BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034564
(91 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SWN|B Chain B, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
pdb|3SWN|E Chain E, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
pdb|3SWN|Q Chain Q, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
pdb|3SWN|T Chain T, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
Length = 77
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 60/68 (88%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
+P +FL + G+ V+++L+SGVDY+GIL+CLDGYMN+A+E+TEEYVNG+ N YGDAFIR
Sbjct: 6 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIR 65
Query: 74 GNNVLYIS 81
GNNVLY+S
Sbjct: 66 GNNVLYVS 73
>pdb|4EMK|B Chain B, Crystal Structure Of Splsm567
Length = 75
Score = 102 bits (253), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 59/68 (86%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
+P +FL + G+ V+++L+SGVDY+GIL+CLDGY N+A+E+TEEYVNG+ N YGDAFIR
Sbjct: 4 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYXNLALERTEEYVNGKKTNVYGDAFIR 63
Query: 74 GNNVLYIS 81
GNNVLY+S
Sbjct: 64 GNNVLYVS 71
>pdb|3CW1|F Chain F, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|Z Chain Z, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|1 Chain 1, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|2 Chain 2, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3PGW|F Chain F, Crystal Structure Of Human U1 Snrnp
pdb|3PGW|I Chain I, Crystal Structure Of Human U1 Snrnp
pdb|2Y9A|F Chain F, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9A|M Chain M, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9A|T Chain T, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9B|F Chain F, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9B|M Chain M, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9B|T Chain T, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9C|F Chain F, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9C|M Chain M, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9C|T Chain T, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9D|F Chain F, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9D|M Chain M, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9D|T Chain T, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|3S6N|F Chain F, Crystal Structure Of The Gemin2-Binding Domain Of Smn,
Gemin2 In Complex With Smd1D2FEG FROM HUMAN
pdb|4F7U|F Chain F, Macromolecular Machine 6
pdb|4F7U|I Chain I, Macromolecular Machine 6
pdb|1VU2|D Chain D, The 8s Snrnp Assembly Intermediate
pdb|1VU2|L Chain L, The 8s Snrnp Assembly Intermediate
pdb|1VU2|T Chain T, The 8s Snrnp Assembly Intermediate
pdb|1VU2|BB Chain b, The 8s Snrnp Assembly Intermediate
pdb|1VU2|JJ Chain j, The 8s Snrnp Assembly Intermediate
pdb|1VU2|RR Chain r, The 8s Snrnp Assembly Intermediate
pdb|1VU2|ZZ Chain z, The 8s Snrnp Assembly Intermediate
pdb|1VU3|D Chain D, The 8s Snrnp Assembly Intermediate
pdb|1VU3|L Chain L, The 8s Snrnp Assembly Intermediate
pdb|1VU3|T Chain T, The 8s Snrnp Assembly Intermediate
pdb|1VU3|BB Chain b, The 8s Snrnp Assembly Intermediate
pdb|1VU3|JJ Chain j, The 8s Snrnp Assembly Intermediate
pdb|1VU3|RR Chain r, The 8s Snrnp Assembly Intermediate
pdb|4F77|L Chain L, The 8s Snrnp Assembly Intermediate
pdb|4F77|D Chain D, The 8s Snrnp Assembly Intermediate
pdb|4F77|T Chain T, The 8s Snrnp Assembly Intermediate
pdb|4F77|BB Chain b, The 8s Snrnp Assembly Intermediate
pdb|4F77|JJ Chain j, The 8s Snrnp Assembly Intermediate
pdb|4F77|RR Chain r, The 8s Snrnp Assembly Intermediate
pdb|4F77|ZZ Chain z, The 8s Snrnp Assembly Intermediate
Length = 86
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 66
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 67 NNVLYI 72
>pdb|1JBM|A Chain A, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
pdb|1JBM|B Chain B, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
pdb|1JBM|C Chain C, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
pdb|1JBM|D Chain D, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
pdb|1JBM|E Chain E, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
pdb|1JBM|F Chain F, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
pdb|1JBM|G Chain G, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
Length = 86
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
+ P D L + PV++KL ++RG+L D +MN+ + EE +G++ + G
Sbjct: 9 VNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGT 68
Query: 70 AFIRGNNVLYISTSK 84
IRG+N++YIS K
Sbjct: 69 VLIRGDNIVYISRGK 83
>pdb|1LOJ|A Chain A, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
pdb|1LOJ|B Chain B, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
pdb|1LOJ|C Chain C, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
pdb|1LOJ|D Chain D, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
pdb|1LOJ|E Chain E, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
pdb|1LOJ|F Chain F, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
pdb|1LOJ|G Chain G, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
pdb|1LOJ|H Chain H, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
pdb|1LOJ|I Chain I, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
pdb|1LOJ|J Chain J, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
pdb|1LOJ|K Chain K, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
pdb|1LOJ|L Chain L, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
pdb|1LOJ|M Chain M, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
pdb|1LOJ|N Chain N, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
Length = 87
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
+ P D L + PV++KL ++RG+L D +MN+ + EE +G++ + G
Sbjct: 9 VNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGT 68
Query: 70 AFIRGNNVLYISTSK 84
IRG+N++YIS K
Sbjct: 69 VLIRGDNIVYISRGK 83
>pdb|1JRI|A Chain A, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
pdb|1JRI|B Chain B, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
pdb|1JRI|C Chain C, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
pdb|1JRI|D Chain D, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
pdb|1JRI|E Chain E, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
pdb|1JRI|F Chain F, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
pdb|1JRI|G Chain G, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
pdb|1JRI|H Chain H, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
pdb|1JRI|I Chain I, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
pdb|1JRI|J Chain J, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
pdb|1JRI|K Chain K, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
pdb|1JRI|L Chain L, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
pdb|1JRI|M Chain M, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
pdb|1JRI|N Chain N, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit
Length = 85
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
+ P D L + PV++KL ++RG+L D +MN+ + EE +G++ + G
Sbjct: 9 VNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGT 68
Query: 70 AFIRGNNVLYISTSK 84
IRG+N++YIS K
Sbjct: 69 VLIRGDNIVYISRGK 83
>pdb|1I81|A Chain A, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
pdb|1I81|B Chain B, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
pdb|1I81|C Chain C, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
pdb|1I81|D Chain D, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
pdb|1I81|E Chain E, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
pdb|1I81|F Chain F, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
pdb|1I81|G Chain G, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
pdb|1MGQ|A Chain A, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
pdb|1MGQ|B Chain B, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
pdb|1MGQ|C Chain C, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
pdb|1MGQ|D Chain D, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
pdb|1MGQ|E Chain E, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
pdb|1MGQ|F Chain F, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
pdb|1MGQ|G Chain G, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
Length = 83
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
+ P D L + PV++KL ++RG+L D +MN+ + EE +G++ + G
Sbjct: 11 VNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGT 70
Query: 70 AFIRGNNVLYIS 81
IRG+N++YIS
Sbjct: 71 VLIRGDNIVYIS 82
>pdb|1N9S|A Chain A, Crystal Structure Of Yeast Smf In Spacegroup P43212
pdb|1N9S|B Chain B, Crystal Structure Of Yeast Smf In Spacegroup P43212
pdb|1N9S|C Chain C, Crystal Structure Of Yeast Smf In Spacegroup P43212
pdb|1N9S|D Chain D, Crystal Structure Of Yeast Smf In Spacegroup P43212
pdb|1N9S|E Chain E, Crystal Structure Of Yeast Smf In Spacegroup P43212
pdb|1N9S|F Chain F, Crystal Structure Of Yeast Smf In Spacegroup P43212
pdb|1N9S|G Chain G, Crystal Structure Of Yeast Smf In Spacegroup P43212
pdb|1N9S|H Chain H, Crystal Structure Of Yeast Smf In Spacegroup P43212
pdb|1N9S|I Chain I, Crystal Structure Of Yeast Smf In Spacegroup P43212
pdb|1N9S|J Chain J, Crystal Structure Of Yeast Smf In Spacegroup P43212
pdb|1N9S|K Chain K, Crystal Structure Of Yeast Smf In Spacegroup P43212
pdb|1N9S|L Chain L, Crystal Structure Of Yeast Smf In Spacegroup P43212
pdb|1N9S|M Chain M, Crystal Structure Of Yeast Smf In Spacegroup P43212
pdb|1N9S|N Chain N, Crystal Structure Of Yeast Smf In Spacegroup P43212
Length = 93
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYV 59
MS + + P FLK + V VKL + +YRG L D Y N+ + + EE+V
Sbjct: 8 MSESSDISAMQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFV 67
Query: 60 NGQLKNKYGDAFIRGNNVLYI 80
G G+ FIR NNVLYI
Sbjct: 68 AGVSHGTLGEIFIRSNNVLYI 88
>pdb|1N9R|A Chain A, Crystal Structure Of A Heptameric Ring Complex Of Yeast
Smf In Spacegroup P4122
pdb|1N9R|B Chain B, Crystal Structure Of A Heptameric Ring Complex Of Yeast
Smf In Spacegroup P4122
pdb|1N9R|C Chain C, Crystal Structure Of A Heptameric Ring Complex Of Yeast
Smf In Spacegroup P4122
pdb|1N9R|D Chain D, Crystal Structure Of A Heptameric Ring Complex Of Yeast
Smf In Spacegroup P4122
pdb|1N9R|E Chain E, Crystal Structure Of A Heptameric Ring Complex Of Yeast
Smf In Spacegroup P4122
pdb|1N9R|F Chain F, Crystal Structure Of A Heptameric Ring Complex Of Yeast
Smf In Spacegroup P4122
pdb|1N9R|G Chain G, Crystal Structure Of A Heptameric Ring Complex Of Yeast
Smf In Spacegroup P4122
Length = 93
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYV 59
MS + + P FLK + V VKL + +YRG L D Y N+ + + EE+V
Sbjct: 8 MSESSDISAMQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFV 67
Query: 60 NGQLKNKYGDAFIRGNNVLYI 80
G G+ FIR NNVLYI
Sbjct: 68 AGVSHGTLGEIFIRCNNVLYI 88
>pdb|1I5L|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|B Chain B, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|C Chain C, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|D Chain D, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|E Chain E, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|F Chain F, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|G Chain G, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|H Chain H, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|I Chain I, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|J Chain J, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|K Chain K, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|L Chain L, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|M Chain M, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I5L|N Chain N, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
pdb|1I4K|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|B Chain B, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|C Chain C, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|D Chain D, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|E Chain E, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|F Chain F, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|G Chain G, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|H Chain H, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|I Chain I, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|J Chain J, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|K Chain K, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|L Chain L, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|M Chain M, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|N Chain N, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|O Chain O, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|P Chain P, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|Q Chain Q, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|R Chain R, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|S Chain S, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|T Chain T, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|U Chain U, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|V Chain V, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|W Chain W, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|X Chain X, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|Y Chain Y, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|Z Chain Z, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|1 Chain 1, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
pdb|1I4K|2 Chain 2, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
Length = 77
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P D L PV+V+L G ++RG L D +MN+ + EE NG++ K G IRG
Sbjct: 5 PLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRG 64
Query: 75 NNVLYISTSK 84
+ V+++S +
Sbjct: 65 DTVVFVSPAP 74
>pdb|1M8V|A Chain A, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
pdb|1M8V|B Chain B, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
pdb|1M8V|C Chain C, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
pdb|1M8V|D Chain D, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
pdb|1M8V|E Chain E, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
pdb|1M8V|F Chain F, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
pdb|1M8V|G Chain G, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
pdb|1M8V|H Chain H, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
pdb|1M8V|I Chain I, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
pdb|1M8V|J Chain J, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
pdb|1M8V|K Chain K, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
pdb|1M8V|L Chain L, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
pdb|1M8V|M Chain M, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
pdb|1M8V|N Chain N, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
Length = 77
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
A + P D + + V+V L G ++RG L D ++N+ + E +G++ +YG
Sbjct: 2 AMAERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGK 61
Query: 70 AFIRGNNVLYISTSK 84
IRG+NVL IS ++
Sbjct: 62 IVIRGDNVLAISPTE 76
>pdb|1I8F|A Chain A, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
pdb|1I8F|B Chain B, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
pdb|1I8F|C Chain C, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
pdb|1I8F|D Chain D, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
pdb|1I8F|E Chain E, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
pdb|1I8F|F Chain F, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
pdb|1I8F|G Chain G, The Crystal Structure Of A Heptameric Archaeal Sm
Protein: Implications For The Eukaryotic Snrnp Core
pdb|1LNX|A Chain A, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
pdb|1LNX|B Chain B, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
pdb|1LNX|C Chain C, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
pdb|1LNX|D Chain D, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
pdb|1LNX|E Chain E, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
pdb|1LNX|F Chain F, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
pdb|1LNX|G Chain G, Crystal Structure Of The P.Aerophilum Smap1 Heptamer In
A New Crystal Form (C2221)
Length = 81
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 24 GRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 81
G+ V+VKL + RGIL D ++N+ +E EE ++G + K G +RG NVL+IS
Sbjct: 21 GKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEIIDGNVY-KRGTMVVRGENVLFIS 77
>pdb|1H64|1 Chain 1, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
pdb|1H64|2 Chain 2, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
pdb|1H64|A Chain A, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
pdb|1H64|B Chain B, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
pdb|1H64|C Chain C, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
pdb|1H64|D Chain D, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
pdb|1H64|E Chain E, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
pdb|1H64|F Chain F, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
pdb|1H64|G Chain G, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
pdb|1H64|H Chain H, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
pdb|1H64|I Chain I, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
pdb|1H64|J Chain J, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
pdb|1H64|K Chain K, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
pdb|1H64|L Chain L, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
pdb|1H64|M Chain M, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
pdb|1H64|N Chain N, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
pdb|1H64|O Chain O, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
pdb|1H64|P Chain P, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
pdb|1H64|Q Chain Q, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
pdb|1H64|R Chain R, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
pdb|1H64|S Chain S, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
pdb|1H64|T Chain T, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
pdb|1H64|U Chain U, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
pdb|1H64|V Chain V, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
pdb|1H64|W Chain W, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
pdb|1H64|X Chain X, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
pdb|1H64|Y Chain Y, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
pdb|1H64|Z Chain Z, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
Length = 75
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
+ P D + + V+V L G ++RG L D ++N+ + E +G++ +YG
Sbjct: 2 AERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIV 61
Query: 72 IRGNNVLYISTSK 84
IRG+NVL IS ++
Sbjct: 62 IRGDNVLAISPTE 74
>pdb|4EMH|A Chain A, Crystal Structure Of Splsm4
pdb|4EMH|B Chain B, Crystal Structure Of Splsm4
pdb|4EMH|C Chain C, Crystal Structure Of Splsm4
pdb|4EMH|D Chain D, Crystal Structure Of Splsm4
pdb|4EMH|E Chain E, Crystal Structure Of Splsm4
pdb|4EMH|F Chain F, Crystal Structure Of Splsm4
pdb|4EMH|G Chain G, Crystal Structure Of Splsm4
pdb|4EMH|H Chain H, Crystal Structure Of Splsm4
pdb|4EMH|I Chain I, Crystal Structure Of Splsm4
pdb|4EMH|J Chain J, Crystal Structure Of Splsm4
pdb|4EMH|K Chain K, Crystal Structure Of Splsm4
pdb|4EMH|L Chain L, Crystal Structure Of Splsm4
pdb|4EMH|M Chain M, Crystal Structure Of Splsm4
pdb|4EMH|N Chain N, Crystal Structure Of Splsm4
pdb|4EMH|O Chain O, Crystal Structure Of Splsm4
pdb|4EMH|P Chain P, Crystal Structure Of Splsm4
pdb|4EMH|Q Chain Q, Crystal Structure Of Splsm4
pdb|4EMH|R Chain R, Crystal Structure Of Splsm4
pdb|4EMH|T Chain T, Crystal Structure Of Splsm4
pdb|4EMH|U Chain U, Crystal Structure Of Splsm4
pdb|4EMH|V Chain V, Crystal Structure Of Splsm4
pdb|4EMH|W Chain W, Crystal Structure Of Splsm4
pdb|4EMH|X Chain X, Crystal Structure Of Splsm4
pdb|4EMH|Y Chain Y, Crystal Structure Of Splsm4
Length = 105
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM-EQTEEYVNGQLKNKYGDAFIR 73
P L + +GRP++V+L +G + G L D Y N+ + E +G + + +IR
Sbjct: 17 PLTLLNATQGRPILVELKNGETFNGHLENCDNYXNLTLREVIRTXPDGDKFFRLPECYIR 76
Query: 74 GNNVLYISTSKRTLADGA 91
GNN+ Y+ L+ A
Sbjct: 77 GNNIKYLRIQDEVLSQVA 94
>pdb|3CW1|G Chain G, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|3 Chain 3, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|4 Chain 4, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|5 Chain 5, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3PGW|G Chain G, Crystal Structure Of Human U1 Snrnp
pdb|3PGW|J Chain J, Crystal Structure Of Human U1 Snrnp
pdb|2Y9A|G Chain G, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9A|N Chain N, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9A|U Chain U, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9B|G Chain G, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9B|N Chain N, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9B|U Chain U, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9C|G Chain G, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9C|N Chain N, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9C|U Chain U, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9D|G Chain G, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9D|N Chain N, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9D|U Chain U, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|3S6N|G Chain G, Crystal Structure Of The Gemin2-Binding Domain Of Smn,
Gemin2 In Complex With Smd1D2FEG FROM HUMAN
pdb|4F7U|G Chain G, Macromolecular Machine 6
pdb|4F7U|J Chain J, Macromolecular Machine 6
pdb|1VU2|H Chain H, The 8s Snrnp Assembly Intermediate
pdb|1VU2|P Chain P, The 8s Snrnp Assembly Intermediate
pdb|1VU2|X Chain X, The 8s Snrnp Assembly Intermediate
pdb|1VU2|FF Chain f, The 8s Snrnp Assembly Intermediate
pdb|1VU2|NN Chain n, The 8s Snrnp Assembly Intermediate
pdb|1VU2|VV Chain v, The 8s Snrnp Assembly Intermediate
pdb|1VU2|4 Chain 4, The 8s Snrnp Assembly Intermediate
pdb|1VU3|H Chain H, The 8s Snrnp Assembly Intermediate
pdb|1VU3|P Chain P, The 8s Snrnp Assembly Intermediate
pdb|1VU3|X Chain X, The 8s Snrnp Assembly Intermediate
pdb|1VU3|FF Chain f, The 8s Snrnp Assembly Intermediate
pdb|1VU3|NN Chain n, The 8s Snrnp Assembly Intermediate
pdb|1VU3|VV Chain v, The 8s Snrnp Assembly Intermediate
pdb|4F77|P Chain P, The 8s Snrnp Assembly Intermediate
pdb|4F77|H Chain H, The 8s Snrnp Assembly Intermediate
pdb|4F77|X Chain X, The 8s Snrnp Assembly Intermediate
pdb|4F77|FF Chain f, The 8s Snrnp Assembly Intermediate
pdb|4F77|NN Chain n, The 8s Snrnp Assembly Intermediate
pdb|4F77|VV Chain v, The 8s Snrnp Assembly Intermediate
pdb|4F77|4 Chain 4, The 8s Snrnp Assembly Intermediate
Length = 76
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
+K LK + + +KLN G +GIL D +MN+ +++ E +N G
Sbjct: 2 SKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVV 61
Query: 72 IRGNNVLYISTSKRT 86
IRGN+++ + +R
Sbjct: 62 IRGNSIIMLEALERV 76
>pdb|1TH7|A Chain A, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|B Chain B, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|C Chain C, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|D Chain D, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|E Chain E, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|F Chain F, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|G Chain G, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|H Chain H, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|I Chain I, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|J Chain J, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|K Chain K, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|L Chain L, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|M Chain M, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|N Chain N, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
Length = 81
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 27 VVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIS 81
V+VKL + RG+L D +MN+ + +EE + K G IRG+NV+ IS
Sbjct: 22 VLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVIRGDNVILIS 76
>pdb|1M5Q|A Chain A, Crystal Structure Of A Novel Sm-Like Archaeal Protein
From Pyrobaculum Aerophilum
pdb|1M5Q|B Chain B, Crystal Structure Of A Novel Sm-Like Archaeal Protein
From Pyrobaculum Aerophilum
pdb|1M5Q|C Chain C, Crystal Structure Of A Novel Sm-Like Archaeal Protein
From Pyrobaculum Aerophilum
pdb|1M5Q|D Chain D, Crystal Structure Of A Novel Sm-Like Archaeal Protein
From Pyrobaculum Aerophilum
pdb|1M5Q|E Chain E, Crystal Structure Of A Novel Sm-Like Archaeal Protein
From Pyrobaculum Aerophilum
pdb|1M5Q|F Chain F, Crystal Structure Of A Novel Sm-Like Archaeal Protein
From Pyrobaculum Aerophilum
pdb|1M5Q|G Chain G, Crystal Structure Of A Novel Sm-Like Archaeal Protein
From Pyrobaculum Aerophilum
pdb|1M5Q|H Chain H, Crystal Structure Of A Novel Sm-Like Archaeal Protein
From Pyrobaculum Aerophilum
pdb|1M5Q|I Chain I, Crystal Structure Of A Novel Sm-Like Archaeal Protein
From Pyrobaculum Aerophilum
pdb|1M5Q|J Chain J, Crystal Structure Of A Novel Sm-Like Archaeal Protein
From Pyrobaculum Aerophilum
pdb|1M5Q|K Chain K, Crystal Structure Of A Novel Sm-Like Archaeal Protein
From Pyrobaculum Aerophilum
pdb|1M5Q|L Chain L, Crystal Structure Of A Novel Sm-Like Archaeal Protein
From Pyrobaculum Aerophilum
pdb|1M5Q|M Chain M, Crystal Structure Of A Novel Sm-Like Archaeal Protein
From Pyrobaculum Aerophilum
pdb|1M5Q|N Chain N, Crystal Structure Of A Novel Sm-Like Archaeal Protein
From Pyrobaculum Aerophilum
pdb|1M5Q|O Chain O, Crystal Structure Of A Novel Sm-Like Archaeal Protein
From Pyrobaculum Aerophilum
pdb|1M5Q|P Chain P, Crystal Structure Of A Novel Sm-Like Archaeal Protein
From Pyrobaculum Aerophilum
pdb|1M5Q|Q Chain Q, Crystal Structure Of A Novel Sm-Like Archaeal Protein
From Pyrobaculum Aerophilum
pdb|1M5Q|R Chain R, Crystal Structure Of A Novel Sm-Like Archaeal Protein
From Pyrobaculum Aerophilum
pdb|1M5Q|S Chain S, Crystal Structure Of A Novel Sm-Like Archaeal Protein
From Pyrobaculum Aerophilum
pdb|1M5Q|T Chain T, Crystal Structure Of A Novel Sm-Like Archaeal Protein
From Pyrobaculum Aerophilum
pdb|1M5Q|U Chain U, Crystal Structure Of A Novel Sm-Like Archaeal Protein
From Pyrobaculum Aerophilum
pdb|1M5Q|V Chain V, Crystal Structure Of A Novel Sm-Like Archaeal Protein
From Pyrobaculum Aerophilum
pdb|1M5Q|W Chain W, Crystal Structure Of A Novel Sm-Like Archaeal Protein
From Pyrobaculum Aerophilum
pdb|1M5Q|X Chain X, Crystal Structure Of A Novel Sm-Like Archaeal Protein
From Pyrobaculum Aerophilum
pdb|1M5Q|Y Chain Y, Crystal Structure Of A Novel Sm-Like Archaeal Protein
From Pyrobaculum Aerophilum
pdb|1M5Q|Z Chain Z, Crystal Structure Of A Novel Sm-Like Archaeal Protein
From Pyrobaculum Aerophilum
pdb|1M5Q|1 Chain 1, Crystal Structure Of A Novel Sm-Like Archaeal Protein
From Pyrobaculum Aerophilum
pdb|1M5Q|2 Chain 2, Crystal Structure Of A Novel Sm-Like Archaeal Protein
From Pyrobaculum Aerophilum
Length = 130
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 19 LKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVL 78
L ++ GR V V L++G Y+G+L +D +NI + + + K+ FI ++
Sbjct: 5 LNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANA----SNKAGEKFNRVFIXYRYIV 60
Query: 79 YISTSKRTL 87
+I +++R +
Sbjct: 61 HIDSTERRI 69
>pdb|3BW1|A Chain A, Crystal Structure Of Homomeric Yeast Lsm3 Exhibiting
Novel Octameric Ring Organisation
pdb|3BW1|B Chain B, Crystal Structure Of Homomeric Yeast Lsm3 Exhibiting
Novel Octameric Ring Organisation
Length = 96
Score = 32.0 bits (71), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV----NGQL---KN 65
+TP D LK V +KL G L D + NI + E + N +L +
Sbjct: 9 ETPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESER 68
Query: 66 KYGDAFIRGNNVLYISTSKRTLADGA 91
+ FIRG+ V IST DGA
Sbjct: 69 RCEMVFIRGDTVTLISTPSED-DDGA 93
>pdb|3SWN|A Chain A, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
pdb|3SWN|D Chain D, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
pdb|3SWN|P Chain P, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
pdb|3SWN|S Chain S, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
Length = 82
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 8 GSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEY--VNGQLKN 65
G + T P + + G + V + S ++ G L D Y+NI ++ EY V G +
Sbjct: 2 GMSMTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTG-VTE 60
Query: 66 KYGDAFIRGN 75
K+ + + GN
Sbjct: 61 KHSEMLLNGN 70
>pdb|1LJO|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm2) From
Archaeoglobus Fulgidus At 1.95a Resolution
Length = 77
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSGVD-YRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P +KS+ G+ + V++ + G L +D YMN+ + E + G+ +R
Sbjct: 6 PNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIVLR 65
Query: 74 GNNVLYISTSKR 85
GNNV+ I +
Sbjct: 66 GNNVVLIQPQEE 77
>pdb|3UK8|A Chain A, The Crystal Structure Of The Cd-Bound Domain 3 Of The
Cadmium Carbonic Anhydrase From Marine Diatom
Thalassiosira Weissflogii
pdb|3UK8|B Chain B, The Crystal Structure Of The Cd-Bound Domain 3 Of The
Cadmium Carbonic Anhydrase From Marine Diatom
Thalassiosira Weissflogii
Length = 231
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 9/49 (18%)
Query: 7 KGSATTKTPADFLKSIRGR---PVVVKLNS------GVDYRGILACLDG 46
+GS + TP + ++RGR +VK ++ VD +GIL C+DG
Sbjct: 17 RGSHMSITPPQIVSALRGRGWKASIVKASTMSSELKRVDPQGILKCVDG 65
>pdb|4EMG|A Chain A, Crystal Structure Of Splsm3
pdb|4EMG|B Chain B, Crystal Structure Of Splsm3
pdb|4EMG|C Chain C, Crystal Structure Of Splsm3
pdb|4EMG|D Chain D, Crystal Structure Of Splsm3
pdb|4EMG|E Chain E, Crystal Structure Of Splsm3
pdb|4EMG|F Chain F, Crystal Structure Of Splsm3
pdb|4EMG|G Chain G, Crystal Structure Of Splsm3
pdb|4EMG|H Chain H, Crystal Structure Of Splsm3
pdb|4EMG|I Chain I, Crystal Structure Of Splsm3
pdb|4EMG|J Chain J, Crystal Structure Of Splsm3
pdb|4EMG|K Chain K, Crystal Structure Of Splsm3
pdb|4EMG|L Chain L, Crystal Structure Of Splsm3
pdb|4EMG|M Chain M, Crystal Structure Of Splsm3
pdb|4EMG|N Chain N, Crystal Structure Of Splsm3
Length = 93
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 13/91 (14%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN------ 60
+ + P D ++ V VKL + G L D ++N + EE V
Sbjct: 2 ESAQAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNXVLGDAEEIVTIFDDEE 61
Query: 61 -------GQLKNKYGDAFIRGNNVLYISTSK 84
++ Y F+RG++V+ I+ +
Sbjct: 62 TDKDKALKTIRKHYEXLFVRGDSVILIAPPR 92
>pdb|3QEA|Z Chain Z, Crystal Structure Of Human Exonuclease 1 Exo1 (Wt) In
Complex With Dna (Complex Ii)
pdb|3QEB|Z Chain Z, Crystal Structure Of Human Exonuclease 1 Exo1 (Wt) In
Complex With Dna And Mn2+ (Complex Iii)
Length = 352
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 14/67 (20%)
Query: 17 DFLKSIRGRPV-----VVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
D+L S+RG + V++L + D ++ + Y+ + + E+Y+NG F
Sbjct: 225 DYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYING---------F 275
Query: 72 IRGNNVL 78
IR NN
Sbjct: 276 IRANNTF 282
>pdb|3QE9|Y Chain Y, Crystal Structure Of Human Exonuclease 1 Exo1 (D173a) In
Complex With Dna (Complex I)
pdb|3QE9|Z Chain Z, Crystal Structure Of Human Exonuclease 1 Exo1 (D173a) In
Complex With Dna (Complex I)
Length = 352
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 14/67 (20%)
Query: 17 DFLKSIRGRPV-----VVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
D+L S+RG + V++L + D ++ + Y+ + + E+Y+NG F
Sbjct: 225 DYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYING---------F 275
Query: 72 IRGNNVL 78
IR NN
Sbjct: 276 IRANNTF 282
>pdb|4EMK|A Chain A, Crystal Structure Of Splsm567
Length = 94
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEY--VNGQLKNKY 67
+ T P + + G + V S ++ G L D Y+NI ++ EY V G + K+
Sbjct: 16 SXTILPLELIDKCIGSNLWVIXKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTG-VTEKH 74
Query: 68 GDAFIRGN 75
+ + GN
Sbjct: 75 SEXLLNGN 82
>pdb|1B34|A Chain A, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain
pdb|3CW1|B Chain B, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|M Chain M, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|N Chain N, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|O Chain O, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3PGW|X Chain X, Crystal Structure Of Human U1 Snrnp
pdb|3PGW|U Chain U, Crystal Structure Of Human U1 Snrnp
pdb|2Y9A|B Chain B, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9A|I Chain I, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9A|P Chain P, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9B|B Chain B, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9B|I Chain I, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9B|P Chain P, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9C|B Chain B, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9C|I Chain I, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9C|P Chain P, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9D|B Chain B, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9D|I Chain I, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9D|P Chain P, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|3S6N|A Chain A, Crystal Structure Of The Gemin2-Binding Domain Of Smn,
Gemin2 In Complex With Smd1D2FEG FROM HUMAN
pdb|4F7U|A Chain A, Macromolecular Machine 6
pdb|4F7U|C Chain C, Macromolecular Machine 6
pdb|1VU2|A Chain A, The 8s Snrnp Assembly Intermediate
pdb|1VU2|I Chain I, The 8s Snrnp Assembly Intermediate
pdb|1VU2|Q Chain Q, The 8s Snrnp Assembly Intermediate
pdb|1VU2|Y Chain Y, The 8s Snrnp Assembly Intermediate
pdb|1VU2|GG Chain g, The 8s Snrnp Assembly Intermediate
pdb|1VU2|OO Chain o, The 8s Snrnp Assembly Intermediate
pdb|1VU2|WW Chain w, The 8s Snrnp Assembly Intermediate
pdb|1VU3|A Chain A, The 8s Snrnp Assembly Intermediate
pdb|1VU3|I Chain I, The 8s Snrnp Assembly Intermediate
pdb|1VU3|Q Chain Q, The 8s Snrnp Assembly Intermediate
pdb|1VU3|Y Chain Y, The 8s Snrnp Assembly Intermediate
pdb|1VU3|GG Chain g, The 8s Snrnp Assembly Intermediate
pdb|1VU3|OO Chain o, The 8s Snrnp Assembly Intermediate
pdb|4F77|I Chain I, The 8s Snrnp Assembly Intermediate
pdb|4F77|A Chain A, The 8s Snrnp Assembly Intermediate
pdb|4F77|Q Chain Q, The 8s Snrnp Assembly Intermediate
pdb|4F77|Y Chain Y, The 8s Snrnp Assembly Intermediate
pdb|4F77|GG Chain g, The 8s Snrnp Assembly Intermediate
pdb|4F77|OO Chain o, The 8s Snrnp Assembly Intermediate
pdb|4F77|WW Chain w, The 8s Snrnp Assembly Intermediate
Length = 119
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 18 FLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNV 77
FL + V ++L +G G + +D MN ++ + + + + IRGNN+
Sbjct: 6 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 65
Query: 78 LY 79
Y
Sbjct: 66 RY 67
>pdb|3PGW|Z Chain Z, Crystal Structure Of Human U1 Snrnp
pdb|3PGW|W Chain W, Crystal Structure Of Human U1 Snrnp
pdb|2Y9A|D Chain D, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9A|K Chain K, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9A|R Chain R, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9B|D Chain D, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9B|K Chain K, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9B|R Chain R, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9C|D Chain D, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9C|K Chain K, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9C|R Chain R, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9D|D Chain D, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9D|K Chain K, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9D|R Chain R, Structure Of The Spliceosomal U4 Snrnp Core Domain
Length = 126
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQ-TEEYVNGQLKNKYGDAFI 72
P L G V + N+G YRG L + MN M T Y +G++ + +I
Sbjct: 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVA-QLEQVYI 63
Query: 73 RGNNVLYI 80
RG+ + ++
Sbjct: 64 RGSKIRFL 71
>pdb|3CW1|D Chain D, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|S Chain S, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|T Chain T, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|U Chain U, Crystal Structure Of Human Spliceosomal U1 Snrnp
Length = 126
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQ-TEEYVNGQLKNKYGDAFI 72
P L G V + N+G YRG L + MN M T Y +G++ + +I
Sbjct: 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVA-QLEQVYI 63
Query: 73 RGNNVLYI 80
RG + ++
Sbjct: 64 RGCKIRFL 71
>pdb|1D3B|A Chain A, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
pdb|1D3B|C Chain C, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
pdb|1D3B|E Chain E, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
pdb|1D3B|G Chain G, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
pdb|1D3B|I Chain I, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
pdb|1D3B|K Chain K, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
Length = 75
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQ-TEEYVNGQLKNKYGDAFI 72
P L G V + N+G YRG L + MN M T Y +G++ + +I
Sbjct: 5 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVA-QLEQVYI 63
Query: 73 RGNNVLYI 80
RG + ++
Sbjct: 64 RGCKIRFL 71
>pdb|2FWK|A Chain A, Crystal Structure Of Cryptosporidium Parvum U6 Snrna-
Associated Sm-Like Protein Lsm5
pdb|2FWK|B Chain B, Crystal Structure Of Cryptosporidium Parvum U6 Snrna-
Associated Sm-Like Protein Lsm5
pdb|3PGG|A Chain A, Crystal Structure Of Cryptosporidium Parvum U6
Snrna-Associated Sm- Like Protein Lsm5
pdb|3PGG|B Chain B, Crystal Structure Of Cryptosporidium Parvum U6
Snrna-Associated Sm- Like Protein Lsm5
Length = 121
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEY 58
P + G + V + ++ G+L D Y+N+ ++ +EY
Sbjct: 29 PLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEY 72
>pdb|2ORY|A Chain A, Crystal Structure Of M37 Lipase
pdb|2ORY|B Chain B, Crystal Structure Of M37 Lipase
Length = 346
Score = 25.4 bits (54), Expect = 9.0, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 3 TGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGI 40
TG KG A + T A +LK I+G VKL+ +D I
Sbjct: 171 TGHSKGGALSSTLALWLKDIQG----VKLSQNIDISTI 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,788,223
Number of Sequences: 62578
Number of extensions: 101074
Number of successful extensions: 238
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 214
Number of HSP's gapped (non-prelim): 31
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)