BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034568
(91 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 36/52 (69%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
+DYY+IL V A E EIR Y RLA+K+HPD+ + A ++F+EI EAY+
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYE 54
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 36/52 (69%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
+DYY+IL V A E EIR Y RLA+K+HPD+ + A ++F+EI EAY+
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYE 54
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 36/52 (69%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
+DYY+IL V A E EIR Y RLA+K+HPD+ + A ++F+EI EAY+
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYE 54
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Query: 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDK-QKDRDCATSRFQEINEAYQ 85
DYY++L+V A+ E I+ Y +LALKWHPDK ++++ A RF+++ EAY+
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYE 61
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 28 SLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
SL + Y +L +D +AT ++I+ +Y +LALK+HPDK D A +F+EIN A+
Sbjct: 11 SLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAH 67
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
DYY+IL V +A+++EI+ Y +LA K+HPD KD A +F ++ EAY+
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYE 58
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 36 YYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
YY IL V A+E +I+ + +LA+K+HPDK K D A ++F+EI EAY+
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPD-AEAKFREIAEAYE 57
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 36 YYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD-RDCATSRFQEINEAYQ 85
YY+IL+V A+ ++I+ Y R AL+WHPDK D ++ A +F+E+ EAY+
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYE 54
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
KDYY+ L + A++EEI+ Y R AL++HPDK K+ A +F+EI EAY
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAY 52
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
DYY+IL V A++E+++ Y RLALK+HPDK AT F+ I AY
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKN-HAPGATEAFKAIGTAY 56
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD-RDCATSRFQEINEAYQ 85
+YY++L V A+ E+I+ Y +LAL+WHPDK D ++ A +F+ ++EAY+
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYE 61
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
+ K YY +L V +AT+EE++ Y +LALK+HPDK + +F++I++AY+
Sbjct: 2 MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEG---EKFKQISQAYE 54
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
+ K YY +L V DA++ E++ Y ++ALK+HPDK D +F++I++AY+
Sbjct: 4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD---GAEQFKQISQAYE 56
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 28 SLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
SL A D Y++L V A++ +I+ Y +LA +WHPDK KD A RF +I++AY+
Sbjct: 11 SLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYE 67
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
+++Y +L V A+ EIR + +LALK HPDK + A F +IN AY+
Sbjct: 21 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYE 72
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
+++Y +L V A+ EIR + +LALK HPDK + A F +IN AY+
Sbjct: 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYE 53
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 23 NFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINE 82
N F S + KDYY IL V + I++ Y RLA K+HPD K+ D A ++F+++ E
Sbjct: 17 NLYFQSNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEND-AEAKFKDLAE 75
Query: 83 AYQ 85
A++
Sbjct: 76 AWE 78
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 2 MWDEWV-------DCNNNDEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSN 54
M+DE + + N ND+Q ++ L ++ +DYYKIL V +A ++EI
Sbjct: 344 MYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ-SQKRDYYKILGVKRNAKKQEIIKA 402
Query: 55 YIRLALKWHPD 65
Y +LAL+WHPD
Sbjct: 403 YRKLALQWHPD 413
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 10 NNNDEQTQQDSHVNFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPD 65
N ND+Q ++ L ++ +DYYKIL V +A ++EI Y +LAL+WHPD
Sbjct: 359 NENDQQIREGLEKAQRLLKQ-SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
KDYY I+ V + I++ Y RLA K+HPD K+ D A +RF+E+ EA++
Sbjct: 5 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPD-AEARFKEVAEAWE 55
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 30 LAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ 85
+ K Y +L V A E+E++ Y + ALK+HPDK T +F+EI+EA++
Sbjct: 4 MVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKP---TGDTEKFKEISEAFE 56
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 37 YKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAY 84
Y +L V AT+ +I++ Y R +HPD+ A RF I++AY
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAY 67
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQK-DRDCAT-----SRFQEINEAYQ 85
KD+Y IL D A +++ Y +L L +HPDKQ D T +F EI++A++
Sbjct: 16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWK 73
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATS------RFQEINEAYQ 85
KD+Y IL D A +++ Y +L L +HPDKQ A + +F EI++A++
Sbjct: 10 KDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWK 67
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEA 83
+DYY +L D ++ E+I + + AL+ HPDK + A FQ++ +A
Sbjct: 20 EDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKA 69
>pdb|1IUR|A Chain A, Dnaj Domain Of Human Kiaa0730 Protein
Length = 88
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQ-KDRDCATSRFQEI 80
K+ ++E + E E + RL LKWHPDK ++ D A F+ +
Sbjct: 16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHL 63
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 37 YKILEVDYDAT-EEEIRSNYIRLALKWHPDKQKDRD---CATSRFQEINEAYQ 85
Y +LEV+ + ++++ Y LA K HPD+ K+++ A RF+ I AY+
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYE 70
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 35 DYYKI--LEVDYDATEEEIRSNYIRLALKWHPD-----KQKDRDCATSRFQEINEAYQ 85
+Y+++ L + ++ + S + L ++HPD ++DR A + +IN+AYQ
Sbjct: 5 NYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDAYQ 62
>pdb|1CKL|A Chain A, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|B Chain B, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|C Chain C, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|D Chain D, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|E Chain E, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|F Chain F, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|2O39|C Chain C, Human Adenovirus Type 11 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (membrane Cofactor Protein, Mcp)
pdb|2O39|D Chain D, Human Adenovirus Type 11 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (membrane Cofactor Protein, Mcp)
pdb|3INB|C Chain C, Structure Of The Measles Virus Hemagglutinin Bound To
The Cd46 Receptor
pdb|3INB|D Chain D, Structure Of The Measles Virus Hemagglutinin Bound To
The Cd46 Receptor
pdb|3L89|M Chain M, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|N Chain N, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|O Chain O, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|P Chain P, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|Q Chain Q, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|R Chain R, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|S Chain S, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|T Chain T, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|U Chain U, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|V Chain V, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|W Chain W, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|X Chain X, Human Adenovirus Type 21 Knob In Complex With Domains
Scr1 And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
Length = 126
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 23 NFDFLSLLAKPKDYYKILE-VDYDA 46
F+ + L+ KPK YY+I E VDY
Sbjct: 6 TFEAMELIGKPKPYYEIGERVDYKC 30
>pdb|3O8E|B Chain B, Structure Of Extracelllar Portion Of Cd46 In Complex
With Adenovirus Type 11 Knob
pdb|3O8E|D Chain D, Structure Of Extracelllar Portion Of Cd46 In Complex
With Adenovirus Type 11 Knob
Length = 252
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 23 NFDFLSLLAKPKDYYKILE-VDY 44
F+ + L+ KPK YY+I E VDY
Sbjct: 6 TFEAMELIGKPKPYYEIGERVDY 28
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,985,396
Number of Sequences: 62578
Number of extensions: 105205
Number of successful extensions: 324
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 295
Number of HSP's gapped (non-prelim): 33
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)