Query 034565
Match_columns 91
No_of_seqs 85 out of 87
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 06:20:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034565.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034565hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1josa_ d.52.7.1 (A:) Ribosome 30.0 47 0.0034 19.3 4.7 38 33-70 9-49 (100)
2 d1t6la1 d.131.1.2 (A:10-135) U 24.3 26 0.0019 22.8 2.7 23 52-78 49-71 (126)
3 d1euvb_ d.15.1.1 (B:) SUMO-1 ( 18.2 25 0.0018 19.6 1.5 21 64-84 44-64 (79)
4 d2vy4a1 g.37.1.7 (A:53-87) U11 17.3 4.5 0.00032 21.5 -1.9 9 59-67 24-32 (35)
5 d1v0aa1 b.18.1.30 (A:4-170) En 15.6 5.1 0.00037 25.4 -2.4 24 23-46 103-126 (167)
6 d1oh4a_ b.18.1.18 (A:) Beta-ma 15.2 7.9 0.00058 26.6 -1.6 22 24-45 96-122 (174)
7 d1xjva1 b.40.4.3 (A:6-145) Pro 14.7 82 0.0059 19.7 3.6 33 46-81 35-67 (140)
8 d1pkha_ b.85.4.1 (A:) Bifuncti 13.8 41 0.003 21.0 1.8 16 54-69 152-167 (182)
9 d1j8ba_ d.222.1.1 (A:) Hypothe 13.3 73 0.0053 18.4 2.8 22 53-74 36-57 (92)
10 d1bhia_ g.37.1.1 (A:) Transact 13.3 22 0.0016 18.9 0.2 9 15-23 4-12 (38)
No 1
>d1josa_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Haemophilus influenzae [TaxId: 727]}
Probab=29.98 E-value=47 Score=19.30 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=28.4
Q ss_pred hhhcHHHHHHHHhC---cceeEEEEEEEecceeeEEeeecc
Q 034565 33 IQLNLADFTRRAYG---TNYVETLRVQVHANCRLRRIYFSD 70 (91)
Q Consensus 33 i~~nL~d~t~~ayg---T~yvet~rv~I~ANCRlRRIYFsD 70 (91)
|+=-|+++..+-.. -..+..++|.+-+..+.-+||+|-
T Consensus 9 i~~~is~il~~~i~d~~l~~vtIt~V~~S~Dl~~A~Vy~s~ 49 (100)
T d1josa_ 9 IQKEIAVILQREVKDPRIGMVTVSDVEVSSDLSYAKIFVTF 49 (100)
T ss_dssp HHHHHHHHHHHHCCCTTTCCEEEEEEEECTTSCEEEEEEEE
T ss_pred HHHHHHHHHHHhccCcccCceEEEEEEEcCCcceEEEEEEe
Confidence 44455555554322 257999999999999999999985
No 2
>d1t6la1 d.131.1.2 (A:10-135) UL44 {Human cytomegalovirus, HHV-5 [TaxId: 10359]}
Probab=24.33 E-value=26 Score=22.84 Aligned_cols=23 Identities=13% Similarity=0.661 Sum_probs=19.0
Q ss_pred EEEEEEecceeeEEeeeccccCCCcCC
Q 034565 52 TLRVQVHANCRLRRIYFSDRLYSEEEL 78 (91)
Q Consensus 52 t~rv~I~ANCRlRRIYFsDrlYs~~EL 78 (91)
..++.+++.| +|.+|+-|+...+
T Consensus 49 V~KitfnssC----LyitD~~F~~KTI 71 (126)
T d1t6la1 49 VSKITFNSSC----LYITDKSFQPKTI 71 (126)
T ss_dssp EEEEEECGGG----EEESCTTCCCEEE
T ss_pred eeeEEecceE----EEEecCccccccc
Confidence 3688999999 9999999886544
No 3
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}
Probab=18.24 E-value=25 Score=19.55 Aligned_cols=21 Identities=10% Similarity=0.355 Sum_probs=17.9
Q ss_pred EEeeeccccCCCcCCccccee
Q 034565 64 RRIYFSDRLYSEEELPPEFKL 84 (91)
Q Consensus 64 RRIYFsDrlYs~~ELP~e~kl 84 (91)
-|+.|..+...+++.|.++.|
T Consensus 44 ~~l~f~G~~l~~~~T~~~~~i 64 (79)
T d1euvb_ 44 LRFLYDGIRIQADQTPEDLDM 64 (79)
T ss_dssp EEEEETTEECCTTCCTTTTTC
T ss_pred EEEEECCEEeCCCCCHHHCCC
Confidence 357789999999999999876
No 4
>d2vy4a1 g.37.1.7 (A:53-87) U11/U12 small nuclear ribonucleoprotein 48 kDa protein, U11-48K {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.30 E-value=4.5 Score=21.49 Aligned_cols=9 Identities=56% Similarity=1.088 Sum_probs=6.4
Q ss_pred cceeeEEee
Q 034565 59 ANCRLRRIY 67 (91)
Q Consensus 59 ANCRlRRIY 67 (91)
|.||||++=
T Consensus 24 asCrLRklg 32 (35)
T d2vy4a1 24 ASCRLRKMG 32 (35)
T ss_dssp HHHHHHHCS
T ss_pred HHhhHhhcc
Confidence 678888763
No 5
>d1v0aa1 b.18.1.30 (A:4-170) Endoglucanase H {Clostridium thermocellum [TaxId: 1515]}
Probab=15.57 E-value=5.1 Score=25.38 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=19.9
Q ss_pred ccccCccchhhhhcHHHHHHHHhC
Q 034565 23 PLRLDDGWNQIQLNLADFTRRAYG 46 (91)
Q Consensus 23 PL~L~~GWN~i~~nL~d~t~~ayg 46 (91)
.....++|.+|.|..++|.+..++
T Consensus 103 ~f~~~~~W~~V~IPF~~F~~~~~~ 126 (167)
T d1v0aa1 103 SITPDSSWKTIEIPFSSFRRRLDY 126 (167)
T ss_dssp EECCCSSCEEEEEEGGGCEECCSC
T ss_pred EEecCCccEEEEEEHHHccccccc
Confidence 446689999999999999987654
No 6
>d1oh4a_ b.18.1.18 (A:) Beta-mannosidase, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=15.17 E-value=7.9 Score=26.57 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=15.4
Q ss_pred cccCccchhh-----hhcHHHHHHHHh
Q 034565 24 LRLDDGWNQI-----QLNLADFTRRAY 45 (91)
Q Consensus 24 L~L~~GWN~i-----~~nL~d~t~~ay 45 (91)
+.+.+||.|| .+||.|+..--.
T Consensus 96 ~al~p~W~qi~~d~~~in~~dLe~v~~ 122 (174)
T d1oh4a_ 96 AVLNPGWVKIGLDMNNANVESAEIITF 122 (174)
T ss_dssp EEEETTTEEESTTSSCEETTSCEEEEE
T ss_pred EEcCCChhhccCcccccchhhhhheee
Confidence 4467889997 678888755433
No 7
>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.71 E-value=82 Score=19.70 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=18.8
Q ss_pred CcceeEEEEEEEecceeeEEeeeccccCCCcCCccc
Q 034565 46 GTNYVETLRVQVHANCRLRRIYFSDRLYSEEELPPE 81 (91)
Q Consensus 46 gT~yvet~rv~I~ANCRlRRIYFsDrlYs~~ELP~e 81 (91)
|+.|..|++|.=..+--|.-.+|++ ..|+||.-
T Consensus 35 g~D~~~tl~I~D~S~~gl~v~iF~~---~~~~LP~v 67 (140)
T d1xjva1 35 GTDYCSVVTIVDQTNVKLTCLLFSG---NYEALPII 67 (140)
T ss_dssp SSSEEEEEEEECTTCCEEEEEEEES---SGGGSCCC
T ss_pred CCeEEEEEEEEeCCCCCeEEEEECC---ChHHCCCC
Confidence 5566666655444444455566665 34677753
No 8
>d1pkha_ b.85.4.1 (A:) Bifunctional dCTP deaminase/dUTPase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=13.83 E-value=41 Score=20.97 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=14.1
Q ss_pred EEEEecceeeEEeeec
Q 034565 54 RVQVHANCRLRRIYFS 69 (91)
Q Consensus 54 rv~I~ANCRlRRIYFs 69 (91)
-|+|++|.||-.+.|.
T Consensus 152 pi~I~~g~ri~Ql~F~ 167 (182)
T d1pkha_ 152 PVILYKNQRIGQLIFS 167 (182)
T ss_dssp CEEEETTCEEEEEEEE
T ss_pred CEEEcCCCEEEEEEEE
Confidence 3899999999999994
No 9
>d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus influenzae [TaxId: 727]}
Probab=13.28 E-value=73 Score=18.42 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=20.4
Q ss_pred EEEEEecceeeEEeeeccccCC
Q 034565 53 LRVQVHANCRLRRIYFSDRLYS 74 (91)
Q Consensus 53 ~rv~I~ANCRlRRIYFsDrlYs 74 (91)
++|.+..+-.|.+|-+.+.+..
T Consensus 36 V~V~~~G~~~v~~i~Id~~~l~ 57 (92)
T d1j8ba_ 36 VKITINGAHNCRRIDIDPSLME 57 (92)
T ss_dssp EEEEEETTCCEEEEEECGGGGG
T ss_pred EEEEEECCeEEEEEEECHHHhc
Confidence 7899999999999999998885
No 10
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.26 E-value=22 Score=18.91 Aligned_cols=9 Identities=56% Similarity=1.357 Sum_probs=7.3
Q ss_pred eeceeEeec
Q 034565 15 VKPYICTMP 23 (91)
Q Consensus 15 Vkp~~c~mP 23 (91)
-|||.|+.|
T Consensus 4 dkPF~C~~p 12 (38)
T d1bhia_ 4 DKPFLCTAP 12 (38)
T ss_dssp CCCEECCCT
T ss_pred CCceecCCC
Confidence 478999887
Done!