BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034564
(91 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P62313|LSM6_MOUSE U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus GN=Lsm6
PE=3 SV=1
Length = 80
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/79 (84%), Positives = 72/79 (91%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 61
Query: 69 DAFIRGNNVLYISTSKRTL 87
DAFIRGNNVLYIST KR +
Sbjct: 62 DAFIRGNNVLYISTQKRRM 80
>sp|P62312|LSM6_HUMAN U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens GN=LSM6
PE=1 SV=1
Length = 80
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/79 (84%), Positives = 72/79 (91%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2 SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 61
Query: 69 DAFIRGNNVLYISTSKRTL 87
DAFIRGNNVLYIST KR +
Sbjct: 62 DAFIRGNNVLYISTQKRRM 80
>sp|B0DWN3|LSM6_LACBS U6 snRNA-associated Sm-like protein LSm6 OS=Laccaria bicolor
(strain S238N-H82 / ATCC MYA-4686) GN=LSM6 PE=3 SV=1
Length = 99
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 64/73 (87%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
T +P DFLK + G+ V+V+L SGVDYRG+L+CLDGYMNIA+EQTEE+VNG + N+YGDAF
Sbjct: 25 TGSPTDFLKGVVGKRVIVRLTSGVDYRGLLSCLDGYMNIALEQTEEHVNGVVTNRYGDAF 84
Query: 72 IRGNNVLYISTSK 84
IRGNNVLYIS ++
Sbjct: 85 IRGNNVLYISAAE 97
>sp|Q4PG71|LSM6_USTMA U6 snRNA-associated Sm-like protein LSm6 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=LSM6 PE=3 SV=2
Length = 85
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 67/85 (78%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
MS ++ +A +P DFLK + G+ V V+LNSG+DYRG+L+CLDGYMNIA+EQT EYV+
Sbjct: 1 MSAAAQQPNAKAGSPNDFLKGVIGKNVNVRLNSGIDYRGVLSCLDGYMNIALEQTVEYVD 60
Query: 61 GQLKNKYGDAFIRGNNVLYISTSKR 85
G KN YGDAFIRGNNV+YI+ ++
Sbjct: 61 GIKKNSYGDAFIRGNNVMYITALEK 85
>sp|Q552U1|LSM6_DICDI Probable U6 snRNA-associated Sm-like protein LSm6
OS=Dictyostelium discoideum GN=lsm6 PE=3 SV=1
Length = 88
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 56/69 (81%)
Query: 17 DFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNN 76
+F K GRPVVVKLN+GV+YRGIL +DG MNI MEQTEEY+NGQLK KYGD F+RGNN
Sbjct: 19 NFFKMCIGRPVVVKLNNGVEYRGILEVVDGNMNIVMEQTEEYLNGQLKTKYGDCFLRGNN 78
Query: 77 VLYISTSKR 85
VLYIS R
Sbjct: 79 VLYISAQPR 87
>sp|A6R363|LSM6_AJECN U6 snRNA-associated Sm-like protein LSm6 OS=Ajellomyces capsulata
(strain NAm1 / WU24) GN=LSM6 PE=3 SV=1
Length = 80
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 6 EKGSATT-KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLK 64
E GSA+ K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+TEEYV+G+L+
Sbjct: 2 ENGSASEGKDPSAFLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLR 61
Query: 65 NKYGDAFIRGNNVLYIS 81
YGDAF+RGNNVLYIS
Sbjct: 62 RSYGDAFVRGNNVLYIS 78
>sp|Q9UUI1|LSM6_SCHPO U6 snRNA-associated Sm-like protein LSm6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm6 PE=1 SV=1
Length = 75
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 60/68 (88%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
+P +FL + G+ V+++L+SGVDY+GIL+CLDGYMN+A+E+TEEYVNG+ N YGDAFIR
Sbjct: 4 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIR 63
Query: 74 GNNVLYIS 81
GNNVLY+S
Sbjct: 64 GNNVLYVS 71
>sp|A8NHT8|LSM6_COPC7 U6 snRNA-associated Sm-like protein LSm6 OS=Coprinopsis cinerea
(strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)
GN=LSM6 PE=3 SV=2
Length = 95
Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 63/73 (86%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
T +P DFLK + G+ VVV+L SGVDYRGIL+CLDGYMNIAMEQTEE VNG++ N+YGDAF
Sbjct: 21 TGSPTDFLKGVVGKRVVVRLLSGVDYRGILSCLDGYMNIAMEQTEESVNGKVVNRYGDAF 80
Query: 72 IRGNNVLYISTSK 84
IRGNNVLYIS +
Sbjct: 81 IRGNNVLYISADE 93
>sp|Q2HAN0|LSM6_CHAGB U6 snRNA-associated Sm-like protein LSm6 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=LSM6 PE=3 SV=2
Length = 82
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/80 (62%), Positives = 59/80 (73%), Gaps = 3/80 (3%)
Query: 6 EKGSATT---KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQ 62
E G+AT K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+TEEYVNG
Sbjct: 2 ENGAATQGEGKDPSGFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGA 61
Query: 63 LKNKYGDAFIRGNNVLYIST 82
+ YGDAF+RGNNV+YIS
Sbjct: 62 KRRSYGDAFVRGNNVMYISA 81
>sp|Q1DRN0|LSM6_COCIM U6 snRNA-associated Sm-like protein LSm6 OS=Coccidioides immitis
(strain RS) GN=LSM6 PE=3 SV=1
Length = 80
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 59/75 (78%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK 66
+G+A ++ P+ FL I G V VKLNSGV Y+G L +DGYMNIA+E+T+E+VNG+L+
Sbjct: 4 RGAADSQDPSAFLSGITGASVTVKLNSGVVYKGELQSIDGYMNIALEKTQEFVNGKLRKS 63
Query: 67 YGDAFIRGNNVLYIS 81
YGD F+RGNNVLYIS
Sbjct: 64 YGDVFVRGNNVLYIS 78
>sp|A1DM27|LSM6_NEOFI U6 snRNA-associated Sm-like protein LSm6 OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=lsm6 PE=3 SV=2
Length = 80
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 58/74 (78%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S+ + P+ FL I G PV VKLNSGV YRG L +DGYMNIA+E++EE+V+G+L+ YG
Sbjct: 6 SSEGRDPSAFLGEIIGAPVTVKLNSGVVYRGELQSVDGYMNIALERSEEFVDGKLRRSYG 65
Query: 69 DAFIRGNNVLYIST 82
DAFIRGNNVLYIS
Sbjct: 66 DAFIRGNNVLYISA 79
>sp|Q4WNI0|LSM6_ASPFU U6 snRNA-associated Sm-like protein LSm6 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC
A1100) GN=lsm6 PE=3 SV=2
Length = 80
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 58/74 (78%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S+ + P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E++EE+V+G+LK YG
Sbjct: 6 SSEGRDPSAFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALERSEEFVDGKLKRSYG 65
Query: 69 DAFIRGNNVLYIST 82
DAFIRGNNVLYIS
Sbjct: 66 DAFIRGNNVLYISA 79
>sp|A1CE19|LSM6_ASPCL U6 snRNA-associated Sm-like protein LSm6 OS=Aspergillus clavatus
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 /
NRRL 1) GN=lsm6 PE=3 SV=2
Length = 78
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 59/77 (76%)
Query: 6 EKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 65
E S+ + P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+EQ++E+++G+L+
Sbjct: 2 ENISSEGRDPSAFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEQSKEFMDGKLRR 61
Query: 66 KYGDAFIRGNNVLYIST 82
YGDAFIRGNNVLYI+
Sbjct: 62 SYGDAFIRGNNVLYIAA 78
>sp|A7UXE4|LSM6_NEUCR U6 snRNA-associated Sm-like protein LSm6 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=lsm-6 PE=3 SV=2
Length = 82
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 56/77 (72%)
Query: 5 GEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLK 64
G + K P+ FL I G PV VKLNSGV Y+G L +DGYMNIA+E+TEE++NG +
Sbjct: 4 GATSQSEGKDPSGFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEFINGVKR 63
Query: 65 NKYGDAFIRGNNVLYIS 81
YGDAF+RGNNV+YIS
Sbjct: 64 RSYGDAFVRGNNVMYIS 80
>sp|A4RQ29|LSM6_MAGO7 U6 snRNA-associated Sm-like protein LSm6 OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=LSM6 PE=3
SV=1
Length = 83
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/81 (58%), Positives = 56/81 (69%), Gaps = 3/81 (3%)
Query: 6 EKGSATT---KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQ 62
E G+ T K P FL I G V VKLNSGV Y+G L +DGYMNIA+E+ EE+V GQ
Sbjct: 2 ENGTMTQGEGKDPTSFLGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQ 61
Query: 63 LKNKYGDAFIRGNNVLYISTS 83
K YGDAF+RGNNV+YI+ S
Sbjct: 62 KKRSYGDAFVRGNNVMYIAAS 82
>sp|Q0UWI9|LSM6_PHANO U6 snRNA-associated Sm-like protein LSm6 OS=Phaeosphaeria nodorum
(strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=LSM6 PE=3
SV=2
Length = 89
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 59/86 (68%), Gaps = 4/86 (4%)
Query: 1 MSTGGE----KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTE 56
MST GE +G+ ++ P+ FL I G PV VKLNSG+ Y+G L +DGYMNIA+E+ +
Sbjct: 1 MSTNGESPAPEGAGDSRDPSGFLSEIIGAPVTVKLNSGIVYKGDLQSVDGYMNIALERCK 60
Query: 57 EYVNGQLKNKYGDAFIRGNNVLYIST 82
E G++ +GDAF+RGNNV YIS
Sbjct: 61 EVAEGRVIRNWGDAFVRGNNVTYISA 86
>sp|P0CR24|LSM6_CRYNJ U6 snRNA-associated Sm-like protein LSm6 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=LSM6 PE=3 SV=1
Length = 88
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 52/69 (75%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
+P++FL++I G+ V V++ SGVDY G+L CLDGYMN+A+EQ EE+ YGD F+R
Sbjct: 16 SPSEFLRNIVGKRVKVRIGSGVDYTGLLTCLDGYMNVALEQAEEWAGEVKTAAYGDCFLR 75
Query: 74 GNNVLYIST 82
GNNVLYIS
Sbjct: 76 GNNVLYISA 84
>sp|P0CR25|LSM6_CRYNB U6 snRNA-associated Sm-like protein LSm6 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=LSM6 PE=3 SV=1
Length = 88
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 52/69 (75%)
Query: 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
+P++FL++I G+ V V++ SGVDY G+L CLDGYMN+A+EQ EE+ YGD F+R
Sbjct: 16 SPSEFLRNIVGKRVKVRIGSGVDYTGLLTCLDGYMNVALEQAEEWAGEVKTAAYGDCFLR 75
Query: 74 GNNVLYIST 82
GNNVLYIS
Sbjct: 76 GNNVLYISA 84
>sp|A6S5C9|LSM6_BOTFB U6 snRNA-associated Sm-like protein LSm6 OS=Botryotinia
fuckeliana (strain B05.10) GN=lsm6 PE=3 SV=2
Length = 85
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 54/72 (75%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P+ FL I G V+VKLN+ + ++G L +DGYMNIA+E+ EE+V+G+ K +GDAF+
Sbjct: 12 KDPSSFLSEIIGSKVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVHGDAFV 71
Query: 73 RGNNVLYISTSK 84
RGNNV+YIS +
Sbjct: 72 RGNNVMYISADE 83
>sp|A7F5M4|LSM6_SCLS1 U6 snRNA-associated Sm-like protein LSm6 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=lsm6
PE=3 SV=2
Length = 85
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 53/70 (75%)
Query: 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
K P+ FL I G V+VKLN+ + ++G L +DGYMNIA+E+ EE+V+G+ K +GDAF+
Sbjct: 12 KDPSSFLSDIIGSRVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVHGDAFV 71
Query: 73 RGNNVLYIST 82
RGNNV+YIS
Sbjct: 72 RGNNVMYISA 81
>sp|Q6BR90|LSM6_DEBHA U6 snRNA-associated Sm-like protein LSm6 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=LSM6 PE=3 SV=2
Length = 85
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 6 EKGSATTKT-PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLK 64
E S + T P+ FL I G V V+L++GV+Y G L +DGYMNI +++T+E+V G
Sbjct: 7 ESSSGSENTGPSVFLSEIIGSSVTVRLHNGVEYLGNLQSIDGYMNIVLDETKEFVGGDQA 66
Query: 65 NKYGDAFIRGNNVLYIS 81
YGD FIRGNNVLYIS
Sbjct: 67 RNYGDVFIRGNNVLYIS 83
>sp|A5DRQ6|LSM6_LODEL U6 snRNA-associated Sm-like protein LSm6 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=LSM6 PE=3 SV=2
Length = 80
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 49/67 (73%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P+ FL I G V VKL++GV+Y+G L +DGYMN+A+E +E ++ ++ YGD F+RG
Sbjct: 12 PSKFLGGIIGSSVKVKLHNGVEYQGDLQTIDGYMNVALENGKEVIDNKVTKHYGDVFLRG 71
Query: 75 NNVLYIS 81
NNVLYIS
Sbjct: 72 NNVLYIS 78
>sp|P62321|RUXF_XENLA Small nuclear ribonucleoprotein F OS=Xenopus laevis GN=snrpf PE=3
SV=1
Length = 86
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 66
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 67 NNVLYI 72
>sp|P62307|RUXF_MOUSE Small nuclear ribonucleoprotein F OS=Mus musculus GN=Snrpf PE=2
SV=1
Length = 86
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 66
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 67 NNVLYI 72
>sp|P62306|RUXF_HUMAN Small nuclear ribonucleoprotein F OS=Homo sapiens GN=SNRPF PE=1
SV=1
Length = 86
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 66
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 67 NNVLYI 72
>sp|Q3T0Z8|RUXF_BOVIN Small nuclear ribonucleoprotein F OS=Bos taurus GN=SNRPF PE=3
SV=2
Length = 86
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G++Y+G L +DGYMN+ + TEEY++G L G+ IR
Sbjct: 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 66
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 67 NNVLYI 72
>sp|Q9SUM2|RUXF_ARATH Probable small nuclear ribonucleoprotein F OS=Arabidopsis
thaliana GN=At4g30220 PE=2 SV=1
Length = 88
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL ++ G+ V+VKL G++Y+G LA +D YMN+ + TEEY++GQL G+ IR
Sbjct: 8 PKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRC 67
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 68 NNVLYV 73
>sp|Q24297|RUXF_DROME Small nuclear ribonucleoprotein F OS=Drosophila melanogaster
GN=SmF PE=3 SV=2
Length = 88
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 42/66 (63%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL + G+PV+VKL G +Y+G L +DGYMN+ + TEE + G + G+ IR
Sbjct: 9 PKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEVLIRC 68
Query: 75 NNVLYI 80
NNVLYI
Sbjct: 69 NNVLYI 74
>sp|P34659|RUXF_CAEEL Probable small nuclear ribonucleoprotein F OS=Caenorhabditis
elegans GN=snr-5 PE=1 SV=1
Length = 85
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P FL S+ G+ VV KL G++Y+G+L +D YMN+ + EEY++G + G+ IR
Sbjct: 9 PKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRC 68
Query: 75 NNVLYI 80
NNVLY+
Sbjct: 69 NNVLYV 74
>sp|A7TK72|LSM6_VANPO U6 snRNA-associated Sm-like protein LSm6 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=LSM6 PE=3
SV=1
Length = 83
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV--NGQLKNK 66
S TT FL +I G+PV VKL SG+ Y+G L +DG+MN+A+ T E+ N + +
Sbjct: 6 SGTTSVSTQFLANIIGKPVSVKLYSGMMYKGKLESIDGFMNVALSNTSEHFESNAHMLKR 65
Query: 67 Y-GDAFIRGNNVLYIS 81
Y D F+RG V+YIS
Sbjct: 66 YENDVFLRGTQVMYIS 81
>sp|Q6FYB6|LSM6_CANGA U6 snRNA-associated Sm-like protein LSm6 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=LSM6 PE=3 SV=2
Length = 79
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV---NGQLKNK 66
A FL +I G+PV VKL SG+ Y G+L +DG+MN+A+ +T E+ N L K
Sbjct: 2 AEESVSTQFLSNIIGKPVHVKLYSGMLYSGVLESIDGFMNVALSETREHYEHPNNNLLKK 61
Query: 67 YG-DAFIRGNNVLYIS 81
Y D F+RG V+YIS
Sbjct: 62 YASDVFLRGTQVMYIS 77
>sp|Q6CPS7|LSM6_KLULA U6 snRNA-associated Sm-like protein LSm6 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=LSM6 PE=3 SV=1
Length = 80
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 17 DFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV----NGQLKNKYGDAFI 72
FL++I G+PV VKL SG+ Y+G L +DG+MN+ M Q E+ NG L + F+
Sbjct: 10 SFLENIIGKPVYVKLFSGILYQGKLESIDGFMNVTMSQVSEHYEAEENGTLHKYPSEVFL 69
Query: 73 RGNNVLYIS 81
RG+ VLYIS
Sbjct: 70 RGSQVLYIS 78
>sp|Q54XP2|RUXF_DICDI Small nuclear ribonucleoprotein F OS=Dictyostelium discoideum
GN=snrpf PE=3 SV=1
Length = 91
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 14 TPADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 72
P FL ++G+ + V+L G++YRGILA +D YMN+ + TEE+++G K G+ I
Sbjct: 8 APKPFLYDLKGKKIAVRLKWGGMEYRGILASVDSYMNLQLAATEEWIDGANKGPLGEVLI 67
Query: 73 RGNNVLYI 80
R NNVL++
Sbjct: 68 RCNNVLFV 75
>sp|Q75BR7|LSM6_ASHGO U6 snRNA-associated Sm-like protein LSm6 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=LSM6 PE=3 SV=1
Length = 85
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 5/79 (6%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQ---L 63
+G A T + + FL +I G+PV VKL+SG+ Y+G L +DG+MN+A+ EY + +
Sbjct: 6 QGPAVTSS-STFLSNIIGKPVNVKLHSGMLYQGTLESIDGFMNVALVDASEYYESEQNPV 64
Query: 64 KNKY-GDAFIRGNNVLYIS 81
++Y D F+RG V+YIS
Sbjct: 65 IHRYESDVFLRGTQVMYIS 83
>sp|O59734|RUXF_SCHPO Small nuclear ribonucleoprotein F OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=smf1 PE=1 SV=1
Length = 78
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
S P FL+ + G+PV+V+L G +Y+G L +D YMN+ + EE V+G G
Sbjct: 2 SFVPVNPKPFLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLG 61
Query: 69 DAFIRGNNVLYISTS 83
+ IR NNVL++ S
Sbjct: 62 EILIRCNNVLWVGES 76
>sp|P57670|RUXX_THEAC Putative snRNP Sm-like protein OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1240 PE=3 SV=1
Length = 83
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK 66
K A K P D LKS R V++ + +Y GIL D YMNI ++ E +NG+ K
Sbjct: 3 KTPANVK-PMDVLKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEIINGENKGV 61
Query: 67 YGDAFIRGNNVLYISTSK 84
Y +RG+NV+++S SK
Sbjct: 62 YDRVLVRGDNVIFVSPSK 79
>sp|O26745|RUXX_METTH Putative snRNP Sm-like protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_649 PE=1 SV=1
Length = 81
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGD 69
+ P D L + PV++KL ++RG+L D +MN+ + EE +G++ + G
Sbjct: 9 VNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGT 68
Query: 70 AFIRGNNVLYIS 81
IRG+N++YIS
Sbjct: 69 VLIRGDNIVYIS 80
>sp|Q97BU5|RUXX_THEVO Putative snRNP Sm-like protein OS=Thermoplasma volcanium (strain
ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0360 PE=3 SV=2
Length = 83
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK 66
K A TK P D LK+ R V++ + +Y GIL D YMN+ ++ E +NG+ K
Sbjct: 3 KTVANTK-PMDVLKNALSRNVLIDVKGNREYSGILEGYDVYMNVVLQNASEIINGENKGV 61
Query: 67 YGDAFIRGNNVLYISTSK 84
+ +RG+NV+++S SK
Sbjct: 62 FDRILVRGDNVIFVSPSK 79
>sp|P54999|RUXF_YEAST Small nuclear ribonucleoprotein F OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMX3 PE=1 SV=1
Length = 86
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLN-SGVDYRGILACLDGYMNIAMEQTEEYV 59
MS + + P FLK + V VKL + +YRG L D Y N+ + + EE+V
Sbjct: 1 MSESSDISAMQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFV 60
Query: 60 NGQLKNKYGDAFIRGNNVLYI 80
G G+ FIR NNVLYI
Sbjct: 61 AGVSHGTLGEIFIRCNNVLYI 81
>sp|Q465S1|RUXX_METBF Putative snRNP Sm-like protein OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3500 PE=3 SV=1
Length = 72
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P D L + PV+V+L ++RG L D +MN+ ++ EE G++ +K+G IRG
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREGEVVSKFGSVVIRG 64
Query: 75 NNVLYIS 81
+NV+Y+S
Sbjct: 65 DNVVYVS 71
>sp|Q06406|LSM6_YEAST U6 snRNA-associated Sm-like protein LSm6 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM6 PE=1
SV=2
Length = 86
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM----EQTEEYVNGQ 62
+GS TT +FL I G+ V VKL SG+ Y G L +DG+MN+A+ E E N
Sbjct: 8 EGSVTT----EFLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNNNKL 63
Query: 63 LKNKYGDAFIRGNNVLYISTSK 84
L D F+RG V+YIS K
Sbjct: 64 LNKFNSDVFLRGTQVMYISEQK 85
>sp|A6ZYX7|LSM6_YEAS7 U6 snRNA-associated Sm-like protein LSm6 OS=Saccharomyces
cerevisiae (strain YJM789) GN=LSM6 PE=3 SV=1
Length = 86
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 7 KGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM----EQTEEYVNGQ 62
+GS TT +FL I G+ V VKL SG+ Y G L +DG+MN+A+ E E N
Sbjct: 8 EGSVTT----EFLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNNNKL 63
Query: 63 LKNKYGDAFIRGNNVLYISTSK 84
L D F+RG V+YIS K
Sbjct: 64 LNKFNSDVFLRGTQVMYISEQK 85
>sp|Q8TL47|RUXX_METAC Putative snRNP Sm-like protein OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=MA_3195 PE=3 SV=1
Length = 72
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P D L + PV+V+L ++RG L D +MN+ ++ EE +G++ +K+ IRG
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELRDGEVVSKFSSVVIRG 64
Query: 75 NNVLYIS 81
+NV+Y+S
Sbjct: 65 DNVVYVS 71
>sp|Q12U30|RUXX_METBU Putative snRNP Sm-like protein OS=Methanococcoides burtonii
(strain DSM 6242) GN=Mbur_2181 PE=3 SV=1
Length = 72
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P D L V+V+L ++RG+L D +MN+ +++ EE +G++ K G IRG
Sbjct: 5 PLDILNDALNTSVIVRLKGAREFRGVLQGYDVHMNLVLDEAEELKDGEIVRKIGGVVIRG 64
Query: 75 NNVLYIS 81
+NV+Y+S
Sbjct: 65 DNVVYVS 71
>sp|Q9P5Z8|RUXF_NEUCR Probable small nuclear ribonucleoprotein F OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=B2O8.190 PE=3 SV=1
Length = 90
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 15 PADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIR 73
P FL+ + V ++L G +Y G L +D YMNI + T+EY+N + G IR
Sbjct: 8 PRPFLQDLVNSFVTIRLKWGETEYVGRLVSIDSYMNIQLSDTKEYINRKFTGALGQVLIR 67
Query: 74 GNNVLYISTSKRTLADG 90
NNVLYI + G
Sbjct: 68 CNNVLYIKKADEAETSG 84
>sp|Q8PZZ9|RUXX_METMA Putative snRNP Sm-like protein OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_0339 PE=3 SV=1
Length = 72
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P D L + PV+V+L ++RG L D +MN+ ++ EE G++ +K+ IRG
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREGEVVSKFSSVVIRG 64
Query: 75 NNVLYIS 81
+NV+Y+S
Sbjct: 65 DNVVYVS 71
>sp|O29386|RUXX_ARCFU Putative snRNP Sm-like protein OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0875 PE=1 SV=1
Length = 77
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P D L PV+V+L G ++RG L D +MN+ + EE NG++ K G IRG
Sbjct: 5 PLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRG 64
Query: 75 NNVLYISTSK 84
+ V+++S +
Sbjct: 65 DTVVFVSPAP 74
>sp|Q0W8R9|RUXX_UNCMA Putative snRNP Sm-like protein OS=Uncultured methanogenic
archaeon RC-I GN=UNCMA_29510 PE=3 SV=1
Length = 72
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
++ P D L PV+V+L G ++RG L D +MN+ ++ EE + K G
Sbjct: 2 SQRPLDVLNEALNSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEELKENEASRKLGTII 61
Query: 72 IRGNNVLYIS 81
+RG+ V+Y+S
Sbjct: 62 VRGDTVVYVS 71
>sp|Q8U0P4|RUXX_PYRFU Putative snRNP Sm-like protein OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF1542 PE=3
SV=1
Length = 76
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
P D + + V+V L G ++RG L D ++N+ + E +G++ KYG IRG
Sbjct: 5 PLDVIHKSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLANAELLQDGEVVKKYGKIVIRG 64
Query: 75 NNVLYISTSKR 85
+NVL IS ++
Sbjct: 65 DNVLAISPTEE 75
>sp|O74016|RUXX_PYRHO Putative snRNP Sm-like protein OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 /
OT-3) GN=PH1518.2 PE=3 SV=1
Length = 75
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
+ P D + + V+V L G ++RG L D ++N+ + E +G++ KYG
Sbjct: 2 AERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMVQDGEVVKKYGKIV 61
Query: 72 IRGNNVLYISTSK 84
IRG+NVL IS ++
Sbjct: 62 IRGDNVLAISPTE 74
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,033,161
Number of Sequences: 539616
Number of extensions: 1190322
Number of successful extensions: 2342
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2247
Number of HSP's gapped (non-prelim): 106
length of query: 91
length of database: 191,569,459
effective HSP length: 61
effective length of query: 30
effective length of database: 158,652,883
effective search space: 4759586490
effective search space used: 4759586490
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)