BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034565
         (91 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2OSW|A Chain A, Endo-Glycoceramidase Ii From Rhodococcus Sp.
 pdb|2OSW|B Chain B, Endo-Glycoceramidase Ii From Rhodococcus Sp.
 pdb|2OYK|A Chain A, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
           Cellobiose-Like Isofagomine Complex
 pdb|2OYK|B Chain B, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
           Cellobiose-Like Isofagomine Complex
 pdb|2OYL|A Chain A, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
           Cellobiose-Like Imidazole Complex
 pdb|2OYL|B Chain B, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
           Cellobiose-Like Imidazole Complex
 pdb|2OYM|A Chain A, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
           Five-Membered Iminocyclitol Complex
 pdb|2OYM|B Chain B, Endo-Glycoceramidase Ii From Rhodococcus Sp.:
           Five-Membered Iminocyclitol Complex
          Length = 481

 Score = 26.9 bits (58), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 23/53 (43%)

Query: 3   IDVDRTIQAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRV 55
           ID  R  Q      P++  +PL + DG   +   L D T  A+  N   T RV
Sbjct: 280 IDDPRAGQQRIAYCPHLYPLPLDIGDGHEGLARTLTDVTIDAWRANTAHTARV 332


>pdb|2OSX|A Chain A, Endo-glycoceramidase Ii From Rhodococcus Sp.: Ganglioside
           Gm3 Complex
          Length = 481

 Score = 26.9 bits (58), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 23/53 (43%)

Query: 3   IDVDRTIQAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRV 55
           ID  R  Q      P++  +PL + DG   +   L D T  A+  N   T RV
Sbjct: 280 IDDPRAGQQRIAYCPHLYPLPLDIGDGHEGLARTLTDVTIDAWRANTAHTARV 332


>pdb|2OSY|A Chain A, Endo-Glycoceramidase Ii From Rhodococcus Sp.: Lactosyl-
           Enzyme Intermediate
 pdb|2OSY|B Chain B, Endo-Glycoceramidase Ii From Rhodococcus Sp.: Lactosyl-
           Enzyme Intermediate
          Length = 481

 Score = 26.9 bits (58), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 23/53 (43%)

Query: 3   IDVDRTIQAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAYGTNYVETLRV 55
           ID  R  Q      P++  +PL + DG   +   L D T  A+  N   T RV
Sbjct: 280 IDDPRAGQQRIAYCPHLYPLPLDIGDGHEGLARTLTDVTIDAWRANTAHTARV 332


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.139    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,598,732
Number of Sequences: 62578
Number of extensions: 86004
Number of successful extensions: 149
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 3
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)