Query 034565
Match_columns 91
No_of_seqs 85 out of 87
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 06:20:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034565.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034565hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cov_D Beta-1,3-xylanase; carb 57.3 3.2 0.00011 28.3 0.8 49 7-57 15-75 (104)
2 2jrw_A Cyclic extended PEP.1; 26.9 20 0.00068 18.8 0.7 10 66-75 10-19 (26)
3 2rod_B NOXA, noxaa; MCL-1, apo 23.9 18 0.00062 19.1 0.2 9 76-84 1-9 (27)
4 2uyz_B Small ubiquitin-related 18.5 32 0.0011 19.7 0.5 21 64-84 44-64 (79)
5 2atz_A H. pylori predicted cod 17.0 41 0.0014 24.8 0.8 17 71-87 147-164 (180)
6 1wm3_A Ubiquitin-like protein 16.5 62 0.0021 18.8 1.5 20 65-84 43-62 (72)
7 3n3f_A Collagen alpha-1(XV) ch 16.3 22 0.00075 21.3 -0.6 15 21-35 32-46 (54)
8 2kzf_A RBFA, ribosome-binding 15.3 1.9E+02 0.0064 18.4 3.7 37 32-69 14-55 (106)
9 2iuk_A SEED lipoxygenase; iron 15.0 70 0.0024 28.3 1.9 24 62-85 164-187 (864)
10 1ybx_A Conserved hypothetical 13.2 1.8E+02 0.0063 20.1 3.4 25 53-77 78-102 (143)
No 1
>2cov_D Beta-1,3-xylanase; carbohydrate-binding module, family 31 CBM, beta-1,3-xylanas binding protein; 1.25A {Alcaligenes SP}
Probab=57.28 E-value=3.2 Score=28.32 Aligned_cols=49 Identities=22% Similarity=0.373 Sum_probs=31.4
Q ss_pred cceeeeeeeeceeEeeccccCccchhhhhcHH---------HHHHH---HhCcceeEEEEEEE
Q 034565 7 RTIQAVTRVKPYICTMPLRLDDGWNQIQLNLA---------DFTRR---AYGTNYVETLRVQV 57 (91)
Q Consensus 7 ~~fq~~trVkp~~c~mPL~L~~GWN~i~~nL~---------d~t~~---aygT~yvet~rv~I 57 (91)
=||.+.+-+.-|.... .-+.|||+|++|=- .|+|. ..|..|-=|-+|+=
T Consensus 15 ~~Yvsds~ievfH~d~--gWsAgwnY~CLd~yCl~g~ks~g~f~r~F~a~LGqtY~i~FKVeD 75 (104)
T 2cov_D 15 FNYVSDQEIEVYHVDK--GWSAGWNYVCLNDYCLPGNKSNGAFRKTFNAVLGQDYKLTFKVED 75 (104)
T ss_dssp EEEEETTEEEEEEECC--CCCCSSEEEEETTEEEECEEETTEEEEEEECCTTCEEEEEEEEEE
T ss_pred ceeecCCeEEEEEecC--CccceeeEEEecCeeccccccCCeeeeeechhcCcceeEEEEEec
Confidence 3567777777776554 78999999998721 11111 13667776666665
No 2
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=26.87 E-value=20 Score=18.83 Aligned_cols=10 Identities=50% Similarity=0.879 Sum_probs=8.3
Q ss_pred eeeccccCCC
Q 034565 66 IYFSDRLYSE 75 (91)
Q Consensus 66 IYFsDrlYs~ 75 (91)
-|||+|.|..
T Consensus 10 nyfserpyhp 19 (26)
T 2jrw_A 10 NYFSERPYHP 19 (26)
T ss_dssp SSCCSSSCCS
T ss_pred hhcccCCCCC
Confidence 4899999975
No 3
>2rod_B NOXA, noxaa; MCL-1, apoptosis, BH3-only, BCL-2, cytoplasm, developmental protein, differentiation, membrane, mitochondrion, nucleus, phosphoprotein; NMR {Mus musculus}
Probab=23.95 E-value=18 Score=19.13 Aligned_cols=9 Identities=67% Similarity=1.176 Sum_probs=6.9
Q ss_pred cCCccccee
Q 034565 76 EELPPEFKL 84 (91)
Q Consensus 76 ~ELP~e~kl 84 (91)
.|||+||.-
T Consensus 1 aelppefaa 9 (27)
T 2rod_B 1 AELPPEFAA 9 (27)
T ss_dssp CCCCTHHHH
T ss_pred CCCChHHHH
Confidence 489999853
No 4
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=18.46 E-value=32 Score=19.73 Aligned_cols=21 Identities=19% Similarity=0.437 Sum_probs=17.0
Q ss_pred EEeeeccccCCCcCCccccee
Q 034565 64 RRIYFSDRLYSEEELPPEFKL 84 (91)
Q Consensus 64 RRIYFsDrlYs~~ELP~e~kl 84 (91)
-|++|..+...++..+.+|.+
T Consensus 44 qrL~~~G~~L~d~~tl~~~~i 64 (79)
T 2uyz_B 44 LRFLFEGQRIADNHTPKELGM 64 (79)
T ss_dssp EEEEETTEECCTTCCHHHHTC
T ss_pred EEEEECCEEeCCCCCHHHcCC
Confidence 357888888899999888865
No 5
>2atz_A H. pylori predicted coding region HP0184; structural genomics, PSI, protein struc initiative, midwest center for structural genomics, MCSG; HET: DGT; 2.00A {Helicobacter pylori} SCOP: d.264.1.3
Probab=17.04 E-value=41 Score=24.83 Aligned_cols=17 Identities=35% Similarity=0.917 Sum_probs=12.7
Q ss_pred ccCCCcCCcccceee-cc
Q 034565 71 RLYSEEELPPEFKLY-LP 87 (91)
Q Consensus 71 rlYs~~ELP~e~kl~-~p 87 (91)
|.+...+||++|.+. +|
T Consensus 147 r~fPs~dlP~~fNIltLP 164 (180)
T 2atz_A 147 KVFPSNEWPKEFNILALP 164 (180)
T ss_dssp EEESCTTSCGGGCEEECC
T ss_pred eeCCCccCChhcceeecc
Confidence 456778999999875 44
No 6
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=16.53 E-value=62 Score=18.83 Aligned_cols=20 Identities=20% Similarity=0.524 Sum_probs=16.6
Q ss_pred EeeeccccCCCcCCccccee
Q 034565 65 RIYFSDRLYSEEELPPEFKL 84 (91)
Q Consensus 65 RIYFsDrlYs~~ELP~e~kl 84 (91)
|..|..+..++++.|.++.+
T Consensus 43 rf~fdG~~l~~~~Tp~~l~m 62 (72)
T 1wm3_A 43 RFRFDGQPINETDTPAQLEM 62 (72)
T ss_dssp EEEETTEECCTTCCTTTTTC
T ss_pred EEEECCEEcCCCCCHHHcCC
Confidence 67778888889999999875
No 7
>3n3f_A Collagen alpha-1(XV) chain; extracellular matrix, basement membrane, collagen trimerization domain, folding, association, chain selection helix; 2.00A {Homo sapiens}
Probab=16.32 E-value=22 Score=21.26 Aligned_cols=15 Identities=40% Similarity=0.977 Sum_probs=11.3
Q ss_pred eeccccCccchhhhh
Q 034565 21 TMPLRLDDGWNQIQL 35 (91)
Q Consensus 21 ~mPL~L~~GWN~i~~ 35 (91)
.+=+|...||.+|++
T Consensus 32 eLyiRVr~Gwr~v~L 46 (54)
T 3n3f_A 32 EFFIRVRDGWKKLQL 46 (54)
T ss_dssp EEEEEETTEEEECCC
T ss_pred eEEEEEcCceeeeec
Confidence 345677889999875
No 8
>2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural genomics, PSI-biology, protein structure initiative; NMR {Thermotoga maritima}
Probab=15.29 E-value=1.9e+02 Score=18.39 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=28.4
Q ss_pred hhhhcHHHHHHHHhCc-----ceeEEEEEEEecceeeEEeeec
Q 034565 32 QIQLNLADFTRRAYGT-----NYVETLRVQVHANCRLRRIYFS 69 (91)
Q Consensus 32 ~i~~nL~d~t~~aygT-----~yvet~rv~I~ANCRlRRIYFs 69 (91)
+|+=.|+++ +.-..- +.+..++|.+-+.-+.-+||+|
T Consensus 14 ~i~~~ls~i-~~eikDprl~~~~vtVt~V~vs~Dl~~AkVyvs 55 (106)
T 2kzf_A 14 EIQKLLMEA-LQQLRDPRLKKDFVTFSRVELSKDKRYADVYVS 55 (106)
T ss_dssp HHHHHHHHH-HHTTCCSSCCGGGCCEEEEEECTTSCEEEEEEC
T ss_pred HHHHHHHHH-HHhccCccccCCceEEEEEEECCCCCEEEEEEE
Confidence 466667777 443221 4789999999999999999997
No 9
>2iuk_A SEED lipoxygenase; iron, dioxygenase, metal-binding, oxidoreductase, oxylipin biosynthesis, soybean lipoxygenase-D, fatty acid biosynthesis; 2.4A {Glycine max}
Probab=14.98 E-value=70 Score=28.34 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=20.5
Q ss_pred eeEEeeeccccCCCcCCcccceee
Q 034565 62 RLRRIYFSDRLYSEEELPPEFKLY 85 (91)
Q Consensus 62 RlRRIYFsDrlYs~~ELP~e~kl~ 85 (91)
.-.||||+.+.|=..|.|+-+|-+
T Consensus 164 ~~~RifF~n~~ylp~~tp~~l~~~ 187 (864)
T 2iuk_A 164 KKNRIFFVNDTYLPSATPAPLLKY 187 (864)
T ss_dssp SSCEEEEBSCCCCTTTSCGGGHHH
T ss_pred CCCceeccCCCcCcccCcHHHHHH
Confidence 357999999999999999987643
No 10
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=13.16 E-value=1.8e+02 Score=20.13 Aligned_cols=25 Identities=8% Similarity=0.214 Sum_probs=22.5
Q ss_pred EEEEEecceeeEEeeeccccCCCcC
Q 034565 53 LRVQVHANCRLRRIYFSDRLYSEEE 77 (91)
Q Consensus 53 ~rv~I~ANCRlRRIYFsDrlYs~~E 77 (91)
++|.+.++-.|.+|-+.+.+..+++
T Consensus 78 VkVtvnG~~ev~~I~Idp~lldpeD 102 (143)
T 1ybx_A 78 VTVVATGRKDIKEITIKPEVVDPDD 102 (143)
T ss_dssp EEEEEETTCCEEEEEECGGGCCTTC
T ss_pred EEEEEecCceEEEEEECHHHcCCcC
Confidence 7999999999999999999997543
Done!