Query 034564
Match_columns 91
No_of_seqs 103 out of 1090
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 06:19:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034564.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034564hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s6n_F Small nuclear ribonucle 100.0 1.3E-27 4.3E-32 147.9 11.6 80 11-90 3-82 (86)
2 1i8f_A Putative snRNP SM-like 99.9 3E-27 1E-31 144.5 9.8 80 1-84 1-80 (81)
3 1d3b_A Protein (small nuclear 99.9 7.1E-27 2.4E-31 141.2 10.6 74 11-84 2-75 (75)
4 1n9r_A SMF, small nuclear ribo 99.9 3.8E-27 1.3E-31 147.7 9.3 84 1-84 8-92 (93)
5 1i4k_A Putative snRNP SM-like 99.9 1.6E-26 5.6E-31 139.7 11.3 74 13-86 3-76 (77)
6 1h64_1 SnRNP SM-like protein; 99.9 2.3E-26 7.8E-31 138.5 11.1 73 13-85 3-75 (75)
7 1ljo_A Archaeal SM-like protei 99.9 2.8E-26 9.6E-31 138.8 11.5 74 12-85 3-77 (77)
8 1mgq_A SM-like protein; LSM, R 99.9 3.8E-26 1.3E-30 140.2 11.0 71 12-82 13-83 (83)
9 4emk_B U6 snRNA-associated SM- 99.9 1.4E-26 4.7E-31 139.8 8.8 74 12-85 2-75 (75)
10 1th7_A SnRNP-2, small nuclear 99.9 2.3E-26 7.9E-31 140.5 9.3 76 10-85 5-80 (81)
11 4emk_A U6 snRNA-associated SM- 99.9 2.8E-25 9.5E-30 139.6 11.2 77 10-86 16-93 (94)
12 4emh_A Probable U6 snRNA-assoc 99.9 1.2E-25 4.2E-30 143.7 9.0 80 9-88 11-91 (105)
13 3s6n_G Small nuclear ribonucle 99.9 2.6E-25 8.9E-30 134.5 8.4 73 13-85 3-75 (76)
14 3bw1_A SMX4 protein, U6 snRNA- 99.9 1.4E-24 4.8E-29 136.5 10.6 77 12-88 8-91 (96)
15 1d3b_B Protein (small nuclear 99.9 4.7E-25 1.6E-29 137.0 7.5 79 12-90 2-90 (91)
16 2y9a_D Small nuclear ribonucle 99.9 1.8E-24 6.2E-29 142.1 10.5 78 11-88 2-79 (126)
17 3s6n_E Small nuclear ribonucle 99.9 5.6E-25 1.9E-29 137.7 7.6 78 7-84 9-91 (92)
18 1b34_A Protein (small nuclear 99.9 2.5E-24 8.6E-29 140.0 10.2 73 14-86 2-74 (119)
19 4emg_A Probable U6 snRNA-assoc 99.9 4.4E-24 1.5E-28 133.7 10.2 74 10-83 5-91 (93)
20 2fwk_A U6 snRNA-associated SM- 99.9 2.3E-24 7.8E-29 140.5 7.6 78 10-87 24-116 (121)
21 4emk_C U6 snRNA-associated SM- 99.9 1E-23 3.5E-28 136.2 9.7 76 13-88 22-104 (113)
22 1b34_B Protein (small nuclear 99.9 1.9E-22 6.5E-27 130.9 9.6 77 11-87 24-116 (118)
23 3pgw_B SM B; protein-RNA compl 99.9 5.2E-22 1.8E-26 141.1 10.7 78 12-89 2-89 (231)
24 1m5q_A SMAP3, small nuclear ri 99.8 8E-21 2.7E-25 125.3 9.1 67 16-86 2-68 (130)
25 1y96_A Gemin6, SIP2, GEM-assoc 99.1 2.4E-10 8.2E-15 70.4 8.1 69 13-88 7-76 (86)
26 2vxe_A CG10686-PA; EDC3, CAR-1 97.0 0.0081 2.8E-07 36.7 8.6 65 21-85 10-84 (88)
27 2ylb_A Protein HFQ; RNA-bindin 96.9 0.0012 4.3E-08 39.1 4.3 56 16-84 11-68 (74)
28 2vc8_A Enhancer of mRNA-decapp 96.9 0.0046 1.6E-07 37.5 6.5 63 20-85 5-69 (84)
29 3ahu_A Protein HFQ; SM-like mo 96.8 0.0023 7.9E-08 38.4 4.8 36 16-51 13-50 (78)
30 1kq1_A HFQ, HOST factor for Q 96.8 0.0029 1E-07 37.8 5.0 37 16-52 9-47 (77)
31 4a53_A EDC3; RNA binding prote 96.7 0.0065 2.2E-07 39.3 6.5 55 20-85 8-64 (125)
32 2fb7_A SM-like protein, LSM-14 96.7 0.0069 2.4E-07 37.5 6.3 69 18-86 13-91 (95)
33 1u1s_A HFQ protein; SM-like ba 96.6 0.0032 1.1E-07 38.0 4.6 37 16-52 9-47 (82)
34 3sb2_A Protein HFQ; SM-like, R 96.5 0.0036 1.2E-07 37.6 4.3 55 16-83 10-66 (79)
35 2qtx_A Uncharacterized protein 96.5 0.006 2.1E-07 35.9 4.8 29 23-51 24-52 (71)
36 1y96_B Gemin7, SIP3, GEM-assoc 96.3 0.02 6.8E-07 34.7 6.7 64 15-83 20-84 (85)
37 2y90_A Protein HFQ; RNA-bindin 96.2 0.0051 1.7E-07 38.7 3.9 37 16-52 11-49 (104)
38 1ycy_A Conserved hypothetical 95.3 0.13 4.3E-06 29.7 7.0 62 16-82 8-69 (71)
39 3hfo_A SSR3341 protein; HFQ, S 94.4 0.27 9.4E-06 28.6 6.9 60 12-82 6-68 (70)
40 3hfn_A ASL2047 protein; HFQ, S 94.3 0.31 1.1E-05 28.5 7.0 56 16-82 13-70 (72)
41 3rux_A BIRA bifunctional prote 92.3 0.24 8.2E-06 35.2 5.1 34 22-55 222-255 (270)
42 1ib8_A Conserved protein SP14. 91.5 0.29 9.8E-06 32.5 4.5 29 19-47 99-131 (164)
43 2rm4_A CG6311-PB, DM EDC3; enh 90.8 1.9 6.4E-05 26.7 8.5 67 20-89 8-76 (103)
44 2eay_A Biotin [acetyl-COA-carb 89.3 0.33 1.1E-05 33.6 3.4 47 22-74 186-232 (233)
45 1bia_A BIRA bifunctional prote 87.8 1.4 4.8E-05 31.6 6.1 48 22-74 271-318 (321)
46 2ej9_A Putative biotin ligase; 83.0 2.2 7.5E-05 29.4 5.0 32 22-54 190-221 (237)
47 4hcz_A PHD finger protein 1; p 82.3 2.4 8.3E-05 23.7 4.0 25 23-47 6-30 (58)
48 2dxu_A Biotin--[acetyl-COA-car 78.9 1.8 6E-05 30.0 3.3 31 23-55 188-218 (235)
49 3rkx_A Biotin-[acetyl-COA-carb 77.1 3.8 0.00013 29.6 4.8 33 22-55 277-309 (323)
50 2e12_A SM-like motif, hypothet 75.8 3.3 0.00011 25.3 3.5 24 18-41 21-45 (101)
51 3bfm_A Biotin protein ligase-l 74.1 5.1 0.00018 27.4 4.6 29 22-55 192-220 (235)
52 2xk0_A Polycomb protein PCL; t 73.8 7.8 0.00027 22.3 4.6 24 22-45 17-40 (69)
53 3by7_A Uncharacterized protein 72.2 14 0.00049 22.6 6.5 56 28-85 7-77 (100)
54 2eqj_A Metal-response element- 69.9 8 0.00027 22.1 4.0 25 23-47 16-40 (66)
55 2m0o_A PHD finger protein 1; t 66.6 3.1 0.0001 24.6 1.8 26 22-47 28-53 (79)
56 2qqr_A JMJC domain-containing 63.6 9.6 0.00033 24.1 3.8 24 22-45 7-30 (118)
57 2e5p_A Protein PHF1, PHD finge 59.7 17 0.00057 20.9 4.0 25 23-47 12-36 (68)
58 1sg5_A ORF, hypothetical prote 57.9 5.2 0.00018 23.8 1.8 23 19-41 20-42 (86)
59 2e5q_A PHD finger protein 19; 52.1 15 0.0005 20.8 2.9 25 23-47 10-34 (63)
60 1ky9_A Protease DO, DEGP, HTRA 49.4 26 0.00089 26.1 4.8 31 25-55 111-141 (448)
61 4a8c_A Periplasmic PH-dependen 48.8 28 0.00096 25.8 4.9 31 25-55 88-118 (436)
62 3fb9_A Uncharacterized protein 41.3 45 0.0016 20.0 4.1 29 16-44 17-49 (90)
63 3stj_A Protease DEGQ; serine p 39.4 40 0.0014 24.1 4.4 31 25-55 88-118 (345)
64 3sti_A Protease DEGQ; serine p 37.4 45 0.0015 22.7 4.2 31 25-55 88-118 (245)
65 3kl9_A PEPA, glutamyl aminopep 36.6 28 0.00097 25.2 3.1 25 20-44 95-119 (355)
66 3pv2_A DEGQ; trypsin fold, PDZ 35.8 37 0.0013 25.3 3.8 31 25-55 102-132 (451)
67 3uby_A DNA-3-methyladenine gly 35.5 64 0.0022 22.2 4.7 34 15-48 16-49 (219)
68 1x4r_A PARP14 protein; WWE dom 33.9 2.5 8.6E-05 26.0 -2.5 20 38-57 34-53 (99)
69 1zq1_A Glutamyl-tRNA(Gln) amid 32.9 29 0.00098 26.3 2.8 40 15-54 3-53 (438)
70 3lgi_A Protease DEGS; stress-s 32.7 69 0.0023 21.3 4.5 31 25-55 77-107 (237)
71 3tjo_A Serine protease HTRA1; 32.4 70 0.0024 21.3 4.5 31 25-55 87-117 (231)
72 1te0_A Protease DEGS; two doma 32.1 64 0.0022 22.5 4.4 31 25-55 66-96 (318)
73 2wr8_A Putative uncharacterize 31.7 44 0.0015 23.6 3.4 19 34-52 171-189 (259)
74 1lcy_A HTRA2 serine protease; 31.6 68 0.0023 22.5 4.5 31 25-55 71-101 (325)
75 2zbv_A Uncharacterized conserv 31.4 47 0.0016 23.4 3.5 19 34-52 167-185 (263)
76 1y8t_A Hypothetical protein RV 31.2 63 0.0021 22.5 4.2 31 25-55 64-94 (324)
77 3tee_A Flagella basal BODY P-r 30.5 35 0.0012 23.2 2.7 23 21-43 168-190 (219)
78 2xdp_A Lysine-specific demethy 29.5 73 0.0025 20.0 3.8 23 23-45 67-89 (123)
79 3qx1_A FAS-associated factor 1 26.7 36 0.0012 19.2 1.9 22 25-46 8-29 (84)
80 2dir_A Thump domain-containing 25.9 53 0.0018 19.1 2.6 23 24-46 74-96 (98)
81 3dgp_B RNA polymerase II trans 25.2 21 0.00073 20.5 0.7 13 35-47 2-14 (71)
82 3num_A Serine protease HTRA1; 24.4 1.3E+02 0.0045 21.0 4.9 31 25-55 70-100 (332)
83 3qo6_A Protease DO-like 1, chl 24.1 92 0.0032 22.0 4.1 31 25-55 77-107 (348)
84 4fln_A Protease DO-like 2, chl 23.1 84 0.0029 24.3 3.9 30 25-54 97-127 (539)
85 3mkv_A Putative amidohydrolase 22.4 1.4E+02 0.0046 19.5 4.4 35 49-83 5-40 (426)
86 2dzk_A UBX domain-containing p 22.1 73 0.0025 19.1 2.8 21 25-45 14-34 (109)
87 3hpa_A Amidohydrolase; signatu 20.8 1.9E+02 0.0064 20.0 5.1 36 48-83 29-67 (479)
88 3frn_A Flagellar protein FLGA; 20.5 98 0.0033 22.1 3.5 22 21-42 237-259 (278)
89 3ggm_A Uncharacterized protein 20.5 1.2E+02 0.004 16.5 4.1 36 48-83 4-39 (81)
90 2equ_A PHD finger protein 20-l 20.4 1.3E+02 0.0044 17.0 4.0 25 23-47 12-36 (74)
91 3p8d_A Medulloblastoma antigen 20.1 1.3E+02 0.0044 16.8 4.0 25 23-47 9-33 (67)
No 1
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.95 E-value=1.3e-27 Score=147.94 Aligned_cols=80 Identities=44% Similarity=0.840 Sum_probs=70.8
Q ss_pred cCCChHHHHhhcCCCeEEEEEcCCcEEEEEEEEEcCCCceeeeeeEEEecCeeeeeeceEEEeCCcEEEEEeCCCccccC
Q 034564 11 TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLADG 90 (91)
Q Consensus 11 ~~~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~g~~~~~l~~v~IRG~~I~~i~~~~~~~~~~ 90 (91)
.+..|+++|++++|++|+|+|++|++|.|+|.+||+|||++|+||.++.+|+..++++.++|||++|++|+++|...+.+
T Consensus 3 ~~~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~g~~~~~lg~v~IRG~nI~~i~~~d~~~~~~ 82 (86)
T 3s6n_F 3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEEDG 82 (86)
T ss_dssp CCCCHHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEESSEEECGGGEEEEEECC------
T ss_pred cCcCcHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcCCceeeEccEEEEeCCeEEEEEeCCcccccc
Confidence 36789999999999999999999999999999999999999999999888877889999999999999999999887754
No 2
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.95 E-value=3e-27 Score=144.47 Aligned_cols=80 Identities=34% Similarity=0.439 Sum_probs=68.2
Q ss_pred CCCCCccCCccCCChHHHHhhcCCCeEEEEEcCCcEEEEEEEEEcCCCceeeeeeEEEecCeeeeeeceEEEeCCcEEEE
Q 034564 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 80 (91)
Q Consensus 1 ms~~~~~~~~~~~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~g~~~~~l~~v~IRG~~I~~i 80 (91)
||.+..|. +..|+.+|.++++++|+|+|+||++|.|+|.+||+|||++|+||.|+ ++...+++|.++|||++|++|
T Consensus 1 m~~~~~~~---~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~~~~~~~lg~v~iRG~~I~~i 76 (81)
T 1i8f_A 1 MASDISKC---FATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-IDGNVYKRGTMVVRGENVLFI 76 (81)
T ss_dssp ------------CCHHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-ETTEEEEEEEEEECGGGEEEE
T ss_pred CCcccCcc---ccchHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-cCCcccCCCEEEECCCEEEEE
Confidence 77765664 78999999999999999999999999999999999999999999998 666778999999999999999
Q ss_pred EeCC
Q 034564 81 STSK 84 (91)
Q Consensus 81 ~~~~ 84 (91)
+++|
T Consensus 77 ~~~d 80 (81)
T 1i8f_A 77 SPVP 80 (81)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9886
No 3
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.94 E-value=7.1e-27 Score=141.22 Aligned_cols=74 Identities=22% Similarity=0.332 Sum_probs=68.0
Q ss_pred cCCChHHHHhhcCCCeEEEEEcCCcEEEEEEEEEcCCCceeeeeeEEEecCeeeeeeceEEEeCCcEEEEEeCC
Q 034564 11 TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSK 84 (91)
Q Consensus 11 ~~~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~g~~~~~l~~v~IRG~~I~~i~~~~ 84 (91)
....|..||++++|++|+|+|++|++|+|+|.+||+|||++|+||+++..+.+.++++.++|||++|+||++||
T Consensus 2 ~~~~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~~~~~~lg~v~IRG~nI~~i~lPd 75 (75)
T 1d3b_A 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGCKIRFLILPD 75 (75)
T ss_dssp --CCHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEECGGGEEEEEECC
T ss_pred CccCHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCCCcEEEcCeEEEeCCEEEEEEcCC
Confidence 35789999999999999999999999999999999999999999999865545789999999999999999986
No 4
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.94 E-value=3.8e-27 Score=147.74 Aligned_cols=84 Identities=37% Similarity=0.616 Sum_probs=63.7
Q ss_pred CCCCCccCCccCCChHHHHhhcCCCeEEEEEcCC-cEEEEEEEEEcCCCceeeeeeEEEecCeeeeeeceEEEeCCcEEE
Q 034564 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLY 79 (91)
Q Consensus 1 ms~~~~~~~~~~~~p~~~L~~~~~k~V~V~L~~g-~~~~G~L~~~D~~mNlvL~~~~e~~~g~~~~~l~~v~IRG~~I~~ 79 (91)
||.+.......+..|.++|.+++|++|+|+|++| ++|+|+|.+||+|||++|+||+|+.++++.+++|.++|||++|++
T Consensus 8 ~~~~~~~~~~~~~~P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~~~~~~lg~v~IRG~nI~~ 87 (93)
T 1n9r_A 8 MSESSDISAMQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIFIRCNNVLY 87 (93)
T ss_dssp ------------------CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETTEEEEECCSEEECGGGEEE
T ss_pred cccCccccccccCChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCCCeEeEcCEEEEcCCeEEE
Confidence 6776666667789999999999999999999999 999999999999999999999998888888899999999999999
Q ss_pred EEeCC
Q 034564 80 ISTSK 84 (91)
Q Consensus 80 i~~~~ 84 (91)
|.+++
T Consensus 88 I~~~~ 92 (93)
T 1n9r_A 88 IRELP 92 (93)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99876
No 5
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.94 E-value=1.6e-26 Score=139.67 Aligned_cols=74 Identities=34% Similarity=0.583 Sum_probs=69.4
Q ss_pred CChHHHHhhcCCCeEEEEEcCCcEEEEEEEEEcCCCceeeeeeEEEecCeeeeeeceEEEeCCcEEEEEeCCCc
Q 034564 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRT 86 (91)
Q Consensus 13 ~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~g~~~~~l~~v~IRG~~I~~i~~~~~~ 86 (91)
..|.++|++++|++|+|+|+||++|.|+|.+||+|||++|+||.|+..+...+++|.++|||++|++|.++|..
T Consensus 3 ~~P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~d~~ 76 (77)
T 1i4k_A 3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAPGG 76 (77)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEECC--
T ss_pred ccHHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecCCcEeECCEEEECCCEEEEEEeCCCC
Confidence 57999999999999999999999999999999999999999999988787888999999999999999999875
No 6
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.94 E-value=2.3e-26 Score=138.53 Aligned_cols=73 Identities=32% Similarity=0.572 Sum_probs=68.3
Q ss_pred CChHHHHhhcCCCeEEEEEcCCcEEEEEEEEEcCCCceeeeeeEEEecCeeeeeeceEEEeCCcEEEEEeCCC
Q 034564 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 85 (91)
Q Consensus 13 ~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~g~~~~~l~~v~IRG~~I~~i~~~~~ 85 (91)
..|.++|.+++|++|+|+|+||++|.|+|.+||+|||++|+||.|+..+...+++|.++|||++|++|.++++
T Consensus 3 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~e 75 (75)
T 1h64_1 3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPTEE 75 (75)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEEC--
T ss_pred chHHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeCCceeECCEEEECCCEEEEEEeCCC
Confidence 5799999999999999999999999999999999999999999998877788999999999999999998874
No 7
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.94 E-value=2.8e-26 Score=138.84 Aligned_cols=74 Identities=26% Similarity=0.446 Sum_probs=69.1
Q ss_pred CCChHHHHhhcCCCeEEEEEcCC-cEEEEEEEEEcCCCceeeeeeEEEecCeeeeeeceEEEeCCcEEEEEeCCC
Q 034564 12 TKTPADFLKSIRGRPVVVKLNSG-VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 85 (91)
Q Consensus 12 ~~~p~~~L~~~~~k~V~V~L~~g-~~~~G~L~~~D~~mNlvL~~~~e~~~g~~~~~l~~v~IRG~~I~~i~~~~~ 85 (91)
+..|.++|.++++++|+|+|++| ++|.|+|.+||+|||++|+||+|+..++..+++|.++|||++|++|+++|+
T Consensus 3 m~~P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~nI~~i~~~de 77 (77)
T 1ljo_A 3 MVLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIVLRGNNVVLIQPQEE 77 (77)
T ss_dssp CCCHHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEEC--
T ss_pred ccchHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecCCcEeECCeEEEeCCeEEEEEeCCC
Confidence 46899999999999999999999 999999999999999999999998878788999999999999999999874
No 8
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.94 E-value=3.8e-26 Score=140.23 Aligned_cols=71 Identities=34% Similarity=0.684 Sum_probs=68.0
Q ss_pred CCChHHHHhhcCCCeEEEEEcCCcEEEEEEEEEcCCCceeeeeeEEEecCeeeeeeceEEEeCCcEEEEEe
Q 034564 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIST 82 (91)
Q Consensus 12 ~~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~g~~~~~l~~v~IRG~~I~~i~~ 82 (91)
+..|+.+|.+++|++|+|+|+||++|.|+|.+||+|||++|+||.|+..+...+++|.++|||++|++|++
T Consensus 13 ~~~P~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~IRG~~I~~i~p 83 (83)
T 1mgq_A 13 VQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYISP 83 (83)
T ss_dssp TTCTTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEC
T ss_pred CcChHHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecCCcccCCCEEEECCCEEEEEEC
Confidence 68999999999999999999999999999999999999999999998888788999999999999999974
No 9
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.94 E-value=1.4e-26 Score=139.75 Aligned_cols=74 Identities=61% Similarity=1.130 Sum_probs=68.7
Q ss_pred CCChHHHHhhcCCCeEEEEEcCCcEEEEEEEEEcCCCceeeeeeEEEecCeeeeeeceEEEeCCcEEEEEeCCC
Q 034564 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 85 (91)
Q Consensus 12 ~~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~g~~~~~l~~v~IRG~~I~~i~~~~~ 85 (91)
+..|+++|++++|++|+|+|+||++|.|+|.+||+|||++|+||.|+.+++..+++|.++|||++|++|++.|+
T Consensus 2 ~~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~~ 75 (75)
T 4emk_B 2 DSSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNVLYVSALDD 75 (75)
T ss_dssp CSHHHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEETTEEEEEEEEEEEEGGGSSEEEEC--
T ss_pred CCchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEecCCcccEecEEEEcCCeEEEEEecCC
Confidence 36899999999999999999999999999999999999999999998888778899999999999999998763
No 10
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.94 E-value=2.3e-26 Score=140.46 Aligned_cols=76 Identities=30% Similarity=0.423 Sum_probs=69.5
Q ss_pred ccCCChHHHHhhcCCCeEEEEEcCCcEEEEEEEEEcCCCceeeeeeEEEecCeeeeeeceEEEeCCcEEEEEeCCC
Q 034564 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 85 (91)
Q Consensus 10 ~~~~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~g~~~~~l~~v~IRG~~I~~i~~~~~ 85 (91)
..+..|.++|.++++++|+|+|+||++|.|+|.+||+|||++|+||.|+..+...+++|.++|||++|++|.+++.
T Consensus 5 ~~~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~~ 80 (81)
T 1th7_A 5 FLAETAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVIRGDNVILISPLQT 80 (81)
T ss_dssp TTCHHHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSSCEEEEEEEEECGGGEEEEEEC--
T ss_pred ccccchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecCCceeECCEEEECCCEEEEEEecCC
Confidence 4467899999999999999999999999999999999999999999998777677899999999999999999875
No 11
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.93 E-value=2.8e-25 Score=139.59 Aligned_cols=77 Identities=21% Similarity=0.405 Sum_probs=67.4
Q ss_pred ccCCChHHHHhhcCCCeEEEEEcCCcEEEEEEEEEcCCCceeeeeeEEEe-cCeeeeeeceEEEeCCcEEEEEeCCCc
Q 034564 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV-NGQLKNKYGDAFIRGNNVLYISTSKRT 86 (91)
Q Consensus 10 ~~~~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~-~g~~~~~l~~v~IRG~~I~~i~~~~~~ 86 (91)
.....|+.+|.++++++|+|+|++|++|.|+|.+||+||||+|+||+|+. +++..+.+|.++|||++|++|.+..+.
T Consensus 16 ~~~~~Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~IRG~nI~~i~p~~~p 93 (94)
T 4emk_A 16 SMTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGMCMLIPGGKP 93 (94)
T ss_dssp ----CHHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTTCCEEEEEEEEECSTTEEEEEECC--
T ss_pred cccccCHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCCCcEeEcCEEEEcCCEEEEEEeCCCC
Confidence 34688999999999999999999999999999999999999999999987 666678999999999999999987543
No 12
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.93 E-value=1.2e-25 Score=143.67 Aligned_cols=80 Identities=29% Similarity=0.588 Sum_probs=55.9
Q ss_pred CccCCChHHHHhhcCCCeEEEEEcCCcEEEEEEEEEcCCCceeeeeeEEEe-cCeeeeeeceEEEeCCcEEEEEeCCCcc
Q 034564 9 SATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV-NGQLKNKYGDAFIRGNNVLYISTSKRTL 87 (91)
Q Consensus 9 ~~~~~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~-~g~~~~~l~~v~IRG~~I~~i~~~~~~~ 87 (91)
+..+..|+.||++++|++|+|+|++|++|.|+|.+||+||||+|+||+|.. +|+..++++.++|||++|+||.+||...
T Consensus 11 ~~~~~~p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~~~~lg~v~IRG~nI~~I~~pd~l~ 90 (105)
T 4emh_A 11 SQDPMLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDEVL 90 (105)
T ss_dssp ---------------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEEECGGGEEEEEC-----
T ss_pred cCCCCcHHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCCceeeEcCeEEEeCCeEEEEecCHHHh
Confidence 445789999999999999999999999999999999999999999999974 5656789999999999999999998765
Q ss_pred c
Q 034564 88 A 88 (91)
Q Consensus 88 ~ 88 (91)
+
T Consensus 91 d 91 (105)
T 4emh_A 91 S 91 (105)
T ss_dssp -
T ss_pred h
Confidence 3
No 13
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.92 E-value=2.6e-25 Score=134.50 Aligned_cols=73 Identities=29% Similarity=0.496 Sum_probs=53.3
Q ss_pred CChHHHHhhcCCCeEEEEEcCCcEEEEEEEEEcCCCceeeeeeEEEecCeeeeeeceEEEeCCcEEEEEeCCC
Q 034564 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 85 (91)
Q Consensus 13 ~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~g~~~~~l~~v~IRG~~I~~i~~~~~ 85 (91)
.+|.++|.+++|++|+|+|+||++|.|+|.+||+|||++|+||.|+..++..+++|.++|||++|++|++.|.
T Consensus 3 ~~~~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~v~iRG~~I~~i~~~d~ 75 (76)
T 3s6n_G 3 KAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALER 75 (76)
T ss_dssp -----------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC----CBSSEEECSSSEEEEEC---
T ss_pred CcchHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccCCcEeEcCEEEECCCeEEEEEeccC
Confidence 3467899999999999999999999999999999999999999998666667899999999999999998875
No 14
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.4e-24 Score=136.53 Aligned_cols=77 Identities=29% Similarity=0.375 Sum_probs=67.4
Q ss_pred CCChHHHHhhcCCCeEEEEEcCCcEEEEEEEEEcCCCceeeeeeEEEec-------CeeeeeeceEEEeCCcEEEEEeCC
Q 034564 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN-------GQLKNKYGDAFIRGNNVLYISTSK 84 (91)
Q Consensus 12 ~~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~-------g~~~~~l~~v~IRG~~I~~i~~~~ 84 (91)
+.-|..+|.+++|++|+|+|++|++|.|+|.|||+||||+|+||.|+.. +...+.+|.++|||++|++|.+++
T Consensus 8 ~~~p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I~~~d 87 (96)
T 3bw1_A 8 METPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTPS 87 (96)
T ss_dssp CCCHHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEEECCC
T ss_pred hhhHHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEEEecC
Confidence 4679999999999999999999999999999999999999999999742 355688999999999999999998
Q ss_pred Cccc
Q 034564 85 RTLA 88 (91)
Q Consensus 85 ~~~~ 88 (91)
...+
T Consensus 88 ~~~d 91 (96)
T 3bw1_A 88 EDDD 91 (96)
T ss_dssp ----
T ss_pred cccc
Confidence 8754
No 15
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.92 E-value=4.7e-25 Score=137.04 Aligned_cols=79 Identities=18% Similarity=0.244 Sum_probs=65.4
Q ss_pred CCChHHHHhhcCCCeEEEEEcCCcEEEEEEEEEcCCCceeeeeeEEEe----------cCeeeeeeceEEEeCCcEEEEE
Q 034564 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV----------NGQLKNKYGDAFIRGNNVLYIS 81 (91)
Q Consensus 12 ~~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~----------~g~~~~~l~~v~IRG~~I~~i~ 81 (91)
+.+|..+|.++++++|+|+|+||++|.|+|.|||+||||+|+||.|+. .+...+.+|.++|||++|++|.
T Consensus 2 ~~~~~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~i~ 81 (91)
T 1d3b_B 2 TVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMT 81 (91)
T ss_dssp -----CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEE
T ss_pred CCChhHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEEEE
Confidence 456788999999999999999999999999999999999999999963 2345789999999999999999
Q ss_pred eCCCccccC
Q 034564 82 TSKRTLADG 90 (91)
Q Consensus 82 ~~~~~~~~~ 90 (91)
+++...+|.
T Consensus 82 ~~~~~~~~~ 90 (91)
T 1d3b_B 82 VEGPPPKDT 90 (91)
T ss_dssp EEECCC---
T ss_pred cCCCCCCCC
Confidence 998776653
No 16
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.92 E-value=1.8e-24 Score=142.10 Aligned_cols=78 Identities=21% Similarity=0.303 Sum_probs=69.7
Q ss_pred cCCChHHHHhhcCCCeEEEEEcCCcEEEEEEEEEcCCCceeeeeeEEEecCeeeeeeceEEEeCCcEEEEEeCCCccc
Q 034564 11 TTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLA 88 (91)
Q Consensus 11 ~~~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~g~~~~~l~~v~IRG~~I~~i~~~~~~~~ 88 (91)
....|+.||+++++++|+|+|++|++|+|+|.+||+|||++|+||+++..+.+..+++.+||||++|+||++||....
T Consensus 2 ~~~~P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~~~~l~~v~IRGnnI~~I~lpd~l~~ 79 (126)
T 2y9a_D 2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKN 79 (126)
T ss_dssp --CCSHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEECCSSCSS
T ss_pred CcccHHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCcEeecccEEEeCCEEEEEEccccccc
Confidence 357899999999999999999999999999999999999999999998644456899999999999999999987543
No 17
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.92 E-value=5.6e-25 Score=137.69 Aligned_cols=78 Identities=15% Similarity=0.361 Sum_probs=67.5
Q ss_pred cCCccCCChHHHHhhcCCCeEEEEE----cCCcEEEEEEEEEcCCCceeeeeeEEEe-cCeeeeeeceEEEeCCcEEEEE
Q 034564 7 KGSATTKTPADFLKSIRGRPVVVKL----NSGVDYRGILACLDGYMNIAMEQTEEYV-NGQLKNKYGDAFIRGNNVLYIS 81 (91)
Q Consensus 7 ~~~~~~~~p~~~L~~~~~k~V~V~L----~~g~~~~G~L~~~D~~mNlvL~~~~e~~-~g~~~~~l~~v~IRG~~I~~i~ 81 (91)
|....+..|+++|.++++++++|++ ++|++|.|+|.|||+||||+|+||+|+. +++..+++|.++|||++|++|+
T Consensus 9 ~~~~~m~~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~iRG~nV~~i~ 88 (92)
T 3s6n_E 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQ 88 (92)
T ss_dssp -----CCCHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSSCCEEEEEEEEECGGGEEEEE
T ss_pred ccceeccCCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCCCceeEcCeEEEeCCEEEEEE
Confidence 4334578999999999999999999 9999999999999999999999999985 4556789999999999999999
Q ss_pred eCC
Q 034564 82 TSK 84 (91)
Q Consensus 82 ~~~ 84 (91)
+.+
T Consensus 89 ~~~ 91 (92)
T 3s6n_E 89 SVS 91 (92)
T ss_dssp EC-
T ss_pred eCC
Confidence 865
No 18
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.91 E-value=2.5e-24 Score=140.05 Aligned_cols=73 Identities=21% Similarity=0.323 Sum_probs=68.8
Q ss_pred ChHHHHhhcCCCeEEEEEcCCcEEEEEEEEEcCCCceeeeeeEEEecCeeeeeeceEEEeCCcEEEEEeCCCc
Q 034564 14 TPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRT 86 (91)
Q Consensus 14 ~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~g~~~~~l~~v~IRG~~I~~i~~~~~~ 86 (91)
.|+.||+++++++|+|+|++|++|.|+|.+||+||||+|+||+|+..+....+++.+||||++|+||++||..
T Consensus 2 ~p~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~~~~~lg~v~IRG~nI~~I~~pd~l 74 (119)
T 1b34_A 2 KLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSL 74 (119)
T ss_dssp CHHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEECCTTC
T ss_pred ChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCCCceeEcceEEEcCCeEEEEEecccc
Confidence 6899999999999999999999999999999999999999999987666678999999999999999999884
No 19
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.91 E-value=4.4e-24 Score=133.68 Aligned_cols=74 Identities=26% Similarity=0.460 Sum_probs=64.4
Q ss_pred ccCCChHHHHhhcCCCeEEEEEcCCcEEEEEEEEEcCCCceeeeeeEEEec-----C--------eeeeeeceEEEeCCc
Q 034564 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN-----G--------QLKNKYGDAFIRGNN 76 (91)
Q Consensus 10 ~~~~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~-----g--------~~~~~l~~v~IRG~~ 76 (91)
+....|+.+|+.++|++|+|+|++|++|.|+|.+||+||||+|+||.|+.. | ...+++|.++|||++
T Consensus 5 ~~~~~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~n 84 (93)
T 4emg_A 5 QAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDS 84 (93)
T ss_dssp ----CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGGG
T ss_pred cccCCCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCCe
Confidence 456899999999999999999999999999999999999999999999743 3 246889999999999
Q ss_pred EEEEEeC
Q 034564 77 VLYISTS 83 (91)
Q Consensus 77 I~~i~~~ 83 (91)
|++|+++
T Consensus 85 Vv~I~p~ 91 (93)
T 4emg_A 85 VILIAPP 91 (93)
T ss_dssp EEEEECC
T ss_pred EEEEEec
Confidence 9999975
No 20
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.91 E-value=2.3e-24 Score=140.55 Aligned_cols=78 Identities=19% Similarity=0.392 Sum_probs=68.5
Q ss_pred ccCCChHHHHhhcCCCeEEEEEcCCcEEEEEEEEEcCCCceeeeeeEEEec----------Cee-----eeeeceEEEeC
Q 034564 10 ATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN----------GQL-----KNKYGDAFIRG 74 (91)
Q Consensus 10 ~~~~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~----------g~~-----~~~l~~v~IRG 74 (91)
..+..|+.+|.++++++|+|+|++|++|.|+|.+||+||||+|+||.|+.. |.. .+.+|.++|||
T Consensus 24 ~~~~~Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG 103 (121)
T 2fwk_A 24 GNIILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSG 103 (121)
T ss_dssp CCCCCHHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECG
T ss_pred ccccCcHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECC
Confidence 467899999999999999999999999999999999999999999999751 333 67899999999
Q ss_pred CcEEEEEeCCCcc
Q 034564 75 NNVLYISTSKRTL 87 (91)
Q Consensus 75 ~~I~~i~~~~~~~ 87 (91)
++|++|.+.+...
T Consensus 104 ~nVv~I~~~~~~~ 116 (121)
T 2fwk_A 104 NNVAMLVPGGDPD 116 (121)
T ss_dssp GGEEEEESSSCC-
T ss_pred CEEEEEEecCCCC
Confidence 9999999877654
No 21
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.90 E-value=1e-23 Score=136.23 Aligned_cols=76 Identities=21% Similarity=0.331 Sum_probs=57.2
Q ss_pred CChHHHHhhcCCCeEEEEEcCCcEEEEEEEEEcCCCceeeeeeEEEecC-------eeeeeeceEEEeCCcEEEEEeCCC
Q 034564 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNG-------QLKNKYGDAFIRGNNVLYISTSKR 85 (91)
Q Consensus 13 ~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~g-------~~~~~l~~v~IRG~~I~~i~~~~~ 85 (91)
..|...|.++++++|+|.|++|++|.|+|.|||+||||+|+||.|+..+ ...+.+|.++|||++|++|+++|.
T Consensus 22 ke~i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~ 101 (113)
T 4emk_C 22 KESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMDG 101 (113)
T ss_dssp ----------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTTEEEEEECC-
T ss_pred cchHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCeEEEEEecCc
Confidence 4568889999999999999999999999999999999999999997432 356899999999999999999988
Q ss_pred ccc
Q 034564 86 TLA 88 (91)
Q Consensus 86 ~~~ 88 (91)
.+|
T Consensus 102 ~ee 104 (113)
T 4emk_C 102 SEE 104 (113)
T ss_dssp ---
T ss_pred ccc
Confidence 776
No 22
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.88 E-value=1.9e-22 Score=130.87 Aligned_cols=77 Identities=16% Similarity=0.255 Sum_probs=65.1
Q ss_pred cCCChHHHHhhcC--CCeEEEEEcCCcEEEEEEEEEcCCCceeeeeeEEEecC-------e-------eeeeeceEEEeC
Q 034564 11 TTKTPADFLKSIR--GRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNG-------Q-------LKNKYGDAFIRG 74 (91)
Q Consensus 11 ~~~~p~~~L~~~~--~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~g-------~-------~~~~l~~v~IRG 74 (91)
....|+++|..++ +++|+|+|++|+.|.|+|.|||+||||+|+||.|+... . ..+++|.+||||
T Consensus 24 ~~~~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG 103 (118)
T 1b34_B 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRG 103 (118)
T ss_dssp --CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECG
T ss_pred cccChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcC
Confidence 3579999999999 59999999999999999999999999999999996311 0 145799999999
Q ss_pred CcEEEEEeCCCcc
Q 034564 75 NNVLYISTSKRTL 87 (91)
Q Consensus 75 ~~I~~i~~~~~~~ 87 (91)
++|++|.+++...
T Consensus 104 ~nVv~I~~~~~~~ 116 (118)
T 1b34_B 104 DSVIVVLRNPLIA 116 (118)
T ss_dssp GGEEEEEECCCCC
T ss_pred CEEEEEEeCchhh
Confidence 9999999987643
No 23
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.87 E-value=5.2e-22 Score=141.13 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=68.9
Q ss_pred CCChHHHHhhcCCCeEEEEEcCCcEEEEEEEEEcCCCceeeeeeEEEec----------CeeeeeeceEEEeCCcEEEEE
Q 034564 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN----------GQLKNKYGDAFIRGNNVLYIS 81 (91)
Q Consensus 12 ~~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~----------g~~~~~l~~v~IRG~~I~~i~ 81 (91)
+.++...|.+++|++|+|+|+|||+|.|+|++||+||||+|+||+|+.. +++.++++++||||+||++|.
T Consensus 2 ~v~k~~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~Is 81 (231)
T 3pgw_B 2 TVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMT 81 (231)
T ss_pred CcCchHHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEEEE
Confidence 3566789999999999999999999999999999999999999999741 346789999999999999999
Q ss_pred eCCCcccc
Q 034564 82 TSKRTLAD 89 (91)
Q Consensus 82 ~~~~~~~~ 89 (91)
+.+..-.|
T Consensus 82 ve~pPp~d 89 (231)
T 3pgw_B 82 VEGPPPKD 89 (231)
T ss_pred ecCCCCCC
Confidence 88765554
No 24
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.84 E-value=8e-21 Score=125.29 Aligned_cols=67 Identities=28% Similarity=0.513 Sum_probs=62.5
Q ss_pred HHHHhhcCCCeEEEEEcCCcEEEEEEEEEcCCCceeeeeeEEEecCeeeeeeceEEEeCCcEEEEEeCCCc
Q 034564 16 ADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRT 86 (91)
Q Consensus 16 ~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~g~~~~~l~~v~IRG~~I~~i~~~~~~ 86 (91)
.++|.+++|++|+|+|++|++|.|+|.+||+||||+|+||+++ .+ +++|.++|||++|++|.+++..
T Consensus 2 ~~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~-~~---~~lg~v~IRG~nI~~I~~~d~~ 68 (130)
T 1m5q_A 2 VAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNK-AG---EKFNRVFIMYRYIVHIDSTERR 68 (130)
T ss_dssp HHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECT-TC---CEEEEEEECGGGEEEEEECCCC
T ss_pred hhHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEE-cC---CEeceEEEeCCeEEEEEcCCcc
Confidence 4689999999999999999999999999999999999999997 33 6789999999999999999876
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=99.15 E-value=2.4e-10 Score=70.36 Aligned_cols=69 Identities=19% Similarity=0.129 Sum_probs=57.8
Q ss_pred CChHHHHhhcCCCeEEEEEcCCcEEEEEEEEEc-CCCceeeeeeEEEecCeeeeeeceEEEeCCcEEEEEeCCCccc
Q 034564 13 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLD-GYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLA 88 (91)
Q Consensus 13 ~~p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D-~~mNlvL~~~~e~~~g~~~~~l~~v~IRG~~I~~i~~~~~~~~ 88 (91)
.+|. .|.+++||+|.|.|.||++|+|.|.+|| ...|++|.|+. .+ .+...++|.|..|..|...++..+
T Consensus 7 ~~p~-el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~~---~~---~~~~~~iI~G~aI~eI~v~~~~~~ 76 (86)
T 1y96_A 7 KGPL-EWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNFL---ED---GSMSVTGIMGHAVQTVETMNEGDH 76 (86)
T ss_dssp SCHH-HHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEEC---TT---SCEEEEEECGGGEEEEEEEECCCH
T ss_pred CCHH-HHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeecc---cC---CeEEEEEEecceEEEEEEecchhH
Confidence 4566 5599999999999999999999999999 88999999992 33 245799999999999877665543
No 26
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=97.03 E-value=0.0081 Score=36.72 Aligned_cols=65 Identities=17% Similarity=0.287 Sum_probs=52.6
Q ss_pred hcCCCeEEEEEcCCcEEEEEEEEEc-CCCceeeeeeEEEe-cC--------eeeeeeceEEEeCCcEEEEEeCCC
Q 034564 21 SIRGRPVVVKLNSGVDYRGILACLD-GYMNIAMEQTEEYV-NG--------QLKNKYGDAFIRGNNVLYISTSKR 85 (91)
Q Consensus 21 ~~~~k~V~V~L~~g~~~~G~L~~~D-~~mNlvL~~~~e~~-~g--------~~~~~l~~v~IRG~~I~~i~~~~~ 85 (91)
.++|++|.+..+.+-.|+|+|..+| +..-+.|+|+..+- .| ....-++.+..||+.|.-+.+.+.
T Consensus 10 ~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~V~~~ 84 (88)
T 2vxe_A 10 PELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVVNN 84 (88)
T ss_dssp CCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEEECCC
T ss_pred cccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEEEecc
Confidence 4699999999999999999999999 56889999998752 11 122346889999999999887654
No 27
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=96.94 E-value=0.0012 Score=39.12 Aligned_cols=56 Identities=18% Similarity=0.386 Sum_probs=42.9
Q ss_pred HHHHhhcC--CCeEEEEEcCCcEEEEEEEEEcCCCceeeeeeEEEecCeeeeeeceEEEeCCcEEEEEeCC
Q 034564 16 ADFLKSIR--GRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSK 84 (91)
Q Consensus 16 ~~~L~~~~--~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~g~~~~~l~~v~IRG~~I~~i~~~~ 84 (91)
-.||+.+. ..+|+|.|.||..++|++.+||+|+=+.- + + ...+|--..|.+|.+..
T Consensus 11 d~~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~vlL~-~------~------~~~LIYKhAIsTI~p~~ 68 (74)
T 2ylb_A 11 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLK-N------T------VSQMVYKHAISTVVPSR 68 (74)
T ss_dssp HHHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEE-S------S------SEEEEEGGGEEEEEESS
T ss_pred HHHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEE-C------C------ceEEEEeeeEEEEeEcc
Confidence 56788877 67999999999999999999999975542 1 1 24566677777777554
No 28
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=96.88 E-value=0.0046 Score=37.46 Aligned_cols=63 Identities=16% Similarity=0.228 Sum_probs=51.7
Q ss_pred hhcCCCeEEEEEcCCc-EEEEEEEEEcCC-CceeeeeeEEEecCeeeeeeceEEEeCCcEEEEEeCCC
Q 034564 20 KSIRGRPVVVKLNSGV-DYRGILACLDGY-MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 85 (91)
Q Consensus 20 ~~~~~k~V~V~L~~g~-~~~G~L~~~D~~-mNlvL~~~~e~~~g~~~~~l~~v~IRG~~I~~i~~~~~ 85 (91)
.+|+|+.|.++.+++- .|.|.+..+|.. -+|.|.++. .+|- +.+...|.+++.-|.-+.+.+.
T Consensus 5 ~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f--~NG~-~~~s~eVtls~~DI~~L~ii~~ 69 (84)
T 2vc8_A 5 TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF--HNGV-KCLVPEVTFRAGDITELKILEI 69 (84)
T ss_dssp CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE--ETTE-ECSSSEEEEEGGGCSEEEEEEC
T ss_pred ccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh--hCCC-CCCCcEEEEEecChhheEEEec
Confidence 4689999999999998 999999999976 689999994 4665 3455789999998876665443
No 29
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=96.81 E-value=0.0023 Score=38.35 Aligned_cols=36 Identities=31% Similarity=0.475 Sum_probs=31.1
Q ss_pred HHHHhhcC--CCeEEEEEcCCcEEEEEEEEEcCCCcee
Q 034564 16 ADFLKSIR--GRPVVVKLNSGVDYRGILACLDGYMNIA 51 (91)
Q Consensus 16 ~~~L~~~~--~k~V~V~L~~g~~~~G~L~~~D~~mNlv 51 (91)
-.||..+. +.+|+|-|.||..+.|.+.+||+|+=+.
T Consensus 13 d~fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~VlL 50 (78)
T 3ahu_A 13 DQFLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLL 50 (78)
T ss_dssp HHHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred HHHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEE
Confidence 45677766 7899999999999999999999998665
No 30
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=96.76 E-value=0.0029 Score=37.77 Aligned_cols=37 Identities=19% Similarity=0.313 Sum_probs=31.9
Q ss_pred HHHHhhcC--CCeEEEEEcCCcEEEEEEEEEcCCCceee
Q 034564 16 ADFLKSIR--GRPVVVKLNSGVDYRGILACLDGYMNIAM 52 (91)
Q Consensus 16 ~~~L~~~~--~k~V~V~L~~g~~~~G~L~~~D~~mNlvL 52 (91)
-.||..+. ..+|.|.|.||-.+.|.+.+||+|+=+.-
T Consensus 9 d~fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~VlL~ 47 (77)
T 1kq1_A 9 DKALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLN 47 (77)
T ss_dssp HHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEEE
Confidence 45777777 68999999999999999999999986653
No 31
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=96.68 E-value=0.0065 Score=39.27 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=41.2
Q ss_pred hhcCCCeEEEEEcCCcEEEEEEEEEcCCCceee--eeeEEEecCeeeeeeceEEEeCCcEEEEEeCCC
Q 034564 20 KSIRGRPVVVKLNSGVDYRGILACLDGYMNIAM--EQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKR 85 (91)
Q Consensus 20 ~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL--~~~~e~~~g~~~~~l~~v~IRG~~I~~i~~~~~ 85 (91)
.+|+|..|.|+|+||..+.|++..+|. -+|.| ++|... ..-|+.+.|.-+.+.+.
T Consensus 8 sqFlGy~V~v~LkDgs~~qG~I~~vd~-k~LtL~~~~a~~s----------~~~I~asdI~DLkVl~~ 64 (125)
T 4a53_A 8 ADFYGSNVEVLLNNDSKARGVITNFDS-SNSILQLRLANDS----------TKSIVTKDIKDLRILPK 64 (125)
T ss_dssp HHHTTCEEEEEETTSCEEEEEEEEEET-TTTEEEEEETTTE----------EEEEEGGGEEEEEECCS
T ss_pred HHhcCceEEEEECCCCEeeEEEEeecC-CeeEEeccccccc----------cceeecccccceeeeec
Confidence 567999999999999999999999983 34555 988531 11677777766655443
No 32
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=96.67 E-value=0.0069 Score=37.51 Aligned_cols=69 Identities=13% Similarity=0.263 Sum_probs=53.6
Q ss_pred HHhhcCCCeEEEEEcCCcEEEEEEEEEc-CCCceeeeeeEEEe-cC--------eeeeeeceEEEeCCcEEEEEeCCCc
Q 034564 18 FLKSIRGRPVVVKLNSGVDYRGILACLD-GYMNIAMEQTEEYV-NG--------QLKNKYGDAFIRGNNVLYISTSKRT 86 (91)
Q Consensus 18 ~L~~~~~k~V~V~L~~g~~~~G~L~~~D-~~mNlvL~~~~e~~-~g--------~~~~~l~~v~IRG~~I~~i~~~~~~ 86 (91)
--..++|++|.+..+.+-.|+|+|..+| +-.-+.|+|+..+- .| ....-++.+..||+.|.-+.+.+..
T Consensus 13 ~~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V~e~p 91 (95)
T 2fb7_A 13 GGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVCEPP 91 (95)
T ss_dssp ---CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEEEESCCS
T ss_pred ccCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceEEEecCC
Confidence 3467899999999999999999999999 56889999987652 11 1223468999999999999887654
No 33
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=96.64 E-value=0.0032 Score=38.05 Aligned_cols=37 Identities=22% Similarity=0.521 Sum_probs=31.1
Q ss_pred HHHHhhcC--CCeEEEEEcCCcEEEEEEEEEcCCCceee
Q 034564 16 ADFLKSIR--GRPVVVKLNSGVDYRGILACLDGYMNIAM 52 (91)
Q Consensus 16 ~~~L~~~~--~k~V~V~L~~g~~~~G~L~~~D~~mNlvL 52 (91)
-.||..+. ..+|+|-|.||..++|.+.+||+|+=+.-
T Consensus 9 d~fLn~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ftVlL~ 47 (82)
T 1u1s_A 9 DPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLK 47 (82)
T ss_dssp HHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHHHcCCcEEEEEeCCcEEEEEEEEEcceEEEEe
Confidence 45677665 67899999999999999999999986653
No 34
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=96.54 E-value=0.0036 Score=37.57 Aligned_cols=55 Identities=20% Similarity=0.417 Sum_probs=39.9
Q ss_pred HHHHhhcC--CCeEEEEEcCCcEEEEEEEEEcCCCceeeeeeEEEecCeeeeeeceEEEeCCcEEEEEeC
Q 034564 16 ADFLKSIR--GRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTS 83 (91)
Q Consensus 16 ~~~L~~~~--~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~g~~~~~l~~v~IRG~~I~~i~~~ 83 (91)
-.||..+. ..+|.|.|.||..+.|.+.+||+|+=++ + +|. ..+|-=.-|.+|.+.
T Consensus 10 d~fLn~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~VlL-~------~g~------~qLIYKhAISTI~P~ 66 (79)
T 3sb2_A 10 DPFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLL-R------NTV------TQMVYKHAISTVVPA 66 (79)
T ss_dssp HHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEE-E------SSS------EEEEEGGGEEEEEES
T ss_pred HHHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEE-E------CCc------eEEEEeeeEEEEeec
Confidence 45777766 4579999999999999999999998665 2 231 235555666666654
No 35
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=96.45 E-value=0.006 Score=35.91 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=26.0
Q ss_pred CCCeEEEEEcCCcEEEEEEEEEcCCCcee
Q 034564 23 RGRPVVVKLNSGVDYRGILACLDGYMNIA 51 (91)
Q Consensus 23 ~~k~V~V~L~~g~~~~G~L~~~D~~mNlv 51 (91)
.+.+|+|-|.||..++|.+.+||+|+=+.
T Consensus 24 ~~~~Vtv~L~NG~~l~G~I~~fD~ftVll 52 (71)
T 2qtx_A 24 NGKKVKIFLRNGEVLDAEVTGVSNYEIMV 52 (71)
T ss_dssp TTCEEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred cCCcEEEEEeCCeEEEEEEEEEcceEEEE
Confidence 35789999999999999999999998665
No 36
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=96.32 E-value=0.02 Score=34.75 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=51.5
Q ss_pred hHHHHhhcCCCeEEEEEcCCcEEEEEEEEEc-CCCceeeeeeEEEecCeeeeeeceEEEeCCcEEEEEeC
Q 034564 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLD-GYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTS 83 (91)
Q Consensus 15 p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D-~~mNlvL~~~~e~~~g~~~~~l~~v~IRG~~I~~i~~~ 83 (91)
-+.+|..+.|++|.+.+.++.++.|++.++| ...|+..++-.- .-| .++.-.+|+.-|++++..
T Consensus 20 fLr~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~T-PiG----v~~eAlLR~~Dii~~sF~ 84 (85)
T 1y96_B 20 YLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQT-PIG----VQAEALLRCSDIISYTFK 84 (85)
T ss_dssp HHHHHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEECC-TTC----CEEEEEEEGGGEEEEEEC
T ss_pred HHHHHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhhcCC-Ccc----cchhhhhhcCCEEEEEec
Confidence 3567788899999999999999999999999 568887666542 122 367899999999998753
No 37
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=96.23 E-value=0.0051 Score=38.69 Aligned_cols=37 Identities=24% Similarity=0.534 Sum_probs=31.3
Q ss_pred HHHHhhcCC--CeEEEEEcCCcEEEEEEEEEcCCCceee
Q 034564 16 ADFLKSIRG--RPVVVKLNSGVDYRGILACLDGYMNIAM 52 (91)
Q Consensus 16 ~~~L~~~~~--k~V~V~L~~g~~~~G~L~~~D~~mNlvL 52 (91)
-.||..+.. .+|.|.|.||-.++|++.+||+|+=++-
T Consensus 11 d~fLn~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~VlL~ 49 (104)
T 2y90_A 11 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLK 49 (104)
T ss_dssp HHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEE
Confidence 567777775 4899999999999999999999986654
No 38
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=95.35 E-value=0.13 Score=29.74 Aligned_cols=62 Identities=19% Similarity=0.330 Sum_probs=44.1
Q ss_pred HHHHhhcCCCeEEEEEcCCcEEEEEEEEEcCCCceeeeeeEEEecCeeeeeeceEEEeCCcEEEEEe
Q 034564 16 ADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIST 82 (91)
Q Consensus 16 ~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~g~~~~~l~~v~IRG~~I~~i~~ 82 (91)
-..|.++.|++|-|-.-....|.|+|..||.- -+.|+|++.+. |. +-...+++=+.|-.|-+
T Consensus 8 dktL~~WKg~rvAv~vg~ehSFtGiledFDeE-viLL~dV~D~~-GN---k~k~liv~idDinWimL 69 (71)
T 1ycy_A 8 EKVLKEWKGHKVAVSVGGDHSFTGTLEDFDEE-VILLKDVVDVI-GN---RGKQMLIGLEDINWIML 69 (71)
T ss_dssp HHHHHHHTTSEEEEEEC----CEEEEEEECSS-EEEEEEEEETT-EE---EEEEEEEEGGGEEEEEE
T ss_pred HHHHHHhCCcEEEEEecCcceeeeehhhcCcc-eeehhhHHHHh-cc---ccceeEEEeccceEEEe
Confidence 34688999999999999999999999999975 47789999863 22 22456677777766654
No 39
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=94.39 E-value=0.27 Score=28.63 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=42.9
Q ss_pred CCCh-HHHHhhcC--CCeEEEEEcCCcEEEEEEEEEcCCCceeeeeeEEEecCeeeeeeceEEEeCCcEEEEEe
Q 034564 12 TKTP-ADFLKSIR--GRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIST 82 (91)
Q Consensus 12 ~~~p-~~~L~~~~--~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~g~~~~~l~~v~IRG~~I~~i~~ 82 (91)
+..| ...|+.++ ..+|.|.|.+|..+.|.+.-+|+|.=+.-.+. + ..++|.-..|.||.+
T Consensus 6 t~lPsvR~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~cl~L~~~~-----~------~~~LI~r~AI~~I~p 68 (70)
T 3hfo_A 6 SGLPSVRQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDGLGLVDDS-----E------RSTIVRLAAIAYITP 68 (70)
T ss_dssp CSCHHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEECTT-----C------CEEEEEGGGEEEEEE
T ss_pred CCCCcHHHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCEEEEEcCC-----C------CeEEEEeeeeEEEee
Confidence 3444 56778887 46899999999999999999999864442211 1 245677777777764
No 40
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=94.31 E-value=0.31 Score=28.54 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=41.4
Q ss_pred HHHHhhcCC--CeEEEEEcCCcEEEEEEEEEcCCCceeeeeeEEEecCeeeeeeceEEEeCCcEEEEEe
Q 034564 16 ADFLKSIRG--RPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYIST 82 (91)
Q Consensus 16 ~~~L~~~~~--k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~g~~~~~l~~v~IRG~~I~~i~~ 82 (91)
...|+.++. +.|.|.|.+|..+.|++.-+|++.=++- +... ..++|.-..|.||.+
T Consensus 13 vR~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~cl~L~-~~~~----------~~~LI~R~AI~~Ikp 70 (72)
T 3hfn_A 13 IRQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTCVCIA-DENS----------RQTTIWKQAIAYLQP 70 (72)
T ss_dssp HHHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSEEEEE-C-------------CEEEEEGGGEEEEEE
T ss_pred HHHHHHHHhhCceEEEEecCCCEEEEEEEEECCCEEEEE-cCCC----------CeEEEEeeeeEEEEe
Confidence 567888884 5799999999999999999999864432 2211 247777888888865
No 41
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=92.28 E-value=0.24 Score=35.15 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=30.3
Q ss_pred cCCCeEEEEEcCCcEEEEEEEEEcCCCceeeeee
Q 034564 22 IRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT 55 (91)
Q Consensus 22 ~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~ 55 (91)
.+|++|+|.+.+|..+.|+..++|....|+|+..
T Consensus 222 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~~ 255 (270)
T 3rux_A 222 TIGSRVRVELPGGQDVVGIARDIDDQGRLCLDVG 255 (270)
T ss_dssp STTSEEEEECTTSCEEEEEEEEECTTSCEEEEET
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEEEEEC
Confidence 3489999998889999999999999999999754
No 42
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=91.47 E-value=0.29 Score=32.51 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=24.9
Q ss_pred HhhcCCCeEEEEEc----CCcEEEEEEEEEcCC
Q 034564 19 LKSIRGRPVVVKLN----SGVDYRGILACLDGY 47 (91)
Q Consensus 19 L~~~~~k~V~V~L~----~g~~~~G~L~~~D~~ 47 (91)
+.+++|+.|.|+|. +.+.+.|+|.++|.-
T Consensus 99 f~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~ 131 (164)
T 1ib8_A 99 VAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEED 131 (164)
T ss_dssp HHHHCSEEEEEECSSCSSSCSEEEEEEEEEETT
T ss_pred HHHhCCcEEEEEEecccCCceEEEEEEEEEeCC
Confidence 47889999999994 459999999999864
No 43
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=90.82 E-value=1.9 Score=26.68 Aligned_cols=67 Identities=13% Similarity=0.282 Sum_probs=53.5
Q ss_pred hhcCCCeEEEEEcCCc-EEEEEEEEEcCCCceeeeeeEEEecCe-eeeeeceEEEeCCcEEEEEeCCCcccc
Q 034564 20 KSIRGRPVVVKLNSGV-DYRGILACLDGYMNIAMEQTEEYVNGQ-LKNKYGDAFIRGNNVLYISTSKRTLAD 89 (91)
Q Consensus 20 ~~~~~k~V~V~L~~g~-~~~G~L~~~D~~mNlvL~~~~e~~~g~-~~~~l~~v~IRG~~I~~i~~~~~~~~~ 89 (91)
.+|+|+-|.|...+.- .|.|.+..+|+ -++.|.++.. +|- -......|.++..-|..+.+.+..+.|
T Consensus 8 edwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFr--NGiplk~~~~EVtLsa~DI~~L~IIe~~~~~ 76 (103)
T 2rm4_A 8 QDWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFR--NGVPLRKQNAEVVLKCTDIRSIDLIEPAKQD 76 (103)
T ss_dssp GGGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEE--TTEECSCSSSCEEEETTTEEEEEEEECCCCC
T ss_pred cceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhh--cCcCcCCCCceEEEEecchhheeeecccccc
Confidence 4789999999999986 99999999995 4599998875 552 123568999999999888877666644
No 44
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=89.29 E-value=0.33 Score=33.62 Aligned_cols=47 Identities=19% Similarity=0.101 Sum_probs=33.6
Q ss_pred cCCCeEEEEEcCCcEEEEEEEEEcCCCceeeeeeEEEecCeeeeeeceEEEeC
Q 034564 22 IRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74 (91)
Q Consensus 22 ~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~g~~~~~l~~v~IRG 74 (91)
.+|++|++...++ +.|+..++|....|+|+... |......|.|.+|+
T Consensus 186 ~~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~~~----G~~~~~~Gev~~r~ 232 (233)
T 2eay_A 186 YLGEEVKLLGEGK--ITGKLVGLSEKGGALILTEE----GIKEILSGEFSLRR 232 (233)
T ss_dssp TTTSEEEETTEEE--EEEEEEEECTTSCEEEEETT----EEEEECSCCEEEC-
T ss_pred ccCCEEEEEECCe--EEEEEEEECCCCeEEEEECC----CeEEEEEeEEEEec
Confidence 3689999976654 99999999999999997532 22223446777765
No 45
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=87.84 E-value=1.4 Score=31.60 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=34.7
Q ss_pred cCCCeEEEEEcCCcEEEEEEEEEcCCCceeeeeeEEEecCeeeeeeceEEEeC
Q 034564 22 IRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74 (91)
Q Consensus 22 ~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~~g~~~~~l~~v~IRG 74 (91)
.+|++|+|... +..+.|+..++|....|+|+... |......|.|.+|+
T Consensus 271 ~~g~~V~v~~~-~~~~~G~~~gid~~G~L~v~~~~----g~~~~~~Gev~~r~ 318 (321)
T 1bia_A 271 FINRPVKLIIG-DKEIFGISRGIDKQGALLLEQDG----IIKPWMGGEISLRS 318 (321)
T ss_dssp TTTSEEEEEET-TEEEEEEEEEECTTSCEEEEETT----EEEEESSCEEEEC-
T ss_pred hcCCEEEEEEC-CcEEEEEEEEECCCCeEEEEECC----CEEEEEeeeEEEec
Confidence 46899999875 45899999999999999997532 22223446777664
No 46
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=83.02 E-value=2.2 Score=29.44 Aligned_cols=32 Identities=16% Similarity=0.040 Sum_probs=28.2
Q ss_pred cCCCeEEEEEcCCcEEEEEEEEEcCCCceeeee
Q 034564 22 IRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQ 54 (91)
Q Consensus 22 ~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~ 54 (91)
.+|++|+|...++..+.|+..++|....|+ +.
T Consensus 190 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 190 TIGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp STTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 368999999988877999999999999998 64
No 47
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=82.29 E-value=2.4 Score=23.72 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCcEEEEEEEEEcCC
Q 034564 23 RGRPVVVKLNSGVDYRGILACLDGY 47 (91)
Q Consensus 23 ~~k~V~V~L~~g~~~~G~L~~~D~~ 47 (91)
.|..|.+.-.||+.|-|+++.+|..
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~ 30 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSA 30 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred cCCEEEEEecCCCEEeEEEEEEecC
Confidence 4788999999999999999999876
No 48
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=78.95 E-value=1.8 Score=29.96 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCcEEEEEEEEEcCCCceeeeee
Q 034564 23 RGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT 55 (91)
Q Consensus 23 ~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~ 55 (91)
+|++|+|...++ +.|+..++|....|+++..
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~~ 218 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRLD 218 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEECT
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEEC
Confidence 699999988776 9999999999999999753
No 49
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=77.14 E-value=3.8 Score=29.56 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=27.1
Q ss_pred cCCCeEEEEEcCCcEEEEEEEEEcCCCceeeeee
Q 034564 22 IRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT 55 (91)
Q Consensus 22 ~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~ 55 (91)
.+|++|+|... +..+.|+..++|....|+|++.
T Consensus 277 ~~g~~V~v~~~-~~~~~G~~~gId~~G~Llv~~~ 309 (323)
T 3rkx_A 277 IWNRTLLFTEN-DKQFKGQAIDLDYDGYLIVRDE 309 (323)
T ss_dssp CSSSCEEEECC--CEEEEEEEEECTTSCEEEEET
T ss_pred hcCCEEEEEEC-CeEEEEEEEEECCCCEEEEEEC
Confidence 45899999764 5689999999999999998643
No 50
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=75.79 E-value=3.3 Score=25.28 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=18.7
Q ss_pred HHhhcCC-CeEEEEEcCCcEEEEEE
Q 034564 18 FLKSIRG-RPVVVKLNSGVDYRGIL 41 (91)
Q Consensus 18 ~L~~~~~-k~V~V~L~~g~~~~G~L 41 (91)
++..+-| .+|.++|.||+.+.|++
T Consensus 21 ~~~~LdGq~~v~i~l~DGs~l~GTv 45 (101)
T 2e12_A 21 WVKLLDGQERVRIELDDGSMIAGTV 45 (101)
T ss_dssp HHHTSCTTCEEEEEETTSCEEEEEE
T ss_pred HHHhhCCeeEEEEEEcCCCeEeeee
Confidence 3333334 58999999999999996
No 51
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=74.15 E-value=5.1 Score=27.36 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=24.7
Q ss_pred cCCCeEEEEEcCCcEEEEEEEEEcCCCceeeeee
Q 034564 22 IRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQT 55 (91)
Q Consensus 22 ~~~k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~ 55 (91)
.+|++|+| +| +.|+..++|....|+|+..
T Consensus 192 ~~g~~V~v---~~--~~G~~~gId~~G~L~v~~~ 220 (235)
T 3bfm_A 192 GMGEARTE---AG--RSGTFLGVDEDFGMLLRDE 220 (235)
T ss_dssp TTTSEEEE---TT--EEEEEEEECTTCCEEEECS
T ss_pred hcCCEEEE---Ee--EEEEEEEECCCCeEEEEeC
Confidence 36899999 45 9999999999999998643
No 52
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=73.80 E-value=7.8 Score=22.33 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=20.6
Q ss_pred cCCCeEEEEEcCCcEEEEEEEEEc
Q 034564 22 IRGRPVVVKLNSGVDYRGILACLD 45 (91)
Q Consensus 22 ~~~k~V~V~L~~g~~~~G~L~~~D 45 (91)
.+|+.|.++-.||+.|.|+++...
T Consensus 17 ~~geDVL~rw~DG~fYLGtIVd~~ 40 (69)
T 2xk0_A 17 ALQEDVFIKCNDGRFYLGTIIDQT 40 (69)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEC
T ss_pred ccCCeEEEEecCCCEEEEEEEecC
Confidence 468999999999999999995544
No 53
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=72.23 E-value=14 Score=22.63 Aligned_cols=56 Identities=20% Similarity=0.335 Sum_probs=41.2
Q ss_pred EEEEcCCcEEEEEEEEEcCCCceeeeeeEEEe-----cCe----------eeeeeceEEEeCCcEEEEEeCCC
Q 034564 28 VVKLNSGVDYRGILACLDGYMNIAMEQTEEYV-----NGQ----------LKNKYGDAFIRGNNVLYISTSKR 85 (91)
Q Consensus 28 ~V~L~~g~~~~G~L~~~D~~mNlvL~~~~e~~-----~g~----------~~~~l~~v~IRG~~I~~i~~~~~ 85 (91)
.++|++|..+.|.+.--|.. +.++|..... +|+ ....-+.++||.+.|+++.-+..
T Consensus 7 iiRlvSGEEIia~v~et~~~--i~i~nPv~V~~~~~e~gk~~gigF~pW~plsde~~~ii~~~~ViT~~e~~~ 77 (100)
T 3by7_A 7 IMRLVTGEDIIGNISESQGL--ITIKKAFVIIPMQATPGKPVQLVLSPWQPYTDDKEIVIDDSKVITITSPKD 77 (100)
T ss_dssp EEEETTSCEEEEEEEEETTE--EEEEEEEEEEEEC-----CCEEEEEESCTTBCCSEEEEEGGGEEEEECBCH
T ss_pred EEEecCccceeEEEEecCce--EEEECCEEEEEeecCCCcceeEeeecccccCcCceEEEchhhEEEEEeCCH
Confidence 47899999999999977664 8888988743 111 11235789999999999986643
No 54
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=69.94 E-value=8 Score=22.09 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCcEEEEEEEEEcCC
Q 034564 23 RGRPVVVKLNSGVDYRGILACLDGY 47 (91)
Q Consensus 23 ~~k~V~V~L~~g~~~~G~L~~~D~~ 47 (91)
.|..|+..-.||+.|.|++..++..
T Consensus 16 vGddVLA~wtDGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 16 EGQDVLARWSDGLFYLGTIKKINIL 40 (66)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred CCCEEEEEEccCcEEEeEEEEEccC
Confidence 5889999999999999999999874
No 55
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=66.58 E-value=3.1 Score=24.63 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=23.5
Q ss_pred cCCCeEEEEEcCCcEEEEEEEEEcCC
Q 034564 22 IRGRPVVVKLNSGVDYRGILACLDGY 47 (91)
Q Consensus 22 ~~~k~V~V~L~~g~~~~G~L~~~D~~ 47 (91)
..|+-|.++-+||+.|-|+++.+|..
T Consensus 28 ~eGeDVLarwsDGlfYLGTI~kV~~~ 53 (79)
T 2m0o_A 28 WEGQDVLARWTDGLLYLGTIKKVDSA 53 (79)
T ss_dssp CTTCEEEBCCTTSCCCEEEEEEEETT
T ss_pred ccCCEEEEEecCCCEEeEEEEEeccC
Confidence 46899999999999999999999865
No 56
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=63.58 E-value=9.6 Score=24.05 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.6
Q ss_pred cCCCeEEEEEcCCcEEEEEEEEEc
Q 034564 22 IRGRPVVVKLNSGVDYRGILACLD 45 (91)
Q Consensus 22 ~~~k~V~V~L~~g~~~~G~L~~~D 45 (91)
.+|++|..+-+||+.|.|++.+..
T Consensus 7 ~vGq~V~akh~ngryy~~~V~~~~ 30 (118)
T 2qqr_A 7 TAGQKVISKHKNGRFYQCEVVRLT 30 (118)
T ss_dssp CTTCEEEEECTTSSEEEEEEEEEE
T ss_pred ccCCEEEEECCCCCEEeEEEEEEe
Confidence 368999999999999999998875
No 57
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.71 E-value=17 Score=20.85 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCcEEEEEEEEEcCC
Q 034564 23 RGRPVVVKLNSGVDYRGILACLDGY 47 (91)
Q Consensus 23 ~~k~V~V~L~~g~~~~G~L~~~D~~ 47 (91)
.|+-|..+-.||..|.|++..+|.+
T Consensus 12 eGqdVLarWsDGlfYlGtV~kV~~~ 36 (68)
T 2e5p_A 12 EGQDVLARWTDGLLYLGTIKKVDSA 36 (68)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEETT
T ss_pred cCCEEEEEecCCcEEEeEEEEEecC
Confidence 5789999999999999999999965
No 58
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=57.86 E-value=5.2 Score=23.80 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=19.2
Q ss_pred HhhcCCCeEEEEEcCCcEEEEEE
Q 034564 19 LKSIRGRPVVVKLNSGVDYRGIL 41 (91)
Q Consensus 19 L~~~~~k~V~V~L~~g~~~~G~L 41 (91)
+....+.++.|+|+||..+.|+.
T Consensus 20 lAc~~~~~l~l~l~dGe~~~g~a 42 (86)
T 1sg5_A 20 LACQHHLMLTLELKDGEKLQAKA 42 (86)
T ss_dssp HHHTTTTCEEEECTTTCCEEESS
T ss_pred HHHHcCCeEEEEEeCCCEEEEEE
Confidence 45566899999999999999964
No 59
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.14 E-value=15 Score=20.78 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCcEEEEEEEEEcCC
Q 034564 23 RGRPVVVKLNSGVDYRGILACLDGY 47 (91)
Q Consensus 23 ~~k~V~V~L~~g~~~~G~L~~~D~~ 47 (91)
.|+-|..+-+||+.|-|++..+|..
T Consensus 10 eGqdVLarWsDGlfYlgtV~kV~~~ 34 (63)
T 2e5q_A 10 EGQYVLCRWTDGLYYLGKIKRVSSS 34 (63)
T ss_dssp TTCEEEEECTTSCEEEEEECCCCST
T ss_pred cCCEEEEEecCCCEEEEEEEEEecC
Confidence 5788999999999999999999965
No 60
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=49.35 E-value=26 Score=26.15 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=26.9
Q ss_pred CeEEEEEcCCcEEEEEEEEEcCCCceeeeee
Q 034564 25 RPVVVKLNSGVDYRGILACLDGYMNIAMEQT 55 (91)
Q Consensus 25 k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~ 55 (91)
..+.|.+.+|+.+.+.+.++|...+|-|-..
T Consensus 111 ~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv 141 (448)
T 1ky9_A 111 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQI 141 (448)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEEe
Confidence 4789999999999999999999988876544
No 61
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=48.79 E-value=28 Score=25.76 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=27.2
Q ss_pred CeEEEEEcCCcEEEEEEEEEcCCCceeeeee
Q 034564 25 RPVVVKLNSGVDYRGILACLDGYMNIAMEQT 55 (91)
Q Consensus 25 k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~ 55 (91)
.++.|.+.+|+.+.+.+.++|...+|-|-..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 5789999999999999999999888776554
No 62
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=41.30 E-value=45 Score=19.97 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=24.4
Q ss_pred HHHHhhcCCCeEEEEEcCCc----EEEEEEEEE
Q 034564 16 ADFLKSIRGRPVVVKLNSGV----DYRGILACL 44 (91)
Q Consensus 16 ~~~L~~~~~k~V~V~L~~g~----~~~G~L~~~ 44 (91)
...|.+++|++|.+....|| +-.|+|...
T Consensus 17 K~~l~~~vG~~V~l~An~GRkK~~er~GvL~et 49 (90)
T 3fb9_A 17 KEEIKAHEGQVVEMTLENGRKRQKNRLGKLIEV 49 (90)
T ss_dssp HHHHHHTTTSEEEEEECCSSSCCSCEEEEEEEE
T ss_pred HHHHHHcCCCEEEEEecCCcccEEEEEEEEEEe
Confidence 45688999999999999995 567998766
No 63
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=39.44 E-value=40 Score=24.14 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=26.1
Q ss_pred CeEEEEEcCCcEEEEEEEEEcCCCceeeeee
Q 034564 25 RPVVVKLNSGVDYRGILACLDGYMNIAMEQT 55 (91)
Q Consensus 25 k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~ 55 (91)
.++.|.+.+|+.+.+.+.++|....|-|-..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (345)
T 3stj_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (345)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 4688999999999999999999888766444
No 64
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=37.40 E-value=45 Score=22.74 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=25.5
Q ss_pred CeEEEEEcCCcEEEEEEEEEcCCCceeeeee
Q 034564 25 RPVVVKLNSGVDYRGILACLDGYMNIAMEQT 55 (91)
Q Consensus 25 k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~ 55 (91)
.++.|.+.+|+.+.+.+.+.|....|-|-..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (245)
T 3sti_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (245)
T ss_dssp -CEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCEEEEEe
Confidence 4788999999999999999998877765443
No 65
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}
Probab=36.55 E-value=28 Score=25.22 Aligned_cols=25 Identities=8% Similarity=0.080 Sum_probs=19.8
Q ss_pred hhcCCCeEEEEEcCCcEEEEEEEEE
Q 034564 20 KSIRGRPVVVKLNSGVDYRGILACL 44 (91)
Q Consensus 20 ~~~~~k~V~V~L~~g~~~~G~L~~~ 44 (91)
+.+.+++|+|..++|..|.|++-.-
T Consensus 95 ~~~~~~~v~i~t~~g~~~~Gvig~~ 119 (355)
T 3kl9_A 95 MVVSSQRFKLLTRDGHEIPVISGSV 119 (355)
T ss_dssp TTCSSCEEEEECTTSCEEEEEEC--
T ss_pred cccCCCEEEEEcCCCCEEEEEEeCc
Confidence 3467899999999999999997543
No 66
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=35.78 E-value=37 Score=25.31 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=26.5
Q ss_pred CeEEEEEcCCcEEEEEEEEEcCCCceeeeee
Q 034564 25 RPVVVKLNSGVDYRGILACLDGYMNIAMEQT 55 (91)
Q Consensus 25 k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~ 55 (91)
..+.|.+.+|+.+.+.+.++|...+|-|-..
T Consensus 102 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 132 (451)
T 3pv2_A 102 SLITVTLQDGRRLKARLIGGDSETDLAVLKI 132 (451)
T ss_dssp EEEEEECTTSCEEECEEEEEETTTTEEEEEC
T ss_pred CEEEEEEcCCCEEEEEEEecCcCCcEEEEEE
Confidence 4688999999999999999999888776544
No 67
>3uby_A DNA-3-methyladenine glycosylase; alkyladenine DNA glycosylase fold, AAG, DNA repair, DNA BIND nucleus, hydrolase-DNA complex; HET: DNA EDC; 2.00A {Homo sapiens} SCOP: b.46.1.2 PDB: 3qi5_A* 1f4r_A* 1f6o_A* 1ewn_A* 1bnk_A*
Probab=35.51 E-value=64 Score=22.22 Aligned_cols=34 Identities=21% Similarity=0.490 Sum_probs=27.9
Q ss_pred hHHHHhhcCCCeEEEEEcCCcEEEEEEEEEcCCC
Q 034564 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYM 48 (91)
Q Consensus 15 p~~~L~~~~~k~V~V~L~~g~~~~G~L~~~D~~m 48 (91)
+..+=+.++|+.+...+.+|..+.|.++....|+
T Consensus 16 ~~~vA~~LLG~~Lv~~~~~g~~~~grIVEtEAY~ 49 (219)
T 3uby_A 16 AVPLARAFLGQVLVRRLPNGTELRGRIVETEAYL 49 (219)
T ss_dssp HHHHHHHTTTCEEEEECTTSCEEEEEEEEEEEEC
T ss_pred HHHHHHHhCCCEEEEEcCCCCEEEEEEEEEeecc
Confidence 3455567999999999999999999999887765
No 68
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=33.94 E-value=2.5 Score=26.05 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=17.0
Q ss_pred EEEEEEEcCCCceeeeeeEE
Q 034564 38 RGILACLDGYMNIAMEQTEE 57 (91)
Q Consensus 38 ~G~L~~~D~~mNlvL~~~~e 57 (91)
-|.+.+||.-.|+.|++|..
T Consensus 34 ~~~~~~FDk~TNl~LEeA~~ 53 (99)
T 1x4r_A 34 KNITQCFDKMTNMKLEVAWK 53 (99)
T ss_dssp SSCEEECCTTHHHHHHHHHH
T ss_pred CCeEeechHHHHHHHHHHHH
Confidence 35689999999999998863
No 69
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=32.94 E-value=29 Score=26.32 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=28.1
Q ss_pred hHHHHhhcC---CCeEEEEEcCC---cEEEEEEEE-Ec----CCCceeeee
Q 034564 15 PADFLKSIR---GRPVVVKLNSG---VDYRGILAC-LD----GYMNIAMEQ 54 (91)
Q Consensus 15 p~~~L~~~~---~k~V~V~L~~g---~~~~G~L~~-~D----~~mNlvL~~ 54 (91)
...+|.+.- |.+|+|+..+| .+|+|+|.- ++ .+.=|.|+|
T Consensus 3 ~~~~~~~~~~~~gd~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~kl~~ 53 (438)
T 1zq1_A 3 VDEFLKERNINVGDFVRITKEEDGEEVTYEGYIMPPYELSAGDTLVLKLEN 53 (438)
T ss_dssp HHHHHHHTTCCTTCEEEEEEESSSSEEECCEEECCCCTTCCCSEEEEEETT
T ss_pred hHHHHHhcCCCCCCEEEEEECCCcceeEEEEEEecCcccCCCCeEEEEccC
Confidence 355666544 89999999998 899999983 33 444444544
No 70
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=32.70 E-value=69 Score=21.28 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=25.9
Q ss_pred CeEEEEEcCCcEEEEEEEEEcCCCceeeeee
Q 034564 25 RPVVVKLNSGVDYRGILACLDGYMNIAMEQT 55 (91)
Q Consensus 25 k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~ 55 (91)
..+.|.+.+|+.+.+.+..+|....|-|-..
T Consensus 77 ~~~~V~~~~g~~~~a~vv~~d~~~DlAll~l 107 (237)
T 3lgi_A 77 DQIIVALQDGRVFEALLVGSDSLTDLAVLKI 107 (237)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 5789999999999999999998877665433
No 71
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=32.39 E-value=70 Score=21.27 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=26.2
Q ss_pred CeEEEEEcCCcEEEEEEEEEcCCCceeeeee
Q 034564 25 RPVVVKLNSGVDYRGILACLDGYMNIAMEQT 55 (91)
Q Consensus 25 k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~ 55 (91)
..+.|.+.+|+.+.+.+..+|....|-|-..
T Consensus 87 ~~i~V~~~~g~~~~a~v~~~d~~~DlAlL~l 117 (231)
T 3tjo_A 87 HRVKVELKNGATYEAKIKDVDEKADIALIKI 117 (231)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred ceEEEEcCCCCEEEEEEEEecCCCCEEEEEe
Confidence 5789999999999999999998877766443
No 72
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=32.10 E-value=64 Score=22.51 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=26.1
Q ss_pred CeEEEEEcCCcEEEEEEEEEcCCCceeeeee
Q 034564 25 RPVVVKLNSGVDYRGILACLDGYMNIAMEQT 55 (91)
Q Consensus 25 k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~ 55 (91)
..+.|.+.+|+.+.+.+.++|...+|-|-..
T Consensus 66 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllk~ 96 (318)
T 1te0_A 66 DQIIVALQDGRVFEALLVGSDSLTDLAVLII 96 (318)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEEeCCCceEEEEEE
Confidence 3688999999999999999998888776444
No 73
>2wr8_A Putative uncharacterized protein PH0463; transferase, SAM, SAM hydroxide adenosyltransferase (DUF-62) water activation; HET: SAH; 1.77A {Pyrococcus horikoshii} PDB: 1wu8_A*
Probab=31.67 E-value=44 Score=23.57 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=16.7
Q ss_pred CcEEEEEEEEEcCCCceee
Q 034564 34 GVDYRGILACLDGYMNIAM 52 (91)
Q Consensus 34 g~~~~G~L~~~D~~mNlvL 52 (91)
+..+.|.+..+|.|.|++.
T Consensus 171 ~~~i~g~V~~iD~FGN~iT 189 (259)
T 2wr8_A 171 GDVWILKVIYIDDFGNVIL 189 (259)
T ss_dssp TTEEEEEEEEECTTCCEEE
T ss_pred CCeEEEEEEEEcccCChhh
Confidence 5678999999999999974
No 74
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=31.62 E-value=68 Score=22.52 Aligned_cols=31 Identities=32% Similarity=0.454 Sum_probs=26.0
Q ss_pred CeEEEEEcCCcEEEEEEEEEcCCCceeeeee
Q 034564 25 RPVVVKLNSGVDYRGILACLDGYMNIAMEQT 55 (91)
Q Consensus 25 k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~ 55 (91)
..+.|.+.+|+.+.+.+.++|....|-|-..
T Consensus 71 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllkl 101 (325)
T 1lcy_A 71 RRVRVRLLSGDTYEAVVTAVDPVADIATLRI 101 (325)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEEECCCCCEEEEEE
Confidence 4789999999999999999998877766444
No 75
>2zbv_A Uncharacterized conserved protein; NPPSFA, national project protein structural and functional analyses; HET: ADN; 2.05A {Thermotoga maritima} PDB: 2zbu_A*
Probab=31.35 E-value=47 Score=23.43 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=16.8
Q ss_pred CcEEEEEEEEEcCCCceee
Q 034564 34 GVDYRGILACLDGYMNIAM 52 (91)
Q Consensus 34 g~~~~G~L~~~D~~mNlvL 52 (91)
+..+.|.+..+|.|.|++.
T Consensus 167 ~~~i~g~V~~iD~FGN~iT 185 (263)
T 2zbv_A 167 NEKVIGEVAIVDTFGNVST 185 (263)
T ss_dssp TTEEEEEEEEECTTCCEEE
T ss_pred CCeEEEEEEEEcccCChhh
Confidence 5678999999999999974
No 76
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=31.23 E-value=63 Score=22.53 Aligned_cols=31 Identities=16% Similarity=0.103 Sum_probs=26.2
Q ss_pred CeEEEEEcCCcEEEEEEEEEcCCCceeeeee
Q 034564 25 RPVVVKLNSGVDYRGILACLDGYMNIAMEQT 55 (91)
Q Consensus 25 k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~ 55 (91)
..+.|.+.+|+.+.+.+.++|...+|-|-..
T Consensus 64 ~~i~V~~~~g~~~~a~vv~~d~~~DlAllkl 94 (324)
T 1y8t_A 64 PKTTVTFSDGRTAPFTVVGADPTSDIAVVRV 94 (324)
T ss_dssp CEEEEEETTCCEECEEEEECCTTTTEEEEEE
T ss_pred eEEEEEeCCCCEEEEEEEEeCCCCCEEEEEE
Confidence 4899999999999999999998877766433
No 77
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=30.54 E-value=35 Score=23.20 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=19.0
Q ss_pred hcCCCeEEEEEcCCcEEEEEEEE
Q 034564 21 SIRGRPVVVKLNSGVDYRGILAC 43 (91)
Q Consensus 21 ~~~~k~V~V~L~~g~~~~G~L~~ 43 (91)
..+|..|+|.+..|+.+.|++.+
T Consensus 168 G~~Gd~IrVr~~Sgkiv~g~V~~ 190 (219)
T 3tee_A 168 AAVAQNARVRMTSGQIVSGTVDS 190 (219)
T ss_dssp BCTTSEEEEEETTSCEEEEEECT
T ss_pred cCCCCEEEEECCCCCEEEEEEec
Confidence 45788999999899999998743
No 78
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=29.50 E-value=73 Score=20.04 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=20.5
Q ss_pred CCCeEEEEEcCCcEEEEEEEEEc
Q 034564 23 RGRPVVVKLNSGVDYRGILACLD 45 (91)
Q Consensus 23 ~~k~V~V~L~~g~~~~G~L~~~D 45 (91)
.|..|.|.-.||..|.|++.+.=
T Consensus 67 ~G~~V~V~W~DG~~y~a~f~g~~ 89 (123)
T 2xdp_A 67 EGEVVQVKWPDGKLYGAKYFGSN 89 (123)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEE
T ss_pred CCCEEEEEcCCCCEEeEEEeeee
Confidence 57899999999999999998873
No 79
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=26.74 E-value=36 Score=19.23 Aligned_cols=22 Identities=9% Similarity=0.037 Sum_probs=17.6
Q ss_pred CeEEEEEcCCcEEEEEEEEEcC
Q 034564 25 RPVVVKLNSGVDYRGILACLDG 46 (91)
Q Consensus 25 k~V~V~L~~g~~~~G~L~~~D~ 46 (91)
.+|.|+|.||..+.+++..-|.
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~t 29 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNK 29 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSB
T ss_pred EEEEEECCCCCEEEEEeCCCCC
Confidence 3788999999999999865443
No 80
>2dir_A Thump domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.308.1.3
Probab=25.87 E-value=53 Score=19.06 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=19.6
Q ss_pred CCeEEEEEcCCcEEEEEEEEEcC
Q 034564 24 GRPVVVKLNSGVDYRGILACLDG 46 (91)
Q Consensus 24 ~k~V~V~L~~g~~~~G~L~~~D~ 46 (91)
+..|.|++.++..+.|.+..|..
T Consensus 74 d~~I~VEI~~~~~~isv~~~y~~ 96 (98)
T 2dir_A 74 QYTVVVEIIKAVCCLSVVKSGPS 96 (98)
T ss_dssp SEEEEEEEETTEEEEEEEECCCT
T ss_pred CEEEEEEEeCCEEEEEEcccccc
Confidence 45799999999999999987754
No 81
>3dgp_B RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae} SCOP: d.295.1.0 PDB: 3dom_B
Probab=25.22 E-value=21 Score=20.47 Aligned_cols=13 Identities=23% Similarity=0.151 Sum_probs=10.8
Q ss_pred cEEEEEEEEEcCC
Q 034564 35 VDYRGILACLDGY 47 (91)
Q Consensus 35 ~~~~G~L~~~D~~ 47 (91)
+.++|+|+.||.-
T Consensus 2 ~A~kGvLi~CDpa 14 (71)
T 3dgp_B 2 RARKGALVQCDPS 14 (71)
T ss_dssp EEEEEEEEECCHH
T ss_pred CceeEEEEEcCHH
Confidence 5678999999964
No 82
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=24.43 E-value=1.3e+02 Score=21.00 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=26.0
Q ss_pred CeEEEEEcCCcEEEEEEEEEcCCCceeeeee
Q 034564 25 RPVVVKLNSGVDYRGILACLDGYMNIAMEQT 55 (91)
Q Consensus 25 k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~ 55 (91)
..+.|.+.+|+.+.+.+..+|....|-|-..
T Consensus 70 ~~i~V~~~~g~~~~a~~~~~d~~~DlAlL~l 100 (332)
T 3num_A 70 HRVKVELKNGATYEAKIKDVDEKADIALIKI 100 (332)
T ss_dssp SEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCeEEEEE
Confidence 5789999999999999999998877765433
No 83
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=24.14 E-value=92 Score=22.04 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=25.9
Q ss_pred CeEEEEEcCCcEEEEEEEEEcCCCceeeeee
Q 034564 25 RPVVVKLNSGVDYRGILACLDGYMNIAMEQT 55 (91)
Q Consensus 25 k~V~V~L~~g~~~~G~L~~~D~~mNlvL~~~ 55 (91)
..+.|.+.+|+.+.+.+.++|....|-|-..
T Consensus 77 ~~i~V~~~~g~~~~a~~v~~d~~~DlAlLkl 107 (348)
T 3qo6_A 77 SDLRVTLADQTTFDAKVVGFDQDKDVAVLRI 107 (348)
T ss_dssp SEEEEECTTSCEEEEEEEEEEGGGTEEEEEC
T ss_pred cEEEEEECCCCEEEEEEEEEcCcCCEEEEEE
Confidence 5789999999999999999998877665433
No 84
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=23.06 E-value=84 Score=24.31 Aligned_cols=30 Identities=20% Similarity=0.109 Sum_probs=25.0
Q ss_pred CeEEEEEc-CCcEEEEEEEEEcCCCceeeee
Q 034564 25 RPVVVKLN-SGVDYRGILACLDGYMNIAMEQ 54 (91)
Q Consensus 25 k~V~V~L~-~g~~~~G~L~~~D~~mNlvL~~ 54 (91)
..|.|.+. ||++|.++++++|....|-|-.
T Consensus 97 ~~i~V~~~~dg~~~~A~vv~~D~~~DLAvLk 127 (539)
T 4fln_A 97 TQVKVKRRGDDRKYVAKVLVRGVDCDIALLS 127 (539)
T ss_dssp EEEEEECTTCCCCEEEEEEEEETTTTEEEEE
T ss_pred CeEEEEEccCCEEEEEEEEEECCCCCEEEEE
Confidence 46888885 8999999999999988876643
No 85
>3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined}
Probab=22.37 E-value=1.4e+02 Score=19.47 Aligned_cols=35 Identities=6% Similarity=-0.128 Sum_probs=23.7
Q ss_pred ceeeeeeEEEec-CeeeeeeceEEEeCCcEEEEEeC
Q 034564 49 NIAMEQTEEYVN-GQLKNKYGDAFIRGNNVLYISTS 83 (91)
Q Consensus 49 NlvL~~~~e~~~-g~~~~~l~~v~IRG~~I~~i~~~ 83 (91)
.++|+|+..+.. +.....-..|.|++..|..|...
T Consensus 5 ~lli~ng~i~d~~~~~~~~~~dV~I~~G~I~~Ig~~ 40 (426)
T 3mkv_A 5 TFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDK 40 (426)
T ss_dssp EEEEEEEEECCTTSSSCEEEEEEEEETTEEEEEESS
T ss_pred cEEEECeEEEeCCCCcEecCcEEEEECCEEEEecCC
Confidence 578889887522 22222335799999999999754
No 86
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=22.12 E-value=73 Score=19.07 Aligned_cols=21 Identities=10% Similarity=0.226 Sum_probs=17.5
Q ss_pred CeEEEEEcCCcEEEEEEEEEc
Q 034564 25 RPVVVKLNSGVDYRGILACLD 45 (91)
Q Consensus 25 k~V~V~L~~g~~~~G~L~~~D 45 (91)
.+|.|+|-||..+.+++-.-|
T Consensus 14 t~IqIRlpdG~rl~~rF~~~~ 34 (109)
T 2dzk_A 14 ARIQFRLPDGSSFTNQFPSDA 34 (109)
T ss_dssp EEEEEECSSSCEEEEEECTTS
T ss_pred EEEEEECCCCCEEEEEeCCCC
Confidence 589999999999999985543
No 87
>3hpa_A Amidohydrolase; signature of Zn ligands, structural genomics, NYSGXRC, target 9236E, PSI-2, protein structure initiative; 2.20A {Unidentified}
Probab=20.83 E-value=1.9e+02 Score=19.98 Aligned_cols=36 Identities=11% Similarity=0.273 Sum_probs=23.0
Q ss_pred CceeeeeeEEEe--cCee-eeeeceEEEeCCcEEEEEeC
Q 034564 48 MNIAMEQTEEYV--NGQL-KNKYGDAFIRGNNVLYISTS 83 (91)
Q Consensus 48 mNlvL~~~~e~~--~g~~-~~~l~~v~IRG~~I~~i~~~ 83 (91)
.-|+++|+.... ++.. ...=+-|.|++..|+.|...
T Consensus 29 ~~llI~na~vi~T~D~~~~vi~~gdV~I~dgrI~aVG~~ 67 (479)
T 3hpa_A 29 KTLLVKHADVLVTMDDTRRELRDAGLYIEDNRIVAVGPS 67 (479)
T ss_dssp CEEEEEEEEEEECCCTTCCEEEEEEEEEETTEEEEEEEG
T ss_pred CCEEEECCEEEEeeCCCCCEEcCcEEEEECCEEEEEeCC
Confidence 457788886542 3321 12225799999999999754
No 88
>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima}
Probab=20.54 E-value=98 Score=22.12 Aligned_cols=22 Identities=18% Similarity=0.090 Sum_probs=17.5
Q ss_pred hcCCCeEEEE-EcCCcEEEEEEE
Q 034564 21 SIRGRPVVVK-LNSGVDYRGILA 42 (91)
Q Consensus 21 ~~~~k~V~V~-L~~g~~~~G~L~ 42 (91)
...|..|+|. +..|+.+.|++.
T Consensus 237 Ga~Gd~IRVrNl~SgkiV~G~V~ 259 (278)
T 3frn_A 237 GYLGETVRAMNVESRKYVFGRVE 259 (278)
T ss_dssp BCTTCEEEEEC--CCCEEEEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEEe
Confidence 4678999999 999999999975
No 89
>3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian}
Probab=20.47 E-value=1.2e+02 Score=16.53 Aligned_cols=36 Identities=3% Similarity=-0.052 Sum_probs=22.3
Q ss_pred CceeeeeeEEEecCeeeeeeceEEEeCCcEEEEEeC
Q 034564 48 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTS 83 (91)
Q Consensus 48 mNlvL~~~~e~~~g~~~~~l~~v~IRG~~I~~i~~~ 83 (91)
+.+++.|+..+.........+.+.|++..|..|...
T Consensus 4 ~~~li~n~~i~~~~~~~~~~~~i~I~~g~I~~ig~~ 39 (81)
T 3ggm_A 4 PDMILYNGKITTLDPSQPEVSAIAITDGLITAVGGD 39 (81)
T ss_dssp CSEEEESSEEECSCTTCSEESEEEEETTEEEEEESG
T ss_pred CCEEEECCEEEeCCCCCccccEEEEECCEEEEEeCc
Confidence 346677776653211112347788999999888754
No 90
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.38 E-value=1.3e+02 Score=16.97 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCcEEEEEEEEEcCC
Q 034564 23 RGRPVVVKLNSGVDYRGILACLDGY 47 (91)
Q Consensus 23 ~~k~V~V~L~~g~~~~G~L~~~D~~ 47 (91)
.|..+.-.-.||..|.+++.+++..
T Consensus 12 vGd~clA~wsDg~~Y~A~I~~v~~~ 36 (74)
T 2equ_A 12 AGEEVLARWTDCRYYPAKIEAINKE 36 (74)
T ss_dssp TTCEEEEECSSSSEEEEEEEEESTT
T ss_pred CCCEEEEECCCCCEEEEEEEEECCC
Confidence 4778888888999999999999864
No 91
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=20.12 E-value=1.3e+02 Score=16.83 Aligned_cols=25 Identities=8% Similarity=0.019 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCcEEEEEEEEEcCC
Q 034564 23 RGRPVVVKLNSGVDYRGILACLDGY 47 (91)
Q Consensus 23 ~~k~V~V~L~~g~~~~G~L~~~D~~ 47 (91)
+|.+|...-.|++.|.+++.+++..
T Consensus 9 vGd~vmArW~D~~yYpA~I~si~~~ 33 (67)
T 3p8d_A 9 INEQVLACWSDCRFYPAKVTAVNKD 33 (67)
T ss_dssp TTCEEEEECTTSCEEEEEEEEECTT
T ss_pred cCCEEEEEcCCCCEeeEEEEEECCC
Confidence 4777888778999999999999875
Done!