G L +D YMN+ + TEE+++G+ G IR
Sbjct: 8 PRPFLQARVGTELIIRLKWGQTEYKGKLESIDSYMNVLLRDTEEFIDGKNTGTLGLVLIR 67
Query: 74 GNNVLYISTS 83
NN+L++ ++
Sbjct: 68 CNNILWMGSA 77
>gi|401839563|gb|EJT42734.1| SMX3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 77
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FLK + V VKL + +YRG L D Y N+ +++ EE+V G G+ FIR
Sbjct: 6 PKPFLKGLVNHRVGVKLKFNNTEYRGTLVSTDNYFNLQLDEAEEFVGGVSHGILGEIFIR 65
Query: 74 GNNVLYI 80
NNVLY+
Sbjct: 66 CNNVLYV 72
>gi|145251167|ref|XP_001397097.1| small nuclear ribonucleoprotein F [Aspergillus niger CBS 513.88]
gi|134082627|emb|CAK42521.1| unnamed protein product [Aspergillus niger]
Length = 88
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL++ G ++++L G +Y+G L +D YMN+ + TEE+++G+ G IR
Sbjct: 8 PRPFLQARVGTELIIRLKWGQTEYKGKLESIDSYMNVLLRDTEEFIDGKNTGTLGLVLIR 67
Query: 74 GNNVLYISTS 83
NN+L++ ++
Sbjct: 68 CNNILWMGSA 77
>gi|84489967|ref|YP_448199.1| small nuclear ribonucleoprotein [Methanosphaera stadtmanae DSM
3091]
gi|84373286|gb|ABC57556.1| putative snRNP Sm-like protein [Methanosphaera stadtmanae DSM
3091]
Length = 81
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 6 EKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 65
+K + T P D L V++KL G ++RG L D +MN+ + EE +G+
Sbjct: 4 QKNNNNTSRPLDALGQALNSQVLIKLKGGKEFRGALQSFDMHMNLVLNDAEEIKDGESIC 63
Query: 66 KYGDAFIRGNNVLYIS 81
+ G +RG+N++YIS
Sbjct: 64 RLGVVLVRGDNIVYIS 79
>gi|218883408|ref|YP_002427790.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
kamchatkensis 1221n]
gi|218765024|gb|ACL10423.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
kamchatkensis 1221n]
Length = 93
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEY-VNGQLKNKYGDAFI 72
+P LKS G+ V+V++ G++Y G L +D MNI + EY +G+ ++YG I
Sbjct: 12 SPLKVLKSAEGQVVLVRIKGGIEYVGTLDLIDPTMNIVLSDCTEYGGDGRPTSRYGKIII 71
Query: 73 RGNNVLYISTS 83
RG++V +IST+
Sbjct: 72 RGSHVEFISTN 82
>gi|383320750|ref|YP_005381591.1| Small nuclear ribonucleoprotein, LSM family [Methanocella
conradii HZ254]
gi|379322120|gb|AFD01073.1| Small nuclear ribonucleoprotein, LSM family [Methanocella
conradii HZ254]
Length = 72
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
++ P D L PV+V+L G ++RG L D +MN+ +E EE + K G
Sbjct: 2 SQRPLDVLNDALNSPVIVRLKGGREFRGELQGYDMHMNLVLENAEELKENEESRKLGTII 61
Query: 72 IRGNNVLYIS 81
+RG+ V+Y+S
Sbjct: 62 VRGDTVVYVS 71
>gi|389644698|ref|XP_003719981.1| small nuclear ribonucleoprotein F [Magnaporthe oryzae 70-15]
gi|351639750|gb|EHA47614.1| small nuclear ribonucleoprotein F [Magnaporthe oryzae 70-15]
gi|440470659|gb|ELQ39721.1| small nuclear ribonucleoprotein F [Magnaporthe oryzae Y34]
gi|440487924|gb|ELQ67688.1| small nuclear ribonucleoprotein F [Magnaporthe oryzae P131]
Length = 88
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P L+ + + V V+L G +Y+G L +D YMNI + +EY++ +L+ G IR
Sbjct: 8 PRPMLQDLVNKDVYVRLKWGETEYKGRLVSIDSYMNIQLSNAQEYIDQKLEGDLGQILIR 67
Query: 74 GNNVLYISTS 83
NNVL++ ++
Sbjct: 68 CNNVLWVRSA 77
>gi|400598516|gb|EJP66225.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 86
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P L+ + + V V+L G +Y+G L LD YMN+ + T+EY++ + G IR
Sbjct: 8 PRPMLQELVDKTVSVRLKWGETEYKGKLVSLDAYMNLQLANTQEYISDKFTADLGQVLIR 67
Query: 74 GNNVLYI 80
NNVL+I
Sbjct: 68 CNNVLWI 74
>gi|159042090|ref|YP_001541342.1| like-Sm ribonucleoprotein core [Caldivirga maquilingensis IC-167]
gi|157920925|gb|ABW02352.1| Like-Sm ribonucleoprotein core [Caldivirga maquilingensis IC-167]
Length = 79
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%)
Query: 8 GSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKY 67
S K D L S+ G V+VKL G RG L D +MN+ ++ TEE ++ + K
Sbjct: 2 ASRCMKFVQDELSSVVGSTVLVKLRDGTTIRGTLKNYDQHMNLLLDDTEEIIDPKTSIKR 61
Query: 68 GDAFIRGNNVLYIS 81
G IRG+ VL++S
Sbjct: 62 GMVVIRGDTVLFVS 75
>gi|327311719|ref|YP_004338616.1| small nuclear ribonucleoprotein [Thermoproteus uzoniensis 768-20]
gi|326948198|gb|AEA13304.1| small nuclear ribonucleoprotein [Thermoproteus uzoniensis 768-20]
Length = 86
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEY-VNGQLKNKYGDAFI 72
+P L + + VV +L V RGIL+ D MN+ +++ EE NG K KYG I
Sbjct: 12 SPLKVLSKMVNKVVVARLKGDVVVRGILSIYDSCMNLVLDEAEELDKNGATKMKYGRILI 71
Query: 73 RGNNVLYISTSK 84
RG+ ++YIS+ +
Sbjct: 72 RGSQIIYISSEE 83
>gi|294495046|ref|YP_003541539.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
gi|292666045|gb|ADE35894.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
Length = 72
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P D L + V+V+L ++RG L D +MN+ +++ EE G++ K G +RG
Sbjct: 5 PLDILNNALNTAVIVRLKGAREFRGTLQGYDVHMNLVLDEAEEIKEGEIIRKIGSVVVRG 64
Query: 75 NNVLYIS 81
+NV+Y+S
Sbjct: 65 DNVVYVS 71
>gi|385303687|gb|EIF47745.1| small nuclear ribonucleoprotein [Dekkera bruxellensis AWRI1499]
Length = 135
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 14 TPADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQLK--NKYGDA 70
P FL+S+ + V+VKL + ++Y G L +D YMN+ M++ + VNG+ + + GD
Sbjct: 7 NPKPFLQSLLNKQVIVKLKFNSIEYHGKLLSIDNYMNLLMDKDVKEVNGKTREVSPLGDE 66
Query: 71 -FIRGNNVLYI 80
FIR NNVL+I
Sbjct: 67 MFIRCNNVLWI 77
>gi|346324140|gb|EGX93737.1| small nuclear ribonucleoprotein SmF [Cordyceps militaris CM01]
Length = 86
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P L+ + + V V+L G +Y+G L LD YMN+ + T+EY+ + G IR
Sbjct: 8 PRPMLQELVDKTVSVRLKWGETEYKGKLVSLDAYMNLQLANTQEYIADKFTADLGQVLIR 67
Query: 74 GNNVLYI 80
NNVL+I
Sbjct: 68 CNNVLWI 74
>gi|18312096|ref|NP_558763.1| small nuclear ribonucleoprotein (Sm-like) [Pyrobaculum aerophilum
str. IM2]
gi|18159526|gb|AAL62945.1| small nuclear ribonucleoprotein homolog (Sm-like) [Pyrobaculum
aerophilum str. IM2]
Length = 85
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEY-VNGQLKNKYGDAFI 72
+P L + + ++ +L GV +G+L DG MN+ + E +G+ K +YG I
Sbjct: 11 SPIKVLTKMLNKEIIARLKGGVAVKGVLTAYDGCMNLVLNDAAELDKSGEPKTRYGRIVI 70
Query: 73 RGNNVLYISTSKRT 86
RG+ V+Y+STS+ T
Sbjct: 71 RGSQVIYVSTSEVT 84
>gi|147921633|ref|YP_684550.1| small nuclear ribonucleoprotein [Methanocella arvoryzae MRE50]
gi|121685694|sp|Q0W8R9.1|RUXX_UNCMA RecName: Full=Putative snRNP Sm-like protein
gi|110619946|emb|CAJ35224.1| putative small nuclear ribonucleoprotein (snRNP) Sm-like protein
[Methanocella arvoryzae MRE50]
Length = 72
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
++ P D L PV+V+L G ++RG L D +MN+ ++ EE + K G
Sbjct: 2 SQRPLDVLNEALNSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEELKENEASRKLGTII 61
Query: 72 IRGNNVLYIS 81
+RG+ V+Y+S
Sbjct: 62 VRGDTVVYVS 71
>gi|50308333|ref|XP_454168.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643303|emb|CAG99255.1| KLLA0E04929p [Kluyveromyces lactis]
Length = 112
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL + + V+V L + + Y+G L +D Y N+ + EE +N K GD FIR
Sbjct: 11 PKPFLHQLIDKDVLVTLKFNKIQYKGRLVSVDTYFNLQLTDAEEIINDVSSGKVGDIFIR 70
Query: 74 GNNVLYI 80
NNVLY+
Sbjct: 71 CNNVLYV 77
>gi|346976539|gb|EGY19991.1| LSM domain-containing protein [Verticillium dahliae VdLs.17]
Length = 79
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 18 FLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNN 76
L+ + + +VV+L G +Y+G L +D YMNI + EEY++ ++ G IR NN
Sbjct: 1 MLQDLVNKDIVVRLKWGDTEYKGRLVSIDSYMNIQLSGAEEYIDQKMTGALGQVLIRCNN 60
Query: 77 VLYISTS 83
VL+I +
Sbjct: 61 VLWIRAA 67
>gi|406861634|gb|EKD14688.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 80
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 18 FLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNN 76
L+++ VV++L G +Y+G L +D YMNI + EE+++ ++ + G IR NN
Sbjct: 1 MLQNLVNEEVVIRLKWGQTEYKGRLVSIDSYMNIQLSGAEEWIDQEMTSVLGQVLIRCNN 60
Query: 77 VLYISTSKRTLADG 90
VL+I + + +G
Sbjct: 61 VLWIQGANQNNGNG 74
>gi|215693002|dbj|BAG88422.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 59
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 35 VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 80
++Y+G L +D YMN+ + TEEY++GQ G+ IR NNVLY+
Sbjct: 1 MEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILIRCNNVLYL 46
>gi|363750217|ref|XP_003645326.1| hypothetical protein Ecym_2813 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888959|gb|AET38509.1| Hypothetical protein Ecym_2813 [Eremothecium cymbalariae
DBVPG#7215]
Length = 87
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 11 TTKTPADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
T P FL+ + + +VV L + Y+G + D Y NI + + EE+V K GD
Sbjct: 5 TPTNPKPFLRQLVDKYIVVTLKFNNTKYKGKMVSTDNYFNIQLTEAEEFVGDVSKGVVGD 64
Query: 70 AFIRGNNVLYI 80
FIR NNVL+I
Sbjct: 65 IFIRCNNVLWI 75
>gi|282164954|ref|YP_003357339.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
gi|282157268|dbj|BAI62356.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
Length = 72
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
++ P D L PV+V+L G ++RG L D +MN+ ++ EE + K G
Sbjct: 2 SQRPLDVLNDALNSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEELKENEESKKLGTII 61
Query: 72 IRGNNVLYIS 81
+RG+ V+Y+S
Sbjct: 62 VRGDTVVYVS 71
>gi|448515600|ref|XP_003867370.1| Smx3 protein [Candida orthopsilosis Co 90-125]
gi|380351709|emb|CCG21932.1| Smx3 protein [Candida orthopsilosis]
Length = 130
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 15 PADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYV----NGQLKNKYGD 69
P F+KS+ G+ VVV+L + +YRG L D Y+N+ ++ T E + + + G
Sbjct: 9 PKPFMKSLIGKQVVVRLKWNKTEYRGQLISTDNYLNLQLDNTFEIIYDNEDKPREEAIGS 68
Query: 70 AFIRGNNVLYISTSKRTLADG 90
FIR NNVL+I K A+
Sbjct: 69 IFIRCNNVLFIREHKDQEAES 89
>gi|313244351|emb|CBY15159.1| unnamed protein product [Oikopleura dioica]
Length = 61
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 35 VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 80
++Y+G L +DGYMN+ + +EEY++G L G+ IR NNVLYI
Sbjct: 1 MEYKGYLMAVDGYMNLQLGNSEEYIDGALAGHLGEILIRCNNVLYI 46
>gi|126466194|ref|YP_001041303.1| LSM family small nuclear ribonucleoprotein [Staphylothermus
marinus F1]
gi|126015017|gb|ABN70395.1| Small nuclear ribonucleoprotein, LSM family [Staphylothermus
marinus F1]
Length = 91
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEY-VNGQLKNKYGDA 70
T TP +LKS + V+VK+ G +Y G L +D MN+ + +EY +G+ +YG
Sbjct: 8 TATPLKYLKSAVNQIVLVKIKDGHEYIGTLNMVDHTMNVVLSNCQEYGDDGKPIARYGKV 67
Query: 71 FIRGNNVLYIS 81
IRG+++++IS
Sbjct: 68 LIRGSHIVFIS 78
>gi|145592526|ref|YP_001154528.1| like-Sm ribonucleoprotein, core [Pyrobaculum arsenaticum DSM
13514]
gi|379005495|ref|YP_005261167.1| Small nuclear ribonucleoprotein-like (snRNP) [Pyrobaculum
oguniense TE7]
gi|145284294|gb|ABP51876.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
arsenaticum DSM 13514]
gi|375160948|gb|AFA40560.1| Small nuclear ribonucleoprotein-like (snRNP) [Pyrobaculum
oguniense TE7]
Length = 86
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN-GQLKNKYGDAFI 72
+P L + + +V KL GV +G+L DG MN+ ++ E N G+ K +YG +
Sbjct: 12 SPIKVLTKMLNKEIVAKLKGGVAIKGVLTAYDGCMNLVLDSAAELDNSGEPKTRYGRIVV 71
Query: 73 RGNNVLYISTSKRT 86
RG+ V+Y+S + T
Sbjct: 72 RGSQVIYVSALEVT 85
>gi|45190332|ref|NP_984586.1| AEL274Cp [Ashbya gossypii ATCC 10895]
gi|44983228|gb|AAS52410.1| AEL274Cp [Ashbya gossypii ATCC 10895]
gi|374107801|gb|AEY96708.1| FAEL274Cp [Ashbya gossypii FDAG1]
Length = 86
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL+ + + +VV L + YRG L D Y NI + + EE++ K GD FIR
Sbjct: 9 PKPFLRQLVDQYIVVTLKFNNTRYRGKLMSTDNYFNIRLTEAEEFIGDVSKGMVGDLFIR 68
Query: 74 GNNVLYI 80
NNVL+I
Sbjct: 69 CNNVLWI 75
>gi|164657710|ref|XP_001729981.1| hypothetical protein MGL_2967 [Malassezia globosa CBS 7966]
gi|159103875|gb|EDP42767.1| hypothetical protein MGL_2967 [Malassezia globosa CBS 7966]
Length = 94
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 14/80 (17%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNI--------------AMEQTEEYVN 60
P FL+ G+ V+++L G++Y+G L D YMN + TEE +
Sbjct: 8 PKPFLQQQIGKKVLIRLKWGLEYKGFLVSTDNYMNFQVRWMGRRLSCSYTQLANTEEIQD 67
Query: 61 GQLKNKYGDAFIRGNNVLYI 80
G+ G+ FIR NNVLY+
Sbjct: 68 GKSNGTLGEVFIRCNNVLYL 87
>gi|385805333|ref|YP_005841731.1| Like-Sm ribonucleoprotein, core [Fervidicoccus fontis Kam940]
gi|383795196|gb|AFH42279.1| Like-Sm ribonucleoprotein, core [Fervidicoccus fontis Kam940]
Length = 89
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
M G S+ T+ P +L+ +G V+VKL G +Y G L D MN+ ++ E
Sbjct: 1 MYKGANLMSSKTQLPLKYLQDAKGNNVLVKLKDGGEYIGELDFSDSTMNVILKNCTEVKE 60
Query: 61 --GQLKNKYGDAFIRGNNVLYIS 81
G+ K KYG IRG+ +L+IS
Sbjct: 61 RTGEPKAKYGTILIRGSQILFIS 83
>gi|398392379|ref|XP_003849649.1| hypothetical protein MYCGRDRAFT_75738 [Zymoseptoria tritici
IPO323]
gi|339469526|gb|EGP84625.1| hypothetical protein MYCGRDRAFT_75738 [Zymoseptoria tritici
IPO323]
Length = 89
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P L+++ + V++++ G +Y G L +D YMN+ + +E+ +G + G IR
Sbjct: 8 PRPMLQALVNQDVLIRIKWGQEYTGRLVSVDSYMNVQLGNAKEWKDGDEQGDLGQVLIRC 67
Query: 75 NNVLYIS 81
NNVL+IS
Sbjct: 68 NNVLWIS 74
>gi|296241945|ref|YP_003649432.1| LSM family small nuclear ribonucleoprotein [Thermosphaera
aggregans DSM 11486]
gi|296094529|gb|ADG90480.1| Small nuclear ribonucleoprotein, LSM family [Thermosphaera
aggregans DSM 11486]
Length = 91
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV-NGQLKNKYGDAF 71
++P LKS G+ V+VK+ G +Y G L +D MN+ M EY +G+ +YG
Sbjct: 9 QSPFKILKSSEGQIVLVKIKGGYEYVGNLDLIDNTMNVVMSNCTEYSKDGKPVARYGKLI 68
Query: 72 IRGNNVLYISTS 83
IRG+++ YIS +
Sbjct: 69 IRGSHIQYISVN 80
>gi|124026985|ref|YP_001012305.1| putative snRNP Sm-like protein [Hyperthermus butylicus DSM 5456]
gi|123977679|gb|ABM79960.1| putative snRNP Sm-like protein [Hyperthermus butylicus DSM 5456]
Length = 93
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQL--KNKY 67
A +P L+ GR + VKL G +Y G L D MN+ +++ E G + K KY
Sbjct: 6 AKPVSPLRVLREAVGRVIFVKLKDGSEYVGKLVATDPTMNLVLDECVELKPGTMERKVKY 65
Query: 68 GDAFIRGNNVLYISTSKRTLADGA 91
G IRG++V+Y+S + G+
Sbjct: 66 GRVLIRGSHVVYVSVDFEIVTGGS 89
>gi|124484977|ref|YP_001029593.1| hypothetical protein Mlab_0149 [Methanocorpusculum labreanum Z]
gi|124362518|gb|ABN06326.1| Like-Sm ribonucleoprotein, core [Methanocorpusculum labreanum Z]
Length = 75
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 12 TKTPADFLKSIRGR-PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEY-VNGQLKNKYGD 69
TK P + L + R PV++ L G + RG+L D +MN+ +++ EE NG + G
Sbjct: 2 TKRPLEILDQVLNRQPVIISLKGGREIRGVLQGYDVHMNLVLDKAEEEGENGTV--SLGT 59
Query: 70 AFIRGNNVLYISTS 83
+RG+NV+YIS S
Sbjct: 60 LIVRGDNVIYISPS 73
>gi|325959826|ref|YP_004291292.1| snRNP Sm-like protein [Methanobacterium sp. AL-21]
gi|325331258|gb|ADZ10320.1| snRNP Sm-like protein [Methanobacterium sp. AL-21]
Length = 80
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
T P D L V+++L G ++RG+L D +MN+ + + EE + + G
Sbjct: 9 TSRPLDVLGKSLNSQVLIELKGGREFRGLLKSFDMHMNLVLNEAEELDGLETAKRLGIVL 68
Query: 72 IRGNNVLYIS 81
IRG+N++YIS
Sbjct: 69 IRGDNIVYIS 78
>gi|67901238|ref|XP_680875.1| hypothetical protein AN7606.2 [Aspergillus nidulans FGSC A4]
gi|40742996|gb|EAA62186.1| hypothetical protein AN7606.2 [Aspergillus nidulans FGSC A4]
Length = 873
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 24 GRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIST 82
G V+V+L G +Y+G L +D YMN+ + TEE+++G+ G IR NN+L++ +
Sbjct: 802 GTEVIVRLKWGQTEYKGRLESIDSYMNVLLRDTEEFIDGKPTGTLGLVLIRCNNILWMGS 861
Query: 83 SK 84
++
Sbjct: 862 AE 863
>gi|118345766|ref|XP_976713.1| Sm protein [Tetrahymena thermophila]
gi|89288130|gb|EAR86118.1| Sm protein [Tetrahymena thermophila SB210]
Length = 845
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 12/78 (15%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNI------------AMEQTEEYVNGQ 62
P FL+ + G+ +VVKL G + +G L D YMN+ + EE+V G+
Sbjct: 762 PKPFLEDLLGKQIVVKLKWGWELKGTLLSTDLYMNLHQSHQFNFQNSTKLLNAEEWVKGE 821
Query: 63 LKNKYGDAFIRGNNVLYI 80
K G+ IR NNVLYI
Sbjct: 822 NKGTLGEILIRCNNVLYI 839
>gi|67624211|ref|XP_668388.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54659578|gb|EAL38148.1| hypothetical protein Chro.10304 [Cryptosporidium hominis]
Length = 67
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 37 YRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS---TSKRTLAD 89
Y+G L D YMNI + EE+++ K G FIR NNVLYIS SK T D
Sbjct: 3 YKGTLVSFDEYMNILLNDCEEWIDNTKKGTLGKVFIRCNNVLYISRAEESKETKTD 58
>gi|337284247|ref|YP_004623721.1| small nuclear ribonucleoprotein [Pyrococcus yayanosii CH1]
gi|334900181|gb|AEH24449.1| small nuclear ribonucleoprotein [Pyrococcus yayanosii CH1]
Length = 82
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%)
Query: 8 GSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKY 67
G + P D + + V+V L G ++RG L D ++N+ + E +G++ KY
Sbjct: 6 GRRMAERPLDVIHRSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLADAEMIQDGEVVKKY 65
Query: 68 GDAFIRGNNVLYISTSK 84
G IRG+NVL IS ++
Sbjct: 66 GKIVIRGDNVLAISPTE 82
>gi|402084326|gb|EJT79344.1| small nuclear ribonucleoprotein F [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 85
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKY 67
S P L+ + + V V+L G +Y+G L +D YMNI + +EY++ +L
Sbjct: 2 SFVPINPRPMLQDLVNKDVYVRLKWGETEYKGRLVSIDSYMNIQLSGAQEYIDQKLAGDL 61
Query: 68 GDAFIRGNNVLYI 80
G IR NNVL++
Sbjct: 62 GQILIRCNNVLWV 74
>gi|237842601|ref|XP_002370598.1| U6 snRNA associated Sm-like protein LSm4, putative [Toxoplasma
gondii ME49]
gi|211968262|gb|EEB03458.1| U6 snRNA associated Sm-like protein LSm4, putative [Toxoplasma
gondii ME49]
gi|221502719|gb|EEE28439.1| small nuclear ribonucleoprotein sm, putative [Toxoplasma gondii
VEG]
Length = 214
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTE-EYVNGQLKNKYGDAFIR 73
P L++ + RP++V+L SG Y G+LA DG+MN+ ++ + +G+ K + +IR
Sbjct: 4 PLTLLRAAQNRPMMVELKSGETYSGLLASCDGFMNLHLKDSVCTSKDGERFWKLSECYIR 63
Query: 74 GNNVLYISTSKRTL 87
GN V YI L
Sbjct: 64 GNMVKYIRLQDEVL 77
>gi|320582096|gb|EFW96314.1| Core Sm protein Sm F [Ogataea parapolymorpha DL-1]
Length = 87
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 15 PADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVN--GQLKNKYGDA- 70
P +L+S+ G+PVV+KL + ++Y G L +D YMN+ +++ + ++ + + GD
Sbjct: 8 PKPYLQSLVGKPVVIKLKFNNIEYHGKLLSIDNYMNLLLDKDVKEIDTAAETSTELGDEL 67
Query: 71 FIRGNNVLYI 80
F+R NNVL++
Sbjct: 68 FVRCNNVLWV 77
>gi|401413718|ref|XP_003886306.1| hypothetical protein NCLIV_067060 [Neospora caninum Liverpool]
gi|325120726|emb|CBZ56281.1| hypothetical protein NCLIV_067060 [Neospora caninum Liverpool]
Length = 98
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTE-EYVNGQLKNKYGDAFIR 73
P L++ + RP++V+L SG Y G+LA DG+MN+ ++ + +G+ K + +IR
Sbjct: 4 PLTLLRAAQNRPMMVELKSGETYSGLLANCDGFMNLHLKDSVCTSKDGERFWKLTECYIR 63
Query: 74 GNNVLYISTSKRTL 87
GN V YI + L
Sbjct: 64 GNMVKYIRLQEEVL 77
>gi|126644023|ref|XP_001388172.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|126117249|gb|EAZ51349.1| hypothetical protein cgd1_2690 [Cryptosporidium parvum Iowa II]
Length = 67
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 37 YRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRT 86
Y+G L D YMNI + EE+++ K G FIR NNVLYIS ++ +
Sbjct: 3 YKGTLVSFDEYMNILLNDCEEWIDNTKKGTLGKVFIRCNNVLYISRAEES 52
>gi|70606592|ref|YP_255462.1| Sm-like protein [Sulfolobus acidocaldarius DSM 639]
gi|449066813|ref|YP_007433895.1| Sm-like protein [Sulfolobus acidocaldarius N8]
gi|449069085|ref|YP_007436166.1| Sm-like protein [Sulfolobus acidocaldarius Ron12/I]
gi|68567240|gb|AAY80169.1| Sm-like protein [Sulfolobus acidocaldarius DSM 639]
gi|449035321|gb|AGE70747.1| Sm-like protein [Sulfolobus acidocaldarius N8]
gi|449037593|gb|AGE73018.1| Sm-like protein [Sulfolobus acidocaldarius Ron12/I]
Length = 87
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN--K 66
A + P LK+ + V+VKL +G +Y G L DG MN+ ++ EY G K
Sbjct: 2 QAKIENPLKSLKTALNKIVLVKLKNGEEYVGRLEQSDGTMNLVLKDCTEYREGTSDPVAK 61
Query: 67 YGDAFIRGNNVLYIS 81
YG IRG+N+L+IS
Sbjct: 62 YGRVLIRGSNILFIS 76
>gi|126137233|ref|XP_001385140.1| hypothetical protein PICST_46368 [Scheffersomyces stipitis CBS
6054]
gi|126092362|gb|ABN67111.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 78
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 15 PADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYV-NGQLKNK--YGDA 70
P FLK++ + V+V+L + +Y+G L +D YMN ++ T E + +G+ K + G+
Sbjct: 6 PKPFLKTLINKQVIVRLKWNKTEYKGTLISIDNYMNFQLDNTYEVIYDGESKKQELIGEI 65
Query: 71 FIRGNNVLYI 80
FIR NNVL+I
Sbjct: 66 FIRCNNVLFI 75
>gi|332157748|ref|YP_004423027.1| small nuclear ribonucleoprotein [Pyrococcus sp. NA2]
gi|331033211|gb|AEC51023.1| small nuclear ribonucleoprotein [Pyrococcus sp. NA2]
Length = 75
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 11 TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
+ P D + + V+V L G ++RG L D ++N+ + E +G++ KYG
Sbjct: 1 MAERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKKYGKI 60
Query: 71 FIRGNNVLYISTSK 84
IRG+NVL IS S+
Sbjct: 61 VIRGDNVLAISPSE 74
>gi|242796981|ref|XP_002482917.1| small nuclear ribonucleoprotein SmF, putative [Talaromyces
stipitatus ATCC 10500]
gi|218719505|gb|EED18925.1| small nuclear ribonucleoprotein SmF, putative [Talaromyces
stipitatus ATCC 10500]
Length = 357
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 24 GRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIST 82
G +V++L G +YRG L +D YMN+ + TEEY++G+ G IR NN+ +++
Sbjct: 286 GTELVIRLKWGQTEYRGTLESIDSYMNVLLRDTEEYIDGKNTGSLGLVLIRCNNIFSMAS 345
Query: 83 SK 84
++
Sbjct: 346 AE 347
>gi|332796288|ref|YP_004457788.1| Sm1 protein [Acidianus hospitalis W1]
gi|332694023|gb|AEE93490.1| archaeal Sm1 protein [Acidianus hospitalis W1]
Length = 87
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN--K 66
A + P +KS + V+VKL G +Y G L DG MN+ + E G + K
Sbjct: 2 QAKVENPLKNIKSAVNKIVLVKLKDGSEYIGKLEQTDGTMNLVLRDCTELREGTAEPVAK 61
Query: 67 YGDAFIRGNNVLYISTSKRTLAD 89
YG IRG+NVL+IS T+ +
Sbjct: 62 YGRVLIRGSNVLFISIDYETIMN 84
>gi|255552678|ref|XP_002517382.1| small nuclear ribonucleoprotein f, putative [Ricinus communis]
gi|223543393|gb|EEF44924.1| small nuclear ribonucleoprotein f, putative [Ricinus communis]
Length = 62
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 38 RGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 80
+G LA +D YMN+ + TEEY++GQ G+ IR NNVLY+
Sbjct: 5 QGFLASVDSYMNLQLGNTEEYIDGQFTGNLGEILIRCNNVLYL 47
>gi|28948591|pdb|1M8V|A Chain A, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948592|pdb|1M8V|B Chain B, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948593|pdb|1M8V|C Chain C, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948594|pdb|1M8V|D Chain D, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948595|pdb|1M8V|E Chain E, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948596|pdb|1M8V|F Chain F, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948597|pdb|1M8V|G Chain G, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948598|pdb|1M8V|H Chain H, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948599|pdb|1M8V|I Chain I, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948600|pdb|1M8V|J Chain J, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948601|pdb|1M8V|K Chain K, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948602|pdb|1M8V|L Chain L, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948603|pdb|1M8V|M Chain M, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948604|pdb|1M8V|N Chain N, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
Length = 77
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
A + P D + + V+V L G ++RG L D ++N+ + E +G++ +YG
Sbjct: 2 AMAERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGK 61
Query: 70 AFIRGNNVLYISTSK 84
IRG+NVL IS ++
Sbjct: 62 IVIRGDNVLAISPTE 76
>gi|352683089|ref|YP_004893613.1| putative snRNP Sm-like protein [Thermoproteus tenax Kra 1]
gi|350275888|emb|CCC82535.1| putative snRNP Sm-like protein [Thermoproteus tenax Kra 1]
Length = 79
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 24 GRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTS 83
G+ V+VKL G + RGIL D ++N+ +E EE V+ + K G +RG NVL++S +
Sbjct: 21 GKRVLVKLRDGYEIRGILKSFDQHVNLLLEDAEEVVDNNI-FKRGTMVVRGENVLFVSPT 79
>gi|305663921|ref|YP_003860209.1| Sm ribonucleoprotein-like protein [Ignisphaera aggregans DSM
17230]
gi|304378490|gb|ADM28329.1| Like-Sm ribonucleoprotein core [Ignisphaera aggregans DSM 17230]
Length = 94
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
MST +K S T P L+ + ++VK+ G +Y G L D MN+ +E E+ +
Sbjct: 1 MSTNQQKPSIT---PMRILRGSMNKSILVKVKEGSEYIGRLVMTDATMNVVLEDATEFSD 57
Query: 61 G--QLKNKYGDAFIRGNNVLYI 80
G + KYG IRG+ +L+I
Sbjct: 58 GGKDVVAKYGRILIRGSQILFI 79
>gi|354547239|emb|CCE43973.1| hypothetical protein CPAR2_501980 [Candida parapsilosis]
Length = 132
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 15 PADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYV----NGQLKNKYGD 69
P F+KS+ G+ VVV+L + +YRG L D Y+N+ ++ T E + + + + G
Sbjct: 9 PKPFIKSLIGQEVVVRLKWNKTEYRGQLMSTDNYLNLQLDNTFEIIYDSEDKFREEEIGS 68
Query: 70 AFIRGNNVLYISTSK 84
FIR NNVL+I K
Sbjct: 69 IFIRCNNVLFIREYK 83
>gi|18312179|ref|NP_558846.1| small nuclear ribonucleoprotein (Sm-like) [Pyrobaculum aerophilum
str. IM2]
gi|18159615|gb|AAL63028.1| small nuclear ribonucleoprotein homolog (Sm-like) [Pyrobaculum
aerophilum str. IM2]
Length = 80
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 24 GRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 81
G+ V+VKL + RGIL D ++N+ +E EE ++G + K G +RG NVL+IS
Sbjct: 21 GKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEIIDGNVY-KRGTMVVRGENVLFIS 77
>gi|315425372|dbj|BAJ47038.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315426552|dbj|BAJ48182.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315426610|dbj|BAJ48238.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|343485302|dbj|BAJ50956.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
Length = 74
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 24 GRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 81
G V+V+L +G RG+L D +MNI +E T+E ++ +NK G +RG++++ IS
Sbjct: 15 GSTVLVRLRNGKVLRGLLKGYDQHMNIVLEDTDELIDENTQNKLGTIVVRGDSIVMIS 72
>gi|15897150|ref|NP_341755.1| small nuclear riboprotein (snRNP-1) [Sulfolobus solfataricus P2]
gi|227828196|ref|YP_002829976.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.14.25]
gi|227830955|ref|YP_002832735.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
L.S.2.15]
gi|229579833|ref|YP_002838232.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.G.57.14]
gi|229581507|ref|YP_002839906.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.N.15.51]
gi|229585425|ref|YP_002843927.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.27]
gi|238620387|ref|YP_002915213.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.4]
gi|284174395|ref|ZP_06388364.1| Like-Sm ribonucleoprotein core [Sulfolobus solfataricus 98/2]
gi|284998443|ref|YP_003420211.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|384433662|ref|YP_005643020.1| Sm ribonucleoprotein-like protein [Sulfolobus solfataricus 98/2]
gi|385773873|ref|YP_005646440.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus HVE10/4]
gi|385776515|ref|YP_005649083.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus REY15A]
gi|13813335|gb|AAK40545.1| Small nuclear riboprotein protein (snRNP-1) [Sulfolobus
solfataricus P2]
gi|227457403|gb|ACP36090.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus L.S.2.15]
gi|227459992|gb|ACP38678.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.14.25]
gi|228010548|gb|ACP46310.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.G.57.14]
gi|228012223|gb|ACP47984.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.N.15.51]
gi|228020475|gb|ACP55882.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.27]
gi|238381457|gb|ACR42545.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.4]
gi|261601816|gb|ACX91419.1| Like-Sm ribonucleoprotein core [Sulfolobus solfataricus 98/2]
gi|284446339|gb|ADB87841.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|323475263|gb|ADX85869.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus REY15A]
gi|323477988|gb|ADX83226.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus HVE10/4]
Length = 87
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNG--QLKNK 66
A + P L++ R V+VKL G +Y G L DG MN+ + E G + K
Sbjct: 2 QAKVENPLKSLRTAINRIVLVKLKDGSEYIGKLEQTDGTMNLVLRDCTEIREGTSEPVAK 61
Query: 67 YGDAFIRGNNVLYISTSKRTLADG 90
YG IRG+N+L+IS T+ +
Sbjct: 62 YGRVLIRGSNILFISVDYETVMNS 85
>gi|14277786|pdb|1I8F|A Chain A, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277787|pdb|1I8F|B Chain B, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277788|pdb|1I8F|C Chain C, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277789|pdb|1I8F|D Chain D, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277790|pdb|1I8F|E Chain E, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277791|pdb|1I8F|F Chain F, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|14277792|pdb|1I8F|G Chain G, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
gi|29726402|pdb|1LNX|A Chain A, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726403|pdb|1LNX|B Chain B, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726404|pdb|1LNX|C Chain C, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726405|pdb|1LNX|D Chain D, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726406|pdb|1LNX|E Chain E, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726407|pdb|1LNX|F Chain F, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
gi|29726408|pdb|1LNX|G Chain G, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
Length = 81
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 24 GRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 81
G+ V+VKL + RGIL D ++N+ +E EE ++G + K G +RG NVL+IS
Sbjct: 21 GKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEIIDGNVY-KRGTMVVRGENVLFIS 77
>gi|344233338|gb|EGV65211.1| small nuclear ribonucleo protein SmF [Candida tenuis ATCC 10573]
gi|344233339|gb|EGV65212.1| hypothetical protein CANTEDRAFT_134081 [Candida tenuis ATCC
10573]
Length = 104
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 15 PADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEE--YVNG-QLKNKYGDA 70
P FLK++ + V+V+L + +Y G L +D YMN ++ E YV+G + G+
Sbjct: 11 PKPFLKTLLNKRVIVRLKWNKTEYTGNLVSVDNYMNFQLDDASETAYVDGKKTAETVGEV 70
Query: 71 FIRGNNVLYISTSKRT 86
FIR NNVL++ + T
Sbjct: 71 FIRCNNVLFVREATDT 86
>gi|18977914|ref|NP_579271.1| small nuclear ribonucleoprotein [Pyrococcus furiosus DSM 3638]
gi|397652035|ref|YP_006492616.1| small nuclear ribonucleoprotein [Pyrococcus furiosus COM1]
gi|23822154|sp|Q8U0P4.1|RUXX_PYRFU RecName: Full=Putative snRNP Sm-like protein
gi|18893680|gb|AAL81666.1| small nuclear ribonucleoprotein, putative [Pyrococcus furiosus
DSM 3638]
gi|393189626|gb|AFN04324.1| small nuclear ribonucleoprotein [Pyrococcus furiosus COM1]
Length = 76
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P D + + V+V L G ++RG L D ++N+ + E +G++ KYG IRG
Sbjct: 5 PLDVIHKSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLANAELLQDGEVVKKYGKIVIRG 64
Query: 75 NNVLYISTSKR 85
+NVL IS ++
Sbjct: 65 DNVLAISPTEE 75
>gi|389852826|ref|YP_006355060.1| nuclear ribonucleoprotein [Pyrococcus sp. ST04]
gi|388250132|gb|AFK22985.1| nuclear ribonucleoprotein [Pyrococcus sp. ST04]
Length = 76
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P D + + V+V L G ++RG L D ++N+ + E +G++ KYG IRG
Sbjct: 5 PLDVIHKSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKKYGKIVIRG 64
Query: 75 NNVLYISTSK 84
+NVL IS ++
Sbjct: 65 DNVLAISPTE 74
>gi|145590308|ref|YP_001152310.1| like-Sm ribonucleoprotein, core [Pyrobaculum arsenaticum DSM
13514]
gi|379005411|ref|YP_005261083.1| Small nuclear ribonucleoprotein-like (snRNP) [Pyrobaculum
oguniense TE7]
gi|145282076|gb|ABP49658.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
arsenaticum DSM 13514]
gi|375160864|gb|AFA40476.1| Small nuclear ribonucleoprotein-like (snRNP) [Pyrobaculum
oguniense TE7]
Length = 80
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 24 GRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 81
G+ V+VKL + RG+L D ++N+ +E EE ++G + K G +RG NVL+IS
Sbjct: 21 GKQVLVKLRDSHEIRGVLRSFDQHVNLLLEDAEEIIDGNV-FKRGTIVVRGENVLFIS 77
>gi|14591301|ref|NP_143379.1| small nuclear ribonucleoprotein [Pyrococcus horikoshii OT3]
gi|6094216|sp|O74016.1|RUXX_PYRHO RecName: Full=Putative snRNP Sm-like protein
gi|3257945|dbj|BAA30628.1| 75aa long hypothetical small nucleoprotein [Pyrococcus horikoshii
OT3]
Length = 75
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
+ P D + + V+V L G ++RG L D ++N+ + E +G++ KYG
Sbjct: 2 AERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMVQDGEVVKKYGKIV 61
Query: 72 IRGNNVLYISTSK 84
IRG+NVL IS ++
Sbjct: 62 IRGDNVLAISPTE 74
>gi|401826016|ref|XP_003887102.1| Sm-like ribonucleoprotein [Encephalitozoon hellem ATCC 50504]
gi|392998260|gb|AFM98121.1| Sm-like ribonucleoprotein [Encephalitozoon hellem ATCC 50504]
Length = 81
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+ P FL+ ++G+ VVV L G Y G+L D Y NI +++ E +G+ + G+ I
Sbjct: 12 ENPKQFLQRMKGKSVVVSLKWGQSYEGVLVMSDNYFNILLDKCIEK-DGEASMEVGEVSI 70
Query: 73 RGNNVLYIS 81
R NN+ IS
Sbjct: 71 RCNNIKSIS 79
>gi|327311460|ref|YP_004338357.1| Small nuclear ribonucleoprotein (snRNP) --like protein
[Thermoproteus uzoniensis 768-20]
gi|326947939|gb|AEA13045.1| Small nuclear ribonucleoprotein (snRNP) - like protein
[Thermoproteus uzoniensis 768-20]
Length = 75
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 24 GRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTS 83
G+ V+VKL G + RGIL D ++N+ +E EE ++ + K G +RG NVL++S +
Sbjct: 17 GKRVLVKLRDGYEIRGILKSFDQHVNLLLEDAEEVIDNVIL-KRGTMVVRGENVLFVSPT 75
>gi|242398502|ref|YP_002993926.1| snRNP Sm-like protein [Thermococcus sibiricus MM 739]
gi|259495716|sp|C6A1T2.1|RUXX_THESM RecName: Full=Putative snRNP Sm-like protein
gi|242264895|gb|ACS89577.1| Putative snRNP Sm-like protein [Thermococcus sibiricus MM 739]
Length = 76
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
+ P D + + V+V L G +YRG L D ++N+ + + NG+ K YG
Sbjct: 2 AERPLDVIHKSLDKEVLVILKRGAEYRGKLIGYDIHLNVVLADAQLIENGEPKKSYGKIV 61
Query: 72 IRGNNVLYIS 81
IRG+NVL IS
Sbjct: 62 IRGDNVLAIS 71
>gi|156936952|ref|YP_001434748.1| like-Sm ribonucleoprotein, core [Ignicoccus hospitalis KIN4/I]
gi|156565936|gb|ABU81341.1| Like-Sm ribonucleoprotein, core [Ignicoccus hospitalis KIN4/I]
Length = 91
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV- 59
M+ G EKG + P +L++ V+V+L G +Y G L D MN+ ++ E
Sbjct: 1 MARGQEKGKLNLENPLKYLRAAVDNVVLVRLKDGNEYVGKLVFTDNTMNLILDDCTELSP 60
Query: 60 -NGQLKNKYGDAFIRGNNVLYIS 81
G+ KYG IRG+ VL+IS
Sbjct: 61 ETGEPVAKYGRIMIRGSYVLFIS 83
>gi|268323608|emb|CBH37196.1| putative snRNP Sm-like protein [uncultured archaeon]
Length = 102
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 10 ATTKTPADFL-KSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV-NGQLKNKY 67
T P D L KS+R PV+V++ ++RG L D +MN+ + EE + +K
Sbjct: 5 VTKLKPLDVLNKSLRS-PVIVRIRGAREFRGTLEGYDLHMNLVLSDAEELDGDAIVKELM 63
Query: 68 GDAFIRGNNVLYISTS 83
G+ +RG+NV+YIS +
Sbjct: 64 GEILVRGDNVVYISPT 79
>gi|294932805|ref|XP_002780450.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
gi|239890384|gb|EER12245.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
Length = 126
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G+P++V+L +G Y G+LA D +MN+ + + +G K +A+IR
Sbjct: 4 PMSLLKTAQGQPIMVELKNGEAYSGVLANCDSWMNLHIRDAVLTSKDGDRFWKLAEAYIR 63
Query: 74 GNNVLYI 80
GN+V Y+
Sbjct: 64 GNHVKYL 70
>gi|119872589|ref|YP_930596.1| like-Sm ribonucleoprotein, core [Pyrobaculum islandicum DSM 4184]
gi|119673997|gb|ABL88253.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
islandicum DSM 4184]
Length = 80
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
L+ G+ V+VKL + RGIL D ++N+ ++ EE ++G + K G IRG NVL
Sbjct: 16 LQDAIGKQVLVKLRDSHEIRGILRSFDQHVNLLLDDAEEIIDGNVY-KRGTIVIRGENVL 74
Query: 79 YIS 81
+IS
Sbjct: 75 FIS 77
>gi|159041439|ref|YP_001540691.1| like-Sm ribonucleoprotein core [Caldivirga maquilingensis IC-167]
gi|157920274|gb|ABW01701.1| Like-Sm ribonucleoprotein core [Caldivirga maquilingensis IC-167]
Length = 86
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 6 EKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEY--VNGQL 63
EK + P L + + VVVKL +G G L +D MNI ++ EE Q+
Sbjct: 3 EKTEVNSVQPLRALGMMVNKSVVVKLKAGRVLSGTLRFIDQCMNIVLDDAEELDTRTNQV 62
Query: 64 KNKYGDAFIRGNNVLYIST 82
+YG IRGN VLY+S
Sbjct: 63 IVRYGKVLIRGNQVLYVSV 81
>gi|126460744|ref|YP_001057022.1| LSM family small nuclear ribonucleoprotein [Pyrobaculum
calidifontis JCM 11548]
gi|126250465|gb|ABO09556.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
calidifontis JCM 11548]
Length = 80
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 24 GRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 81
G+ V+VKL + RGIL D ++N+ ++ EE ++G + K G +RG NVL+IS
Sbjct: 21 GKQVLVKLRDSHEIRGILKAFDQHVNLLLDDAEEIIDGNVY-KRGTIVVRGENVLFIS 77
>gi|119481967|ref|XP_001261012.1| LSM domain protein [Neosartorya fischeri NRRL 181]
gi|119409166|gb|EAW19115.1| LSM domain protein [Neosartorya fischeri NRRL 181]
Length = 84
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 24 GRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIST 82
G ++++L G +Y+G L +D YMN+ + TEE+++G+ G IR NN+L++ +
Sbjct: 13 GTELIIRLKWGQTEYKGKLESIDSYMNVLLRDTEEFIDGKNTGTLGLVLIRCNNILWMGS 72
Query: 83 S 83
+
Sbjct: 73 A 73
>gi|48477742|ref|YP_023448.1| small nuclear ribonucleoprotein [Picrophilus torridus DSM 9790]
gi|48430390|gb|AAT43255.1| snRNP Sm-like protein [Picrophilus torridus DSM 9790]
Length = 82
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
+A P D LK+ + ++V + Y G L D YMN+ + E +NG+ K +
Sbjct: 5 TAYVSKPMDVLKNSLEKNIMVDVKGNRTYSGTLEGYDIYMNVVLSNVSETINGENKGVFE 64
Query: 69 DAFIRGNNVLYISTSK 84
+RG+N++++S S+
Sbjct: 65 KMLVRGDNIIFVSPSR 80
>gi|385805901|ref|YP_005842299.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
gi|383795764|gb|AFH42847.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
Length = 76
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEE-YVNGQLKNKYGDA 70
+ T L S G+ V+VKL + RG L D ++NI +E EE + +GQ + K G
Sbjct: 2 SDTAHKILSSSMGQTVLVKLKGNKEVRGKLKSYDHHLNIVLEDAEELFPDGQAR-KLGTV 60
Query: 71 FIRGNNVLYISTS 83
IRG+NV+ IS +
Sbjct: 61 IIRGDNVIIISPA 73
>gi|402470654|gb|EJW04787.1| hypothetical protein EDEG_01009 [Edhazardia aedis USNM 41457]
Length = 75
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 17 DFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNG-QLKNKYGDAFIRGN 75
DF V++K + G YRG C+DGY+NI++E Y L AFI+G+
Sbjct: 6 DFYSKFLNTNVIIKGSDGCIYRGKALCIDGYLNISLESVTVYEGSVCLPTVLNTAFIKGS 65
Query: 76 NVLYISTSK 84
N+ YIS S+
Sbjct: 66 NIEYISISE 74
>gi|315426676|dbj|BAJ48302.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315428002|dbj|BAJ49591.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|343485412|dbj|BAJ51066.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
Length = 77
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
TK ++ I +PV V L + Y G + DGYMN+ +E EY+ Y
Sbjct: 5 TKPLTTLMRQI-NKPVRVFLKNDARYEGTMVECDGYMNMLLEHVVEYMGDSKTAGYPKVL 63
Query: 72 IRGNNVLYISTSKR 85
IRGNN++YI +++
Sbjct: 64 IRGNNIMYIIFAEK 77
>gi|296806595|ref|XP_002844107.1| LSM domain-containing protein [Arthroderma otae CBS 113480]
gi|238845409|gb|EEQ35071.1| LSM domain-containing protein [Arthroderma otae CBS 113480]
Length = 88
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P L+S+ +VV+L G +Y+G L +D YMNI + QTEE+++G+ G+ IR
Sbjct: 8 PRPMLQSLINDDIVVRLKWGQTEYKGRLVSVDSYMNIQLSQTEEFIDGRNTGTLGEVLIR 67
>gi|14520857|ref|NP_126332.1| small nuclear ribonucleoprotein [Pyrococcus abyssi GE5]
gi|10720266|sp|Q9V0Y8.1|RUXX_PYRAB RecName: Full=Putative snRNP Sm-like protein
gi|27573606|pdb|1H64|1 Chain 1, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573607|pdb|1H64|2 Chain 2, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573608|pdb|1H64|A Chain A, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573609|pdb|1H64|B Chain B, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573610|pdb|1H64|C Chain C, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573611|pdb|1H64|D Chain D, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573612|pdb|1H64|E Chain E, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573613|pdb|1H64|F Chain F, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573614|pdb|1H64|G Chain G, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573615|pdb|1H64|H Chain H, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573616|pdb|1H64|I Chain I, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573617|pdb|1H64|J Chain J, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573618|pdb|1H64|K Chain K, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573619|pdb|1H64|L Chain L, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573620|pdb|1H64|M Chain M, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573621|pdb|1H64|N Chain N, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573622|pdb|1H64|O Chain O, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573623|pdb|1H64|P Chain P, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573624|pdb|1H64|Q Chain Q, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573625|pdb|1H64|R Chain R, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573626|pdb|1H64|S Chain S, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573627|pdb|1H64|T Chain T, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573628|pdb|1H64|U Chain U, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573629|pdb|1H64|V Chain V, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573630|pdb|1H64|W Chain W, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573631|pdb|1H64|X Chain X, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573632|pdb|1H64|Y Chain Y, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573633|pdb|1H64|Z Chain Z, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|5458074|emb|CAB49563.1| Heptameric Sm/Lsm protein [Pyrococcus abyssi GE5]
gi|380741401|tpe|CCE70035.1| TPA: small nuclear ribonucleoprotein [Pyrococcus abyssi GE5]
Length = 75
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
+ P D + + V+V L G ++RG L D ++N+ + E +G++ +YG
Sbjct: 2 AERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIV 61
Query: 72 IRGNNVLYISTSK 84
IRG+NVL IS ++
Sbjct: 62 IRGDNVLAISPTE 74
>gi|154413372|ref|XP_001579716.1| Sm protein [Trichomonas vaginalis G3]
gi|121913926|gb|EAY18730.1| Sm protein [Trichomonas vaginalis G3]
Length = 76
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 18 FLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNV 77
FL++ +P V L++G G L +D N+ + E NG KY FIRGN V
Sbjct: 10 FLQATLQKPTHVVLSTGSQLIGTLCTIDALFNLVLRDAVEMSNGNEVGKYQSIFIRGNQV 69
Query: 78 LYISTS 83
++++T+
Sbjct: 70 VHVATA 75
>gi|212223792|ref|YP_002307028.1| small nuclear ribonucleoprotein [Thermococcus onnurineus NA1]
gi|229559994|sp|B6YUU5.1|RUXX_THEON RecName: Full=Putative snRNP Sm-like protein
gi|212008749|gb|ACJ16131.1| Hypothetical small nuclear ribonucleoprotein [Thermococcus
onnurineus NA1]
Length = 78
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 11 TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
+ P D + + V+V L G ++RG L D ++NI + E +G++ KYG
Sbjct: 1 MAERPLDVIHRSLDKDVLVILKKGFEFRGKLIGYDIHLNIVLAGAEMIQDGEVVKKYGKI 60
Query: 71 FIRGNNVLYIS 81
IRG+NVL IS
Sbjct: 61 VIRGDNVLAIS 71
>gi|170291130|ref|YP_001737946.1| like-Sm ribonucleoprotein core [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175210|gb|ACB08263.1| Like-Sm ribonucleoprotein core [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 78
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEY--VNGQLKNKYGDA 70
+ P LK G V V+L +G G L D MN+ ++ E +G++K G
Sbjct: 6 ELPLSHLKKSHGAEVTVRLKNGSQIVGKLIVYDEMMNLVLDSAREVDPASGEVKRSVGTL 65
Query: 71 FIRGNNVLYIS 81
FIRGNNVL+++
Sbjct: 66 FIRGNNVLFVT 76
>gi|171184523|ref|YP_001793442.1| like-Sm ribonucleoprotein core [Pyrobaculum neutrophilum V24Sta]
gi|170933735|gb|ACB38996.1| Like-Sm ribonucleoprotein core [Pyrobaculum neutrophilum V24Sta]
Length = 80
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 24 GRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 81
G+ V+VKL + RGIL D ++N+ ++ EE ++G + K G +RG NVL+IS
Sbjct: 21 GKQVLVKLRDSHEIRGILRSFDQHVNLLLDDAEEIIDGNVY-KRGTIVVRGENVLFIS 77
>gi|71649985|ref|XP_813700.1| small nuclear ribonucleoprotein Sm-F [Trypanosoma cruzi strain CL
Brener]
gi|71651762|ref|XP_814552.1| small nuclear ribonucleoprotein Sm-F [Trypanosoma cruzi strain CL
Brener]
gi|70878609|gb|EAN91849.1| small nuclear ribonucleoprotein Sm-F, putative [Trypanosoma
cruzi]
gi|70879534|gb|EAN92701.1| small nuclear ribonucleoprotein Sm-F, putative [Trypanosoma
cruzi]
Length = 74
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
PA FL S+ G V VK G Y G L D YMN+ + T E + + + G+ +R
Sbjct: 5 VPAAFLASLVGSTVHVKSKWGPVYVGTLVSCDPYMNLQLRDTVE--KAKEETELGEMLLR 62
Query: 74 GNNVLYI 80
NNVLYI
Sbjct: 63 CNNVLYI 69
>gi|71745372|ref|XP_827316.1| small nuclear ribonucleoprotein Sm-F [Trypanosoma brucei TREU927]
gi|9837170|gb|AAG00459.1|AF280391_1 Sm-F [Trypanosoma brucei]
gi|70831481|gb|EAN76986.1| small nuclear ribonucleoprotein Sm-F [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261331524|emb|CBH14518.1| small nuclear ribonucleoprotein Sm-F [Trypanosoma brucei
gambiense DAL972]
Length = 75
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
PA FL S+ G V VK G Y G L D YMN+ + E + + + GD +R
Sbjct: 5 VPAAFLASLVGNTVHVKSKWGPVYVGTLVSCDPYMNLQLRDAVE--KAKQETELGDMLLR 62
Query: 74 GNNVLYI 80
NNVLYI
Sbjct: 63 NNNVLYI 69
>gi|294881583|ref|XP_002769420.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
gi|239872829|gb|EER02138.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
Length = 137
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G+P++V+L +G Y G+LA D +MN+ + + +G K +A+IR
Sbjct: 4 PMSLLKTAQGQPIMVELKNGEAYSGVLANCDSWMNLHIRDAVLTSKDGDRFWKLAEAYIR 63
Query: 74 GNNVLYI 80
GN++ Y+
Sbjct: 64 GNHIKYL 70
>gi|352682842|ref|YP_004893366.1| hypothetical protein TTX_1667 [Thermoproteus tenax Kra 1]
gi|350275641|emb|CCC82288.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Thermoproteus tenax Kra 1]
Length = 86
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN-GQLKNKYGDAFI 72
+P L + + VV +L V RG+L+ D MN+ ++ EE G K +YG I
Sbjct: 12 SPLKVLSKMVNKVVVARLKGDVVVRGVLSIYDSCMNLVLDNAEELDKVGNAKMRYGRILI 71
Query: 73 RGNNVLYISTSK 84
RG+ ++YIS+ +
Sbjct: 72 RGSQIIYISSEE 83
>gi|15920417|ref|NP_376086.1| small nuclear ribonucleoprotein [Sulfolobus tokodaii str. 7]
gi|342306116|dbj|BAK54205.1| archaeal Sm protein [Sulfolobus tokodaii str. 7]
Length = 90
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLK--NK 66
A + P LK+ + V+VKL G +Y G L DG MN+ + E G + K
Sbjct: 7 QAKIENPLKSLKTATNKIVLVKLKDGSEYVGRLEQSDGTMNLVLRDCIETREGTAEPVAK 66
Query: 67 YGDAFIRGNNVLYISTSKRTL 87
YG IRG+N+L+IS L
Sbjct: 67 YGRVLIRGSNILFISVDYEAL 87
>gi|124001183|ref|XP_001277012.1| Sm protein [Trichomonas vaginalis G3]
gi|121918998|gb|EAY23764.1| Sm protein [Trichomonas vaginalis G3]
Length = 76
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 18 FLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNV 77
FL++ +P V L++G G L +D N+ + E NG +Y FIRGN V
Sbjct: 10 FLQATLQKPTHVVLSTGSQLVGTLCTIDALFNLVLRDAVEMSNGNEVGRYQSIFIRGNQV 69
Query: 78 LYISTS 83
++++T+
Sbjct: 70 IHVATA 75
>gi|345560998|gb|EGX44114.1| hypothetical protein AOL_s00210g95 [Arthrobotrys oligospora ATCC
24927]
Length = 145
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT-EEYVNGQLKNKYGDAFIR 73
P L +++G P++V+L +G G L D +MN+ +++ + +G+ ++ +A++R
Sbjct: 3 PLTLLTTVQGHPLLVELKNGETLNGHLVSCDTWMNLTLKEVIQTSPDGETFHRLPEAYVR 62
Query: 74 GNNVLYI 80
GNN+ Y+
Sbjct: 63 GNNIKYL 69
>gi|294866382|ref|XP_002764688.1| Small nuclear ribonucleoprotein Sm D1, putative [Perkinsus
marinus ATCC 50983]
gi|239864378|gb|EEQ97405.1| Small nuclear ribonucleoprotein Sm D1, putative [Perkinsus
marinus ATCC 50983]
Length = 349
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G+P++V+L +G Y G+LA D +MN+ + + +G K +A+IR
Sbjct: 4 PMSLLKTAQGQPIMVELKNGEAYSGVLANCDSWMNLHIRDAVLTSKDGDRFWKLAEAYIR 63
Query: 74 GNNVLYI 80
GN++ Y+
Sbjct: 64 GNHIKYL 70
>gi|19113071|ref|NP_596279.1| U6 snRNP-associated protein Lsm4 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|12230213|sp|O14352.1|LSM4_SCHPO RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4
gi|2276355|emb|CAB10801.1| U6 snRNP-associated protein Lsm4 (predicted) [Schizosaccharomyces
pombe]
Length = 121
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P L + +GRP++V+L +G + G L D YMN+ + E +G + + +IR
Sbjct: 3 PLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIR 62
Query: 74 GNNVLYISTSKRTLADGA 91
GNN+ Y+ L+ A
Sbjct: 63 GNNIKYLRIQDEVLSQVA 80
>gi|340056303|emb|CCC50633.1| small nuclear ribonucleoprotein Sm-F [Trypanosoma vivax Y486]
Length = 75
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
PA FL S+ G V VK G Y G L D +MN+ + T E + + + G+ +R
Sbjct: 5 VPAAFLASLVGNTVHVKSKWGPVYVGTLVSCDSHMNLQLRDTVE--KAKQETELGEMLLR 62
Query: 74 GNNVLYI 80
NNVLYI
Sbjct: 63 NNNVLYI 69
>gi|300707099|ref|XP_002995772.1| hypothetical protein NCER_101246 [Nosema ceranae BRL01]
gi|239604984|gb|EEQ82101.1| hypothetical protein NCER_101246 [Nosema ceranae BRL01]
Length = 79
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 8 GSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKY 67
+ T+ P FL + + + + L G Y G+L D Y N + + +EY N + N+
Sbjct: 2 NTVQTENPKQFLNRLINKKIRIFLKWGQYYEGVLIEFDKYFNFVLSECKEYDN-EFINEM 60
Query: 68 GDAFIRGNNV 77
G FIR NNV
Sbjct: 61 GSIFIRCNNV 70
>gi|356573341|ref|XP_003554820.1| PREDICTED: uncharacterized protein LOC100777432 [Glycine max]
Length = 154
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 24 GRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
G+PV+VKL G++Y+G +D +MN+ + EEY GQ + IRG
Sbjct: 10 GKPVIVKLKWGMEYKGYPVSIDSFMNLQLANIEEYNEGQFIVNLEEILIRG 60
>gi|453081451|gb|EMF09500.1| small nuclear ribonucleo protein SmF [Mycosphaerella populorum
SO2202]
Length = 89
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEE-YVNGQLKNKYGDAFI 72
P L+ + + V+V++ G +Y G L +D YMNI + EE +G G I
Sbjct: 7 NPRPMLQGLVNKDVIVRIKWGQEYSGRLVSVDSYMNIQLSGAEEKSPDGHDGGVLGQVLI 66
Query: 73 RGNNVLYISTSKR 85
R NNVL+IS +
Sbjct: 67 RCNNVLWISAKDK 79
>gi|154345205|ref|XP_001568544.1| putative sm-f snRNP core complex protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065881|emb|CAM43661.1| putative sm-f snRNP core complex protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 77
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL S+ G+ V+VK G Y G L D +MN+ + E+ + + G+ +R
Sbjct: 5 VPGAFLHSLVGKKVLVKSKWGPVYEGNLVSCDTFMNLQLRDAVEH--AKQDTELGEMLLR 62
Query: 74 GNNVLYISTSKRT 86
NN+LYI + T
Sbjct: 63 NNNILYIREATTT 75
>gi|374632978|ref|ZP_09705345.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
gi|373524462|gb|EHP69339.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
Length = 86
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN--K 66
A + P L+ + V+VKL G +Y G L DG MN+ + E G + K
Sbjct: 2 QAKVENPLKSLRMATNKVVLVKLKDGSEYIGRLEQSDGTMNLVLRDCTELKEGTVDPIAK 61
Query: 67 YGDAFIRGNNVLYIST 82
YG IRG+N+L+IS
Sbjct: 62 YGRVLIRGSNILFISV 77
>gi|429964806|gb|ELA46804.1| hypothetical protein VCUG_01704 [Vavraia culicis 'floridensis']
Length = 81
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
T + P FLK+ G+ + + L VDY GIL D NI + E+V+ ++ K
Sbjct: 3 ETTKENPKQFLKARIGKRIRISLKWNVDYEGILDGFDDNFNIEVSSVSEFVDSKMVGKLK 62
Query: 69 DAFIRGNNV 77
IR NN+
Sbjct: 63 RMVIRCNNI 71
>gi|315425168|dbj|BAJ46838.1| hypothetical conserved protein [Candidatus Caldiarchaeum
subterraneum]
Length = 66
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 25 RPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSK 84
+PV V L + Y G + DGYMN+ +E EY+ Y IRGNN++YI ++
Sbjct: 6 KPVRVFLKNDARYEGTMVECDGYMNMLLEHVVEYMGDSKTAGYPKVLIRGNNIMYIIFAE 65
Query: 85 R 85
+
Sbjct: 66 K 66
>gi|119719646|ref|YP_920141.1| like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
gi|119524766|gb|ABL78138.1| Like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
Length = 100
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN-GQLKNKYGDAFIR 73
P + L++ G+ V VKL G +Y G L D MN+ ++ +E ++ + G FIR
Sbjct: 3 PIEHLRNQSGKGVFVKLKDGSEYMGKLRMTDAAMNLVLDDAKELTETNKVVAQLGTVFIR 62
Query: 74 GNNVLYIS 81
G+N+L++S
Sbjct: 63 GSNLLFVS 70
>gi|401429920|ref|XP_003879442.1| putative sm-f snRNP core complex protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495692|emb|CBZ30998.1| putative sm-f snRNP core complex protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 76
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
+ P FL S+ G+ V+VK G Y G L D +MN+ + E+ + + G+
Sbjct: 3 SNVPGAFLHSLVGKKVLVKSKWGPVYEGNLVSCDTFMNLQLRNAVEH--AKQDTELGEML 60
Query: 72 IRGNNVLYI 80
+R NN+LYI
Sbjct: 61 LRNNNILYI 69
>gi|170291026|ref|YP_001737842.1| Sm ribonucleoprotein core-like protein [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175106|gb|ACB08159.1| Sm ribonucleoprotein core-like protein [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 80
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 20 KSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLY 79
KS+ G V+V L +GV RGIL D ++N+ ++ EE + G K IRG+NV+
Sbjct: 10 KSMNG-SVLVILKNGVYVRGILKSYDNHLNLILDNAEEIMEGNAKKLGKRVLIRGDNVIA 68
Query: 80 ISTSK 84
IST K
Sbjct: 69 ISTQK 73
>gi|296212953|ref|XP_002753080.1| PREDICTED: aldehyde dehydrogenase, mitochondrial [Callithrix
jacchus]
Length = 506
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 28/39 (71%), Gaps = 4/39 (10%)
Query: 29 VKLNSGVDY-RGILACLDGYMNIAMEQTEEYVNGQLKNK 66
+K SG+ RG+ C YMN A+EQTEEYVNGQLKNK
Sbjct: 423 IKFWSGLSRGRGLPRC---YMNTALEQTEEYVNGQLKNK 458
>gi|70606993|ref|YP_255863.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM
639]
gi|68567641|gb|AAY80570.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM
639]
Length = 79
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%)
Query: 8 GSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKY 67
G ++T L G V+VKL RG L D +MN+ +E +EE +N K
Sbjct: 4 GVIVSETAHKVLAESLGSTVLVKLKGEKIVRGTLKSYDMHMNLVLENSEEIMNDGSTRKV 63
Query: 68 GDAFIRGNNVLYIS 81
G IRG+NV+ +S
Sbjct: 64 GTIVIRGDNVILVS 77
>gi|50545437|ref|XP_500256.1| YALI0A19756p [Yarrowia lipolytica]
gi|49646121|emb|CAG84194.1| YALI0A19756p [Yarrowia lipolytica CLIB122]
Length = 131
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEY-VNGQLKNKYGDAFIR 73
P L + +G+P++V+L SG RG L D +MN+ +++ EE+ +G+ + ++R
Sbjct: 5 PLSLLNAAQGQPMLVELKSGESLRGHLLKCDHWMNLTLKEVEEFSASGENTATVSEYYVR 64
Query: 74 GNNV 77
G+N+
Sbjct: 65 GSNI 68
>gi|281340394|gb|EFB15978.1| hypothetical protein PANDA_007902 [Ailuropoda melanoleuca]
Length = 44
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNI 50
P FL + G+PV+VKL G++Y+G L +DGYMN+
Sbjct: 6 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNM 41
>gi|403174347|ref|XP_003333333.2| hypothetical protein PGTG_15117 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375170935|gb|EFP88914.2| hypothetical protein PGTG_15117 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 248
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT-EEYVNGQLKNKYGDAFIR 73
P L +G+P++V+L +G + G L D +MN+ M + + NG+ K + +IR
Sbjct: 102 PLALLHGAQGKPMLVELKNGETFNGHLIQCDNFMNLTMREVYQTSANGEQFWKLPECYIR 161
Query: 74 GNNVLYI 80
GN + YI
Sbjct: 162 GNTIKYI 168
>gi|452819748|gb|EME26801.1| U6 snRNA-associated Sm-like protein LSm4 isoform 1 [Galdieria
sulphuraria]
Length = 110
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G+PV+V+L SG Y G L +D +MN+ + E G K + ++R
Sbjct: 4 PLSLLKAAQGQPVLVELKSGDTYNGHLVNIDSWMNLNLREVVWTSREGDRFWKIAEIYVR 63
Query: 74 GNNVLYISTSKR---TLAD 89
GN V Y+ + TL D
Sbjct: 64 GNTVKYLRVPEEIVDTLTD 82
>gi|452819749|gb|EME26802.1| U6 snRNA-associated Sm-like protein LSm4 isoform 2 [Galdieria
sulphuraria]
Length = 127
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G+PV+V+L SG Y G L +D +MN+ + E G K + ++R
Sbjct: 4 PLSLLKAAQGQPVLVELKSGDTYNGHLVNIDSWMNLNLREVVWTSREGDRFWKIAEIYVR 63
Query: 74 GNNVLYI 80
GN V Y+
Sbjct: 64 GNTVKYL 70
>gi|395841395|ref|XP_003793525.1| PREDICTED: uncharacterized protein LOC100954411 [Otolemur
garnettii]
Length = 186
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+ PA L + ++VKLN G +GIL D +MN+ +++ E +N G I
Sbjct: 113 EVPASVLLKLLFPFIIVKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVI 172
Query: 73 RGNNVLYISTSKRT 86
RGN+++ + +R
Sbjct: 173 RGNSIIMLEALERV 186
>gi|294877652|ref|XP_002768059.1| small nuclear ribonucleoprotein F, putative [Perkinsus marinus
ATCC 50983]
gi|239870256|gb|EER00777.1| small nuclear ribonucleoprotein F, putative [Perkinsus marinus
ATCC 50983]
Length = 87
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKY 67
S P FL + G+ V+V+L + ++ +G L +D +MN+ ++ EE+ +G K
Sbjct: 22 SVVPVNPQPFLNDLTGQEVLVRLKWATLELKGRLQSVDTFMNLRLDHCEEWQSGNFKGAL 81
Query: 68 GDAFIR 73
GD IR
Sbjct: 82 GDVLIR 87
>gi|315230063|ref|YP_004070499.1| snRNP Sm-like protein [Thermococcus barophilus MP]
gi|315183091|gb|ADT83276.1| putative snRNP Sm-like protein [Thermococcus barophilus MP]
Length = 76
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P D + + V+V L G ++RG L D ++N+ + + G++ KYG IRG
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLADAQLIEGGEVTKKYGKIVIRG 64
Query: 75 NNVLYIS 81
+NVL IS
Sbjct: 65 DNVLAIS 71
>gi|119872206|ref|YP_930213.1| like-Sm ribonucleoprotein, core [Pyrobaculum islandicum DSM 4184]
gi|119673614|gb|ABL87870.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
islandicum DSM 4184]
Length = 86
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN-GQLKNKYGDAFI 72
+P L + + +V +L GV +G L DG MN+ ++ E N G+ +YG +
Sbjct: 12 SPIKVLTKMLNKEIVARLKGGVAVKGTLTAYDGCMNLVLDNAAELNNSGEPVTRYGRIVV 71
Query: 73 RGNNVLYISTSKRT 86
RG+ V+Y+S + T
Sbjct: 72 RGSQVIYVSALEVT 85
>gi|213406934|ref|XP_002174238.1| U6 snRNP-associated protein Lsm4 [Schizosaccharomyces japonicus
yFS275]
gi|212002285|gb|EEB07945.1| U6 snRNP-associated protein Lsm4 [Schizosaccharomyces japonicus
yFS275]
Length = 119
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT-EEYVNGQLKNKYGDAFIR 73
P L + +GRP++V+L +G + G L D YMN+ +++ + G + + +IR
Sbjct: 3 PLTLLNAAQGRPILVELKNGETFNGHLEKCDNYMNLTLQEVIQTMPEGDKFFRMPECYIR 62
Query: 74 GNNVLYISTSKRTLADGA 91
GNN+ Y+ + A
Sbjct: 63 GNNIKYLRVQDELVEQVA 80
>gi|347522706|ref|YP_004780276.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
gi|343459588|gb|AEM38024.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
Length = 92
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQL--KNKYGDAF 71
+P L+ R R ++VKL G +Y G L DG MN+ + E + + K KYG
Sbjct: 8 SPLRVLREARNRVILVKLKDGSEYIGKLELTDGTMNLILSDCVEVDSETMEPKVKYGRVL 67
Query: 72 IRGNNVLYIST 82
IRG+ V+++S
Sbjct: 68 IRGSMVVFVSV 78
>gi|374327633|ref|YP_005085833.1| Sm-like protein [Pyrobaculum sp. 1860]
gi|356642902|gb|AET33581.1| Sm-like protein [Pyrobaculum sp. 1860]
Length = 67
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 25 RPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEY-VNGQLKNKYGDAFIRGNNVLYISTS 83
+ +V +L GV RG+L DG MN+ ++ E +G+ +YG +RG+ V+Y+ST
Sbjct: 4 KEIVARLKGGVAVRGVLTAYDGCMNLVLDDAAELDKSGEPVTRYGRIVVRGSQVIYVSTG 63
Query: 84 K 84
+
Sbjct: 64 E 64
>gi|57640911|ref|YP_183389.1| small nuclear ribonucleoprotein [Thermococcus kodakarensis KOD1]
gi|73919284|sp|Q5JIE0.1|RUXX_PYRKO RecName: Full=Putative snRNP Sm-like protein
gi|57159235|dbj|BAD85165.1| snRNP component, Sm-like protein [Thermococcus kodakarensis KOD1]
Length = 76
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 11 TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
+ P D + + V+V L G ++RG L D ++N+ + E +G++ KYG
Sbjct: 1 MAERPLDVIHKSLDKDVLVLLKRGNEFRGKLIGYDIHLNVVLADAELIQDGEVVKKYGKI 60
Query: 71 FIRGNNVLYIS 81
IRG+NVL +S
Sbjct: 61 VIRGDNVLALS 71
>gi|303388982|ref|XP_003072724.1| small nuclear ribonucleoprotein F [Encephalitozoon intestinalis
ATCC 50506]
gi|303301866|gb|ADM11364.1| small nuclear ribonucleoprotein F [Encephalitozoon intestinalis
ATCC 50506]
Length = 81
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 8 GSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKY 67
G + + P FL IR + V V L G Y G+L D Y NI +++ E +G+ +
Sbjct: 7 GKPSRENPKQFLHRIRDKNVSVTLKWGQVYEGVLVTSDNYFNILLDKCIEK-DGESEAMV 65
Query: 68 GDAFIRGNNVLYISTS 83
G+ IR NN+ I+ S
Sbjct: 66 GEVTIRCNNIKSIAES 81
>gi|254167717|ref|ZP_04874567.1| hypothetical protein ABOONEI_1009 [Aciduliprofundum boonei T469]
gi|197623245|gb|EDY35810.1| hypothetical protein ABOONEI_1009 [Aciduliprofundum boonei T469]
Length = 53
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 31/46 (67%)
Query: 36 DYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 81
+YRG+L D ++N+ ++ EE +NG+ K + +RG+NV+YIS
Sbjct: 6 EYRGVLDGYDQHLNLVLKNVEEIINGESKGVHNVVIVRGDNVIYIS 51
>gi|221220698|gb|ACM09010.1| Small nuclear ribonucleoprotein G [Salmo salar]
gi|221221936|gb|ACM09629.1| Small nuclear ribonucleoprotein G [Salmo salar]
Length = 76
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + + +KLN G +G+L D +MN+ M+ E G ++N G IRGN+++
Sbjct: 9 LKKFMDKKLSLKLNGGRQVQGVLRGFDPFMNLVMDDCLEMAPGGIQNTIGMVVIRGNSII 68
Query: 79 YISTSKRT 86
+ +R
Sbjct: 69 MLEALERV 76
>gi|375082287|ref|ZP_09729353.1| small nuclear ribonucleoprotein [Thermococcus litoralis DSM 5473]
gi|374743044|gb|EHR79416.1| small nuclear ribonucleoprotein [Thermococcus litoralis DSM 5473]
Length = 76
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
+ P D + + V+V L G ++RG L D ++N+ + + +G+ K YG
Sbjct: 2 AERPLDVIHKSLDKEVLVILKRGAEFRGRLIGYDIHLNVVLADAQLIEDGEPKKNYGKIV 61
Query: 72 IRGNNVLYIS 81
IRG+NVL IS
Sbjct: 62 IRGDNVLAIS 71
>gi|440797084|gb|ELR18179.1| small nuclear ribonucleoprotein G, putative [Acanthamoeba
castellanii str. Neff]
Length = 76
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
L+ + + ++LN+ GIL D +MN+ +E T E V+ KN+ G IRGN+V+
Sbjct: 9 LRRYMDKKLAIRLNANRRVSGILRGFDQFMNLVLEDTVEEVSSTEKNELGMVVIRGNSVI 68
Query: 79 YISTSKR 85
I +R
Sbjct: 69 LIEPLER 75
>gi|58265314|ref|XP_569813.1| glycine rich protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57226045|gb|AAW42506.1| glycine rich protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 117
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT-EEYVNGQLKNKYGDAFIR 73
P L + +G+P++V+L +GV + G L D +MN+ + + + +G+ K + FI+
Sbjct: 3 PLSLLTAAQGKPMLVELKNGVTFNGHLVECDTFMNVTLREVYQTSADGERFWKMKEMFIK 62
Query: 74 GNNVLYISTSKRTLADGA 91
GN + Y + L A
Sbjct: 63 GNIIKYFRIADNILEQAA 80
>gi|429216595|ref|YP_007174585.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM
15908]
gi|429133124|gb|AFZ70136.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM
15908]
Length = 79
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
MS + T K AD+L S V+VK+ + +GIL D ++N+ +E+ EE +
Sbjct: 1 MSENSHLQANTFKAMADYLNS----SVLVKMKGNREVKGILTSYDQHLNLILEKAEE-LE 55
Query: 61 GQLKNKYGDAFIRGNNVLYISTS 83
G++ G +RG+NV+ +S +
Sbjct: 56 GKVSRPLGLVLLRGDNVIAVSPA 78
>gi|389595241|ref|XP_003722843.1| putative sm-f snRNP core complex protein [Leishmania major strain
Friedlin]
gi|323364071|emb|CBZ13077.1| putative sm-f snRNP core complex protein [Leishmania major strain
Friedlin]
Length = 76
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL S+ G+ V+VK G Y G L D +MN+ + E+ + + G+ +R
Sbjct: 5 VPGAFLHSLIGKNVLVKSKWGPVYEGNLVSCDTFMNLQLRNAVEH--AKQDTELGEMLLR 62
Query: 74 GNNVLYI 80
NN+LYI
Sbjct: 63 NNNILYI 69
>gi|237831965|ref|XP_002365280.1| U6 snRNA-associated Sm-like protein, putative [Toxoplasma gondii
ME49]
gi|211962944|gb|EEA98139.1| U6 snRNA-associated Sm-like protein, putative [Toxoplasma gondii
ME49]
Length = 86
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 43 CLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNN 76
CLD MNIAM++ EE+V+G YG + IRGNN
Sbjct: 39 CLDDRMNIAMDKAEEFVDGNFVAAYGLSLIRGNN 72
>gi|213513524|ref|NP_001134580.1| Small nuclear ribonucleoprotein G [Salmo salar]
gi|209734434|gb|ACI68086.1| Small nuclear ribonucleoprotein G [Salmo salar]
gi|303659717|gb|ADM15968.1| Small nuclear ribonucleoprotein G [Salmo salar]
Length = 76
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + + +KLN G +G+L D +MN+ M+ E G ++N G IRGN+++
Sbjct: 9 LKKFMDKKLSLKLNGGRQVQGVLRGFDPFMNLVMDDCLEMAPGGIQNTIGLVVIRGNSII 68
Query: 79 YISTSKRT 86
+ +R
Sbjct: 69 MLEALERV 76
>gi|146101999|ref|XP_001469255.1| putative sm-f snRNP core complex protein [Leishmania infantum
JPCM5]
gi|398023737|ref|XP_003865030.1| sm-f snRNP core complex protein, putative [Leishmania donovani]
gi|134073624|emb|CAM72358.1| putative sm-f snRNP core complex protein [Leishmania infantum
JPCM5]
gi|322503266|emb|CBZ38351.1| sm-f snRNP core complex protein, putative [Leishmania donovani]
Length = 76
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL S+ G+ V+VK G Y G L D +MN+ + E+ + + G+ +R
Sbjct: 5 VPGAFLHSLIGKNVLVKSKWGPVYEGNLVSCDTFMNLQLRNAVEH--AKQDTELGEMLLR 62
Query: 74 GNNVLYI 80
NN+LYI
Sbjct: 63 NNNILYI 69
>gi|449067225|ref|YP_007434307.1| hypothetical protein SacN8_05970 [Sulfolobus acidocaldarius N8]
gi|449069496|ref|YP_007436577.1| hypothetical protein SacRon12I_05965 [Sulfolobus acidocaldarius
Ron12/I]
gi|449035733|gb|AGE71159.1| hypothetical protein SacN8_05970 [Sulfolobus acidocaldarius N8]
gi|449038004|gb|AGE73429.1| hypothetical protein SacRon12I_05965 [Sulfolobus acidocaldarius
Ron12/I]
Length = 73
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
++T L G V+VKL RG L D +MN+ +E +EE +N K G
Sbjct: 2 SETAHKVLAESLGSTVLVKLKGEKIVRGTLKSYDMHMNLVLENSEEIMNDGSTRKVGTIV 61
Query: 72 IRGNNVLYIS 81
IRG+NV+ +S
Sbjct: 62 IRGDNVILVS 71
>gi|374327713|ref|YP_005085913.1| hypothetical protein P186_2269 [Pyrobaculum sp. 1860]
gi|356642982|gb|AET33661.1| hypothetical protein P186_2269 [Pyrobaculum sp. 1860]
Length = 57
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 27 VVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 81
++VKL + RGIL D ++N+ +E EE ++G + K G +RG NVL+IS
Sbjct: 1 MLVKLRDSHEIRGILRSFDQHVNLLLEDAEEIIDGNVY-KRGTVVVRGENVLFIS 54
>gi|171186416|ref|YP_001795335.1| like-Sm ribonucleoprotein core [Pyrobaculum neutrophilum V24Sta]
gi|170935628|gb|ACB40889.1| Like-Sm ribonucleoprotein core [Pyrobaculum neutrophilum V24Sta]
Length = 86
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN-GQLKNKYGDAFI 72
+P L + + VV +L GV RG L DG MN+ ++ E G+ +YG I
Sbjct: 12 SPIKVLTKMLNKEVVARLKGGVAVRGTLTAYDGCMNLVLDNAAELDKAGEPVARYGRIVI 71
Query: 73 RGNNVLYIST 82
RG+ V+Y+S
Sbjct: 72 RGSQVIYVSA 81
>gi|134109199|ref|XP_776714.1| hypothetical protein CNBC2050 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259394|gb|EAL22067.1| hypothetical protein CNBC2050 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 147
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT-EEYVNGQLKNKYGDAFIR 73
P L + +G+P++V+L +GV + G L D +MN+ + + + +G+ K + FI+
Sbjct: 3 PLSLLTAAQGKPMLVELKNGVTFNGHLVECDTFMNVTLREVYQTSADGERFWKMKEMFIK 62
Query: 74 GNNVLYISTSKRTLADGA 91
GN + Y + L A
Sbjct: 63 GNIIKYFRIADNILEQAA 80
>gi|429217215|ref|YP_007175205.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM
15908]
gi|429133744|gb|AFZ70756.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM
15908]
Length = 90
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 8 GSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNG-QLKNK 66
G T +P +L+ V V+L G ++ GIL D MN+ +E + E +G Q+ K
Sbjct: 3 GENKTISPMKYLRDALNAQVYVRLKDGSEFVGILKMTDSTMNLILEDSIEVKDGKQVVAK 62
Query: 67 YGDAFIRGNNVLYISTSKRTLA 88
G IRG+ + YIS + A
Sbjct: 63 IGKILIRGSMIQYISFTPEIAA 84
>gi|374629736|ref|ZP_09702121.1| Small nuclear ribonucleoprotein, LSM family [Methanoplanus
limicola DSM 2279]
gi|373907849|gb|EHQ35953.1| Small nuclear ribonucleoprotein, LSM family [Methanoplanus
limicola DSM 2279]
Length = 78
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 32 NSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 81
+ G +G+LA +D ++NI M+Q EY+N + G IRG+N+L I+
Sbjct: 26 DDGRKLKGVLAAVDEHLNIHMDQATEYINDERGRNLGTVVIRGSNILTIA 75
>gi|330835700|ref|YP_004410428.1| Sm-like ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
gi|329567839|gb|AEB95944.1| Sm-like ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
Length = 87
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN--K 66
A + P L+ + V+VKL G +Y G + DG MN+ + E G K
Sbjct: 2 QAKVENPLKSLRMATNKTVLVKLKDGSEYIGKMEQSDGTMNLVLRDCTEMKEGTADPIAK 61
Query: 67 YGDAFIRGNNVLYIS 81
YG IRG+NVL++S
Sbjct: 62 YGRVLIRGSNVLFVS 76
>gi|320164748|gb|EFW41647.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 77
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK R V++KLN GIL D +MN+ +++T E V+ +++ G IRGN++
Sbjct: 9 LKKFLDRRVILKLNGNRKVSGILRGFDPFMNVVLDETFEEVSESERHEIGMVAIRGNSIN 68
Query: 79 YISTSKRT 86
+ T R+
Sbjct: 69 MVETVDRS 76
>gi|440492813|gb|ELQ75351.1| Small nuclear ribonucleoprotein (snRNP) SMF [Trachipleistophora
hominis]
Length = 113
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
T + P FLKS G+ + + L VDY G L D NI + E+V ++ K
Sbjct: 35 TTKENPKQFLKSRLGKRIRISLKWNVDYEGTLDGFDDNFNIEVSSVSEFVESRMVGKLKK 94
Query: 70 AFIRGNNV 77
IR NN+
Sbjct: 95 MVIRCNNI 102
>gi|12230329|sp|Q9ZRU9.1|LSM4_FAGSY RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4;
AltName: Full=Glycine-rich protein 2
gi|3927916|emb|CAA10233.1| glycine-rich protein 2 [Fagus sylvatica]
Length = 148
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L SG Y G L D +MNI + E +G + D +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCYIR 62
Query: 74 GNNVLYI 80
GN + Y+
Sbjct: 63 GNTIKYL 69
>gi|168049678|ref|XP_001777289.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671391|gb|EDQ57944.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 76
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P D LK R + +KLN+G + G+L D +MN+ ++ T E V G KN+ G IRG
Sbjct: 7 PPD-LKKYMDRKLNIKLNAGRNVVGVLRGFDQFMNLVLDNTVE-VQGAEKNEIGMVVIRG 64
Query: 75 NNVLYIST 82
N+V+ I
Sbjct: 65 NSVVMIEA 72
>gi|388583911|gb|EIM24212.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 126
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT-EEYVNGQLKNKYGDAFIR 73
P L + +P++V+L SG + G L D YMN+ ++Q + +G+ K + ++R
Sbjct: 3 PLTLLNGAQNKPLLVELKSGETFNGHLIACDNYMNLTLKQVFQTNADGERFWKLPECYLR 62
Query: 74 GNNVLYISTSKRTL 87
GN + YI + L
Sbjct: 63 GNTIKYIRVADELL 76
>gi|396081223|gb|AFN82841.1| small nuclear ribonucleoprotein F [Encephalitozoon romaleae
SJ-2008]
Length = 81
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+ P FL+ ++ R V V L G Y G+L D Y N+ +++ E G+ K G+ I
Sbjct: 12 ENPKQFLQRMKNRNVSVCLKWGQVYEGVLVTSDNYFNVLLDECVEK-EGETSTKVGEVSI 70
Query: 73 RGNNVLYIS 81
R NN+ IS
Sbjct: 71 RCNNIKSIS 79
>gi|444727149|gb|ELW67654.1| hypothetical protein TREES_T100018439 [Tupaia chinensis]
Length = 106
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/21 (85%), Positives = 20/21 (95%)
Query: 59 VNGQLKNKYGDAFIRGNNVLY 79
+NGQLK+KYGDAFIRGNN LY
Sbjct: 1 MNGQLKSKYGDAFIRGNNALY 21
>gi|409095290|ref|ZP_11215314.1| small nuclear ribonucleoprotein [Thermococcus zilligii AN1]
Length = 76
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 11 TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
+ P D + R V+V L G ++RG L D ++N+ + + +G++ +YG
Sbjct: 1 MAERPLDIIHRSLDRDVLVLLKKGGEFRGKLIGYDIHLNVVLADADYIQDGEVVKRYGKI 60
Query: 71 FIRGNNVLYIS 81
+RG+NVL IS
Sbjct: 61 VVRGDNVLAIS 71
>gi|321254335|ref|XP_003193040.1| hypothetical protein CGB_C7440C [Cryptococcus gattii WM276]
gi|317459509|gb|ADV21253.1| hypothetical protein CNBC2050 [Cryptococcus gattii WM276]
Length = 141
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT-EEYVNGQLKNKYGDAFIR 73
P L + +G+P++V+L +GV + G L D +MN+ + + + +G+ K + FI+
Sbjct: 3 PLSLLTAAQGKPMLVELKNGVTFNGHLVECDTFMNVTLREVYQTSADGERFWKMKEMFIK 62
Query: 74 GNNVLYISTSKRTLADGA 91
GN + Y + L A
Sbjct: 63 GNIIKYFRIADDILEQAA 80
>gi|399218474|emb|CCF75361.1| unnamed protein product [Babesia microti strain RI]
Length = 122
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQ-TEEYVNGQLKNKYGDAFIR 73
P L++ +G P++V+L +G GIL DG+MN+ M G K + F+R
Sbjct: 4 PLTLLRTAQGHPMLVELKNGETCSGILTTCDGFMNLHMRNVVRTSREGDKFWKINECFVR 63
Query: 74 GNNV 77
GNN+
Sbjct: 64 GNNL 67
>gi|291244885|ref|XP_002742321.1| PREDICTED: small nuclear ribonucleoprotein polypeptide G-like
[Saccoglossus kowalevskii]
Length = 77
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
+K LK + + +KLN G G+L D +MN+ M+++ E ++G K++ G
Sbjct: 2 SKAHPPELKKFMDKKLSLKLNGGRQVTGVLRGYDPFMNLVMDESVEEISGGEKHQIGMVV 61
Query: 72 IRGNNVLYISTSKRT 86
IRGN+++ + R
Sbjct: 62 IRGNSIIMLEALDRV 76
>gi|449295539|gb|EMC91560.1| hypothetical protein BAUCODRAFT_38674 [Baudoinia compniacensis
UAMH 10762]
Length = 91
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P L+S+ V ++L G +Y G L +D YMN+ + EE+VNG + G IR
Sbjct: 18 PRPMLQSLVNEEVTIRLKWGQTEYTGRLVSVDSYMNVQLSGAEEWVNGSSRGTLGQVLIR 77
>gi|448474549|ref|ZP_21602408.1| Like-Sm ribonucleoprotein core [Halorubrum aidingense JCM 13560]
gi|445817856|gb|EMA67725.1| Like-Sm ribonucleoprotein core [Halorubrum aidingense JCM 13560]
Length = 80
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQ---TEEYVNGQLKNKYGDA- 70
P D L++ PV V L G Y GILA D +MN+ +E ++ V+ +L ++ A
Sbjct: 5 PLDVLEASLEEPVTVHLKDGTTYYGILAGYDQHMNVVIEPESGVDDRVDDELDGEFAVAI 64
Query: 71 ----FIRGNNVLYI 80
IRG+NV+ I
Sbjct: 65 EDTTIIRGDNVVTI 78
>gi|326936526|ref|XP_003214304.1| PREDICTED: small nuclear ribonucleoprotein G-like, partial
[Meleagris gallopavo]
Length = 60
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 27 VVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRT 86
+VVKLN G +GIL D +MN+ +++ E G +N G IRGN+++ + +R
Sbjct: 1 LVVKLNGGRHVQGILRGFDPFMNLVIDECVEMAPGGQQNNIGMVVIRGNSIIMLEALERV 60
>gi|146303015|ref|YP_001190331.1| Sm ribonucleoprotein-like protein [Metallosphaera sedula DSM
5348]
gi|145701265|gb|ABP94407.1| Small nuclear ribonucleoprotein, LSM family [Metallosphaera
sedula DSM 5348]
Length = 87
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN--K 66
A + P L+ + V+VKL G +Y G + DG MN+ + E G K
Sbjct: 2 QAKVENPLKSLRMATNKIVLVKLKDGSEYIGKMEQSDGTMNLVLRDCTEMREGTADPIAK 61
Query: 67 YGDAFIRGNNVLYIST 82
YG IRG+N+L+IS
Sbjct: 62 YGRVLIRGSNILFISV 77
>gi|432331010|ref|YP_007249153.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
gi|432137719|gb|AGB02646.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
Length = 78
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 32 NSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 81
+ G +G L +D Y+NI M++T EYV+ Q G IRGNN+L I+
Sbjct: 26 DEGRKLQGRLVAVDEYLNIHMDETIEYVDNQRGRSLGTVVIRGNNILTIA 75
>gi|62464807|ref|YP_220371.1| putative snRNP [Sulfolobus neozealandicus]
gi|56562191|emb|CAH89328.1| putative snRNP [Sulfolobus neozealandicus]
Length = 98
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 7 KGSATTKTPADFL---KSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEY--VNG 61
K + K DFL KS G+ V+V+L +G+DY G L ++ M+I ++ + +
Sbjct: 13 KNPPSEKKKDDFLEVLKSAVGKVVLVRLRNGLDYVGTLELINNEMDIVLKDCVQLDKITL 72
Query: 62 QLKNKYGDAFIRGNNVLYISTS 83
+ KYG +RGNNV +I +
Sbjct: 73 EPARKYGRLVVRGNNVEFIDIN 94
>gi|313214484|emb|CBY40846.1| unnamed protein product [Oikopleura dioica]
Length = 74
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 35 VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNN 76
++Y+G L +DGYMN+ + +EEY++G L G+ IR NN
Sbjct: 1 MEYKGYLMAVDGYMNLQLGNSEEYIDGALAGHLGEILIRCNN 42
>gi|401414085|ref|XP_003871541.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322487758|emb|CBZ22999.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 80
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
L+S+ +PV L G +YRG L LDG ++ + Q + F+RG N++
Sbjct: 5 LESLLHQPVCCHLAHGEEYRGQLEALDGTFDVVLSQCTRSRAAPRQPAEALVFLRGENII 64
Query: 79 YI 80
YI
Sbjct: 65 YI 66
>gi|392579756|gb|EIW72883.1| hypothetical protein TREMEDRAFT_24586, partial [Tremella
mesenterica DSM 1558]
Length = 104
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT-EEYVNGQLKNKYGDAFIR 73
P L + +G+P++V+L +GV + G L D +MN+ + + + +G+ K + FI+
Sbjct: 2 PLTLLNAAQGKPMLVELKNGVTFNGHLVECDNFMNVTLREVYQTSADGERFWKMKEVFIK 61
Query: 74 GNNVLYISTSKRTL 87
GN + Y + L
Sbjct: 62 GNIIKYFRIADAIL 75
>gi|305662480|ref|YP_003858768.1| Sm ribonucleoprotein-like protein [Ignisphaera aggregans DSM
17230]
gi|304377049|gb|ADM26888.1| Like-Sm ribonucleoprotein core [Ignisphaera aggregans DSM 17230]
Length = 78
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
T T L G+ V++KL G RG L D ++NI ++ EE ++ K G
Sbjct: 7 TDTAHKILAESLGQMVLIKLRGGKSVRGKLRSYDLHLNIVLDDAEEELSDGSWRKLGTVL 66
Query: 72 IRGNNVLYIS 81
IRG NV+ IS
Sbjct: 67 IRGENVVVIS 76
>gi|347522771|ref|YP_004780341.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
gi|343459653|gb|AEM38089.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
Length = 75
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
+T L+ G V+VKL + RG L D ++N+ +E+ EE + K G
Sbjct: 2 VETTHKLLEENLGSIVLVKLRGDIVVRGKLKSFDQHLNLVLEEAEEIKSDGSTRKLGTLV 61
Query: 72 IRGNNVLYISTS 83
IRG+NV+ IS +
Sbjct: 62 IRGDNVVLISPT 73
>gi|320101466|ref|YP_004177058.1| LSM family small nuclear ribonucleoprotein [Desulfurococcus
mucosus DSM 2162]
gi|319753818|gb|ADV65576.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
mucosus DSM 2162]
Length = 75
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
++T L+ GR V++K V RG L D ++NI ++ TEE K G
Sbjct: 2 SETAHKILEDSIGRLVLIKTKDSVSLRGKLRSFDQHLNIVLDDTEEIRGDGSVRKLGTVV 61
Query: 72 IRGNNVLYIS 81
IRG+ V+ IS
Sbjct: 62 IRGDTVVLIS 71
>gi|291386619|ref|XP_002709854.1| PREDICTED: small nuclear ribonucleoprotein polypeptide G
[Oryctolagus cuniculus]
Length = 76
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 11 TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
+K LK + + +KLN G +GIL D +MN+ +++ E N +N G
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMANSGQQNNIGMV 60
Query: 71 FIRGNNVLYISTSKRT 86
IRGN+++ + +R
Sbjct: 61 VIRGNSIIMLEALERV 76
>gi|323309683|gb|EGA62891.1| Lsm6p [Saccharomyces cerevisiae FostersO]
Length = 119
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEY 58
+GS TT +FL I G+ V VKL SG+ Y G L +DG+MN+A+ E+
Sbjct: 45 EGSVTT----EFLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEH 92
>gi|145347482|ref|XP_001418193.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578422|gb|ABO96486.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 115
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT-EEYVNGQLKNKYGDAFIR 73
P LK+ G P++V+L +G Y G LA D +MN+ +++ +G + + ++R
Sbjct: 3 PLTLLKTSCGHPMLVELKNGETYNGTLASCDTWMNVHLKEVICTSKDGDRFWRMAECYVR 62
Query: 74 GNNVLYISTSKRTL 87
GN + Y+ L
Sbjct: 63 GNTIKYVCVPDEVL 76
>gi|383621641|ref|ZP_09948047.1| Like-Sm ribonucleoprotein core [Halobiforma lacisalsi AJ5]
gi|448702271|ref|ZP_21699925.1| Like-Sm ribonucleoprotein core [Halobiforma lacisalsi AJ5]
gi|445777641|gb|EMA28602.1| Like-Sm ribonucleoprotein core [Halobiforma lacisalsi AJ5]
Length = 76
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT----EEYVNGQLKNKYGDA 70
P D L++ G V V+L SG +Y G LA D +MN+ +E+ +E ++G +
Sbjct: 5 PLDVLEASLGERVAVRLKSGDEYVGELAGYDQHMNLVLEEVTIPADESISGDGEPIEDTT 64
Query: 71 FIRGNNVLYIS 81
IRG+NV+ I+
Sbjct: 65 IIRGDNVVSIT 75
>gi|168067143|ref|XP_001785484.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662891|gb|EDQ49691.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 77
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P D LK + + +KLN+G + G+L D +MN+ ++ T E +NG +N+ G IRG
Sbjct: 7 PPD-LKKYMDKKLNIKLNAGRNVVGVLRGFDQFMNLVLDNTVE-INGADRNEIGMVVIRG 64
Query: 75 NNVLYIST 82
N+V+ I
Sbjct: 65 NSVVMIEA 72
>gi|390981143|pdb|4EMH|A Chain A, Crystal Structure Of Splsm4
gi|390981144|pdb|4EMH|B Chain B, Crystal Structure Of Splsm4
gi|390981145|pdb|4EMH|C Chain C, Crystal Structure Of Splsm4
gi|390981146|pdb|4EMH|D Chain D, Crystal Structure Of Splsm4
gi|390981147|pdb|4EMH|E Chain E, Crystal Structure Of Splsm4
gi|390981148|pdb|4EMH|F Chain F, Crystal Structure Of Splsm4
gi|390981149|pdb|4EMH|G Chain G, Crystal Structure Of Splsm4
gi|390981150|pdb|4EMH|H Chain H, Crystal Structure Of Splsm4
gi|390981151|pdb|4EMH|I Chain I, Crystal Structure Of Splsm4
gi|390981152|pdb|4EMH|J Chain J, Crystal Structure Of Splsm4
gi|390981153|pdb|4EMH|K Chain K, Crystal Structure Of Splsm4
gi|390981154|pdb|4EMH|L Chain L, Crystal Structure Of Splsm4
gi|390981155|pdb|4EMH|M Chain M, Crystal Structure Of Splsm4
gi|390981156|pdb|4EMH|N Chain N, Crystal Structure Of Splsm4
gi|390981157|pdb|4EMH|O Chain O, Crystal Structure Of Splsm4
gi|390981158|pdb|4EMH|P Chain P, Crystal Structure Of Splsm4
gi|390981159|pdb|4EMH|Q Chain Q, Crystal Structure Of Splsm4
gi|390981160|pdb|4EMH|R Chain R, Crystal Structure Of Splsm4
gi|390981161|pdb|4EMH|T Chain T, Crystal Structure Of Splsm4
gi|390981162|pdb|4EMH|U Chain U, Crystal Structure Of Splsm4
gi|390981163|pdb|4EMH|V Chain V, Crystal Structure Of Splsm4
gi|390981164|pdb|4EMH|W Chain W, Crystal Structure Of Splsm4
gi|390981165|pdb|4EMH|X Chain X, Crystal Structure Of Splsm4
gi|390981166|pdb|4EMH|Y Chain Y, Crystal Structure Of Splsm4
Length = 105
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P L + +GRP++V+L +G + G L D Y N+ + E +G + + +IR
Sbjct: 17 PLTLLNATQGRPILVELKNGETFNGHLENCDNYXNLTLREVIRTXPDGDKFFRLPECYIR 76
Query: 74 GNNVLYISTSKRTLADGA 91
GNN+ Y+ L+ A
Sbjct: 77 GNNIKYLRIQDEVLSQVA 94
>gi|118101457|ref|XP_001233287.1| PREDICTED: uncharacterized protein LOC771344 isoform 1 [Gallus
gallus]
gi|126303310|ref|XP_001372569.1| PREDICTED: small nuclear ribonucleoprotein G-like [Monodelphis
domestica]
gi|395507378|ref|XP_003758002.1| PREDICTED: small nuclear ribonucleoprotein G [Sarcophilus
harrisii]
gi|387018738|gb|AFJ51487.1| Sm protein G [Crotalus adamanteus]
Length = 76
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 11 TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
+K LK + + +KLN G +GIL D +MN+ +++ E G +N G
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMAPGGQQNNIGMV 60
Query: 71 FIRGNNVLYISTSKRT 86
IRGN+++ + +R
Sbjct: 61 VIRGNSIIMLEALERV 76
>gi|449329072|gb|AGE95347.1| small nuclear ribonucleoprotein f [Encephalitozoon cuniculi]
Length = 81
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+ P FL+ ++ R V V L G Y G L D Y NI +++ E + G+ K G+ I
Sbjct: 12 ENPKQFLQRMKNRSVRVALKWGQVYEGTLVASDNYFNILLDECTE-MEGEASVKIGEVSI 70
Query: 73 RGNNVLYIS 81
R NN+ I
Sbjct: 71 RCNNIKRIC 79
>gi|302831786|ref|XP_002947458.1| hypothetical protein VOLCADRAFT_79613 [Volvox carteri f.
nagariensis]
gi|300267322|gb|EFJ51506.1| hypothetical protein VOLCADRAFT_79613 [Volvox carteri f.
nagariensis]
Length = 140
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ + V+V+L +G Y G L D +MN+ + E +GQ K +A+IR
Sbjct: 3 PLSLLKTAQRHAVLVELKNGETYNGYLQQCDTWMNLHLSEVICTSKDGQRFFKMPEAYIR 62
Query: 74 GNNVLYISTSKRTL 87
GN + YIS + +
Sbjct: 63 GNTIKYISVPEEVI 76
>gi|296415636|ref|XP_002837492.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633364|emb|CAZ81683.1| unnamed protein product [Tuber melanosporum]
Length = 249
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 6 EKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLK 64
E+ A + P L + +G P++V+L +G G L D +MN+ + E + G
Sbjct: 109 ERNGARSPLPLSLLNTAQGHPMLVELKNGETLNGHLVNCDTWMNLTLKEVVQTSPEGDKF 168
Query: 65 NKYGDAFIRGNNVLYI 80
+ + ++RGNN+ Y+
Sbjct: 169 FRLAECYVRGNNIKYL 184
>gi|197127872|gb|ACH44370.1| putative small nuclear ribonucleoprotein polypeptide G
[Taeniopygia guttata]
Length = 76
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 11 TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 70
+K LK + + +KLN G +GIL D +MN+ +++ E G +N G
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMAAGGQQNNIGMV 60
Query: 71 FIRGNNVLYISTSKRT 86
IRGN+++ + +R
Sbjct: 61 VIRGNSIIMLEALERV 76
>gi|126460705|ref|YP_001056983.1| LSM family small nuclear ribonucleoprotein [Pyrobaculum
calidifontis JCM 11548]
gi|126250426|gb|ABO09517.1| Small nuclear ribonucleoprotein, LSM family [Pyrobaculum
calidifontis JCM 11548]
Length = 86
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEY-VNGQLKNKYGDAFI 72
+P L + + VV +L G+ +G+L D MN+ ++ E +G+ +YG +
Sbjct: 12 SPIKVLTKMLNKEVVARLKGGIAVKGVLTAYDSCMNLVLDDAAELDRSGEPVTRYGRIVV 71
Query: 73 RGNNVLYIS 81
RG+ V+Y+S
Sbjct: 72 RGSQVIYVS 80
>gi|353235226|emb|CCA67242.1| hypothetical protein PIIN_01075 [Piriformospora indica DSM 11827]
Length = 65
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 31 LNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
L G++YRG L D +MN+ + TEEY +G+ G+ FIR
Sbjct: 12 LKWGLEYRGFLVSTDAFMNLQLANTEEYQDGKSNGALGEVFIR 54
>gi|154151155|ref|YP_001404773.1| like-Sm ribonucleoprotein, core [Methanoregula boonei 6A8]
gi|153999707|gb|ABS56130.1| Like-Sm ribonucleoprotein, core [Methanoregula boonei 6A8]
Length = 78
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 32 NSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 81
+ G +G L +D Y+NI M++T E+VN + G IRGNN+L I+
Sbjct: 26 DEGRKLQGRLVAVDEYLNIHMDETIEFVNNERGRSLGTVVIRGNNILTIA 75
>gi|148698069|gb|EDL30016.1| mCG121012 [Mus musculus]
Length = 90
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%)
Query: 6 EKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 65
++ P+ +S+ R + +KLN G +GIL D +MN+ +++ E +N
Sbjct: 10 QRSRHEQSPPSRTEESLWTRKLSLKLNGGRHVQGILQGFDPFMNLVIDECVEMATSGQQN 69
Query: 66 KYGDAFIRGNNVLYISTSKRT 86
G IRGN+++ + +R
Sbjct: 70 NIGMVVIRGNSIIMLEALERV 90
>gi|284413736|ref|NP_001165120.1| small nuclear ribonucleoprotein polypeptide G [Xenopus (Silurana)
tropicalis]
gi|138519693|gb|AAI35835.1| LOC100125174 protein [Xenopus (Silurana) tropicalis]
Length = 76
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
+K LK + + +KLN G +GIL D +MN+ +++ E G +N G
Sbjct: 2 SKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECTEISGGGHQNTIGMVV 61
Query: 72 IRGNNVLYISTSKRT 86
IRGN+++ + +R
Sbjct: 62 IRGNSIIMLEALERV 76
>gi|433638868|ref|YP_007284628.1| small nuclear ribonucleoprotein [Halovivax ruber XH-70]
gi|433290672|gb|AGB16495.1| small nuclear ribonucleoprotein [Halovivax ruber XH-70]
Length = 99
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD----- 69
P D L++ G V V L +G +Y G LA D +MN+ +E+ E + GD
Sbjct: 24 PLDVLEAALGDRVRVHLKTGTEYVGELAGYDQHMNLVLEEAERTATSETTPANGDEETSS 83
Query: 70 ---AFIRGNNVLYIS 81
IRG+NV+ I+
Sbjct: 84 QDTTIIRGDNVVSIN 98
>gi|344230315|gb|EGV62200.1| Sm-like ribonucleo protein [Candida tenuis ATCC 10573]
Length = 140
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P L S + +P++V+L +G G+L D +MN+ + E + N ++ K + +IR
Sbjct: 3 PLYLLNSAKSQPILVELKNGETLNGLLTNCDSWMNLTLSEVIQTSPNAEVFTKIPEIYIR 62
Query: 74 GNNVLYISTSKRTL 87
G+++ Y+ ++T+
Sbjct: 63 GSHIKYLRLPEQTM 76
>gi|292656841|ref|YP_003536738.1| snRNP-like protein [Haloferax volcanii DS2]
gi|433417270|ref|ZP_20404659.1| snRNP-like protein [Haloferax sp. BAB2207]
gi|448290842|ref|ZP_21481987.1| snRNP-like protein [Haloferax volcanii DS2]
gi|448546215|ref|ZP_21626467.1| snRNP-like protein [Haloferax sp. ATCC BAA-646]
gi|448548214|ref|ZP_21627558.1| snRNP-like protein [Haloferax sp. ATCC BAA-645]
gi|448557401|ref|ZP_21632674.1| snRNP-like protein [Haloferax sp. ATCC BAA-644]
gi|448565365|ref|ZP_21636232.1| snRNP-like protein [Haloferax prahovense DSM 18310]
gi|448568277|ref|ZP_21637854.1| snRNP-like protein [Haloferax lucentense DSM 14919]
gi|448583315|ref|ZP_21646671.1| snRNP-like protein [Haloferax gibbonsii ATCC 33959]
gi|448600783|ref|ZP_21656162.1| snRNP-like protein [Haloferax alexandrinus JCM 10717]
gi|448606036|ref|ZP_21658615.1| snRNP-like protein [Haloferax sulfurifontis ATCC BAA-897]
gi|448622918|ref|ZP_21669567.1| snRNP-like protein [Haloferax denitrificans ATCC 35960]
gi|291371013|gb|ADE03240.1| snRNP homolog [Haloferax volcanii DS2]
gi|432200109|gb|ELK56223.1| snRNP-like protein [Haloferax sp. BAB2207]
gi|445577895|gb|ELY32315.1| snRNP-like protein [Haloferax volcanii DS2]
gi|445703058|gb|ELZ54994.1| snRNP-like protein [Haloferax sp. ATCC BAA-646]
gi|445714296|gb|ELZ66060.1| snRNP-like protein [Haloferax sp. ATCC BAA-644]
gi|445714916|gb|ELZ66674.1| snRNP-like protein [Haloferax sp. ATCC BAA-645]
gi|445715109|gb|ELZ66865.1| snRNP-like protein [Haloferax prahovense DSM 18310]
gi|445727227|gb|ELZ78841.1| snRNP-like protein [Haloferax lucentense DSM 14919]
gi|445729544|gb|ELZ81139.1| snRNP-like protein [Haloferax gibbonsii ATCC 33959]
gi|445734796|gb|ELZ86352.1| snRNP-like protein [Haloferax alexandrinus JCM 10717]
gi|445739453|gb|ELZ90960.1| snRNP-like protein [Haloferax sulfurifontis ATCC BAA-897]
gi|445753426|gb|EMA04843.1| snRNP-like protein [Haloferax denitrificans ATCC 35960]
Length = 76
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT--EEYVNG--QLKNKYGDA 70
P D L++ PV V L G Y G+LA D +MN+ +E+ E+ V G +L+
Sbjct: 5 PLDVLEASLDEPVTVLLKDGNAYFGVLAGYDQHMNVVLEEALDEDTVPGDIELEQVQDTT 64
Query: 71 FIRGNNVLYI 80
IRG+NV+ I
Sbjct: 65 IIRGDNVVTI 74
>gi|345778417|ref|XP_003431727.1| PREDICTED: uncharacterized protein LOC100682645 [Canis lupus
familiaris]
Length = 181
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + + +KLN G +GIL D +MN+ +++ E +N G IRGNN++
Sbjct: 114 LKKFMDKKLSLKLNDGRHVQGILQGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNNII 173
Query: 79 YISTSKRT 86
+ +R
Sbjct: 174 MLEGLERV 181
>gi|170111208|ref|XP_001886808.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164638166|gb|EDR02445.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 95
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV---------NGQ- 62
+ P D ++ V VKL + GIL DG+MN+ M EE + NGQ
Sbjct: 9 QEPFDLIRLSLSERVFVKLRGDRELTGILHAYDGHMNLIMSDVEETILIVDTDSVPNGQG 68
Query: 63 ---LKNKYGDAFIRGNNVLYISTSKRT 86
K K F+RG+ V+ +S RT
Sbjct: 69 LQVAKRKMEMLFVRGDGVILVSPPART 95
>gi|15920992|ref|NP_376661.1| small nuclear ribonucleoprotein [Sulfolobus tokodaii str. 7]
gi|342306290|dbj|BAK54379.1| archaeal Sm protein [Sulfolobus tokodaii str. 7]
Length = 79
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 8 GSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKY 67
G +T L G V+VKL RG L D +MN+ +E +EE ++ K
Sbjct: 2 GVNLAETAHKVLAESLGSTVLVKLKGDKIVRGTLKSYDMHMNLVLENSEEVMSDGSTRKV 61
Query: 68 GDAFIRGNNVLYIS 81
G IRG+NV+ +S
Sbjct: 62 GTIIIRGDNVILVS 75
>gi|401826734|ref|XP_003887460.1| small nuclear ribonucleoprotein [Encephalitozoon hellem ATCC
50504]
gi|395459978|gb|AFM98479.1| small nuclear ribonucleoprotein [Encephalitozoon hellem ATCC
50504]
Length = 71
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 24 GRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 81
GR V VK+ ++RG +D Y+NI++E NGQ Y FI+G+ + +I+
Sbjct: 11 GRAVKVKICDSSEFRGTSVAIDAYLNISLESVSYIQNGQEPRYYSSLFIKGSYIDHIA 68
>gi|389848158|ref|YP_006350397.1| small nuclear ribonucleoprotein (snRNP)-like protein [Haloferax
mediterranei ATCC 33500]
gi|448618366|ref|ZP_21666603.1| small nuclear ribonucleoprotein (snRNP)-like protein [Haloferax
mediterranei ATCC 33500]
gi|388245464|gb|AFK20410.1| small nuclear ribonucleoprotein (snRNP)-like protein [Haloferax
mediterranei ATCC 33500]
gi|445746737|gb|ELZ98195.1| small nuclear ribonucleoprotein (snRNP)-like protein [Haloferax
mediterranei ATCC 33500]
Length = 76
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT--EEYVNG--QLKNKYGDA 70
P D L++ PV V L G Y G+LA D +MN+ +E+ E+ V G +L+
Sbjct: 5 PLDVLEASLDEPVTVLLKDGNAYFGVLAGYDQHMNVVLEEALDEDSVPGDIELEQVQDTT 64
Query: 71 FIRGNNVLYI 80
IRG+NV+ I
Sbjct: 65 IIRGDNVVTI 74
>gi|109048997|ref|XP_001112504.1| PREDICTED: small nuclear ribonucleoprotein G-like [Macaca
mulatta]
Length = 76
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 11 TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEY-VNGQLKNKYGD 69
K + LK + + +KLN G +GIL D +MN+ +++ E ++GQ +N G
Sbjct: 1 MNKAHSPELKKFMDKKLSLKLNGGRHVQGILQGFDPFMNLVIDECVEMAISGQ-QNNIGM 59
Query: 70 AFIRGNNVLYISTSKRT 86
IRGNN++ + +R
Sbjct: 60 VVIRGNNIIMLEALERV 76
>gi|268834043|ref|NP_001161373.1| small nuclear ribonucleoprotein polypeptide G isoform 1 [Danio
rerio]
gi|268834149|ref|NP_001004660.2| small nuclear ribonucleoprotein polypeptide G isoform 2 [Danio
rerio]
Length = 76
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + + +KLN G +GIL D +MN+ ++ T E G N G IRGN+++
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVVDDTIEMAPGGQMNTIGMVVIRGNSII 68
Query: 79 YISTSKRT 86
+ +R
Sbjct: 69 MLEALERV 76
>gi|426238536|ref|XP_004013207.1| PREDICTED: small nuclear ribonucleoprotein G-like [Ovis aries]
Length = 76
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
+K LK + + +KLN G +GIL LD +MN+ +++ E +N G
Sbjct: 2 SKAHPPELKKFMDKKLSLKLNGGRHVQGILRGLDPFMNLVIDECVEMATSGQQNNIGMVV 61
Query: 72 IRGNNVLYISTSKRT 86
IRGN+++ + +R
Sbjct: 62 IRGNSIIMLEALERV 76
>gi|51858986|gb|AAH81512.1| Zgc:103688 [Danio rerio]
gi|182890240|gb|AAI65520.1| Zgc:103688 protein [Danio rerio]
Length = 76
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + + +KLN G +GIL D +MN+ ++ T E G N G IRGN+++
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVVDDTIEMAPGGQMNTIGMVVIRGNSII 68
Query: 79 YISTSKRT 86
+ +R
Sbjct: 69 MLEALERV 76
>gi|327401554|ref|YP_004342393.1| Sm ribonucleoprotein-like protein [Archaeoglobus veneficus SNP6]
gi|327317062|gb|AEA47678.1| Like-Sm ribonucleoprotein core [Archaeoglobus veneficus SNP6]
Length = 74
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 15 PADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P ++S+ G+ + V++ D G L +D YMNI M EY NG+ G+ +R
Sbjct: 3 PNQMVRSLVGKTIRVEMKGEESDLVGRLESVDDYMNIYMSNAVEYKNGEKLRNLGNLVLR 62
Query: 74 GNNVLYIS 81
GNNV+ I
Sbjct: 63 GNNVILIQ 70
>gi|308804932|ref|XP_003079778.1| glycine rich protein-common tobacco sp|Q43582|LSM4_TOBAC Probable
U6 snRNA-associated Sm-lik (ISS) [Ostreococcus tauri]
gi|116058235|emb|CAL53424.1| glycine rich protein-common tobacco sp|Q43582|LSM4_TOBAC Probable
U6 snRNA-associated Sm-lik (ISS) [Ostreococcus tauri]
Length = 779
Score = 42.4 bits (98), Expect = 0.032, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTE-EYVNGQLKNKYGDAFIR 73
P LK+ GRP++V+L +G Y G LA D +MN+ +++ +G + + ++R
Sbjct: 661 PLTLLKTSCGRPMLVELKNGETYNGTLASCDTWMNVHLKEVICTSKDGDRFWRMEECYVR 720
Query: 74 GNNVLYISTSKRTL 87
GN + Y+ L
Sbjct: 721 GNTIKYVCVPDEVL 734
>gi|116753460|ref|YP_842578.1| like-Sm ribonucleoprotein, core [Methanosaeta thermophila PT]
gi|116664911|gb|ABK13938.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
thermophila PT]
Length = 74
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDY--RGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
P ++S+ G + V++ + GIL +D Y+N+ + +T E VNG+ G +
Sbjct: 3 PNKKVQSLIGTKIQVEMKGSQRHVLEGILNSVDEYLNLHLLETVEIVNGERTRSLGSVIL 62
Query: 73 RGNNVLYISTSK 84
RGNN++ IS ++
Sbjct: 63 RGNNIILISPAE 74
>gi|302762304|ref|XP_002964574.1| hypothetical protein SELMODRAFT_81834 [Selaginella
moellendorffii]
gi|300168303|gb|EFJ34907.1| hypothetical protein SELMODRAFT_81834 [Selaginella
moellendorffii]
Length = 90
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQ----TEEYVNGQLKNKYG 68
+ P LK+ G P++V+L +G Y G L D +MNI + + ++ +G +
Sbjct: 1 QLPLSLLKTAHGHPMLVELKNGETYNGHLVSCDSWMNIHLREVICTSKASDDGDRFWRMP 60
Query: 69 DAFIRGNNVLYI 80
+ +IRGN + Y+
Sbjct: 61 ECYIRGNTIKYL 72
>gi|448377944|ref|ZP_21560567.1| Like-Sm ribonucleoprotein core [Halovivax asiaticus JCM 14624]
gi|445654917|gb|ELZ07766.1| Like-Sm ribonucleoprotein core [Halovivax asiaticus JCM 14624]
Length = 99
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD----- 69
P D L++ G V V L +G +Y G LA D +MN+ +E+ E + GD
Sbjct: 24 PLDVLEAALGDRVRVNLKTGTEYVGELAGYDQHMNLVLEEAERTATSETAPADGDEETSS 83
Query: 70 ---AFIRGNNVLYIS 81
IRG+NV+ I+
Sbjct: 84 QDTTIIRGDNVVSIN 98
>gi|302814278|ref|XP_002988823.1| hypothetical protein SELMODRAFT_128761 [Selaginella
moellendorffii]
gi|300143394|gb|EFJ10085.1| hypothetical protein SELMODRAFT_128761 [Selaginella
moellendorffii]
Length = 180
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQ----TEEYVNGQLKNKYG 68
+ P LK+ G P++V+L +G Y G L D +MNI + + ++ +G +
Sbjct: 1 QLPLSLLKTAHGHPMLVELKNGETYNGHLVSCDSWMNIHLREVICTSKASDDGDRFWRMP 60
Query: 69 DAFIRGNNVLYI 80
+ +IRGN + Y+
Sbjct: 61 ECYIRGNTIKYL 72
>gi|389583620|dbj|GAB66354.1| U6 snRNA associated Sm-like protein Lsm4 [Plasmodium cynomolgi
strain B]
Length = 153
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 8 GSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQ-TEEYVNGQLKNK 66
G P LK + +PV+V+L +G Y G L D +MN+ M+ +G K
Sbjct: 24 GKHIHHFPLTLLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWK 83
Query: 67 YGDAFIRGNNVLYISTSKRTL 87
+ ++RGN+V YI + +
Sbjct: 84 ISECYVRGNSVKYIRVQDQAI 104
>gi|146304997|ref|YP_001192313.1| Sm ribonucleoprotein-like protein [Metallosphaera sedula DSM
5348]
gi|145703247|gb|ABP96389.1| Small nuclear ribonucleoprotein, LSM family [Metallosphaera
sedula DSM 5348]
Length = 75
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+T L G V+VKL + RG+L D +MN+ + +EE + K G I
Sbjct: 3 ETAHKLLAESVGSLVLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSDGEGKKMGTIVI 62
Query: 73 RGNNVLYIS 81
RG+NV+ IS
Sbjct: 63 RGDNVILIS 71
>gi|399576624|ref|ZP_10770379.1| small nuclear ribonucleoprotein, lsm family [Halogranum salarium
B-1]
gi|399238068|gb|EJN58997.1| small nuclear ribonucleoprotein, lsm family [Halogranum salarium
B-1]
Length = 77
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA---- 70
P D L++ PV V+L G +Y G LA D +MN+ +E++ + + L +A
Sbjct: 5 PLDVLEASLNEPVTVQLKDGAEYYGTLAGYDQHMNVVLEESLDVDDDALGELDVEAVEDT 64
Query: 71 -FIRGNNVLYI 80
IRG+NV+ I
Sbjct: 65 TIIRGDNVVTI 75
>gi|449267710|gb|EMC78623.1| Small nuclear ribonucleoprotein G, partial [Columba livia]
Length = 58
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 29 VKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRT 86
VKLN G +GIL D +MN+ +++ E G +N G IRGN+++ + +R
Sbjct: 1 VKLNGGRHVQGILRGFDPFMNLVIDECVEMAPGGQQNNIGMVVIRGNSIIMLEALERV 58
>gi|225710716|gb|ACO11204.1| Small nuclear ribonucleoprotein G [Caligus rogercresseyi]
Length = 79
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
++TK LK + V +KLN+ + GIL D +MN+ +E+ E +N G
Sbjct: 2 SSTKAHPPELKKFMDKRVQLKLNASRNMEGILRGYDPFMNLVLEEGIETTKQGHRNPVGT 61
Query: 70 AFIRGNNVLYISTSKR 85
IRGN+++ + R
Sbjct: 62 VVIRGNSIVMLEAKDR 77
>gi|321461226|gb|EFX72260.1| hypothetical protein DAPPUDRAFT_189031 [Daphnia pulex]
Length = 77
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
+K LK + + +KLN G + GIL D +MN+ +++T E V KN G
Sbjct: 2 SKAHPPELKKYMDKRMSLKLNGGRNIVGILRGFDPFMNLVIDETVEEVKDGSKNNIGMVV 61
Query: 72 IRGNNVLYISTSKRTL 87
+RGN+++ + +R +
Sbjct: 62 VRGNSIIMLEALERIM 77
>gi|432864568|ref|XP_004070353.1| PREDICTED: small nuclear ribonucleoprotein G-like [Oryzias
latipes]
Length = 76
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + + +KLN G +GIL D +MN+ M+ E G +N G IRGN+++
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVMDDCLEMGPGGQQNTIGMVVIRGNSII 68
Query: 79 YISTSKRT 86
+ +R
Sbjct: 69 MLEALERV 76
>gi|19074156|ref|NP_584762.1| SMALL NUCLEAR RIBONUCLEOPROTEIN F [Encephalitozoon cuniculi
GB-M1]
gi|19068798|emb|CAD25266.1| SMALL NUCLEAR RIBONUCLEOPROTEIN F [Encephalitozoon cuniculi
GB-M1]
Length = 81
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+ P FL+ ++ R V V L G Y G L D Y NI +++ E G+ K G+ I
Sbjct: 12 ENPKQFLQRMKNRSVRVALKWGQVYEGTLVASDNYFNILLDECTER-EGEASVKIGEVSI 70
Query: 73 RGNNVLYIS 81
R NN+ I
Sbjct: 71 RCNNIKRIC 79
>gi|448578387|ref|ZP_21643822.1| snRNP-like protein [Haloferax larsenii JCM 13917]
gi|448592536|ref|ZP_21651643.1| snRNP-like protein [Haloferax elongans ATCC BAA-1513]
gi|445726928|gb|ELZ78544.1| snRNP-like protein [Haloferax larsenii JCM 13917]
gi|445731541|gb|ELZ83125.1| snRNP-like protein [Haloferax elongans ATCC BAA-1513]
Length = 75
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT-EEYVNG--QLKNKYGDAF 71
P D L+ PV V L G Y G+LA D +MN+ +E++ ++ + G +L+
Sbjct: 5 PLDVLEESLDEPVTVTLKDGSAYYGVLAGYDQHMNVVLEESLDDTMPGDIELEQVEDTTI 64
Query: 72 IRGNNVLYI 80
IRG+NV+ I
Sbjct: 65 IRGDNVVTI 73
>gi|448440431|ref|ZP_21588594.1| Like-Sm ribonucleoprotein core [Halorubrum saccharovorum DSM
1137]
gi|445690327|gb|ELZ42542.1| Like-Sm ribonucleoprotein core [Halorubrum saccharovorum DSM
1137]
Length = 80
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEY---VNGQLKNKYGDA- 70
P D L++ PV V L G Y GILA D +MN+ +E + V+ L+ ++ A
Sbjct: 5 PLDVLEASLEDPVTVHLKDGTTYYGILAGYDQHMNVVIEPESDVGDRVDDDLEGEFAVAI 64
Query: 71 ----FIRGNNVLYI 80
IRG+NV+ I
Sbjct: 65 EDTTIIRGDNVVTI 78
>gi|325968287|ref|YP_004244479.1| Sm ribonucleoprotein-like protein [Vulcanisaeta moutnovskia
768-28]
gi|323707490|gb|ADY00977.1| Like-Sm ribonucleoprotein core [Vulcanisaeta moutnovskia 768-28]
Length = 72
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 25 RPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTS 83
+ ++VKL +G + RG+L D ++N+ + TEE +N + K G IRG+ VL+IS S
Sbjct: 14 KVILVKLRNGTEIRGVLVGYDQHLNLLLTNTEE-INPKGGVKSGLMIIRGDTVLFISPS 71
>gi|402861349|ref|XP_003895059.1| PREDICTED: small nuclear ribonucleoprotein G-like [Papio anubis]
Length = 76
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 11 TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEY-VNGQLKNKYGD 69
+K LK + + +KLN G +GIL D +MN+ +++ E ++GQ +N G
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRRVQGILQGFDPFMNLVIDECVEMAISGQ-QNNIGM 59
Query: 70 AFIRGNNVLYISTSKRT 86
IRGNN++ + +R
Sbjct: 60 VVIRGNNIIMLEALERV 76
>gi|294495451|ref|YP_003541944.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
gi|292666450|gb|ADE36299.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
Length = 75
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 39 GILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 85
GIL D YMN+ +E T E V G+ + G +RGNN++ I +++
Sbjct: 28 GILKSADDYMNLHLEDTFEMVEGERQRSLGSVVLRGNNIILIVPAEK 74
>gi|195144580|ref|XP_002013274.1| GL24044 [Drosophila persimilis]
gi|198452776|ref|XP_002137534.1| GA26490 [Drosophila pseudoobscura pseudoobscura]
gi|194102217|gb|EDW24260.1| GL24044 [Drosophila persimilis]
gi|198132072|gb|EDY68092.1| GA26490 [Drosophila pseudoobscura pseudoobscura]
Length = 76
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + +++KLN G GIL D +MN+ ++ T E + KN G IRGN+++
Sbjct: 9 LKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTIEECKDKTKNNVGMVVIRGNSIV 68
Query: 79 YISTSKRT 86
+ R
Sbjct: 69 LVEALDRV 76
>gi|426248212|ref|XP_004017858.1| PREDICTED: small nuclear ribonucleoprotein G-like [Ovis aries]
Length = 76
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + + +KLN G +GIL D +MN+ +++ E +N +G IRGN+++
Sbjct: 9 LKKFMDKKLSLKLNGGRLVQGILWGFDPFMNLVIDECVEMATSGQQNNFGMVVIRGNSII 68
Query: 79 YISTSKRT 86
+ +R
Sbjct: 69 MLEALERV 76
>gi|313217530|emb|CBY38609.1| unnamed protein product [Oikopleura dioica]
gi|313236587|emb|CBY19879.1| unnamed protein product [Oikopleura dioica]
Length = 76
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK R + VK+N G G+L D +MN+ ++ EY + G IRGN+VL
Sbjct: 9 LKKFMDRKMSVKVNGGRKVEGVLRGFDPFMNLVIDDAIEYRKDNSSHTMGMCVIRGNSVL 68
Query: 79 YISTSKR 85
I +R
Sbjct: 69 MIEAMER 75
>gi|448313624|ref|ZP_21503337.1| Like-Sm ribonucleoprotein core [Natronolimnobius innermongolicus
JCM 12255]
gi|445597557|gb|ELY51631.1| Like-Sm ribonucleoprotein core [Natronolimnobius innermongolicus
JCM 12255]
Length = 75
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK---YGDAF 71
P D L++ G V V+L SG +Y G LA D +MN+ +E V G ++++
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLAGYDQHMNLVLEDVTIPVEGGVEDEAPAEDTTI 64
Query: 72 IRGNNVLYIS 81
IRG+NV+ I+
Sbjct: 65 IRGDNVVSIT 74
>gi|332796496|ref|YP_004457996.1| Sm1 protein [Acidianus hospitalis W1]
gi|332694231|gb|AEE93698.1| archaeal Sm1 protein [Acidianus hospitalis W1]
Length = 76
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+T L G V+VKL + RG+L D +MN+ + +EE + K G I
Sbjct: 3 ETAHKVLAESLGSLVLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSDGSGKKIGTIVI 62
Query: 73 RGNNVLYIS 81
RG+NV+ IS
Sbjct: 63 RGDNVILIS 71
>gi|307214549|gb|EFN89534.1| Probable small nuclear ribonucleoprotein G [Harpegnathos
saltator]
Length = 76
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + + +KLN+G GIL D +MN+ +++T E KN G IRGN+V+
Sbjct: 9 LKKYMDKKLSLKLNAGRHVTGILRGFDPFMNMVIDETVEECKDGTKNNIGMVVIRGNSVI 68
Query: 79 YISTSKR 85
+ R
Sbjct: 69 MLEALDR 75
>gi|156060469|ref|XP_001596157.1| hypothetical protein SS1G_02373 [Sclerotinia sclerotiorum 1980]
gi|154699781|gb|EDN99519.1| hypothetical protein SS1G_02373 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 223
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 15 PADFLKSIRGRPVVVKLNSG--VDYRGILACLDGYMNIAMEQTEEYVNGQLKN 65
P FL+++ V+++L G +Y+G L +D YMNI + EE+++ ++ N
Sbjct: 153 PRPFLQNLVNEEVIIRLKWGGQTEYKGKLVSIDSYMNIQLSGAEEWIDSEMTN 205
>gi|452845143|gb|EME47076.1| hypothetical protein DOTSEDRAFT_124881, partial [Dothistroma
septosporum NZE10]
Length = 126
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAF 71
+ P L + +G P++V+L +G G L D YMNI + E + +G + + +
Sbjct: 1 QLPLGLLTAAQGHPMLVELKTGETLNGHLVACDTYMNITLKEVVQTSPDGDKFFRLPECY 60
Query: 72 IRGNNVLYI 80
+RGNN+ Y+
Sbjct: 61 VRGNNIKYL 69
>gi|390939095|ref|YP_006402833.1| Sm ribonucleoprotein-like protein [Desulfurococcus fermentans DSM
16532]
gi|390192202|gb|AFL67258.1| Like-Sm ribonucleoprotein core [Desulfurococcus fermentans DSM
16532]
Length = 75
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
++T L+ G+ V++K + RG L D ++NI ++ EE ++ K G
Sbjct: 2 SETAHKILEENLGKQVLIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILSNGSTRKLGTVV 61
Query: 72 IRGNNVLYIS 81
IRG+ V+ IS
Sbjct: 62 IRGDTVVLIS 71
>gi|348673931|gb|EGZ13750.1| hypothetical protein PHYSODRAFT_347058 [Phytophthora sojae]
Length = 153
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MN+ + E +G K + +IR
Sbjct: 5 PLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIR 64
Query: 74 GNNVLYISTSKRTL 87
GN + YI L
Sbjct: 65 GNTIKYIRVPNEIL 78
>gi|303389684|ref|XP_003073074.1| U6-snRNA associated small nuclear ribonucleoprotein
[Encephalitozoon intestinalis ATCC 50506]
gi|303302218|gb|ADM11714.1| U6-snRNA associated small nuclear ribonucleoprotein
[Encephalitozoon intestinalis ATCC 50506]
Length = 71
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 24 GRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 81
G+ V VK+ G ++RG A +D Y+NI++E GQ Y FI+G+ + +I+
Sbjct: 11 GKAVKVKICDGSEFRGTSAAIDAYLNISLESVFYLQKGQEPRYYSSLFIKGSYIDHIA 68
>gi|428181287|gb|EKX50151.1| small nuclear ribonucleo protein polypeptide G [Guillardia theta
CCMP2712]
Length = 78
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + V +KLN+ + GIL D +MN+ ++ T+E V +N+ G +RGN++
Sbjct: 9 LKKYMDKRVTLKLNANRNITGILRGYDQFMNLVLDHTQEVVTPTQRNEIGMVVVRGNSIS 68
Query: 79 YISTSKRT 86
+ R
Sbjct: 69 MVECVDRV 76
>gi|169861670|ref|XP_001837469.1| hypothetical protein CC1G_01381 [Coprinopsis cinerea
okayama7#130]
gi|116501490|gb|EAU84385.1| hypothetical protein CC1G_01381 [Coprinopsis cinerea
okayama7#130]
Length = 95
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 6 EKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV------ 59
+ ++ + P D ++ V VKL + GIL DG+MN+ + EE +
Sbjct: 2 DPSASGIQEPFDLIRLSLSERVFVKLRGDREMTGILHAYDGHMNLILSDVEETIMIVDTD 61
Query: 60 --NGQ-----LKNKYGDAFIRGNNVLYISTSKRT 86
NGQ K K F+RG+ V+ +S RT
Sbjct: 62 APNGQGVVNIAKRKMDMLFVRGDGVILVSPPART 95
>gi|391346676|ref|XP_003747595.1| PREDICTED: small nuclear ribonucleoprotein G-like [Metaseiulus
occidentalis]
Length = 76
Score = 41.6 bits (96), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + + ++LN GIL D +MNI +E+ E V G + G IRGN+++
Sbjct: 9 LKKYMDKSLSLRLNGSRVVSGILRGFDPFMNIVLEEAFEEVKGGQRTPIGMTVIRGNSIV 68
Query: 79 YISTSKR 85
+ T +R
Sbjct: 69 LLETQER 75
>gi|159476634|ref|XP_001696416.1| U6 snRNA-associated Sm-like protein LSm4 [Chlamydomonas
reinhardtii]
gi|158282641|gb|EDP08393.1| U6 snRNA-associated Sm-like protein LSm4 [Chlamydomonas
reinhardtii]
Length = 134
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ + V+V+L +G Y G L D +MN+ + E +GQ K +A+IR
Sbjct: 3 PLSLLKTAQRHGVLVELKNGETYNGYLQHCDTWMNLHLSEVICTSKDGQRFFKMPEAYIR 62
Query: 74 GNNVLYISTSKRTL 87
GN + YIS + +
Sbjct: 63 GNTIKYISVPEEVV 76
>gi|195134290|ref|XP_002011570.1| GI11102 [Drosophila mojavensis]
gi|195399181|ref|XP_002058199.1| GJ15956 [Drosophila virilis]
gi|193906693|gb|EDW05560.1| GI11102 [Drosophila mojavensis]
gi|194150623|gb|EDW66307.1| GJ15956 [Drosophila virilis]
Length = 76
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + +++KLN G GIL D +MN+ ++ T E KN G IRGN+++
Sbjct: 9 LKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNSIGMVVIRGNSIV 68
Query: 79 YISTSKRT 86
+ R
Sbjct: 69 MVEALDRV 76
>gi|225711834|gb|ACO11763.1| Small nuclear ribonucleoprotein G [Lepeophtheirus salmonis]
gi|225714162|gb|ACO12927.1| Small nuclear ribonucleoprotein G [Lepeophtheirus salmonis]
gi|290562395|gb|ADD38594.1| Small nuclear ribonucleoprotein G [Lepeophtheirus salmonis]
Length = 79
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
++TK LK + V +KLN+ + GIL D +MN+ +E+ E +N G
Sbjct: 2 SSTKAHPPELKKFMDKRVQLKLNASRNMEGILRGYDPFMNLVLEEGIETTKQGHRNPVGT 61
Query: 70 AFIRGNNVLYISTSKR 85
IRGN+++ + R
Sbjct: 62 IVIRGNSIVMLEAKDR 77
>gi|296242979|ref|YP_003650466.1| LSM family small nuclear ribonucleoprotein [Thermosphaera
aggregans DSM 11486]
gi|296095563|gb|ADG91514.1| Small nuclear ribonucleoprotein, LSM family [Thermosphaera
aggregans DSM 11486]
Length = 76
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
++T L+ G V++K+ + RG L D ++NI ++ EE G K G
Sbjct: 2 SETAHKMLEENIGNIVLIKIKDDITLRGKLRSYDQHLNIVLDDVEEIGEGGSTRKLGTVV 61
Query: 72 IRGNNVLYIS 81
IRG+ V++IS
Sbjct: 62 IRGDTVVFIS 71
>gi|303279759|ref|XP_003059172.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459008|gb|EEH56304.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 129
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT-EEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MN+ +++ +G + + ++R
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVSCDTWMNVHLKEVICTSKDGDRFWRMANCYVR 62
Query: 74 GNNVLYISTSKRTL 87
GN + Y+ +
Sbjct: 63 GNTIKYVCVPDEVI 76
>gi|66811318|ref|XP_639367.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74854860|sp|Q54RX0.1|RUXG_DICDI RecName: Full=Probable small nuclear ribonucleoprotein G;
Short=snRNP-G; AltName: Full=Sm protein G; Short=Sm-G;
Short=SmG
gi|60468000|gb|EAL66011.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 85
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
L + + + +KLN GIL D +MNIA++ T E V+ K + G IRGN++L
Sbjct: 11 LTKLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPTEKYEIGMVIIRGNSIL 70
Query: 79 YIS 81
+
Sbjct: 71 LME 73
>gi|410930990|ref|XP_003978880.1| PREDICTED: small nuclear ribonucleoprotein G-like [Takifugu
rubripes]
gi|47207638|emb|CAF90891.1| unnamed protein product [Tetraodon nigroviridis]
Length = 76
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + + +KLN G +GIL D +MN+ +++T E G ++ G IRGN+++
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVVDETLEMGPGGQQSSIGMVVIRGNSII 68
Query: 79 YISTSKRT 86
+ +R
Sbjct: 69 MLEALERV 76
>gi|19113214|ref|NP_596422.1| U4/U6 x U5 tri-snRNP complex Sm snRNP core protein Smg1
[Schizosaccharomyces pombe 972h-]
gi|6094213|sp|O74966.1|RUXG_SCHPO RecName: Full=Small nuclear ribonucleoprotein G; Short=snRNP-G;
AltName: Full=Sm protein G; Short=Sm-G; Short=SmG
gi|3169092|emb|CAA19285.1| U4/U6 x U5 tri-snRNP complex Sm snRNP core protein Smg1
[Schizosaccharomyces pombe]
Length = 77
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT-EEYVNGQLKNKYGDA 70
+K A LK R V V+LN G+L D ++NI +E + EE V+G+ K K G
Sbjct: 2 SKAGAPDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGE-KVKIGSV 60
Query: 71 FIRGNNVLYIST 82
IRGN+V+ I T
Sbjct: 61 AIRGNSVIMIET 72
>gi|156841174|ref|XP_001643962.1| hypothetical protein Kpol_1001p16 [Vanderwaltozyma polyspora DSM
70294]
gi|156114593|gb|EDO16104.1| hypothetical protein Kpol_1001p16 [Vanderwaltozyma polyspora DSM
70294]
Length = 85
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNI----AMEQTEEYVNGQLKNKYG 68
+TP D LK V VKL + GIL D + NI A+E E V+G+LK+
Sbjct: 4 ETPLDLLKLNLDEKVYVKLRGARELVGILQAFDSHCNIVLSDAVETIYELVDGELKSNEK 63
Query: 69 DA---FIRGNNVLYIST 82
+ F+RG+ V I+T
Sbjct: 64 TSEMLFVRGDTVTLITT 80
>gi|194891288|ref|XP_001977464.1| GG18240 [Drosophila erecta]
gi|195479283|ref|XP_002100833.1| GE15956 [Drosophila yakuba]
gi|190649113|gb|EDV46391.1| GG18240 [Drosophila erecta]
gi|194188357|gb|EDX01941.1| GE15956 [Drosophila yakuba]
Length = 76
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + +++KLN G GIL D +MN+ ++ T E KN G IRGN+++
Sbjct: 9 LKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNSIV 68
Query: 79 YISTSKRT 86
+ R
Sbjct: 69 MVEALDRV 76
>gi|255076339|ref|XP_002501844.1| predicted protein [Micromonas sp. RCC299]
gi|226517108|gb|ACO63102.1| predicted protein [Micromonas sp. RCC299]
Length = 123
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MN+ + E +G + + ++R
Sbjct: 3 PLSLLKTSQGHPMLVELKNGETYNGHLVSCDTWMNVHLREVICTSKDGDRFWRMANCYVR 62
Query: 74 GNNVLYISTSKRTL 87
GN + YI +
Sbjct: 63 GNTIKYICVPDEVI 76
>gi|194763519|ref|XP_001963880.1| GF21254 [Drosophila ananassae]
gi|190618805|gb|EDV34329.1| GF21254 [Drosophila ananassae]
Length = 101
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + +++KLN G GIL D +MN+ ++ T E KN G IRGN+++
Sbjct: 34 LKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNSIV 93
Query: 79 YISTSKRT 86
+ R
Sbjct: 94 MVEALDRV 101
>gi|453086958|gb|EMF14999.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 138
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P L + +G P++V+L +G G L D YMNI + E + G + + ++R
Sbjct: 3 PLGLLTAAQGHPMLVELKTGETLNGHLVSCDTYMNITLKEVVQTSPEGDHFFRLAECYVR 62
Query: 74 GNNVLYI 80
GNN+ Y+
Sbjct: 63 GNNIKYL 69
>gi|448611893|ref|ZP_21662323.1| small nuclear ribonucleoprotein (snRNP)-like protein [Haloferax
mucosum ATCC BAA-1512]
gi|445742654|gb|ELZ94148.1| small nuclear ribonucleoprotein (snRNP)-like protein [Haloferax
mucosum ATCC BAA-1512]
Length = 76
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT--EEYVNG--QLKNKYGDA 70
P D L++ PV V L G Y G+LA D +MN+ +E+ E+ V G L+
Sbjct: 5 PLDVLEASLDEPVTVLLKDGNAYYGVLAGYDQHMNVVLEEALDEDAVPGDIDLEQVEDTT 64
Query: 71 FIRGNNVLYI 80
IRG+NV+ I
Sbjct: 65 IIRGDNVVTI 74
>gi|412992977|emb|CCO16510.1| U6 snRNA-associated Sm-like protein LSm4 [Bathycoccus prasinos]
Length = 122
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD----- 69
P LK+ +G ++V+L +G Y G+L D +MN+ + + NK GD
Sbjct: 3 PLSLLKTSQGHSMLVELKNGETYNGVLNACDAWMNVHLTKV------VCTNKDGDRFHEL 56
Query: 70 --AFIRGNNVLYISTSKRTL 87
FIRGN + Y+ + +
Sbjct: 57 ETCFIRGNTIKYMCVQEEII 76
>gi|319401867|ref|NP_001187842.1| small nuclear ribonucleoprotein g [Ictalurus punctatus]
gi|308324118|gb|ADO29194.1| small nuclear ribonucleoprotein g [Ictalurus punctatus]
Length = 76
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
+K LK + + +KLN G +GIL D +MN+ ++ + E G +N G
Sbjct: 2 SKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVVDDSIEISAGGQQNSIGMVV 61
Query: 72 IRGNNVLYISTSKRT 86
IRGN+++ + +R
Sbjct: 62 IRGNSIIMLEALERV 76
>gi|308321244|gb|ADO27774.1| small nuclear ribonucleoprotein g [Ictalurus furcatus]
Length = 76
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + + +KLN G +GIL D +MN+ ++ + E G +N G IRGN+++
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVVDDSIEISAGGQQNPIGMVVIRGNSII 68
Query: 79 YISTSKRT 86
+ +R
Sbjct: 69 MLEALERV 76
>gi|156098332|ref|XP_001615198.1| U6 snRNA associated Sm-like protein Lsm4 [Plasmodium vivax Sal-1]
gi|148804072|gb|EDL45471.1| U6 snRNA associated Sm-like protein Lsm4, putative [Plasmodium
vivax]
Length = 127
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQ-TEEYVNGQLKNKYGDAFIR 73
P LK + +PV+V+L +G Y G L D +MN+ M+ +G K + ++R
Sbjct: 4 PLTLLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYVR 63
Query: 74 GNNVLYISTSKRTL 87
GN+V YI + +
Sbjct: 64 GNSVKYIRVQDQAI 77
>gi|258597219|ref|XP_001347757.2| lsm4 homologue, putative [Plasmodium falciparum 3D7]
gi|254832602|gb|AAN35670.2| lsm4 homologue, putative [Plasmodium falciparum 3D7]
Length = 126
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQ---TEEYVNGQLKNKYGDAF 71
P LK + +PV+V+L +G Y G L D +MN+ M+ T + +G K + +
Sbjct: 4 PLTLLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSK--DGDKFWKISECY 61
Query: 72 IRGNNVLYISTSKRTLADG 90
+RGN++ YI + +
Sbjct: 62 VRGNSIKYIRVQDQAIEQA 80
>gi|195042091|ref|XP_001991363.1| GH12097 [Drosophila grimshawi]
gi|193901121|gb|EDV99987.1| GH12097 [Drosophila grimshawi]
Length = 76
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + +++KLN G GIL D +MN+ ++ T E KN G IRGN+++
Sbjct: 9 LKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTIEECKDNTKNSIGMVVIRGNSIV 68
Query: 79 YISTSKRT 86
+ R
Sbjct: 69 MVEALDRV 76
>gi|195447608|ref|XP_002071290.1| GK25208 [Drosophila willistoni]
gi|194167375|gb|EDW82276.1| GK25208 [Drosophila willistoni]
Length = 76
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + +++KLN G GIL D +MN+ ++ T E KN G IRGN+++
Sbjct: 9 LKKYMDKRMMLKLNGGRAVNGILRGFDPFMNVVLDDTIEECKDNTKNNIGMVVIRGNSIV 68
Query: 79 YISTSKRT 86
+ R
Sbjct: 69 MVEALDRV 76
>gi|374633102|ref|ZP_09705469.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
gi|373524586|gb|EHP69463.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
Length = 78
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+T L G V+VKL + RG+L D +MN+ + +EE + K G I
Sbjct: 6 ETAHKLLAESLGNLVLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSDGGGKKMGTIVI 65
Query: 73 RGNNVLYIS 81
RG+NV+ IS
Sbjct: 66 RGDNVILIS 74
>gi|397780467|ref|YP_006544940.1| like-Sm ribonucleoprotein, core [Methanoculleus bourgensis MS2]
gi|396938969|emb|CCJ36224.1| like-Sm ribonucleoprotein, core [Methanoculleus bourgensis MS2]
Length = 78
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 15 PADFLKSIRGRPVVVKL-NSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P + S+ +VV++ + G +G L +D ++N+ M++T EY Q G IR
Sbjct: 8 PVKKVFSLVDSKIVVEIKDDGRKLQGRLVAVDEHLNLHMDETTEYTGDQRGRTLGTVVIR 67
Query: 74 GNNVLYIS 81
GNN+L IS
Sbjct: 68 GNNILTIS 75
>gi|448300402|ref|ZP_21490403.1| Like-Sm ribonucleoprotein core [Natronorubrum tibetense GA33]
gi|445585834|gb|ELY40123.1| Like-Sm ribonucleoprotein core [Natronorubrum tibetense GA33]
Length = 75
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK---YGDAF 71
P D L++ G V V+L SG +Y G LA D +MN+ +E + G++ +
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYDGDLAGYDQHMNLVLEDVTIPLEGEVDAETPAEDTTI 64
Query: 72 IRGNNVLYIS 81
IRG+NV+ I+
Sbjct: 65 IRGDNVVSIT 74
>gi|402590109|gb|EJW84040.1| hypothetical protein WUBG_05049 [Wuchereria bancrofti]
Length = 79
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
+KT LK + V +KLN GIL D +MNI +E E + KN+ G
Sbjct: 2 SKTHPPELKKYMDKQVDLKLNGNRSVSGILRGFDPFMNIVVEDAVENLKSGDKNEIGMVV 61
Query: 72 IRGNNVLYISTSKR 85
IRGN+++ + +R
Sbjct: 62 IRGNSIVIMEPKER 75
>gi|218884605|ref|YP_002428987.1| Small nuclear ribonucleoprotein (snRNP)-like protein
[Desulfurococcus kamchatkensis 1221n]
gi|218766221|gb|ACL11620.1| Small nuclear ribonucleoprotein (snRNP) - like protein
[Desulfurococcus kamchatkensis 1221n]
Length = 75
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
++T L+ G+ V++K + RG L D ++NI ++ EE ++ K G
Sbjct: 2 SETAHKILEENLGKHVLIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILSNGSTRKLGTIV 61
Query: 72 IRGNNVLYIS 81
IRG+ V+ IS
Sbjct: 62 IRGDTVVLIS 71
>gi|353242003|emb|CCA73778.1| related to U6 snRNA-associated Sm-like protein LSm4
[Piriformospora indica DSM 11827]
Length = 126
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT-EEYVNGQLKNKYGDAFIR 73
P+ LK+ +G+P++V+L +G + G L D +MNI + + + + K + +IR
Sbjct: 3 PSSLLKAAQGKPMMVELKNGESFNGHLIDCDAFMNITLREVYQTAADSDRFWKLKEVYIR 62
Query: 74 GNNVLYISTSKRTL 87
G+ + Y+ L
Sbjct: 63 GSTIKYLQVQPALL 76
>gi|448338508|ref|ZP_21527554.1| Like-Sm ribonucleoprotein core [Natrinema pallidum DSM 3751]
gi|448345677|ref|ZP_21534566.1| Like-Sm ribonucleoprotein core [Natrinema altunense JCM 12890]
gi|445622626|gb|ELY76076.1| Like-Sm ribonucleoprotein core [Natrinema pallidum DSM 3751]
gi|445633610|gb|ELY86797.1| Like-Sm ribonucleoprotein core [Natrinema altunense JCM 12890]
Length = 75
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK---YGDAF 71
P D L++ G V V+L SG +Y G LA D +MN+ +E V G ++ +
Sbjct: 5 PLDVLEASLGDRVTVRLKSGDEYVGDLAGYDQHMNLVLEDVTIPVEGNVEEEPPAEDTTI 64
Query: 72 IRGNNVLYIS 81
IRG+NV+ I+
Sbjct: 65 IRGDNVVSIT 74
>gi|162605820|ref|XP_001713425.1| small nuclear ribonucleoprotein F [Guillardia theta]
gi|13794357|gb|AAK39734.1|AF083031_91 small nuclear ribonucleoprotein F [Guillardia theta]
Length = 73
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 28/55 (50%)
Query: 27 VVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 81
V VKL G Y GI D YMNI ++ E + Q G IR NN+L+IS
Sbjct: 15 VFVKLKWGSSYTGIFIGSDNYMNIILDSCSEVITEQNLGFLGLVLIRCNNILFIS 69
>gi|109122308|ref|XP_001087684.1| PREDICTED: small nuclear ribonucleoprotein G-like [Macaca
mulatta]
gi|354490736|ref|XP_003507512.1| PREDICTED: small nuclear ribonucleoprotein G-like [Cricetulus
griseus]
gi|344246755|gb|EGW02859.1| Small nuclear ribonucleoprotein G [Cricetulus griseus]
Length = 76
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
+K LK + + +KLN G +GIL D +MN+ +++ E +N G
Sbjct: 2 SKAHPPELKKFMDKKLSLKLNGGRHVQGILWGFDPFMNLVIDECVEMATSGQQNNIGMVV 61
Query: 72 IRGNNVLYISTSKRT 86
IRGN+++ + +R
Sbjct: 62 IRGNSIIMLEALERV 76
>gi|19074364|ref|NP_585870.1| U6-snRNA ASSOCIATED SMALL NUCLEAR RIBONUCLEOPROTEIN
[Encephalitozoon cuniculi GB-M1]
gi|19069006|emb|CAD25474.1| U6-snRNA ASSOCIATED SMALL NUCLEAR RIBONUCLEOPROTEIN
[Encephalitozoon cuniculi GB-M1]
gi|449329505|gb|AGE95777.1| U6-snRNA associated small nuclear ribonucleoprotein
[Encephalitozoon cuniculi]
Length = 71
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 24 GRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 81
GR V VK+ ++RG +D Y+NI++E +GQ Y FI+G+ + +I+
Sbjct: 11 GRTVKVKICDSSEFRGTSVAIDAYLNISLESASYLQDGQEPRYYSSLFIKGSYIDHIA 68
>gi|293345587|ref|XP_002726075.1| PREDICTED: small nuclear ribonucleoprotein G-like [Rattus
norvegicus]
Length = 76
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + + +KLN +GIL D +MN+ +++ E V +N G IRGN+++
Sbjct: 9 LKKFMDKKLSLKLNGTRRVQGILRGFDPFMNLVIDECVEMVTSGQQNIIGTVVIRGNSII 68
Query: 79 YISTSKRT 86
+ T +R
Sbjct: 69 MLETLERV 76
>gi|296488612|tpg|DAA30725.1| TPA: small nuclear ribonucleoprotein polypeptide G-like [Bos
taurus]
Length = 76
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + + +KLN G +GIL D +MN+ +++ E +N G IRGN+++
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILWGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSII 68
Query: 79 YISTSKRT 86
+ +R
Sbjct: 69 MLEALERV 76
>gi|307596528|ref|YP_003902845.1| Sm ribonucleoprotein-like protein [Vulcanisaeta distributa DSM
14429]
gi|307551729|gb|ADN51794.1| Like-Sm ribonucleoprotein core [Vulcanisaeta distributa DSM
14429]
Length = 77
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 27 VVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTS 83
++VKL +G + RG+L D ++N+ + TEE VN + K G IRG+ VL+IS +
Sbjct: 20 ILVKLRNGTEIRGVLVGYDQHLNLLLTNTEE-VNPKGGVKGGLMIIRGDTVLFISPA 75
>gi|15241028|ref|NP_198124.1| U6 snRNA-associated Sm-like protein LSm4 [Arabidopsis thaliana]
gi|332006335|gb|AED93718.1| U6 snRNA-associated Sm-like protein LSm4 [Arabidopsis thaliana]
Length = 129
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + E +G + + +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
Query: 74 GNNVLYI 80
GN + Y+
Sbjct: 63 GNTIKYL 69
>gi|21593495|gb|AAM65462.1| glycine rich protein-like [Arabidopsis thaliana]
Length = 129
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + E +G + + +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
Query: 74 GNNVLYI 80
GN + Y+
Sbjct: 63 GNTIKYL 69
>gi|330835854|ref|YP_004410582.1| like-Sm ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
gi|329567993|gb|AEB96098.1| like-Sm ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
Length = 75
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
+T L G V+VKL + RG L D +MN+ + + E N + K G I
Sbjct: 3 ETAHKLLAESVGSLVLVKLKGNKEVRGYLKSYDQHMNLVLSDSVEIQNNNDEKKMGTIVI 62
Query: 73 RGNNVLYIS 81
RG+NV+ IS
Sbjct: 63 RGDNVILIS 71
>gi|170576974|ref|XP_001893831.1| small nuclear ribonucleoprotein G [Brugia malayi]
gi|312077085|ref|XP_003141148.1| small nuclear ribonucleoprotein G [Loa loa]
gi|158599912|gb|EDP37330.1| small nuclear ribonucleoprotein G, putative [Brugia malayi]
gi|307763686|gb|EFO22920.1| small nuclear ribonucleoprotein G [Loa loa]
Length = 79
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
+KT LK + V +KLN GIL D +MNI +E E + KN+ G
Sbjct: 2 SKTHPPELKKYMDKQVDLKLNGNRSVSGILRGFDPFMNIVVEDAVENLKNGDKNEIGMVV 61
Query: 72 IRGNNVLYISTSKR 85
IRGN+++ + +R
Sbjct: 62 IRGNSIVIMEPKER 75
>gi|297812937|ref|XP_002874352.1| hypothetical protein ARALYDRAFT_326933 [Arabidopsis lyrata subsp.
lyrata]
gi|297320189|gb|EFH50611.1| hypothetical protein ARALYDRAFT_326933 [Arabidopsis lyrata subsp.
lyrata]
Length = 143
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + E +G + + +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
Query: 74 GNNVLYI 80
GN + Y+
Sbjct: 63 GNTIKYL 69
>gi|357619057|gb|EHJ71789.1| small nuclear ribonucleoprotein G [Danaus plexippus]
Length = 76
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIRGNNV 77
LK + + +KLN+G G+L D +MN+ + E EE +GQ +N G IRGN++
Sbjct: 9 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNIGMVVIRGNSI 67
Query: 78 LYISTSKR 85
+ + + R
Sbjct: 68 IMLESLDR 75
>gi|390960267|ref|YP_006424101.1| small nuclear ribonucleoprotein [Thermococcus sp. CL1]
gi|390518575|gb|AFL94307.1| small nuclear ribonucleoprotein [Thermococcus sp. CL1]
Length = 76
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
+ P D + + V+V L G ++RG L D ++N+ + +G+ +YG
Sbjct: 2 AERPLDVIHRSLDKDVLVLLKRGSEFRGRLIGYDIHLNVVLADAALIQDGEEVKRYGKIV 61
Query: 72 IRGNNVLYIS 81
IRG+NVL IS
Sbjct: 62 IRGDNVLAIS 71
>gi|146074876|ref|XP_001462629.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|398009258|ref|XP_003857829.1| hypothetical protein, conserved [Leishmania donovani]
gi|134066707|emb|CAM65167.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|322496031|emb|CBZ31103.1| hypothetical protein, conserved [Leishmania donovani]
Length = 80
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
L+S+ R V L G +YRG L LDG ++ + Q + F+RG N++
Sbjct: 5 LESLLHRSVCCHLAHGEEYRGQLEALDGTFDVVLSQCTRSRAAPRQPAEPLVFLRGENII 64
Query: 79 YI 80
YI
Sbjct: 65 YI 66
>gi|398390838|ref|XP_003848879.1| hypothetical protein MYCGRDRAFT_96235 [Zymoseptoria tritici
IPO323]
gi|339468755|gb|EGP83855.1| hypothetical protein MYCGRDRAFT_96235 [Zymoseptoria tritici
IPO323]
Length = 129
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P L + +G P++V+L +G G L D YMNI + E + +G + + ++R
Sbjct: 3 PLGLLTAAQGHPMLVELKTGETLNGHLVSCDTYMNIMLKEVVQTSPDGDKFFRLPECYVR 62
Query: 74 GNNVLYI 80
GNN+ Y+
Sbjct: 63 GNNIKYL 69
>gi|449526219|ref|XP_004170111.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Cucumis sativus]
Length = 149
Score = 41.2 bits (95), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + E +G + + +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
Query: 74 GNNVLYI 80
GN + Y+
Sbjct: 63 GNTIKYL 69
>gi|426257282|ref|XP_004022258.1| PREDICTED: small nuclear ribonucleoprotein G-like [Ovis aries]
Length = 76
Score = 41.2 bits (95), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + + +KLN G +GIL D +MN+ +++ E +N G IRGN+++
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILQGFDPFMNLVIDECVEMATSGQQNNTGMVVIRGNSII 68
Query: 79 YISTSKRT 86
+ +R
Sbjct: 69 MLEALERV 76
>gi|221055864|ref|XP_002259070.1| U6 snRNA associated Sm-like protein Ls [Plasmodium knowlesi
strain H]
gi|193809141|emb|CAQ39843.1| U6 snRNA associated Sm-like protein Ls,putative [Plasmodium
knowlesi strain H]
Length = 126
Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQ-TEEYVNGQLKNKYGDAFIR 73
P LK + +PV+V+L +G Y G L D +MN+ M+ +G K + ++R
Sbjct: 4 PLTLLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYVR 63
Query: 74 GNNVLYISTSKRTL 87
GN+V YI +
Sbjct: 64 GNSVKYIRVQDEAI 77
>gi|432112555|gb|ELK35271.1| Small nuclear ribonucleoprotein G [Myotis davidii]
Length = 76
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
+K LK + + +KLN G +GIL D +MN+ +++ E G +N G
Sbjct: 2 SKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATGGQQNNIGMVA 61
Query: 72 IRGNNVLYISTSKRT 86
I+GN+++ + +R
Sbjct: 62 IQGNSIIMLEALERV 76
>gi|357511251|ref|XP_003625914.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|357516335|ref|XP_003628456.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|355500929|gb|AES82132.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|355522478|gb|AET02932.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
Length = 150
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + E +G + + +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
Query: 74 GNNVLYI 80
GN + Y+
Sbjct: 63 GNTIKYL 69
>gi|242056887|ref|XP_002457589.1| hypothetical protein SORBIDRAFT_03g009890 [Sorghum bicolor]
gi|241929564|gb|EES02709.1| hypothetical protein SORBIDRAFT_03g009890 [Sorghum bicolor]
Length = 145
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + E +G + + +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIR 62
Query: 74 GNNVLYI 80
GN + Y+
Sbjct: 63 GNTIKYL 69
>gi|170091648|ref|XP_001877046.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648539|gb|EDR12782.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 96
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV--------- 59
S+ + P D ++ V VKL + GIL DG+MN+ M EE +
Sbjct: 5 SSGIQEPFDLIRLSLSERVFVKLRGDRELTGILHAYDGHMNLIMSDVEETILIVDTDSVP 64
Query: 60 NGQ-----LKNKYGDAFIRGNNVLYISTSKRT 86
GQ K K F+RG+ V+ +S RT
Sbjct: 65 TGQGVLQVAKRKMEMLFVRGDGVILVSPPART 96
>gi|355571227|ref|ZP_09042479.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
gi|354825615|gb|EHF09837.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
Length = 78
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 38 RGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 81
+G L +D Y+NI M+ T EYVN G IRGNN+L I
Sbjct: 32 QGRLVAVDEYLNIHMDDTTEYVNNVRGRTLGTVVIRGNNILSIQ 75
>gi|298715431|emb|CBJ28042.1| Sm-like protein LSm4 [Ectocarpus siliculosus]
Length = 165
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 13/80 (16%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT-------EEYVNGQLKNKY 67
P LK+ +G+P++V+L +G Y G L D +MNI ++ +++V K
Sbjct: 3 PLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFV------KM 56
Query: 68 GDAFIRGNNVLYISTSKRTL 87
+ ++RGN++ Y++ + L
Sbjct: 57 VEVYVRGNSIKYVTIPEEVL 76
>gi|229367628|gb|ACQ58794.1| Small nuclear ribonucleoprotein G [Anoplopoma fimbria]
Length = 76
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + + +KLN G +GIL D +MN+ ++ + E G +N G IRGN+++
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVVDDSLEMGPGGQQNTIGMVVIRGNSII 68
Query: 79 YISTSKRT 86
+ +R
Sbjct: 69 MLEALERV 76
>gi|301108373|ref|XP_002903268.1| U6 snRNA-associated Sm-like protein LSm4, putative [Phytophthora
infestans T30-4]
gi|262097640|gb|EEY55692.1| U6 snRNA-associated Sm-like protein LSm4, putative [Phytophthora
infestans T30-4]
Length = 79
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MN+ + E +G K + +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIR 62
Query: 74 GNNVLYI 80
GN + YI
Sbjct: 63 GNTIKYI 69
>gi|209877859|ref|XP_002140371.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209555977|gb|EEA06022.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 112
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT-EEYVNGQLKNKYGDAFIR 73
P ++S ++V+L +G Y G+L +DG+MN+ + +GQ + + ++R
Sbjct: 4 PLSVIRSANKHSIMVELKNGETYSGMLIGVDGFMNLVLNNVISTSKDGQRFFRMSECYLR 63
Query: 74 GNNVLYI 80
GNN+ YI
Sbjct: 64 GNNIKYI 70
>gi|297743868|emb|CBI36838.3| unnamed protein product [Vitis vinifera]
Length = 196
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + E +G + + +IR
Sbjct: 49 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 108
Query: 74 GNNVLYISTSKRTL 87
GN + Y+ +
Sbjct: 109 GNTIKYLRVPDEVI 122
>gi|226491554|ref|NP_001152235.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
gi|195654155|gb|ACG46545.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
Length = 146
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + E +G + + +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIR 62
Query: 74 GNNVLYI 80
GN + Y+
Sbjct: 63 GNTIKYL 69
>gi|452986281|gb|EME86037.1| hypothetical protein MYCFIDRAFT_130274, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 126
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAF 71
+ P L + +G P++V+L +G G L D YMN+ + E + G + + +
Sbjct: 1 QLPLGLLHAAQGHPMLVELKTGETLNGHLVSCDTYMNLTLKEVVQTSPEGDKFFRLAECY 60
Query: 72 IRGNNVLYI 80
+RGNN+ Y+
Sbjct: 61 VRGNNIKYL 69
>gi|448317324|ref|ZP_21506880.1| Like-Sm ribonucleoprotein core [Natronococcus jeotgali DSM 18795]
gi|445603844|gb|ELY57797.1| Like-Sm ribonucleoprotein core [Natronococcus jeotgali DSM 18795]
Length = 75
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK---YGDAF 71
P D L++ G V V+L SG +Y G LA D +MN+ +E + ++++
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLAGYDQHMNLVLEDVSRAADREVEDSDPVEDTTI 64
Query: 72 IRGNNVLYIS 81
IRG+NV+ I+
Sbjct: 65 IRGDNVVSIT 74
>gi|301108303|ref|XP_002903233.1| U6 snRNA-associated Sm-like protein [Phytophthora infestans
T30-4]
gi|262097605|gb|EEY55657.1| U6 snRNA-associated Sm-like protein [Phytophthora infestans
T30-4]
Length = 82
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MN+ + E +G K + +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIR 62
Query: 74 GNNVLYI 80
GN + YI
Sbjct: 63 GNTIKYI 69
>gi|255629165|gb|ACU14927.1| unknown [Glycine max]
Length = 148
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + E +G + + +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
Query: 74 GNNVLYI 80
GN + Y+
Sbjct: 63 GNTIKYL 69
>gi|4507133|ref|NP_003087.1| small nuclear ribonucleoprotein G [Homo sapiens]
gi|13385994|ref|NP_080782.1| small nuclear ribonucleoprotein G [Mus musculus]
gi|94966887|ref|NP_001035633.1| small nuclear ribonucleoprotein G [Bos taurus]
gi|205360903|ref|NP_001128557.1| small nuclear ribonucleoprotein polypeptide G [Rattus norvegicus]
gi|301172846|ref|NP_001180369.1| small nuclear ribonucleoprotein G [Macaca mulatta]
gi|356640205|ref|NP_001239260.1| small nuclear ribonucleoprotein G [Canis lupus familiaris]
gi|109461740|ref|XP_001079708.1| PREDICTED: small nuclear ribonucleoprotein G-like [Rattus
norvegicus]
gi|296223614|ref|XP_002757696.1| PREDICTED: small nuclear ribonucleoprotein G-like [Callithrix
jacchus]
gi|297667399|ref|XP_002811973.1| PREDICTED: small nuclear ribonucleoprotein G isoform 2 [Pongo
abelii]
gi|301758206|ref|XP_002914946.1| PREDICTED: small nuclear ribonucleoprotein G-like [Ailuropoda
melanoleuca]
gi|311252444|ref|XP_003125100.1| PREDICTED: small nuclear ribonucleoprotein G-like [Sus scrofa]
gi|332226773|ref|XP_003262565.1| PREDICTED: small nuclear ribonucleoprotein G isoform 1 [Nomascus
leucogenys]
gi|338714212|ref|XP_003363026.1| PREDICTED: small nuclear ribonucleoprotein G-like [Equus
caballus]
gi|344283913|ref|XP_003413715.1| PREDICTED: small nuclear ribonucleoprotein G-like [Loxodonta
africana]
gi|348566567|ref|XP_003469073.1| PREDICTED: small nuclear ribonucleoprotein G-like [Cavia
porcellus]
gi|354491761|ref|XP_003508023.1| PREDICTED: small nuclear ribonucleoprotein G-like [Cricetulus
griseus]
gi|392344154|ref|XP_003748887.1| PREDICTED: small nuclear ribonucleoprotein G-like [Rattus
norvegicus]
gi|402891180|ref|XP_003908832.1| PREDICTED: small nuclear ribonucleoprotein G [Papio anubis]
gi|403260478|ref|XP_003922698.1| PREDICTED: small nuclear ribonucleoprotein G [Saimiri boliviensis
boliviensis]
gi|410955001|ref|XP_003984147.1| PREDICTED: small nuclear ribonucleoprotein G [Felis catus]
gi|426223378|ref|XP_004005852.1| PREDICTED: small nuclear ribonucleoprotein G-like [Ovis aries]
gi|59800216|sp|P62308.1|RUXG_HUMAN RecName: Full=Small nuclear ribonucleoprotein G; Short=snRNP-G;
AltName: Full=Sm protein G; Short=Sm-G; Short=SmG
gi|59800217|sp|P62309.1|RUXG_MOUSE RecName: Full=Small nuclear ribonucleoprotein G; Short=snRNP-G;
AltName: Full=Sm protein G; Short=Sm-G; Short=SmG
gi|109894862|sp|Q3ZBL0.1|RUXG_BOVIN RecName: Full=Small nuclear ribonucleoprotein G; Short=snRNP-G;
AltName: Full=Sm protein G; Short=Sm-G; Short=SmG
gi|225734046|pdb|3CW1|G Chain G, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734055|pdb|3CW1|3 Chain 3, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734064|pdb|3CW1|4 Chain 4, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734073|pdb|3CW1|5 Chain 5, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|315583606|pdb|3PGW|G Chain G, Crystal Structure Of Human U1 Snrnp
gi|315583615|pdb|3PGW|J Chain J, Crystal Structure Of Human U1 Snrnp
gi|332639439|pdb|2Y9A|G Chain G, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639446|pdb|2Y9A|N Chain N, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639453|pdb|2Y9A|U Chain U, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639463|pdb|2Y9B|G Chain G, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639470|pdb|2Y9B|N Chain N, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639477|pdb|2Y9B|U Chain U, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639487|pdb|2Y9C|G Chain G, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639494|pdb|2Y9C|N Chain N, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639501|pdb|2Y9C|U Chain U, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639511|pdb|2Y9D|G Chain G, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639518|pdb|2Y9D|N Chain N, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639525|pdb|2Y9D|U Chain U, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|343781214|pdb|3S6N|G Chain G, Crystal Structure Of The Gemin2-Binding Domain Of Smn,
Gemin2 In Complex With Smd1D2FEG FROM HUMAN
gi|444302204|pdb|4F7U|G Chain G, Macromolecular Machine 6
gi|444302205|pdb|4F7U|J Chain J, Macromolecular Machine 6
gi|453055429|pdb|1VU2|H Chain H, The 8s Snrnp Assembly Intermediate
gi|453055437|pdb|1VU2|P Chain P, The 8s Snrnp Assembly Intermediate
gi|453055445|pdb|1VU2|X Chain X, The 8s Snrnp Assembly Intermediate
gi|453055453|pdb|1VU2|FF Chain f, The 8s Snrnp Assembly Intermediate
gi|453055461|pdb|1VU2|NN Chain n, The 8s Snrnp Assembly Intermediate
gi|453055469|pdb|1VU2|VV Chain v, The 8s Snrnp Assembly Intermediate
gi|453055473|pdb|1VU2|4 Chain 4, The 8s Snrnp Assembly Intermediate
gi|453055485|pdb|1VU3|H Chain H, The 8s Snrnp Assembly Intermediate
gi|453055493|pdb|1VU3|P Chain P, The 8s Snrnp Assembly Intermediate
gi|453055501|pdb|1VU3|X Chain X, The 8s Snrnp Assembly Intermediate
gi|453055509|pdb|1VU3|FF Chain f, The 8s Snrnp Assembly Intermediate
gi|453055517|pdb|1VU3|NN Chain n, The 8s Snrnp Assembly Intermediate
gi|453055525|pdb|1VU3|VV Chain v, The 8s Snrnp Assembly Intermediate
gi|453056017|pdb|4F77|P Chain P, The 8s Snrnp Assembly Intermediate
gi|453056025|pdb|4F77|H Chain H, The 8s Snrnp Assembly Intermediate
gi|453056033|pdb|4F77|X Chain X, The 8s Snrnp Assembly Intermediate
gi|453056041|pdb|4F77|FF Chain f, The 8s Snrnp Assembly Intermediate
gi|453056049|pdb|4F77|NN Chain n, The 8s Snrnp Assembly Intermediate
gi|453056057|pdb|4F77|VV Chain v, The 8s Snrnp Assembly Intermediate
gi|453056061|pdb|4F77|4 Chain 4, The 8s Snrnp Assembly Intermediate
gi|806566|emb|CAA59689.1| Sm protein G [Homo sapiens]
gi|12652645|gb|AAH00070.1| Small nuclear ribonucleoprotein polypeptide G [Homo sapiens]
gi|12849786|dbj|BAB28480.1| unnamed protein product [Mus musculus]
gi|12850471|dbj|BAB28732.1| unnamed protein product [Mus musculus]
gi|18490257|gb|AAH22432.1| Small nuclear ribonucleoprotein polypeptide G [Homo sapiens]
gi|20380602|gb|AAH27499.1| Small nuclear ribonucleoprotein polypeptide G [Mus musculus]
gi|30185984|gb|AAH51470.1| Small nuclear ribonucleoprotein polypeptide G [Mus musculus]
gi|42542824|gb|AAH66302.1| Small nuclear ribonucleoprotein polypeptide G [Homo sapiens]
gi|47682759|gb|AAH70166.1| Small nuclear ribonucleoprotein polypeptide G [Homo sapiens]
gi|48145953|emb|CAG33199.1| SNRPG [Homo sapiens]
gi|62420278|gb|AAX81996.1| unknown [Homo sapiens]
gi|62948132|gb|AAH94411.1| Small nuclear ribonucleoprotein polypeptide G [Mus musculus]
gi|73586825|gb|AAI03237.1| Small nuclear ribonucleoprotein polypeptide G [Bos taurus]
gi|76779243|gb|AAI06056.1| Small nuclear ribonucleoprotein polypeptide G [Homo sapiens]
gi|119620223|gb|EAW99817.1| small nuclear ribonucleoprotein polypeptide G, isoform CRA_a
[Homo sapiens]
gi|119620224|gb|EAW99818.1| small nuclear ribonucleoprotein polypeptide G, isoform CRA_a
[Homo sapiens]
gi|127799349|gb|AAH71880.1| Small nuclear ribonucleoprotein polypeptide G [Homo sapiens]
gi|148666745|gb|EDK99161.1| mCG130514, isoform CRA_a [Mus musculus]
gi|149036610|gb|EDL91228.1| rCG56468, isoform CRA_b [Rattus norvegicus]
gi|197246583|gb|AAI68750.1| Snrpg protein [Rattus norvegicus]
gi|208967440|dbj|BAG73734.1| small nuclear ribonucleoprotein polypeptide G [synthetic
construct]
gi|296477039|tpg|DAA19154.1| TPA: small nuclear ribonucleoprotein polypeptide G-like [Bos
taurus]
gi|296482417|tpg|DAA24532.1| TPA: small nuclear ribonucleoprotein G [Bos taurus]
gi|312153260|gb|ADQ33142.1| small nuclear ribonucleoprotein polypeptide G [synthetic
construct]
gi|380808500|gb|AFE76125.1| small nuclear ribonucleoprotein G [Macaca mulatta]
gi|384944568|gb|AFI35889.1| small nuclear ribonucleoprotein G [Macaca mulatta]
gi|410265648|gb|JAA20790.1| small nuclear ribonucleoprotein polypeptide G [Pan troglodytes]
gi|410348384|gb|JAA40796.1| small nuclear ribonucleoprotein polypeptide G [Pan troglodytes]
gi|431912604|gb|ELK14622.1| Small nuclear ribonucleoprotein G [Pteropus alecto]
Length = 76
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
+K LK + + +KLN G +GIL D +MN+ +++ E +N G
Sbjct: 2 SKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVV 61
Query: 72 IRGNNVLYISTSKRT 86
IRGN+++ + +R
Sbjct: 62 IRGNSIIMLEALERV 76
>gi|293335959|ref|NP_001170512.1| uncharacterized LOC100384520 [Zea mays]
gi|238005774|gb|ACR33922.1| unknown [Zea mays]
gi|413947013|gb|AFW79662.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
gi|414876859|tpg|DAA53990.1| TPA: U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
Length = 146
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + E +G + + +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIR 62
Query: 74 GNNVLYI 80
GN + Y+
Sbjct: 63 GNTIKYL 69
>gi|328862497|gb|EGG11598.1| hypothetical protein MELLADRAFT_31042 [Melampsora larici-populina
98AG31]
Length = 108
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV---NGQLKNKYGDAF 71
P L +G+P++V+L +G + G L D +MN+ M E Y+ +G+ K + +
Sbjct: 2 PLALLHGAQGKPMLVELKNGETFNGHLIQSDNFMNLTMR--EVYLTSSDGEKFWKLSECY 59
Query: 72 IRGNNVLYISTS 83
IRGN + YI +
Sbjct: 60 IRGNTIKYIRVT 71
>gi|449529475|ref|XP_004171725.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Cucumis sativus]
Length = 149
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + E +G + + +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
Query: 74 GNNVLYI 80
GN + Y+
Sbjct: 63 GNTIKYL 69
>gi|448717214|ref|ZP_21702669.1| Like-Sm ribonucleoprotein core [Halobiforma nitratireducens JCM
10879]
gi|445786018|gb|EMA36794.1| Like-Sm ribonucleoprotein core [Halobiforma nitratireducens JCM
10879]
Length = 78
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD----- 69
P D L++ G V V+L SG +Y G LA D +MN+ +E +G + ++ +
Sbjct: 5 PLDVLEASLGERVSVRLKSGDEYVGNLAGYDQHMNLVLEDVASAADGTVADEEREEPIED 64
Query: 70 -AFIRGNNVLYIS 81
IRG+NV+ I+
Sbjct: 65 TTIIRGDNVVSIT 77
>gi|77745469|gb|ABB02633.1| glycine rich protein-like [Solanum tuberosum]
gi|82623401|gb|ABB87115.1| glycine rich protein-like [Solanum tuberosum]
Length = 147
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + E +G + + +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
Query: 74 GNNVLYISTSKRTL 87
GN + Y+ +
Sbjct: 63 GNTIKYLRVPDEVI 76
>gi|357129770|ref|XP_003566534.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Brachypodium distachyon]
gi|326528247|dbj|BAJ93305.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 142
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + E +G + + +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIR 62
Query: 74 GNNVLYI 80
GN + Y+
Sbjct: 63 GNTIKYL 69
>gi|326516310|dbj|BAJ92310.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326521472|dbj|BAK00312.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 143
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + E +G + + +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIR 62
Query: 74 GNNVLYI 80
GN + Y+
Sbjct: 63 GNTIKYL 69
>gi|396081585|gb|AFN83201.1| U6-snRNA associated small nuclear ribonucleoprotein
[Encephalitozoon romaleae SJ-2008]
Length = 71
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 24 GRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 81
GR V VK+ ++RG +D Y+NI++E +GQ Y FI+G+ + +I+
Sbjct: 11 GRVVKVKICDSSEFRGTSVAVDAYLNISLESVSYIQSGQEPRHYSSLFIKGSYIDHIA 68
>gi|225450786|ref|XP_002283804.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Vitis vinifera]
Length = 149
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + E +G + + +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
Query: 74 GNNVLYISTSKRTL 87
GN + Y+ +
Sbjct: 63 GNTIKYLRVPDEVI 76
>gi|255564128|ref|XP_002523061.1| Small nuclear ribonucleoprotein SM D3, putative [Ricinus
communis]
gi|223537623|gb|EEF39246.1| Small nuclear ribonucleoprotein SM D3, putative [Ricinus
communis]
Length = 147
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + E +G + + +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
Query: 74 GNNVLYISTSKRTL 87
GN + Y+ +
Sbjct: 63 GNTIKYLRVPDEVI 76
>gi|50413178|ref|XP_457218.1| DEHA2B05918p [Debaryomyces hansenii CBS767]
gi|49652883|emb|CAG85213.1| DEHA2B05918p [Debaryomyces hansenii CBS767]
Length = 165
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT-EEYVNGQLKNKYGDAFIR 73
P L S + +P++V+L +G G L D +MN+ ++ + NG+ K + +IR
Sbjct: 3 PLYLLTSAKNQPILVELKNGESLNGQLVNCDSWMNLTLKDVIQSSSNGETFVKLPECYIR 62
Query: 74 GNNVLYISTSKRTL 87
GN++ Y+ + +
Sbjct: 63 GNHIKYLRLPEEIM 76
>gi|395645347|ref|ZP_10433207.1| Like-Sm ribonucleoprotein core [Methanofollis liminatans DSM
4140]
gi|395442087|gb|EJG06844.1| Like-Sm ribonucleoprotein core [Methanofollis liminatans DSM
4140]
Length = 78
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 32 NSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 81
+ G +G L +D ++N+ ME+T EY Q G IRGNN+L IS
Sbjct: 26 DEGRKLQGRLVAVDEHLNLHMEETIEYTGEQRGRSLGTVVIRGNNILTIS 75
>gi|356500280|ref|XP_003518961.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Glycine max]
Length = 149
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + E +G + + +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
Query: 74 GNNVLYI 80
GN + Y+
Sbjct: 63 GNTIKYL 69
>gi|327291504|ref|XP_003230461.1| PREDICTED: small nuclear ribonucleoprotein G-like, partial
[Anolis carolinensis]
Length = 65
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 29 VKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRT 86
+KLN G +GIL D +MN+ +++ E G +N G IRGN+++ + +R
Sbjct: 8 LKLNGGRHVQGILRGFDPFMNLVIDECVEMAPGGQQNNIGMVVIRGNSIIMLEALERV 65
>gi|356572732|ref|XP_003554520.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Glycine max]
Length = 148
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + E +G + + +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
Query: 74 GNNVLYISTSKRTL 87
GN + Y+ +
Sbjct: 63 GNTIKYLRVPDEVI 76
>gi|225437330|ref|XP_002264738.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Vitis vinifera]
Length = 150
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + E +G + + +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
Query: 74 GNNVLYISTSKRTL 87
GN + Y+ +
Sbjct: 63 GNTIKYLRVPDEVI 76
>gi|154331283|ref|XP_001561460.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134058777|emb|CAM36447.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 80
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
L+S+ +PV L G +YRG L LDG ++ + + + F+RG N++
Sbjct: 5 LESLLHQPVCCHLAHGEEYRGQLEALDGSFDVVLSRCTRSRASPRQPAEPLVFVRGENII 64
Query: 79 YI 80
YI
Sbjct: 65 YI 66
>gi|440900234|gb|ELR51419.1| Small nuclear ribonucleoprotein G [Bos grunniens mutus]
Length = 76
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + V +KLN G +GIL D +MN+ +++ E +N G IRGN+++
Sbjct: 9 LKKFMDKKVSLKLNGGRHVQGILQGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSII 68
Query: 79 YISTSKRT 86
+ ++
Sbjct: 69 MLEALEQV 76
>gi|257076617|ref|ZP_05570978.1| snRNP Sm-like protein [Ferroplasma acidarmanus fer1]
Length = 71
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P L+ + V + L G L D YMN+ ++ EE NG+++ K G IRG
Sbjct: 5 PMKMLEENLNKKVTLLLKDNRSLVGTLVGYDEYMNMTLDDAEE--NGEVQRKIGKVIIRG 62
Query: 75 NNVLYIST 82
+NV+ I+T
Sbjct: 63 SNVVRITT 70
>gi|255714250|ref|XP_002553407.1| KLTH0D16082p [Lachancea thermotolerans]
gi|238934787|emb|CAR22969.1| KLTH0D16082p [Lachancea thermotolerans CBS 6340]
Length = 81
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNI----AMEQTEEYVNGQLKNKYGD 69
TP D LK V VKL + G+L D + NI A E E V+G+LK+
Sbjct: 3 TPLDLLKLNLDEKVFVKLRGAREMTGVLQAFDSHCNIVLSNATETIYELVDGELKSSTKG 62
Query: 70 A---FIRGNNVLYIST 82
+ F+RG++V I+T
Sbjct: 63 SEMVFVRGDSVTLITT 78
>gi|218187914|gb|EEC70341.1| hypothetical protein OsI_01238 [Oryza sativa Indica Group]
Length = 147
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + E +G + + +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIR 62
Query: 74 GNNVLYISTSKRTL 87
GN + Y+ +
Sbjct: 63 GNTIKYLRVPDEVI 76
>gi|383420999|gb|AFH33713.1| small nuclear ribonucleoprotein G [Macaca mulatta]
Length = 76
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K + LK + + +KLN G +GIL D +MN+ +++ E +N G I
Sbjct: 3 KAHSPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVI 62
Query: 73 RGNNVLYISTSKRT 86
RGN+++ + +R
Sbjct: 63 RGNSIIMLEALERV 76
>gi|224064436|ref|XP_002301475.1| predicted protein [Populus trichocarpa]
gi|222843201|gb|EEE80748.1| predicted protein [Populus trichocarpa]
Length = 150
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + E +G + + +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
Query: 74 GNNVLYISTSKRTL 87
GN + Y+ +
Sbjct: 63 GNTIKYLRVPDEVI 76
>gi|115435742|ref|NP_001042629.1| Os01g0256900 [Oryza sativa Japonica Group]
gi|12230291|sp|Q9LGE6.1|LSM4_ORYSJ RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4
gi|9711887|dbj|BAB07978.1| putative glycine-rich protein 2 [Oryza sativa Japonica Group]
gi|108792648|dbj|BAE95809.1| putative glycine-rich protein 2 [Oryza sativa Japonica Group]
gi|113532160|dbj|BAF04543.1| Os01g0256900 [Oryza sativa Japonica Group]
gi|215704752|dbj|BAG94780.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222618133|gb|EEE54265.1| hypothetical protein OsJ_01157 [Oryza sativa Japonica Group]
Length = 147
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + E +G + + +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIR 62
Query: 74 GNNVLYISTSKRTL 87
GN + Y+ +
Sbjct: 63 GNTIKYLRVPDEVI 76
>gi|403301993|ref|XP_003941654.1| PREDICTED: small nuclear ribonucleoprotein G-like [Saimiri
boliviensis boliviensis]
Length = 76
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
+K LK + + +KLN G +GIL D +MN+ +++ E +N G
Sbjct: 2 SKAHPPELKKFMDKKLSLKLNGGRHVQGILWGFDPFMNLVIDECVEMATSGQQNNIGMVV 61
Query: 72 IRGNNVLYISTSKRT 86
IRGN ++ + +R
Sbjct: 62 IRGNGIIMLEALERV 76
>gi|325968481|ref|YP_004244673.1| Like-Sm ribonucleoprotein, core [Vulcanisaeta moutnovskia 768-28]
gi|323707684|gb|ADY01171.1| Like-Sm ribonucleoprotein, core [Vulcanisaeta moutnovskia 768-28]
Length = 81
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN---KYGD 69
+ P L+ + G+ V ++L + RG+L D MN+ +++ EE ++ + +N KYG
Sbjct: 5 QQPMKTLQKLVGKHVTIRLKNNKVLRGVLVNYDDCMNLIIDEGEE-LDQKGENVVVKYGR 63
Query: 70 AFIRGNNVLYISTSKRTL 87
IRG VLYI TS+ T+
Sbjct: 64 LVIRGTQVLYI-TSEETM 80
>gi|397773764|ref|YP_006541310.1| Like-Sm ribonucleoprotein core [Natrinema sp. J7-2]
gi|397682857|gb|AFO57234.1| Like-Sm ribonucleoprotein core [Natrinema sp. J7-2]
Length = 135
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG---DAF 71
P D L++ G V V+L SG +Y G LA D +MN+ +E V G ++ +
Sbjct: 65 PLDVLEASLGDRVTVRLKSGDEYVGDLAGYDQHMNLVLEDVMIPVEGNVEEEPPAEDTTI 124
Query: 72 IRGNNVLYIS 81
IRG+NV+ I+
Sbjct: 125 IRGDNVVSIT 134
>gi|307594229|ref|YP_003900546.1| Sm ribonucleoprotein core-like protein [Vulcanisaeta distributa
DSM 14429]
gi|307549430|gb|ADN49495.1| Sm ribonucleoprotein core-like protein [Vulcanisaeta distributa
DSM 14429]
Length = 81
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN---KYGD 69
+ P L+ + G+ V ++L + RGIL D MN+ +++ EE ++ + +N KYG
Sbjct: 5 QQPMKTLQKLVGKHVTIRLKNNKVLRGILVNYDDCMNLIIDEGEE-LDQKGENVVVKYGR 63
Query: 70 AFIRGNNVLYISTSK 84
IRG +LYI++ +
Sbjct: 64 LVIRGTQILYITSEE 78
>gi|444320755|ref|XP_004181034.1| hypothetical protein TBLA_0E04630 [Tetrapisispora blattae CBS
6284]
gi|387514077|emb|CCH61515.1| hypothetical protein TBLA_0E04630 [Tetrapisispora blattae CBS
6284]
Length = 82
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNI----AMEQTEEYVNGQLKNKYGDA 70
P D LK + VKL + GIL D + NI A+E E V+G+LK+ ++
Sbjct: 6 PLDLLKLNLDEKIYVKLRGARELSGILQAFDSHCNIVLSDAIETKYELVDGELKSTERNS 65
Query: 71 ---FIRGNNVLYISTSK 84
F+RG++V I+T +
Sbjct: 66 EMLFVRGDSVTLITTEE 82
>gi|448341319|ref|ZP_21530281.1| Like-Sm ribonucleoprotein core [Natrinema gari JCM 14663]
gi|445628366|gb|ELY81674.1| Like-Sm ribonucleoprotein core [Natrinema gari JCM 14663]
Length = 75
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK---YGDAF 71
P D L++ G V V+L SG +Y G LA D +MN+ +E V G ++ +
Sbjct: 5 PLDVLEASLGDRVTVRLKSGDEYVGDLAGYDQHMNLVLEDVMIPVEGNVEEEPPAEDTTI 64
Query: 72 IRGNNVLYIS 81
IRG+NV+ I+
Sbjct: 65 IRGDNVVSIT 74
>gi|156405713|ref|XP_001640876.1| predicted protein [Nematostella vectensis]
gi|156228012|gb|EDO48813.1| predicted protein [Nematostella vectensis]
Length = 77
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
+K LK + + +KLN G G+L D +MN+ ++ E V+G K+ G
Sbjct: 2 SKAHPPELKKYMDKKLSLKLNGGRHVSGVLRGYDPFMNLVLDDAVENVSGNEKHAIGMVV 61
Query: 72 IRGNNVLYISTSKRTL 87
IRGN+++ + R L
Sbjct: 62 IRGNSIVTMEALDRVL 77
>gi|224131146|ref|XP_002321012.1| predicted protein [Populus trichocarpa]
gi|222861785|gb|EEE99327.1| predicted protein [Populus trichocarpa]
Length = 151
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + E +G + + +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRTPECYIR 62
Query: 74 GNNVLYI 80
GN + Y+
Sbjct: 63 GNTIKYL 69
>gi|341581440|ref|YP_004761932.1| small nuclear ribonucleoprotein [Thermococcus sp. 4557]
gi|340809098|gb|AEK72255.1| small nuclear ribonucleoprotein [Thermococcus sp. 4557]
Length = 76
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
+ P D + + V+V L G ++RG L D ++N+ + G+ +YG
Sbjct: 2 AERPLDVIHKSLDKDVLVLLKRGSEFRGRLIGYDIHLNVVLADAALIQEGEEVKRYGKIV 61
Query: 72 IRGNNVLYIS 81
IRG+NVL IS
Sbjct: 62 IRGDNVLAIS 71
>gi|389592337|ref|XP_003721536.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|321438067|emb|CBZ11819.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 80
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
L+S+ R V L G +YRG L LDG ++ + Q + F+RG N++
Sbjct: 5 LESLLHRSVCCHLAHGEEYRGQLEALDGTFDVVLSQCTRSRAAPKQPAEPLVFLRGENII 64
Query: 79 YI 80
YI
Sbjct: 65 YI 66
>gi|384489888|gb|EIE81110.1| hypothetical protein RO3G_05815 [Rhizopus delemar RA 99-880]
Length = 129
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P L + G P++V+L SG + G L D +MN+ + E + G + + +IR
Sbjct: 3 PLSLLHTAAGHPMLVELKSGETFNGHLVNCDNWMNLTLREVIQTSPEGDKFWRLPECYIR 62
Query: 74 GNNVLYISTSK 84
GN + Y++ +
Sbjct: 63 GNTIKYLNVPE 73
>gi|296089694|emb|CBI39513.3| unnamed protein product [Vitis vinifera]
Length = 162
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + E +G + + +IR
Sbjct: 16 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 75
Query: 74 GNNVLYISTSKRTL 87
GN + Y+ +
Sbjct: 76 GNTIKYLRVPDEVI 89
>gi|412993679|emb|CCO14190.1| small nuclear ribonucleoprotein LSM2 [Bathycoccus prasinos]
Length = 94
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 18 FLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT---EEYVNGQLKNKYGDAFIRG 74
F K++ G+ + V+L + ++ RG L +D Y+NI +E +E +K+ D F+RG
Sbjct: 6 FFKTLVGKQITVELKNDLEIRGTLVSVDQYLNIKLESVSVLDEEKYPHMKS-VRDCFVRG 64
Query: 75 NNVLYISTSKRTL 87
+ V Y+ + ++
Sbjct: 65 SVVRYVQPPEESV 77
>gi|389860339|ref|YP_006362578.1| LSM family small nuclear ribonucleoprotein [Thermogladius
cellulolyticus 1633]
gi|388525242|gb|AFK50440.1| LSM family small nuclear ribonucleoprotein [Thermogladius
cellulolyticus 1633]
Length = 78
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 18 FLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEY-VNGQLKNKYGDAFIRGNN 76
L+S + V+V++ G +Y G L +D MN+ + EE +G+ +YG A IRG++
Sbjct: 1 MLRSAINQIVLVRVKDGNEYIGNLEMVDPTMNVVLSDCEETSADGKPIARYGKALIRGSH 60
Query: 77 VLYISTS 83
++++S +
Sbjct: 61 IVFVSVN 67
>gi|168013104|ref|XP_001759241.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689554|gb|EDQ75925.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 181
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAF 71
+ P LK+ +G P++V+L +G Y G L D +MNI + E +G + + +
Sbjct: 1 QLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
Query: 72 IRGNNVLYI 80
IRGN + Y+
Sbjct: 61 IRGNTIKYL 69
>gi|323452593|gb|EGB08466.1| hypothetical protein AURANDRAFT_25994 [Aureococcus
anophagefferens]
Length = 139
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT-EEYVNGQLKNKYGDAFIR 73
P L + +G+P++++L +G Y G L D +MN+ +E+ +G K + +IR
Sbjct: 3 PLSLLTTAKGQPMLIELKNGDTYNGRLVSADTWMNVNLEEVICTSRDGDRFWKLKECYIR 62
Query: 74 GNNVLYI 80
GN++ Y+
Sbjct: 63 GNSIKYL 69
>gi|414876860|tpg|DAA53991.1| TPA: hypothetical protein ZEAMMB73_426325 [Zea mays]
Length = 172
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + E +G + + +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIR 62
Query: 74 GNNVLYI 80
GN + Y+
Sbjct: 63 GNTIKYL 69
>gi|448329423|ref|ZP_21518722.1| Like-Sm ribonucleoprotein core [Natrinema versiforme JCM 10478]
gi|445613929|gb|ELY67615.1| Like-Sm ribonucleoprotein core [Natrinema versiforme JCM 10478]
Length = 75
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK---YGDAF 71
P D L++ G V V+L SG +Y G LA D +MN+ +E V G ++ +
Sbjct: 5 PLDVLEASLGERVSVRLKSGDEYIGELAGYDQHMNLVLEDVTIPVEGGVEEETPVEDTTI 64
Query: 72 IRGNNVLYIS 81
IRG+NV+ I+
Sbjct: 65 IRGDNVVSIT 74
>gi|47026939|gb|AAT08690.1| small nuclear ribonucleoprotein polypeptide G [Hyacinthus
orientalis]
Length = 96
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 5 GEKGSATTKTPADFLKSIRG-RPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQL 63
+A+ + PA LK + G + +KLN+ G L D +MN+ ++ T E VNG
Sbjct: 13 AHHAAASGQPPA--LKQVHGTSKLQIKLNANRVVVGTLRGFDQFMNLVIDNTME-VNGND 69
Query: 64 KNKYGDAFIRGNNVLYIS 81
KN G IRGN+V+ I
Sbjct: 70 KNDIGMVVIRGNSVVMIE 87
>gi|18860007|ref|NP_573139.1| small ribonucleoprotein particle protein SmG, isoform A
[Drosophila melanogaster]
gi|221372123|ref|NP_001138209.1| small ribonucleoprotein particle protein SmG, isoform B
[Drosophila melanogaster]
gi|195351500|ref|XP_002042272.1| GM13382 [Drosophila sechellia]
gi|195567140|ref|XP_002107128.1| GD15738 [Drosophila simulans]
gi|29428065|sp|Q9VXE0.1|RUXG_DROME RecName: Full=Probable small nuclear ribonucleoprotein G;
Short=snRNP-G; AltName: Full=Sm protein G; Short=Sm-G;
Short=SmG
gi|7293253|gb|AAF48634.1| small ribonucleoprotein particle protein SmG, isoform A
[Drosophila melanogaster]
gi|17944563|gb|AAL48169.1| RH35475p [Drosophila melanogaster]
gi|194124115|gb|EDW46158.1| GM13382 [Drosophila sechellia]
gi|194204529|gb|EDX18105.1| GD15738 [Drosophila simulans]
gi|220901796|gb|ACL82939.1| small ribonucleoprotein particle protein SmG, isoform B
[Drosophila melanogaster]
gi|220952224|gb|ACL88655.1| SmG-PA [synthetic construct]
Length = 76
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P + K + R +++KLN G GIL D +MN+ ++ T E KN G IRG
Sbjct: 6 PPEVKKYMDKR-MMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRG 64
Query: 75 NNVLYISTSKRT 86
N+++ + R
Sbjct: 65 NSIVMVEALDRV 76
>gi|109112083|ref|XP_001087555.1| PREDICTED: small nuclear ribonucleoprotein G-like [Macaca
mulatta]
Length = 76
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + + KLN G +GIL D +MN+ +++ E +N G IRGN+++
Sbjct: 9 LKKFMDKKLSSKLNGGRHVQGILWAFDPFMNLVIDEYVEMATSGQQNNIGMVVIRGNSII 68
Query: 79 YISTSKRT 86
+ +R
Sbjct: 69 MLEALERV 76
>gi|83769760|dbj|BAE59895.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 133
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAF 71
+ P L + +G P++V+L +G G LA D +MN+ + E + G + + +
Sbjct: 13 RLPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVY 72
Query: 72 IRGNNVLYISTSKRTL 87
IRGNN+ Y+ + +
Sbjct: 73 IRGNNIKYLRIPEEII 88
>gi|330827552|ref|XP_003291838.1| hypothetical protein DICPUDRAFT_39635 [Dictyostelium purpureum]
gi|325077961|gb|EGC31640.1| hypothetical protein DICPUDRAFT_39635 [Dictyostelium purpureum]
Length = 78
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 29 VKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 81
VKLN +GIL D +MNIA++ T E V+ K + G IRGN+++ +
Sbjct: 21 VKLNGNRTVQGILRGFDTFMNIALKDTVEVVSPTEKYEIGMVLIRGNSIILME 73
>gi|321468738|gb|EFX79721.1| hypothetical protein DAPPUDRAFT_304272 [Daphnia pulex]
Length = 153
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 37/64 (57%)
Query: 18 FLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNV 77
L+++ GR VV+L + + +G+++ +DG+MN++++ N + + F++ N+
Sbjct: 20 LLQALEGRVAVVELRNEMAVKGLISQVDGFMNVSLQNATVQGNDDQHYHFEEFFVKARNI 79
Query: 78 LYIS 81
Y+
Sbjct: 80 RYVQ 83
>gi|20093660|ref|NP_613507.1| small nuclear ribonucleoprotein (snRNP)-like protein
[Methanopyrus kandleri AV19]
gi|19886535|gb|AAM01437.1| Small nuclear ribonucleoprotein (snRNP) homolog [Methanopyrus
kandleri AV19]
Length = 73
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P D L+ V+V+L +G RG L DG++N+ ++ E ++ + + G IRG
Sbjct: 3 PHDCLRDFLDDIVIVELKTGKTLRGRLVSFDGHLNLVLDDCVE-IDEDSEVRLGRVLIRG 61
Query: 75 NNVLYISTSK 84
++V IS ++
Sbjct: 62 DSVTLISPAE 71
>gi|68064470|ref|XP_674219.1| U6 snRNA associated Sm-like protein Ls; U6 snRNA associated
Sm-like protein LsM4 [Plasmodium berghei strain ANKA]
gi|56492635|emb|CAH99966.1| U6 snRNA associated Sm-like protein Ls; U6 snRNA associated
Sm-like protein LsM4, putative [Plasmodium berghei]
Length = 130
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQ-TEEYVNGQLKNKYGDAFIR 73
P LK + +PV+V+L +G Y G L D +MN+ M+ +G K + ++R
Sbjct: 2 PLTLLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYVR 61
Query: 74 GNNVLYISTSKRTLADG 90
G++V YI + + +
Sbjct: 62 GSSVKYIRVQDQAIENA 78
>gi|336253861|ref|YP_004596968.1| Like-Sm ribonucleoprotein core [Halopiger xanaduensis SH-6]
gi|335337850|gb|AEH37089.1| Like-Sm ribonucleoprotein core [Halopiger xanaduensis SH-6]
Length = 75
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK---YGDAF 71
P D L++ G V V+L SG +Y G L D +MN+ +E V G ++ +
Sbjct: 5 PLDILEASLGERVTVRLKSGDEYVGELTGYDQHMNLVLEDATIPVGGTVEEEEPVEDTTI 64
Query: 72 IRGNNVLYIS 81
IRG+NV+ I+
Sbjct: 65 IRGDNVVSIT 74
>gi|440907817|gb|ELR57914.1| hypothetical protein M91_09610 [Bos grunniens mutus]
Length = 247
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 29 VKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 85
VKLN G +GIL D +MN+ +++ E +N G IRGN+++ + +R
Sbjct: 190 VKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALER 246
>gi|115383910|ref|XP_001208502.1| hypothetical protein ATEG_01137 [Aspergillus terreus NIH2624]
gi|114196194|gb|EAU37894.1| hypothetical protein ATEG_01137 [Aspergillus terreus NIH2624]
Length = 119
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P L + +G P++V+L +G G LA D +MN+ + E + G K + +IR
Sbjct: 3 PLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFKLPEVYIR 62
Query: 74 GNNVLYISTSKRTL 87
GNN+ Y+ + +
Sbjct: 63 GNNIKYLRIPEEIV 76
>gi|414876858|tpg|DAA53989.1| TPA: hypothetical protein ZEAMMB73_426325, partial [Zea mays]
Length = 112
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + E +G + + +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIR 62
Query: 74 GNNVLYI 80
GN + Y+
Sbjct: 63 GNTIKYL 69
>gi|147768838|emb|CAN75888.1| hypothetical protein VITISV_023640 [Vitis vinifera]
Length = 3804
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTE-EYVNGQLKNKYGDAF 71
K P LK+ +G P++V+L +G Y G L D +MNI + + +G + + +
Sbjct: 3655 KLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 3714
Query: 72 IRGNNVLYI 80
IRGN + Y+
Sbjct: 3715 IRGNTIKYL 3723
>gi|242018957|ref|XP_002429935.1| membrane-associated protein, putative [Pediculus humanus
corporis]
gi|212514981|gb|EEB17197.1| membrane-associated protein, putative [Pediculus humanus
corporis]
Length = 76
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + + +KLN G GIL D +MN+ ++++ E N G IRGN+V+
Sbjct: 9 LKKFMDKKLALKLNGGRQVNGILRGFDPFMNLVIDESVEICKNGTHNNIGMVVIRGNSVV 68
Query: 79 YISTSKRT 86
+ R
Sbjct: 69 MLEALDRV 76
>gi|167043902|gb|ABZ08590.1| putative LSM domain protein [uncultured marine crenarchaeote
HF4000_APKG3H9]
gi|167044597|gb|ABZ09270.1| putative LSM domain protein [uncultured marine crenarchaeote
HF4000_APKG7F11]
Length = 76
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 25 RPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 81
+ V++KL RG L D +MN+ ++Q EE ++ N G +RG+NV+ IS
Sbjct: 16 KTVLIKLKGNKTIRGNLLGFDQHMNLLLDQAEEILSDGDSNSLGSLVVRGDNVVMIS 72
>gi|426198547|gb|EKV48473.1| hypothetical protein AGABI2DRAFT_203319 [Agaricus bisporus var.
bisporus H97]
Length = 93
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV----------NGQ 62
+ P D ++ V VKL + GIL DG+MN+ + EE V
Sbjct: 10 QEPFDLIRLSLSERVFVKLRGDRELSGILHAYDGHMNLILSDVEETVMIVDTESNQTTNY 69
Query: 63 LKNKYGDAFIRGNNVLYISTSKRT 86
K K+ F+RG+ V+ +S R+
Sbjct: 70 AKRKWEMLFVRGDGVILVSPPSRS 93
>gi|332376801|gb|AEE63540.1| unknown [Dendroctonus ponderosae]
Length = 76
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + + +KLN G GIL D +MN+ ++++ E KN G IRGN+++
Sbjct: 9 LKKFMDKKLCLKLNGGRQVTGILRGFDPFMNLVVDESIEECRDGTKNNIGMVVIRGNSIV 68
Query: 79 YISTSKR 85
+ R
Sbjct: 69 MLEALDR 75
>gi|449443839|ref|XP_004139683.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Cucumis sativus]
Length = 88
Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + E +G + + +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
Query: 74 GNNVLYI 80
GN + Y+
Sbjct: 63 GNTIKYL 69
>gi|223478369|ref|YP_002582798.1| snRNP Sm-like protein [Thermococcus sp. AM4]
gi|240103795|ref|YP_002960104.1| small nuclear ribonucleoprotein [Thermococcus gammatolerans EJ3]
gi|259495715|sp|C5A1H1.1|RUXX_THEGJ RecName: Full=Putative snRNP Sm-like protein
gi|214033595|gb|EEB74422.1| hypothetical snRNP Sm-like protein [Thermococcus sp. AM4]
gi|239911349|gb|ACS34240.1| Small nuclear ribonucleoprotein (snRNP)-like protein, Sm-like
protein [Thermococcus gammatolerans EJ3]
Length = 76
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
+ P D + + V+V L G ++RG L D ++N+ + + +G++ YG
Sbjct: 2 AERPLDVIHRSLDKDVLVLLKRGGEFRGKLIGYDIHLNVVLAGADYIQDGEVVKSYGKIV 61
Query: 72 IRGNNVLYIS 81
+RG+NVL IS
Sbjct: 62 VRGDNVLAIS 71
>gi|348540852|ref|XP_003457901.1| PREDICTED: small nuclear ribonucleoprotein G-like [Oreochromis
niloticus]
Length = 76
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
LK + + +KLN G +GIL D +MN+ ++ E G +N G IRGN+++
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVVDDCLEMGPGGQQNTIGMVVIRGNSII 68
Query: 79 YISTSKRT 86
+ +R
Sbjct: 69 MLEALERV 76
>gi|357519603|ref|XP_003630090.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|355524112|gb|AET04566.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
Length = 161
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + E +G + + +IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62
Query: 74 GNNVLYI 80
GN + Y+
Sbjct: 63 GNTIKYL 69
>gi|409050337|gb|EKM59814.1| hypothetical protein PHACADRAFT_170423 [Phanerochaete carnosa
HHB-10118-sp]
Length = 95
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV--------- 59
SA + P D ++ V VKL + GIL DG+MN+ + EE +
Sbjct: 4 SAAIQEPFDLIRLSLSERVFVKLRGDRELSGILHAYDGHMNLILSDVEETILIVDQIDGA 63
Query: 60 -NGQ-----LKNKYGDAFIRGNNVLYISTSKR 85
GQ K K F+RG+ V+ +S R
Sbjct: 64 GEGQQTVNMAKRKMEMLFVRGDGVILVSPPSR 95
>gi|257076591|ref|ZP_05570952.1| small nuclear ribonucleoprotein [Ferroplasma acidarmanus fer1]
Length = 84
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 38/73 (52%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S P + LK+ + +++ + Y GIL D YMN+ ++ E +N + K +
Sbjct: 7 SGYVPKPMETLKNSLEKNIMIDVKGNRMYSGILEGYDIYMNLVLKNATETINNENKGTFS 66
Query: 69 DAFIRGNNVLYIS 81
+RG+N++++S
Sbjct: 67 MMLLRGDNIIFVS 79
>gi|12230258|sp|Q43582.1|LSM4_TOBAC RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4;
AltName: Full=Glycine-rich protein 10; Short=GRP 10
gi|790473|emb|CAA58702.1| unnamed protein product [Nicotiana tabacum]
Length = 146
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P LK+ +G P++V+L +G Y G L D +MNI + E +G + + ++R
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYVR 62
Query: 74 GNNVLYI 80
GN + Y+
Sbjct: 63 GNTIKYL 69
>gi|433590264|ref|YP_007279760.1| small nuclear ribonucleoprotein [Natrinema pellirubrum DSM 15624]
gi|448332329|ref|ZP_21521573.1| Sm ribonucleoprotein-like protein [Natrinema pellirubrum DSM
15624]
gi|448383664|ref|ZP_21562844.1| Sm ribonucleoprotein-like protein [Haloterrigena thermotolerans
DSM 11522]
gi|433305044|gb|AGB30856.1| small nuclear ribonucleoprotein [Natrinema pellirubrum DSM 15624]
gi|445627433|gb|ELY80757.1| Sm ribonucleoprotein-like protein [Natrinema pellirubrum DSM
15624]
gi|445659266|gb|ELZ12073.1| Sm ribonucleoprotein-like protein [Haloterrigena thermotolerans
DSM 11522]
Length = 74
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNG--QLKNKYGDAFI 72
P D L++ G V V+L SG +Y G L+ D +MN+ +E V G Q I
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLSGYDQHMNLVLEDVTIPVEGVDQEAPAEDTTII 64
Query: 73 RGNNVLYIS 81
RG+NV+ I+
Sbjct: 65 RGDNVVSIT 73
>gi|448303276|ref|ZP_21493225.1| Like-Sm ribonucleoprotein core [Natronorubrum sulfidifaciens JCM
14089]
gi|445593061|gb|ELY47239.1| Like-Sm ribonucleoprotein core [Natronorubrum sulfidifaciens JCM
14089]
Length = 75
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK---YGDAF 71
P D L++ G V V+L SG +Y G LA D +MN+ +E + +++++
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLAGYDQHMNLVLEDVTIPIGDEVESESPAEDTTI 64
Query: 72 IRGNNVLYIS 81
IRG+NV+ I+
Sbjct: 65 IRGDNVVSIT 74
>gi|284413738|ref|NP_001165121.1| small nuclear ribonucleoprotein polypeptide G [Xenopus laevis]
gi|114107958|gb|AAI23340.1| MGC154809 protein [Xenopus laevis]
Length = 76
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
+K LK + + +K+N G +GIL D +MN+ ++++ E +N G
Sbjct: 2 SKAHPPELKKFMDKKLSLKINGGRQVQGILRGFDPFMNLVLDESTEISGSGNQNSIGMVV 61
Query: 72 IRGNNVLYISTSKRT 86
IRGN+++ + +R
Sbjct: 62 IRGNSIIMLEALERV 76
>gi|358365662|dbj|GAA82284.1| U6 snRNA-associated Sm-like protein LSM4 [Aspergillus kawachii
IFO 4308]
Length = 121
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P L + +G P++V+L +G G LA D +MN+ + E + G + + ++R
Sbjct: 3 PLGLLTAAQGHPMLVELKNGETLNGHLASCDNWMNLILKEVVQTSPEGDRFFRLPEVYVR 62
Query: 74 GNNVLYISTSKRTL 87
GNN+ Y+ + +
Sbjct: 63 GNNIKYLRIPEEII 76
>gi|408404869|ref|YP_006862852.1| small nuclear ribonucleoprotein [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365465|gb|AFU59195.1| putative small nuclear ribonucleoprotein [Candidatus
Nitrososphaera gargensis Ga9.2]
Length = 76
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 24 GRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTS 83
G+ V++KL G RG L D +MN+ +E + E + N G +RG+NV+ IS
Sbjct: 15 GKVVLIKLKGGKVIRGNLHGFDQHMNLLLEDSVEILEEGKSNDLGTIVVRGDNVVIISPP 74
Query: 84 KR 85
+
Sbjct: 75 PK 76
>gi|114050793|ref|NP_001040405.1| small nuclear ribonucleoprotein G [Bombyx mori]
gi|95102770|gb|ABF51326.1| small nuclear ribonucleoprotein G [Bombyx mori]
Length = 76
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIRGNNV 77
LK + +KLN+G G+L D +MN+ + E EE +GQ +N G IRGN++
Sbjct: 9 LKKFMDKKWSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNSI 67
Query: 78 LYISTSKR 85
+ + + R
Sbjct: 68 IMLESLDR 75
>gi|449549919|gb|EMD40884.1| hypothetical protein CERSUDRAFT_131254 [Ceriporiopsis
subvermispora B]
Length = 97
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 15/96 (15%)
Query: 6 EKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV------ 59
+ ++ + P D ++ V VKL + G+L DG+MN+ + EE +
Sbjct: 2 DSAASGIQEPFDLIRLSLSERVFVKLRGDRELTGVLHAYDGHMNLILSDVEETIMIVDQV 61
Query: 60 ----NGQ-----LKNKYGDAFIRGNNVLYISTSKRT 86
NGQ K K F+RG+ V+ +S RT
Sbjct: 62 EGSANGQNTVNIAKRKIDMLFVRGDGVILVSPPLRT 97
>gi|259479587|tpe|CBF69945.1| TPA: U6 snRNA-associated Sm-like protein LSM4, putative
(AFU_orthologue; AFUA_2G12020) [Aspergillus nidulans
FGSC A4]
Length = 119
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P L + +G P++V+L +G G LA D +MN+ + E + G K + ++R
Sbjct: 3 PLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILREVVQTSPEGDRFFKLPEVYVR 62
Query: 74 GNNVLYISTSKRTL 87
GNN+ Y+ + +
Sbjct: 63 GNNIKYLRIPEEII 76
>gi|284174982|ref|ZP_06388951.1| small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus 98/2]
gi|384434272|ref|YP_005643630.1| Sm ribonucleoprotein-like protein [Sulfolobus solfataricus 98/2]
gi|261602426|gb|ACX92029.1| Like-Sm ribonucleoprotein core [Sulfolobus solfataricus 98/2]
Length = 76
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 27 VVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 81
V+VKL + RG+L D +MN+ + +EE + K G IRG+NV+ IS
Sbjct: 17 VLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVIRGDNVILIS 71
>gi|82913333|ref|XP_728601.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23485036|gb|EAA20166.1| Sm protein, putative [Plasmodium yoelii yoelii]
Length = 130
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQ-TEEYVNGQLKNKYGDAFIR 73
P LK + +PV+V+L +G Y G L D +MN+ M+ +G K + ++R
Sbjct: 2 PLTLLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYVR 61
Query: 74 GNNVLYISTSKRTLAD 89
G++V YI + + +
Sbjct: 62 GSSVKYIRVQDQAIEN 77
>gi|380496303|emb|CCF31809.1| U6 snRNA-associated Sm-like protein LSm2 [Colletotrichum
higginsianum]
Length = 98
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 18 FLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKY----GDAFIR 73
F K++ V V+L + + RGIL +D Y+NI +E+ V +LK + + FIR
Sbjct: 6 FFKTLIDHEVTVELKNDIQIRGILKSVDQYLNIKLEEIS--VVEELKYPHLSSVKNVFIR 63
Query: 74 GNNVLYI 80
G+ V Y+
Sbjct: 64 GSVVRYV 70
>gi|386002990|ref|YP_005921289.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
gi|357211046|gb|AET65666.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
Length = 65
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 39 GILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 81
G L +D Y+N+ +++T E V+G+ G +RGNN++ IS
Sbjct: 20 GTLNSVDDYLNLHLQETVEIVDGERARSLGSVILRGNNIILIS 62
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,422,987,501
Number of Sequences: 23463169
Number of extensions: 49541664
Number of successful extensions: 95597
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 543
Number of HSP's that attempted gapping in prelim test: 94275
Number of HSP's gapped (non-prelim): 1628
length of query: 91
length of database: 8,064,228,071
effective HSP length: 61
effective length of query: 30
effective length of database: 6,632,974,762
effective search space: 198989242860
effective search space used: 198989242860
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 69 (31.2 bits)