Query 034568
Match_columns 91
No_of_seqs 143 out of 1254
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 04:12:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034568.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034568hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 8.8E-24 1.9E-28 154.1 7.3 59 32-90 2-60 (371)
2 KOG0713 Molecular chaperone (D 99.9 1.6E-22 3.6E-27 145.1 7.5 65 26-90 8-72 (336)
3 cd06257 DnaJ DnaJ domain or J- 99.8 3.1E-20 6.8E-25 102.0 7.0 55 35-89 1-55 (55)
4 PRK14288 chaperone protein Dna 99.8 1.7E-20 3.6E-25 137.4 7.0 58 33-90 2-59 (369)
5 smart00271 DnaJ DnaJ molecular 99.8 7.8E-20 1.7E-24 102.1 7.2 57 34-90 1-58 (60)
6 PRK14296 chaperone protein Dna 99.8 1.1E-19 2.3E-24 133.3 7.2 57 33-90 3-59 (372)
7 PRK14286 chaperone protein Dna 99.8 2.1E-19 4.5E-24 131.8 7.3 58 33-90 3-60 (372)
8 PRK14279 chaperone protein Dna 99.8 2.2E-19 4.8E-24 132.4 7.1 58 33-90 8-65 (392)
9 PF00226 DnaJ: DnaJ domain; I 99.8 3.6E-19 7.8E-24 100.8 6.2 55 35-89 1-56 (64)
10 PRK14277 chaperone protein Dna 99.8 6.1E-19 1.3E-23 129.8 7.4 58 33-90 4-61 (386)
11 PRK14285 chaperone protein Dna 99.8 5.7E-19 1.2E-23 129.2 7.1 57 34-90 3-59 (365)
12 PRK14295 chaperone protein Dna 99.8 7.3E-19 1.6E-23 129.5 7.0 58 33-90 8-65 (389)
13 PRK14282 chaperone protein Dna 99.8 1.1E-18 2.5E-23 127.7 7.4 58 33-90 3-61 (369)
14 PRK14294 chaperone protein Dna 99.8 1.3E-18 2.8E-23 127.3 7.5 58 33-90 3-60 (366)
15 PRK14283 chaperone protein Dna 99.8 1.1E-18 2.3E-23 128.2 7.0 58 32-90 3-60 (378)
16 PRK14287 chaperone protein Dna 99.8 1.3E-18 2.8E-23 127.6 7.2 57 33-90 3-59 (371)
17 KOG0712 Molecular chaperone (D 99.8 8.8E-19 1.9E-23 126.6 6.1 54 33-89 3-56 (337)
18 PRK14299 chaperone protein Dna 99.8 1.5E-18 3.3E-23 123.7 7.2 57 33-90 3-59 (291)
19 PRK14297 chaperone protein Dna 99.8 1.6E-18 3.5E-23 127.3 7.5 58 33-90 3-60 (380)
20 PRK14301 chaperone protein Dna 99.8 1.6E-18 3.4E-23 127.2 7.4 58 33-90 3-60 (373)
21 PRK10767 chaperone protein Dna 99.8 1.8E-18 3.9E-23 126.7 7.4 58 33-90 3-60 (371)
22 PRK14298 chaperone protein Dna 99.8 1.6E-18 3.4E-23 127.3 6.9 57 33-90 4-60 (377)
23 KOG0716 Molecular chaperone (D 99.8 1.3E-18 2.9E-23 122.1 6.1 58 33-90 30-87 (279)
24 PRK14281 chaperone protein Dna 99.8 1.9E-18 4.2E-23 127.6 6.9 57 34-90 3-59 (397)
25 PRK14276 chaperone protein Dna 99.8 2.2E-18 4.8E-23 126.6 7.1 57 33-90 3-59 (380)
26 PRK14284 chaperone protein Dna 99.8 2.4E-18 5.2E-23 126.8 7.1 57 34-90 1-57 (391)
27 PRK14278 chaperone protein Dna 99.7 2E-18 4.4E-23 126.8 6.5 56 34-90 3-58 (378)
28 PTZ00037 DnaJ_C chaperone prot 99.7 2.1E-18 4.5E-23 128.3 6.2 54 33-90 27-80 (421)
29 PRK14291 chaperone protein Dna 99.7 2.9E-18 6.3E-23 126.1 7.0 57 33-90 2-58 (382)
30 PRK14280 chaperone protein Dna 99.7 3.3E-18 7.2E-23 125.5 7.0 57 33-90 3-59 (376)
31 PRK14289 chaperone protein Dna 99.7 9.5E-18 2E-22 123.4 7.3 58 33-90 4-61 (386)
32 PRK14290 chaperone protein Dna 99.7 1E-17 2.2E-22 122.6 7.0 57 34-90 3-60 (365)
33 KOG0717 Molecular chaperone (D 99.7 8.7E-18 1.9E-22 124.8 6.3 58 32-89 6-64 (508)
34 PRK10266 curved DNA-binding pr 99.7 1.8E-17 3.9E-22 118.8 6.9 56 34-90 4-59 (306)
35 PRK14300 chaperone protein Dna 99.7 1.6E-17 3.4E-22 121.8 6.6 56 34-90 3-58 (372)
36 TIGR02349 DnaJ_bact chaperone 99.7 1.5E-17 3.3E-22 121.0 6.5 55 35-90 1-55 (354)
37 KOG0691 Molecular chaperone (D 99.7 1.8E-17 3.9E-22 118.4 6.6 58 33-90 4-61 (296)
38 KOG0715 Molecular chaperone (D 99.7 2.2E-17 4.7E-22 117.8 6.2 56 34-90 43-98 (288)
39 KOG0721 Molecular chaperone (D 99.7 3.3E-17 7.2E-22 112.1 6.3 60 31-90 96-155 (230)
40 PRK14293 chaperone protein Dna 99.7 3.6E-17 7.7E-22 120.0 6.9 56 34-90 3-58 (374)
41 PRK14292 chaperone protein Dna 99.7 4.1E-17 8.9E-22 119.5 6.9 56 34-90 2-57 (371)
42 COG2214 CbpA DnaJ-class molecu 99.7 2.1E-16 4.6E-21 105.1 6.8 59 32-90 4-63 (237)
43 PTZ00341 Ring-infected erythro 99.7 2.1E-16 4.6E-21 125.6 7.3 59 31-90 570-628 (1136)
44 PTZ00100 DnaJ chaperone protei 99.7 1.9E-16 4.2E-21 99.6 5.4 54 32-89 63-116 (116)
45 PHA03102 Small T antigen; Revi 99.6 2.7E-16 5.9E-21 103.3 6.0 53 34-90 5-59 (153)
46 KOG0718 Molecular chaperone (D 99.6 2.5E-16 5.3E-21 117.4 6.2 58 32-89 7-67 (546)
47 KOG0719 Molecular chaperone (D 99.6 3E-16 6.5E-21 108.5 5.9 58 32-89 12-71 (264)
48 PRK09430 djlA Dna-J like membr 99.6 4.8E-16 1E-20 109.9 6.3 59 32-90 198-263 (267)
49 PRK05014 hscB co-chaperone Hsc 99.6 3.5E-15 7.6E-20 99.6 7.0 57 34-90 1-64 (171)
50 TIGR03835 termin_org_DnaJ term 99.6 5E-15 1.1E-19 115.7 7.1 55 34-89 2-56 (871)
51 PRK01356 hscB co-chaperone Hsc 99.6 8.8E-15 1.9E-19 97.3 7.0 56 34-89 2-62 (166)
52 PRK03578 hscB co-chaperone Hsc 99.6 1.4E-14 2.9E-19 97.2 7.2 58 32-89 4-68 (176)
53 PRK00294 hscB co-chaperone Hsc 99.6 1.5E-14 3.2E-19 96.8 7.3 58 32-89 2-66 (173)
54 KOG0722 Molecular chaperone (D 99.5 6.7E-15 1.5E-19 103.3 3.4 61 29-90 28-88 (329)
55 KOG0720 Molecular chaperone (D 99.5 1.7E-14 3.7E-19 107.3 5.7 66 25-91 226-291 (490)
56 PHA02624 large T antigen; Prov 99.5 9E-14 1.9E-18 107.1 6.0 54 33-90 10-65 (647)
57 KOG0624 dsRNA-activated protei 99.3 1.9E-12 4.1E-17 94.9 5.9 61 29-89 389-452 (504)
58 PRK01773 hscB co-chaperone Hsc 99.3 5.2E-12 1.1E-16 84.5 7.0 56 34-89 2-64 (173)
59 KOG0550 Molecular chaperone (D 99.3 1.7E-12 3.6E-17 96.3 4.7 62 29-90 368-430 (486)
60 KOG1150 Predicted molecular ch 99.3 4.1E-12 8.8E-17 86.7 5.5 58 32-89 51-109 (250)
61 KOG0714 Molecular chaperone (D 99.2 7.6E-12 1.6E-16 86.7 4.6 58 33-90 2-60 (306)
62 COG5407 SEC63 Preprotein trans 99.2 7.3E-12 1.6E-16 93.7 4.6 58 32-89 96-158 (610)
63 TIGR00714 hscB Fe-S protein as 99.1 4.8E-10 1E-14 74.0 6.0 45 45-89 2-51 (157)
64 KOG0723 Molecular chaperone (D 99.0 9.9E-10 2.1E-14 68.0 4.8 60 26-89 48-107 (112)
65 KOG0568 Molecular chaperone (D 98.9 3.7E-09 8E-14 74.0 5.6 55 33-88 46-101 (342)
66 KOG1789 Endocytosis protein RM 98.9 3.7E-09 8E-14 85.9 5.8 54 32-88 1279-1336(2235)
67 COG5269 ZUO1 Ribosome-associat 98.7 2.9E-08 6.2E-13 70.8 4.1 60 31-90 40-104 (379)
68 KOG0431 Auxilin-like protein a 98.1 5.8E-06 1.3E-10 62.6 5.5 55 34-88 388-449 (453)
69 COG1076 DjlA DnaJ-domain-conta 98.0 5E-06 1.1E-10 55.5 2.9 55 33-87 112-173 (174)
70 KOG3192 Mitochondrial J-type c 98.0 1.1E-05 2.4E-10 53.2 4.0 60 30-89 4-70 (168)
71 PF03656 Pam16: Pam16; InterP 97.0 0.0024 5.1E-08 41.0 5.6 51 33-87 57-107 (127)
72 COG1076 DjlA DnaJ-domain-conta 96.8 0.00088 1.9E-08 44.7 2.4 55 35-89 2-63 (174)
73 PF13446 RPT: A repeated domai 94.2 0.16 3.5E-06 28.1 4.5 27 34-60 5-31 (62)
74 PF14687 DUF4460: Domain of un 93.3 0.34 7.3E-06 30.3 5.2 45 45-89 5-53 (112)
75 PF11833 DUF3353: Protein of u 92.3 0.55 1.2E-05 32.1 5.6 37 43-87 1-37 (194)
76 KOG0724 Zuotin and related mol 87.6 0.89 1.9E-05 32.9 3.8 44 46-89 4-51 (335)
77 PF07709 SRR: Seven Residue Re 81.0 1 2.2E-05 17.8 1.0 13 76-88 2-14 (14)
78 COG5552 Uncharacterized conser 78.8 11 0.00024 22.2 5.6 29 34-62 3-31 (88)
79 KOG3442 Uncharacterized conser 68.1 9.7 0.00021 24.5 3.4 35 35-69 60-94 (132)
80 PF12434 Malate_DH: Malate deh 66.6 8.7 0.00019 18.1 2.3 18 47-64 9-26 (28)
81 COG2879 Uncharacterized small 65.0 16 0.00035 20.7 3.6 28 54-83 27-54 (65)
82 PF10041 DUF2277: Uncharacteri 64.6 27 0.00058 20.5 6.0 44 34-78 3-46 (78)
83 PF15178 TOM_sub5: Mitochondri 63.2 9.9 0.00021 20.3 2.4 24 37-60 2-25 (51)
84 PF08447 PAS_3: PAS fold; Int 48.9 3.9 8.5E-05 22.9 -0.7 30 33-66 5-35 (91)
85 PRK14102 nifW nitrogenase stab 47.4 27 0.0006 21.7 2.9 65 24-88 5-76 (105)
86 KOG2320 RAS effector RIN1 (con 46.3 38 0.00082 27.3 4.1 36 43-87 398-433 (651)
87 PF12725 DUF3810: Protein of u 42.6 1E+02 0.0022 22.6 5.6 57 33-89 81-148 (318)
88 PTZ00043 cytochrome c oxidase 42.5 67 0.0014 22.9 4.4 49 38-89 84-133 (268)
89 PF03206 NifW: Nitrogen fixati 39.1 94 0.002 19.2 5.8 64 25-88 6-75 (105)
90 cd01780 PLC_epsilon_RA Ubiquit 38.1 35 0.00076 20.7 2.2 34 33-66 10-43 (93)
91 PF02216 B: B domain; InterPr 36.9 49 0.0011 18.1 2.5 30 35-67 12-41 (54)
92 KOG3960 Myogenic helix-loop-he 36.3 28 0.0006 25.1 1.8 16 74-89 127-142 (284)
93 PF04967 HTH_10: HTH DNA bindi 34.6 20 0.00044 19.3 0.8 22 38-59 31-52 (53)
94 COG3755 Uncharacterized protei 34.0 60 0.0013 20.8 2.9 38 45-89 47-85 (127)
95 PF00076 RRM_1: RNA recognitio 33.3 36 0.00078 17.7 1.7 22 40-61 4-25 (70)
96 TIGR03180 UraD_2 OHCU decarbox 32.0 91 0.002 20.4 3.7 13 73-85 92-104 (158)
97 PRK00810 nifW nitrogenase stab 31.7 82 0.0018 19.8 3.3 22 24-45 9-30 (113)
98 PF04719 TAFII28: hTAFII28-lik 31.6 43 0.00092 20.1 1.9 14 45-58 77-90 (90)
99 PRK15321 putative type III sec 31.1 1.3E+02 0.0029 18.6 5.1 33 38-70 25-57 (120)
100 PRK13798 putative OHCU decarbo 30.9 96 0.0021 20.5 3.7 42 45-86 42-110 (166)
101 COG0089 RplW Ribosomal protein 30.2 46 0.001 20.2 1.9 20 39-58 25-44 (94)
102 PF04282 DUF438: Family of unk 28.3 38 0.00082 19.5 1.2 25 40-64 7-31 (71)
103 CHL00030 rpl23 ribosomal prote 27.3 57 0.0012 19.6 1.9 20 39-58 23-42 (93)
104 smart00362 RRM_2 RNA recogniti 26.9 68 0.0015 16.1 2.1 21 39-59 4-24 (72)
105 PF01388 ARID: ARID/BRIGHT DNA 26.6 99 0.0022 17.7 2.9 21 40-60 67-89 (92)
106 PF14706 Tnp_DNA_bind: Transpo 26.2 1.1E+02 0.0024 16.8 2.8 40 49-90 15-56 (58)
107 KOG2217 U4/U6.U5 snRNP associa 24.7 1.3E+02 0.0029 24.6 4.0 31 51-82 629-659 (705)
108 smart00360 RRM RNA recognition 24.5 83 0.0018 15.6 2.1 20 40-59 2-21 (71)
109 PF15573 Imm27: Immunity prote 24.3 2.5E+02 0.0054 20.1 4.9 42 23-66 130-171 (259)
110 TIGR03636 L23_arch archaeal ri 24.3 72 0.0016 18.5 1.9 20 39-58 18-37 (77)
111 PF06767 Sif: Sif protein; In 24.0 1.7E+02 0.0037 21.8 4.2 30 53-82 45-74 (337)
112 PRK09498 sifA secreted effecto 23.0 2E+02 0.0043 21.3 4.3 30 53-82 45-74 (336)
113 CHL00185 ycf59 magnesium-proto 22.8 1.2E+02 0.0025 22.8 3.2 36 31-66 247-282 (351)
114 COG3413 Predicted DNA binding 22.6 55 0.0012 22.1 1.4 28 38-65 186-213 (215)
115 PRK05738 rplW 50S ribosomal pr 22.5 80 0.0017 18.8 1.9 20 39-58 24-43 (92)
116 PF09349 OHCU_decarbox: OHCU d 22.2 2E+02 0.0044 18.6 4.0 14 72-85 94-107 (159)
117 PRK12547 RNA polymerase sigma 22.2 59 0.0013 20.6 1.4 27 39-65 137-163 (164)
118 PF03820 Mtc: Tricarboxylate c 21.7 1.1E+02 0.0024 22.4 2.9 27 43-69 45-71 (308)
119 cd04869 ACT_GcvR_2 ACT domains 21.3 1.5E+02 0.0032 16.2 2.9 23 40-62 51-73 (81)
120 cd00590 RRM RRM (RNA recogniti 21.2 1E+02 0.0022 15.5 2.1 20 39-58 4-23 (74)
121 PRK10613 hypothetical protein; 20.9 39 0.00084 19.6 0.3 11 47-57 64-74 (74)
122 cd01047 ACSF Aerobic Cyclase S 20.6 1.6E+02 0.0035 21.8 3.5 36 31-66 231-266 (323)
123 PF10475 DUF2450: Protein of u 20.4 2E+02 0.0043 20.5 3.9 32 48-89 181-212 (291)
124 PF04328 DUF466: Protein of un 20.3 1.8E+02 0.0038 16.3 4.1 25 53-79 26-50 (65)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=8.8e-24 Score=154.12 Aligned_cols=59 Identities=46% Similarity=0.731 Sum_probs=55.6
Q ss_pred CCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 32 ~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
..+|||+||||+++|+.+|||+|||+||++||||++++.++|+++|++|++||++|+|-
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~ 60 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDP 60 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCH
Confidence 46799999999999999999999999999999999997677999999999999999983
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.6e-22 Score=145.10 Aligned_cols=65 Identities=37% Similarity=0.613 Sum_probs=60.2
Q ss_pred hhhhhcCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 26 FLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 26 ~~~~~~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
....+...+|||+||||+.+|+..+||+|||+||+++|||||++.+.|.+.|+.|+.||++|+|.
T Consensus 8 ~~~~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDp 72 (336)
T KOG0713|consen 8 GAEAVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDP 72 (336)
T ss_pred hhhhhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCH
Confidence 34455567999999999999999999999999999999999999999999999999999999984
No 3
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.83 E-value=3.1e-20 Score=102.03 Aligned_cols=55 Identities=53% Similarity=0.825 Sum_probs=51.7
Q ss_pred CchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS 89 (91)
Q Consensus 35 ~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~ 89 (91)
|||+||||+++++.++||++||++++.+|||++++...+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999999999999998755589999999999999986
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.7e-20 Score=137.40 Aligned_cols=58 Identities=40% Similarity=0.651 Sum_probs=53.9
Q ss_pred CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
..|||+||||+++|+.++||+|||+||++||||+++....|+++|++|++||++|+|.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~ 59 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDE 59 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccH
Confidence 3699999999999999999999999999999999986556899999999999999974
No 5
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.82 E-value=7.8e-20 Score=102.13 Aligned_cols=57 Identities=47% Similarity=0.768 Sum_probs=52.9
Q ss_pred CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHHHhcCC
Q 034568 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD-RDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~-~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
.++|+||||+++++.++||++|+++++.+|||++++ ...+.+.|..|++||++|++-
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~ 58 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDP 58 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCC
Confidence 479999999999999999999999999999999986 456899999999999999874
No 6
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=1.1e-19 Score=133.30 Aligned_cols=57 Identities=42% Similarity=0.588 Sum_probs=53.2
Q ss_pred CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
..|||+||||+++|+.++||+|||+||++||||+++++ .|+++|++|++||++|+|.
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~-~a~~~F~~i~~AyevLsD~ 59 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSP-DAHDKMVEINEAADVLLDK 59 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHhcCH
Confidence 46999999999999999999999999999999999764 5899999999999999984
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=2.1e-19 Score=131.80 Aligned_cols=58 Identities=43% Similarity=0.719 Sum_probs=54.1
Q ss_pred CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
..|||+||||+++|+.++||+|||+|+++||||++++...|+++|++|++||++|+|.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 60 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDP 60 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccH
Confidence 4699999999999999999999999999999999987666899999999999999973
No 8
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=2.2e-19 Score=132.40 Aligned_cols=58 Identities=38% Similarity=0.551 Sum_probs=54.5
Q ss_pred CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
..|||+||||+++|+.++||+|||+|++++|||++++.+.|.++|++|++||++|+|.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~ 65 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDP 65 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcch
Confidence 4799999999999999999999999999999999987666899999999999999985
No 9
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.79 E-value=3.6e-19 Score=100.85 Aligned_cols=55 Identities=40% Similarity=0.656 Sum_probs=51.5
Q ss_pred CchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHHhcC
Q 034568 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD-CATSRFQEINEAYQGKRS 89 (91)
Q Consensus 35 ~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~-~a~~~f~~i~~Ay~~L~~ 89 (91)
|+|+||||+++++.++||++|+++++.+|||++++.. .+.+.|..|++||++|++
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~ 56 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSD 56 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCC
Confidence 5899999999999999999999999999999988764 688999999999999986
No 10
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=6.1e-19 Score=129.78 Aligned_cols=58 Identities=52% Similarity=0.743 Sum_probs=54.2
Q ss_pred CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
..|||+||||+++|+.++||+|||++++++|||++++...|+++|++|++||++|+|.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 61 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDP 61 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCH
Confidence 4699999999999999999999999999999999987666899999999999999974
No 11
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=5.7e-19 Score=129.21 Aligned_cols=57 Identities=40% Similarity=0.669 Sum_probs=53.9
Q ss_pred CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
.|||+||||+++|+.++||+|||+|++++|||++++.+.|.++|++|++||++|+|.
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 59 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDD 59 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 699999999999999999999999999999999987666899999999999999984
No 12
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=7.3e-19 Score=129.55 Aligned_cols=58 Identities=48% Similarity=0.710 Sum_probs=54.2
Q ss_pred CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
..|||+||||+++|+.++||+|||+|++++|||+++....|+++|++|++||++|+|-
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 65 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDE 65 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCch
Confidence 4699999999999999999999999999999999987666899999999999999974
No 13
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=1.1e-18 Score=127.71 Aligned_cols=58 Identities=45% Similarity=0.779 Sum_probs=53.5
Q ss_pred CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcCC
Q 034568 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~~~ 90 (91)
..|||+||||+++|+.++||+|||+|+++||||+++.. ..|+++|++|++||++|+|.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~ 61 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDP 61 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcCh
Confidence 46999999999999999999999999999999998753 45899999999999999984
No 14
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.3e-18 Score=127.26 Aligned_cols=58 Identities=43% Similarity=0.701 Sum_probs=54.3
Q ss_pred CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
..|||+||||+++|+.++||+|||+|++++|||++++.+.+.++|+.|++||++|+|.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~ 60 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDP 60 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccH
Confidence 4799999999999999999999999999999999987666899999999999999973
No 15
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.1e-18 Score=128.18 Aligned_cols=58 Identities=40% Similarity=0.702 Sum_probs=53.8
Q ss_pred CCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 32 ~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
...|||+||||+++|+.++||+|||+|++++|||++++ +.|.++|++|++||++|+|.
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~ 60 (378)
T PRK14283 3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDD 60 (378)
T ss_pred CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchh
Confidence 35799999999999999999999999999999999986 45899999999999999984
No 16
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.3e-18 Score=127.58 Aligned_cols=57 Identities=39% Similarity=0.696 Sum_probs=52.9
Q ss_pred CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
..|||+||||+++|+.++||+|||+|++++|||+++.+ .++++|++|++||++|+|.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~-~~~~~f~~i~~Ay~~L~d~ 59 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAP-DAEDKFKEVKEAYDTLSDP 59 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-hHHHHHHHHHHHHHHhCcH
Confidence 46999999999999999999999999999999999764 5889999999999999974
No 17
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=8.8e-19 Score=126.64 Aligned_cols=54 Identities=48% Similarity=0.763 Sum_probs=52.0
Q ss_pred CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS 89 (91)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~ 89 (91)
...+|+||||+++|+.+|||+|||+|+++|||||+++ +.++|++|.+||++|+|
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd 56 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSD 56 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcC
Confidence 5689999999999999999999999999999999998 78999999999999998
No 18
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.5e-18 Score=123.69 Aligned_cols=57 Identities=44% Similarity=0.674 Sum_probs=52.8
Q ss_pred CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
..|||+||||+++|+.++||+|||++++++|||+++.+ .+.++|+.|++||++|+|.
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~~~f~~i~~Ay~~L~d~ 59 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSP-GAEEKFKEINEAYTVLSDP 59 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-hHHHHHHHHHHHHHHhcCH
Confidence 46999999999999999999999999999999999754 4899999999999999973
No 19
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.6e-18 Score=127.34 Aligned_cols=58 Identities=43% Similarity=0.763 Sum_probs=54.3
Q ss_pred CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
..|||+||||+++|+.++||+|||+|+++||||++++.+.|+++|+.|++||++|+|.
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 60 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDP 60 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCH
Confidence 3699999999999999999999999999999999987666899999999999999974
No 20
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.6e-18 Score=127.17 Aligned_cols=58 Identities=43% Similarity=0.771 Sum_probs=54.2
Q ss_pred CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
..|||+||||+++|+.++||+|||+|++++|||++++...|+++|++|++||++|+|.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 60 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDA 60 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcch
Confidence 4699999999999999999999999999999999987666899999999999999974
No 21
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.8e-18 Score=126.66 Aligned_cols=58 Identities=40% Similarity=0.734 Sum_probs=54.0
Q ss_pred CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
..|||+||||+++|+.++||+|||+|++++|||++++...|.++|++|++||++|+|.
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~ 60 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDP 60 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcch
Confidence 4699999999999999999999999999999999986666899999999999999874
No 22
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.6e-18 Score=127.34 Aligned_cols=57 Identities=44% Similarity=0.756 Sum_probs=52.9
Q ss_pred CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
..|||+||||+++|+.++||+|||+|++++|||+++.+ .+.++|++|++||++|+|-
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~~~f~~i~~Ay~vL~d~ 60 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEP-DAEEKFKEISEAYAVLSDA 60 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCCh-hHHHHHHHHHHHHHHhcch
Confidence 46999999999999999999999999999999999764 4889999999999999974
No 23
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.3e-18 Score=122.05 Aligned_cols=58 Identities=43% Similarity=0.642 Sum_probs=55.0
Q ss_pred CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
..++|+||||+++|+.++|||+||+|++++|||++++.+++.++|++||+||++|+|-
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~ 87 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDP 87 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcCh
Confidence 5689999999999999999999999999999999999777999999999999999984
No 24
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.9e-18 Score=127.58 Aligned_cols=57 Identities=44% Similarity=0.750 Sum_probs=53.7
Q ss_pred CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
.|||+||||+++|+.++||+|||+|++++|||++++...|.++|+.|++||++|+|.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 59 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSND 59 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhh
Confidence 599999999999999999999999999999999987666899999999999999973
No 25
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=2.2e-18 Score=126.62 Aligned_cols=57 Identities=35% Similarity=0.652 Sum_probs=53.0
Q ss_pred CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
..|||+||||+++|+.++||+|||+|++++|||+++++ .++++|++|++||++|+|-
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~-~a~~~f~~i~~Ay~vL~d~ 59 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEP-GAEEKYKEVQEAYETLSDP 59 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-CHHHHHHHHHHHHHHhcCH
Confidence 46999999999999999999999999999999999864 4889999999999999973
No 26
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=2.4e-18 Score=126.82 Aligned_cols=57 Identities=44% Similarity=0.697 Sum_probs=53.5
Q ss_pred CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
.|||+||||+++|+.++||+|||++++++|||++++.+.+.++|+.|++||++|+|.
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 57 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDA 57 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCH
Confidence 389999999999999999999999999999999987667899999999999999973
No 27
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=2e-18 Score=126.80 Aligned_cols=56 Identities=38% Similarity=0.640 Sum_probs=52.5
Q ss_pred CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
.|||+||||+++|+.++||+|||+|++++|||++++ +.|+++|+.|++||++|+|.
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~-~~a~~~f~~i~~Ay~vL~d~ 58 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-EEAQEKFKEISVAYEVLSDP 58 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc-HHHHHHHHHHHHHHHHhchh
Confidence 589999999999999999999999999999999986 45889999999999999874
No 28
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.75 E-value=2.1e-18 Score=128.28 Aligned_cols=54 Identities=37% Similarity=0.646 Sum_probs=50.3
Q ss_pred CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
..+||+||||+++|+.++||+|||+||+++|||++++ .++|++|++||++|+|.
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~ 80 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDP 80 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccH
Confidence 5799999999999999999999999999999999864 48999999999999974
No 29
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=2.9e-18 Score=126.06 Aligned_cols=57 Identities=53% Similarity=0.754 Sum_probs=52.9
Q ss_pred CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
..|||+||||+++|+.++||+|||+|++++|||+++++ .+.++|+.|++||++|+|-
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-~~~~~f~~i~~Ay~vLsd~ 58 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNP-EAEEKFKEINEAYQVLSDP 58 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-cHHHHHHHHHHHHHHhcCH
Confidence 36999999999999999999999999999999999874 4889999999999999973
No 30
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=3.3e-18 Score=125.54 Aligned_cols=57 Identities=39% Similarity=0.693 Sum_probs=52.9
Q ss_pred CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
..|||+||||+++|+.++||+|||+|++++|||+++.+ .|.++|++|++||++|+|-
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~-~a~~~f~~i~~Ay~vL~d~ 59 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEE-GADEKFKEISEAYEVLSDD 59 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-cHHHHHHHHHHHHHHhccH
Confidence 36999999999999999999999999999999999864 4899999999999999973
No 31
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=9.5e-18 Score=123.43 Aligned_cols=58 Identities=36% Similarity=0.614 Sum_probs=54.5
Q ss_pred CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
..|||+||||+++|+.+|||+|||++++++|||++++.+.+.++|+.|++||++|+|.
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~ 61 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDP 61 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCH
Confidence 4699999999999999999999999999999999987767999999999999999973
No 32
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=1e-17 Score=122.56 Aligned_cols=57 Identities=46% Similarity=0.764 Sum_probs=53.1
Q ss_pred CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHHhcCC
Q 034568 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD-CATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~-~a~~~f~~i~~Ay~~L~~~ 90 (91)
.|||+||||+++|+.++||+|||+|++++|||+++... .|.++|+.|++||++|+|.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~ 60 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDP 60 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcCh
Confidence 59999999999999999999999999999999987653 6899999999999999984
No 33
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=8.7e-18 Score=124.78 Aligned_cols=58 Identities=47% Similarity=0.781 Sum_probs=53.8
Q ss_pred CCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcC
Q 034568 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQGKRS 89 (91)
Q Consensus 32 ~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~~ 89 (91)
..+.||+||||..++++.+||++||+||+++|||+++.. ++++++|+.|+.||+||+|
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSd 64 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSD 64 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcC
Confidence 356899999999999999999999999999999997665 6799999999999999997
No 34
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.71 E-value=1.8e-17 Score=118.82 Aligned_cols=56 Identities=39% Similarity=0.613 Sum_probs=52.3
Q ss_pred CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
.|||+||||++.++.++||+|||+|++++|||+++.+ .+.++|++|++||++|+|.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~-~~~~~f~~i~~Ay~~L~~~ 59 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP-DAEARFKEVAEAWEVLSDE 59 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-cHHHHHHHHHHHHHHhhhH
Confidence 6999999999999999999999999999999998764 4899999999999999873
No 35
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.6e-17 Score=121.83 Aligned_cols=56 Identities=36% Similarity=0.704 Sum_probs=51.9
Q ss_pred CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
.|||+||||+++|+.++||+|||++++++|||+++.+ .++++|++|++||++|+|.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~-~~~~~f~~i~~Ay~~L~d~ 58 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAK-DAEKKFKEINAAYDVLKDE 58 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-CHHHHHHHHHHHHHHhhhH
Confidence 5999999999999999999999999999999998753 4889999999999999973
No 36
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.71 E-value=1.5e-17 Score=121.00 Aligned_cols=55 Identities=53% Similarity=0.826 Sum_probs=51.1
Q ss_pred CchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 35 ~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
|||+||||+++|+.++||+|||++++++|||+++. ..+.++|+.|++||++|+|.
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~ 55 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD-KEAEEKFKEINEAYEVLSDP 55 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhhCh
Confidence 69999999999999999999999999999999974 34889999999999999974
No 37
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.8e-17 Score=118.39 Aligned_cols=58 Identities=40% Similarity=0.669 Sum_probs=55.7
Q ss_pred CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
..|||.||||+..++..+|++|||..++++|||||++.+.|.+.|+.+.+||++|.|.
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~ 61 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDE 61 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCH
Confidence 5699999999999999999999999999999999999888999999999999999974
No 38
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.2e-17 Score=117.83 Aligned_cols=56 Identities=46% Similarity=0.725 Sum_probs=53.4
Q ss_pred CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
.|||+||||+++|+..|||+||++|+++||||.+..+ ++.++|++|.+||++|++.
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~-~a~~kF~eI~~AYEiLsd~ 98 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK-EASKKFKEISEAYEILSDE 98 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc-chhhHHHHHHHHHHHhcCH
Confidence 3999999999999999999999999999999999997 5999999999999999974
No 39
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=3.3e-17 Score=112.08 Aligned_cols=60 Identities=38% Similarity=0.590 Sum_probs=55.4
Q ss_pred cCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 31 ~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
....|||+||||+++++..|||++||+|++++||||++.+.+.++.|..|.+||+.|+|.
T Consensus 96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~ 155 (230)
T KOG0721|consen 96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDK 155 (230)
T ss_pred hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcch
Confidence 356799999999999999999999999999999999988767889999999999999874
No 40
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=3.6e-17 Score=120.02 Aligned_cols=56 Identities=46% Similarity=0.739 Sum_probs=52.3
Q ss_pred CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
.|||+||||+++++.++||+|||++++++|||+++.+ .+.++|+.|++||++|+|.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~a~~~f~~i~~Ay~vL~~~ 58 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEP-GAEDRFKEINRAYEVLSDP 58 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-CHHHHHHHHHHHHHHHhch
Confidence 5999999999999999999999999999999998764 4889999999999999974
No 41
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=4.1e-17 Score=119.50 Aligned_cols=56 Identities=45% Similarity=0.777 Sum_probs=52.2
Q ss_pred CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
.|||+||||+++|+.++||+|||++++++|||+++.+ .+.++|+.|++||++|+|.
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~-~a~~~~~~i~~Ay~vL~d~ 57 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEK-GAAEKFAQINEAYAVLSDA 57 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCh-hHHHHHHHHHHHHHHhcch
Confidence 4899999999999999999999999999999999864 5899999999999999974
No 42
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.1e-16 Score=105.13 Aligned_cols=59 Identities=44% Similarity=0.659 Sum_probs=55.0
Q ss_pred CCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchH-HHHHHHHHHHHHHHhcCC
Q 034568 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDC-ATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 32 ~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~-a~~~f~~i~~Ay~~L~~~ 90 (91)
...++|+||||+++++..+|+++||++++++|||+++.... +.+.|..|++||++|++.
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~ 63 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDP 63 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCH
Confidence 45689999999999999999999999999999999998774 899999999999999974
No 43
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.66 E-value=2.1e-16 Score=125.62 Aligned_cols=59 Identities=32% Similarity=0.487 Sum_probs=54.6
Q ss_pred cCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 31 ~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
....+||+||||+++|+..+||+|||+||+++|||+++++ .|.++|+.|++||++|+|-
T Consensus 570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp 628 (1136)
T PTZ00341 570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDI 628 (1136)
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCH
Confidence 3467999999999999999999999999999999999886 4889999999999999984
No 44
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.65 E-value=1.9e-16 Score=99.64 Aligned_cols=54 Identities=31% Similarity=0.370 Sum_probs=48.7
Q ss_pred CCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS 89 (91)
Q Consensus 32 ~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~ 89 (91)
...++|+||||+++++.++||++||++++++|||+.++ .+.|++|++||++|.+
T Consensus 63 s~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs----~~~~~kIneAyevL~k 116 (116)
T PTZ00100 63 SKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS----TYIASKVNEAKDLLLK 116 (116)
T ss_pred CHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHhC
Confidence 45799999999999999999999999999999999654 5789999999999963
No 45
>PHA03102 Small T antigen; Reviewed
Probab=99.65 E-value=2.7e-16 Score=103.25 Aligned_cols=53 Identities=30% Similarity=0.535 Sum_probs=48.5
Q ss_pred CCchhhhcCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 34 KDYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 34 ~~~y~iLgl~~~a--~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
..+|+||||+++| +.++||+|||++++++|||++++ .++|+.|++||++|++.
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~ 59 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRES 59 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhH
Confidence 4689999999999 99999999999999999999754 57999999999999863
No 46
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.5e-16 Score=117.41 Aligned_cols=58 Identities=38% Similarity=0.633 Sum_probs=54.0
Q ss_pred CCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHHhcC
Q 034568 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR---DCATSRFQEINEAYQGKRS 89 (91)
Q Consensus 32 ~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~---~~a~~~f~~i~~Ay~~L~~ 89 (91)
.+.++|.+|+||++|+.+||++|||++++.|||||..++ ..|++.|++|.+||++|+|
T Consensus 7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsD 67 (546)
T KOG0718|consen 7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSD 67 (546)
T ss_pred chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcC
Confidence 456899999999999999999999999999999999876 3589999999999999997
No 47
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=3e-16 Score=108.54 Aligned_cols=58 Identities=47% Similarity=0.740 Sum_probs=53.2
Q ss_pred CCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHHHHHhcC
Q 034568 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQK--DRDCATSRFQEINEAYQGKRS 89 (91)
Q Consensus 32 ~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~--~~~~a~~~f~~i~~Ay~~L~~ 89 (91)
...++|+||||..+|+..+||+||+++++.+|||+++ ...++.++|+.|+.||.+|+|
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsD 71 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSD 71 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhH
Confidence 3559999999999999999999999999999999994 445699999999999999986
No 48
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.63 E-value=4.8e-16 Score=109.91 Aligned_cols=59 Identities=32% Similarity=0.473 Sum_probs=52.4
Q ss_pred CCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCC---c----hHHHHHHHHHHHHHHHhcCC
Q 034568 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD---R----DCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 32 ~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~---~----~~a~~~f~~i~~Ay~~L~~~ 90 (91)
...++|+||||++++|.++||++||++++++|||+..+ + +.++++|++|++||++|++.
T Consensus 198 ~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 198 TLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred cHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 44799999999999999999999999999999999643 2 34889999999999999863
No 49
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.59 E-value=3.5e-15 Score=99.59 Aligned_cols=57 Identities=26% Similarity=0.443 Sum_probs=49.7
Q ss_pred CCchhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHhcCC
Q 034568 34 KDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD-----CATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 34 ~~~y~iLgl~~~--a~~~~Ikkayr~l~~~~HPDk~~~~~-----~a~~~f~~i~~Ay~~L~~~ 90 (91)
.|||++|||++. ++..+|+++||++++++|||+..+.. .+.+.|..||+||++|++-
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp 64 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHP 64 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCCh
Confidence 389999999996 78899999999999999999976542 2577899999999999973
No 50
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.57 E-value=5e-15 Score=115.71 Aligned_cols=55 Identities=45% Similarity=0.718 Sum_probs=51.8
Q ss_pred CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS 89 (91)
Q Consensus 34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~ 89 (91)
.|||+||||+++|+..+||++||+|++++|||++++ ..+.++|+.|++||++|++
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSD 56 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSN 56 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCC
Confidence 589999999999999999999999999999999887 4478899999999999987
No 51
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.57 E-value=8.8e-15 Score=97.29 Aligned_cols=56 Identities=23% Similarity=0.474 Sum_probs=48.7
Q ss_pred CCchhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHHHHHhcC
Q 034568 34 KDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD---CATSRFQEINEAYQGKRS 89 (91)
Q Consensus 34 ~~~y~iLgl~~~--a~~~~Ikkayr~l~~~~HPDk~~~~~---~a~~~f~~i~~Ay~~L~~ 89 (91)
.|||++|||++. ++..+|+++||++++++|||++.+.. .+.+.+..||+||++|++
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~d 62 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKD 62 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 489999999997 78999999999999999999987642 244568899999999986
No 52
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.56 E-value=1.4e-14 Score=97.18 Aligned_cols=58 Identities=22% Similarity=0.302 Sum_probs=49.6
Q ss_pred CCCCchhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHhcC
Q 034568 32 KPKDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRDC-----ATSRFQEINEAYQGKRS 89 (91)
Q Consensus 32 ~~~~~y~iLgl~~~--a~~~~Ikkayr~l~~~~HPDk~~~~~~-----a~~~f~~i~~Ay~~L~~ 89 (91)
...|||++||||+. ++..+|+++||++++++|||++.+... +.+.+..||+||++|++
T Consensus 4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~ 68 (176)
T PRK03578 4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRD 68 (176)
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34799999999996 689999999999999999999875432 44557899999999987
No 53
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.56 E-value=1.5e-14 Score=96.81 Aligned_cols=58 Identities=26% Similarity=0.382 Sum_probs=51.2
Q ss_pred CCCCchhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHhcC
Q 034568 32 KPKDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD-----CATSRFQEINEAYQGKRS 89 (91)
Q Consensus 32 ~~~~~y~iLgl~~~--a~~~~Ikkayr~l~~~~HPDk~~~~~-----~a~~~f~~i~~Ay~~L~~ 89 (91)
...|||++|||++. ++..+|+++||++++++|||+..+.. .+.+.|..||+||++|++
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~ 66 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKS 66 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46799999999997 67999999999999999999986642 267789999999999987
No 54
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=6.7e-15 Score=103.32 Aligned_cols=61 Identities=30% Similarity=0.520 Sum_probs=56.3
Q ss_pred hhcCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 29 LLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 29 ~~~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
..+...|.|+||||++.++..+|.+|||+|++++|||++.+++ +.+.|..|..||++|+|.
T Consensus 28 LYCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e-~k~~F~~iAtayeilkd~ 88 (329)
T KOG0722|consen 28 LYCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPE-SKKLFVKIATAYEILKDN 88 (329)
T ss_pred hcccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCch-hhhhhhhhhcccccccch
Confidence 3467789999999999999999999999999999999999976 679999999999999875
No 55
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.7e-14 Score=107.32 Aligned_cols=66 Identities=26% Similarity=0.320 Sum_probs=58.2
Q ss_pred hhhhhhcCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCCC
Q 034568 25 DFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSLD 91 (91)
Q Consensus 25 ~~~~~~~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~~ 91 (91)
+.........|+|.+|||+.+++.++|||.||++|...||||+..+ .|.|.|+.++.||++|.+.+
T Consensus 226 drl~re~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~-~A~Eafk~Lq~Afevig~~~ 291 (490)
T KOG0720|consen 226 DRLSRELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIP-RAEEAFKKLQVAFEVIGDSV 291 (490)
T ss_pred HhhhhhhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCCh-hHHHHHHHHHHHHHHhcchh
Confidence 3344445578999999999999999999999999999999999964 59999999999999998753
No 56
>PHA02624 large T antigen; Provisional
Probab=99.46 E-value=9e-14 Score=107.10 Aligned_cols=54 Identities=24% Similarity=0.453 Sum_probs=49.5
Q ss_pred CCCchhhhcCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 33 PKDYYKILEVDYDA--TEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 33 ~~~~y~iLgl~~~a--~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
..++|++|||++++ +.++||+|||++++++|||++++ .++|++|++||++|++.
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd----eekfk~Ln~AYevL~d~ 65 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQEG 65 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc----HHHHHHHHHHHHHHhcH
Confidence 45799999999999 99999999999999999999754 58999999999999873
No 57
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.34 E-value=1.9e-12 Score=94.87 Aligned_cols=61 Identities=38% Similarity=0.625 Sum_probs=56.1
Q ss_pred hhcCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHHHHHhcC
Q 034568 29 LLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD---CATSRFQEINEAYQGKRS 89 (91)
Q Consensus 29 ~~~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~---~a~~~f~~i~~Ay~~L~~ 89 (91)
.....+|||.||||.++|+..||.||||+++.++|||-..+.+ .|+++|.-|-.|-++|+|
T Consensus 389 kqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd 452 (504)
T KOG0624|consen 389 KQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSD 452 (504)
T ss_pred HHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcC
Confidence 4467899999999999999999999999999999999988853 489999999999999987
No 58
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.33 E-value=5.2e-12 Score=84.53 Aligned_cols=56 Identities=20% Similarity=0.368 Sum_probs=49.6
Q ss_pred CCchhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHhcC
Q 034568 34 KDYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD-----CATSRFQEINEAYQGKRS 89 (91)
Q Consensus 34 ~~~y~iLgl~~~--a~~~~Ikkayr~l~~~~HPDk~~~~~-----~a~~~f~~i~~Ay~~L~~ 89 (91)
.|||++||||+. .+...++++||++.+.+|||+..+.. .+.+....||+||.+|++
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkd 64 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKD 64 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 489999999997 89999999999999999999976642 356678899999999987
No 59
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.7e-12 Score=96.28 Aligned_cols=62 Identities=39% Similarity=0.618 Sum_probs=57.2
Q ss_pred hhcCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcCC
Q 034568 29 LLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 29 ~~~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~~~ 90 (91)
..+.+.++|.|||+...++..+|+++||++++.+|||++.+. .+++.+|+++-+||.+|+|.
T Consensus 368 kkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~ 430 (486)
T KOG0550|consen 368 KKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDP 430 (486)
T ss_pred HHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCH
Confidence 446788999999999999999999999999999999998886 66899999999999999974
No 60
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=4.1e-12 Score=86.68 Aligned_cols=58 Identities=28% Similarity=0.521 Sum_probs=54.0
Q ss_pred CCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcC
Q 034568 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQGKRS 89 (91)
Q Consensus 32 ~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~~ 89 (91)
-+.|+|+||.|.+..+.++||+.||+|++..|||+|++. +.|..+|..|..||..|-+
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n 109 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLEN 109 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhC
Confidence 357999999999999999999999999999999999997 5699999999999999865
No 61
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=7.6e-12 Score=86.69 Aligned_cols=58 Identities=47% Similarity=0.769 Sum_probs=51.0
Q ss_pred CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcCC
Q 034568 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-DCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~~~ 90 (91)
..++|.||||.+.++..+|++|||++++++|||+++.. ..+..+|.+|.+||++|++.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~ 60 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDP 60 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCH
Confidence 46899999999999999999999999999999997776 23556899999999999863
No 62
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.25 E-value=7.3e-12 Score=93.75 Aligned_cols=58 Identities=33% Similarity=0.568 Sum_probs=53.0
Q ss_pred CCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----chHHHHHHHHHHHHHHHhcC
Q 034568 32 KPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD-----RDCATSRFQEINEAYQGKRS 89 (91)
Q Consensus 32 ~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~-----~~~a~~~f~~i~~Ay~~L~~ 89 (91)
.--|||+||||..+++..+||++||+|+.++||||.+. ..+.++.+..|++||..|.|
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd 158 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTD 158 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhh
Confidence 45699999999999999999999999999999999776 24578999999999999986
No 63
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.06 E-value=4.8e-10 Score=73.96 Aligned_cols=45 Identities=24% Similarity=0.385 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHHHhcC
Q 034568 45 DATEEEIRSNYIRLALKWHPDKQKDR-----DCATSRFQEINEAYQGKRS 89 (91)
Q Consensus 45 ~a~~~~Ikkayr~l~~~~HPDk~~~~-----~~a~~~f~~i~~Ay~~L~~ 89 (91)
..+..+|+++||++++++|||+..+. ..+.+.|..||+||++|++
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~ 51 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKD 51 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCC
Confidence 35789999999999999999996553 2367899999999999987
No 64
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=9.9e-10 Score=68.01 Aligned_cols=60 Identities=23% Similarity=0.207 Sum_probs=51.4
Q ss_pred hhhhhcCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568 26 FLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS 89 (91)
Q Consensus 26 ~~~~~~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~ 89 (91)
.++....++..-.||||+++++.+.||.++|+++...|||+.++|-.|. +||||+++|..
T Consensus 48 GF~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAs----KINEAKdlLe~ 107 (112)
T KOG0723|consen 48 GFEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLAS----KINEAKDLLEG 107 (112)
T ss_pred ccccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHH----HHHHHHHHHhc
Confidence 4445556777888999999999999999999999999999999985444 49999999875
No 65
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=3.7e-09 Score=74.00 Aligned_cols=55 Identities=29% Similarity=0.528 Sum_probs=49.0
Q ss_pred CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHH-Hhc
Q 034568 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQ-GKR 88 (91)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~-~L~ 88 (91)
-..+|.+|||..+++.+++|.+|..|++++|||.+.... ..+.|.+|.+||. +|+
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~a-daa~f~qideafrkvlq 101 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEA-DAARFIQIDEAFRKVLQ 101 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccc-cHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999999999887743 6789999999998 554
No 66
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=3.7e-09 Score=85.92 Aligned_cols=54 Identities=33% Similarity=0.530 Sum_probs=47.1
Q ss_pred CCCCchhhhcCCCC----CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhc
Q 034568 32 KPKDYYKILEVDYD----ATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKR 88 (91)
Q Consensus 32 ~~~~~y~iLgl~~~----a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~ 88 (91)
...+.|+||.|+.+ -++++||++|++|+.+||||||+. ..+.|..+|+||+.|.
T Consensus 1279 S~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE---GRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1279 SVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE---GREMFERVNKAYELLS 1336 (2235)
T ss_pred chHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHHHHHH
Confidence 34578999999864 356899999999999999999986 5799999999999997
No 67
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2.9e-08 Score=70.85 Aligned_cols=60 Identities=23% Similarity=0.260 Sum_probs=50.7
Q ss_pred cCCCCchhhhcCCC---CCCHHHHHHHHHHHHHHhCCCCC--CCchHHHHHHHHHHHHHHHhcCC
Q 034568 31 AKPKDYYKILEVDY---DATEEEIRSNYIRLALKWHPDKQ--KDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 31 ~~~~~~y~iLgl~~---~a~~~~Ikkayr~l~~~~HPDk~--~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
+...|+|.+|||+. .+++.+|.++.++.+.+||||+. ++.-+..+.|..|+.||++|.|.
T Consensus 40 Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~ 104 (379)
T COG5269 40 WKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDR 104 (379)
T ss_pred hhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccH
Confidence 45679999999997 58999999999999999999995 22223678999999999999873
No 68
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=98.12 E-value=5.8e-06 Score=62.58 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=42.5
Q ss_pred CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-------HHHHHHHHHHHHHHHhc
Q 034568 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRD-------CATSRFQEINEAYQGKR 88 (91)
Q Consensus 34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~-------~a~~~f~~i~~Ay~~L~ 88 (91)
..=|+-.+|..-+++.+|||+||+.++.+||||.+..+ .+++.|-.+++|++...
T Consensus 388 es~WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~ 449 (453)
T KOG0431|consen 388 ESGWQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN 449 (453)
T ss_pred ccCcccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455556666789999999999999999999977752 36777777888877643
No 69
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=5e-06 Score=55.53 Aligned_cols=55 Identities=33% Similarity=0.548 Sum_probs=48.2
Q ss_pred CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHHHHHh
Q 034568 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDR-------DCATSRFQEINEAYQGK 87 (91)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~-------~~a~~~f~~i~~Ay~~L 87 (91)
..+.|.+||+....+..+|+++||++....|||+..+. ..+.+++++|++||+.+
T Consensus 112 ~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 112 REDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred chhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 36899999999999999999999999999999995442 35788999999999864
No 70
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=1.1e-05 Score=53.22 Aligned_cols=60 Identities=22% Similarity=0.527 Sum_probs=49.4
Q ss_pred hcCCCCchhhhcCCC--CCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHHHhcC
Q 034568 30 LAKPKDYYKILEVDY--DATEEEIRSNYIRLALKWHPDKQKDR-----DCATSRFQEINEAYQGKRS 89 (91)
Q Consensus 30 ~~~~~~~y~iLgl~~--~a~~~~Ikkayr~l~~~~HPDk~~~~-----~~a~~~f~~i~~Ay~~L~~ 89 (91)
+....+||.+||... ..+++.++.-|....+++|||+.+.+ ..|.+....+++||++|++
T Consensus 4 ~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~ 70 (168)
T KOG3192|consen 4 MGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKD 70 (168)
T ss_pred cchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHh
Confidence 455678999998665 46888888899999999999995553 3478889999999999975
No 71
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=97.05 E-value=0.0024 Score=40.96 Aligned_cols=51 Identities=22% Similarity=0.178 Sum_probs=34.6
Q ss_pred CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHh
Q 034568 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGK 87 (91)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L 87 (91)
.....+||||++..+.++|.+.|.+|-...+|+++++.- .=.+|..|.+.|
T Consensus 57 l~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfY----LQSKV~rAKErl 107 (127)
T PF03656_consen 57 LDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFY----LQSKVFRAKERL 107 (127)
T ss_dssp HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HH----HHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHH----HHHHHHHHHHHH
Confidence 346789999999999999999999999999999988742 223455555554
No 72
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.00088 Score=44.69 Aligned_cols=55 Identities=22% Similarity=0.359 Sum_probs=43.8
Q ss_pred CchhhhcCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHhcC
Q 034568 35 DYYKILEVDYD--ATEEEIRSNYIRLALKWHPDKQKDRD-----CATSRFQEINEAYQGKRS 89 (91)
Q Consensus 35 ~~y~iLgl~~~--a~~~~Ikkayr~l~~~~HPDk~~~~~-----~a~~~f~~i~~Ay~~L~~ 89 (91)
+++..+|+++. .+.+.++..|+.+.+.+|||+..... .+.+.+..++.||.+|++
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~ 63 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKD 63 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHH
Confidence 45666777775 46777999999999999999987753 245688899999999875
No 73
>PF13446 RPT: A repeated domain in UCH-protein
Probab=94.23 E-value=0.16 Score=28.10 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=24.7
Q ss_pred CCchhhhcCCCCCCHHHHHHHHHHHHH
Q 034568 34 KDYYKILEVDYDATEEEIRSNYIRLAL 60 (91)
Q Consensus 34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~ 60 (91)
.+.|++|||+++.+.+.|-.+|.....
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999999887
No 74
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=93.31 E-value=0.34 Score=30.34 Aligned_cols=45 Identities=13% Similarity=0.224 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCch----HHHHHHHHHHHHHHHhcC
Q 034568 45 DATEEEIRSNYIRLALKWHPDKQKDRD----CATSRFQEINEAYQGKRS 89 (91)
Q Consensus 45 ~a~~~~Ikkayr~l~~~~HPDk~~~~~----~a~~~f~~i~~Ay~~L~~ 89 (91)
..+..+++.+.|.+-++.|||..+..+ ..++-++.++.--+.|+.
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence 456788999999999999999877653 235556666665555543
No 75
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=92.28 E-value=0.55 Score=32.07 Aligned_cols=37 Identities=30% Similarity=0.346 Sum_probs=29.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHh
Q 034568 43 DYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGK 87 (91)
Q Consensus 43 ~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L 87 (91)
+++|+.+||.+|+.++..+|--| .+.-..|..|||.+
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd--------~~~~~~IEaAYD~I 37 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD--------EKSREAIEAAYDAI 37 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHH
Confidence 47899999999999999998222 35556788899875
No 76
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=87.63 E-value=0.89 Score=32.92 Aligned_cols=44 Identities=32% Similarity=0.440 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC----chHHHHHHHHHHHHHHHhcC
Q 034568 46 ATEEEIRSNYIRLALKWHPDKQKD----RDCATSRFQEINEAYQGKRS 89 (91)
Q Consensus 46 a~~~~Ikkayr~l~~~~HPDk~~~----~~~a~~~f~~i~~Ay~~L~~ 89 (91)
++..+|+.+|+..++..||++... .....+.|++|.+||++|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~ 51 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDD 51 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 567889999999999999998752 11256789999999999986
No 77
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=81.00 E-value=1 Score=17.83 Aligned_cols=13 Identities=23% Similarity=0.667 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhc
Q 034568 76 RFQEINEAYQGKR 88 (91)
Q Consensus 76 ~f~~i~~Ay~~L~ 88 (91)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 5777888888774
No 78
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=78.81 E-value=11 Score=22.19 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=24.8
Q ss_pred CCchhhhcCCCCCCHHHHHHHHHHHHHHh
Q 034568 34 KDYYKILEVDYDATEEEIRSNYIRLALKW 62 (91)
Q Consensus 34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~ 62 (91)
+|--.++|+.+-+++.||+.+-++.++++
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKl 31 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKL 31 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHh
Confidence 44557889999999999999998888887
No 79
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.12 E-value=9.7 Score=24.48 Aligned_cols=35 Identities=26% Similarity=0.217 Sum_probs=29.9
Q ss_pred CchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 034568 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKD 69 (91)
Q Consensus 35 ~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~ 69 (91)
..-+||+|++..+.++|.+.|-.|=...-+.+++.
T Consensus 60 Ea~qILnV~~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 60 EAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred HHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcc
Confidence 45689999999999999999999988886666555
No 80
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=66.64 E-value=8.7 Score=18.12 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHHHhCC
Q 034568 47 TEEEIRSNYIRLALKWHP 64 (91)
Q Consensus 47 ~~~~Ikkayr~l~~~~HP 64 (91)
..++.|.+.|+.++.||-
T Consensus 9 ~~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYHE 26 (28)
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 347788999999999994
No 81
>COG2879 Uncharacterized small protein [Function unknown]
Probab=65.03 E-value=16 Score=20.66 Aligned_cols=28 Identities=36% Similarity=0.465 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHH
Q 034568 54 NYIRLALKWHPDKQKDRDCATSRFQEINEA 83 (91)
Q Consensus 54 ayr~l~~~~HPDk~~~~~~a~~~f~~i~~A 83 (91)
.|-.-+++.|||+.+-. -.|-|..-+.|
T Consensus 27 nYVehmr~~hPd~p~mT--~~EFfrec~da 54 (65)
T COG2879 27 NYVEHMRKKHPDKPPMT--YEEFFRECQDA 54 (65)
T ss_pred HHHHHHHHhCcCCCccc--HHHHHHHHHHh
Confidence 57788899999998763 35555554443
No 82
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=64.60 E-value=27 Score=20.54 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=31.4
Q ss_pred CCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHH
Q 034568 34 KDYYKILEVDYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQ 78 (91)
Q Consensus 34 ~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~ 78 (91)
+|--.+.|+.+.++.+||+.|=.+.+++..=-..++. ...+.|.
T Consensus 3 RnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~-an~eaF~ 46 (78)
T PF10041_consen 3 RNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSA-ANAEAFD 46 (78)
T ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcch-hhHHHHH
Confidence 3444567899999999999999999999855444443 2345554
No 83
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=63.17 E-value=9.9 Score=20.30 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=19.6
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHH
Q 034568 37 YKILEVDYDATEEEIRSNYIRLAL 60 (91)
Q Consensus 37 y~iLgl~~~a~~~~Ikkayr~l~~ 60 (91)
|++=|+.|..+++|.|+..|+-..
T Consensus 2 ~~~egl~pk~DPeE~k~kmR~dvi 25 (51)
T PF15178_consen 2 FRIEGLGPKMDPEEMKRKMREDVI 25 (51)
T ss_pred cccccCCCCCCHHHHHHHHHHHHH
Confidence 456689999999999998887544
No 84
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=48.89 E-value=3.9 Score=22.89 Aligned_cols=30 Identities=27% Similarity=0.589 Sum_probs=19.1
Q ss_pred CCCchhhhcCCCCCCHHHH-HHHHHHHHHHhCCCC
Q 034568 33 PKDYYKILEVDYDATEEEI-RSNYIRLALKWHPDK 66 (91)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~I-kkayr~l~~~~HPDk 66 (91)
..+++++||+++ +++ ......+....|||-
T Consensus 5 s~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD 35 (91)
T PF08447_consen 5 SDNFYEIFGYSP----EEIGKPDFEEWLERIHPDD 35 (91)
T ss_dssp -THHHHHHTS-H----HHHTCBEHHHHHHHB-TTT
T ss_pred eHHHHHHhCCCH----HHhccCCHHHHHhhcCHHH
Confidence 356788999876 445 455666777889984
No 85
>PRK14102 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=47.38 E-value=27 Score=21.65 Aligned_cols=65 Identities=18% Similarity=0.325 Sum_probs=37.8
Q ss_pred hhhhhhhcCCCCchhhhcCCCCC-----CHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHH-HHHHHHHHHhc
Q 034568 24 FDFLSLLAKPKDYYKILEVDYDA-----TEEEIRSNYIRLALKWHPDKQKDR-DCATSRF-QEINEAYQGKR 88 (91)
Q Consensus 24 ~~~~~~~~~~~~~y~iLgl~~~a-----~~~~Ikkayr~l~~~~HPDk~~~~-~~a~~~f-~~i~~Ay~~L~ 88 (91)
......+....++++.|||+-+. ..=-|=|.|.....+.+.+..+.. .+....+ ..+.+||+..-
T Consensus 5 l~~l~~LssAEdFf~ff~v~YDp~vvnV~RLHILkrf~qyl~~~~~~~~~~~e~~~~~~yr~~L~~AY~dF~ 76 (105)
T PRK14102 5 LKEFKKLVDAEDYFQFFELPYDPTVVNVNRLHILKQFSQLIAEIDANFPDLSEEEKLEKYQLALEEAYQVFL 76 (105)
T ss_pred HHHHHHhccHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 34455666777899999998653 444466777777666554432222 2222333 35667777543
No 86
>KOG2320 consensus RAS effector RIN1 (contains VPS domain) [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.25 E-value=38 Score=27.28 Aligned_cols=36 Identities=11% Similarity=0.315 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHh
Q 034568 43 DYDATEEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGK 87 (91)
Q Consensus 43 ~~~a~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L 87 (91)
|..+..++||.+++++.+.|||. ++...+.+|.+.|
T Consensus 398 Ps~~~mEqvk~k~~~m~r~YSP~---------kkl~~Llk~ckLl 433 (651)
T KOG2320|consen 398 PSDVLMEQVKQKFTAMQRRYSPS---------KKLHALLKACKLL 433 (651)
T ss_pred CcHHHHHHHHHHHHHHHHhhChH---------HHHHHHHHHHHHH
Confidence 44567888999999999999994 4455555555544
No 87
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=42.61 E-value=1e+02 Score=22.56 Aligned_cols=57 Identities=18% Similarity=0.134 Sum_probs=36.5
Q ss_pred CCCchhhhcCCC-CCCHHHHHHHHHHHHHH-------hCCCCCCC---chHHHHHHHHHHHHHHHhcC
Q 034568 33 PKDYYKILEVDY-DATEEEIRSNYIRLALK-------WHPDKQKD---RDCATSRFQEINEAYQGKRS 89 (91)
Q Consensus 33 ~~~~y~iLgl~~-~a~~~~Ikkayr~l~~~-------~HPDk~~~---~~~a~~~f~~i~~Ay~~L~~ 89 (91)
+...++-||++. ..+.+|+.+-.+.+..+ .++|..+. +..-.+.++.+.+||+.|.+
T Consensus 81 R~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~ 148 (318)
T PF12725_consen 81 RPPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAE 148 (318)
T ss_pred CcCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 455667799988 68888877666555443 34433211 11236788889999988764
No 88
>PTZ00043 cytochrome c oxidase subunit; Provisional
Probab=42.47 E-value=67 Score=22.92 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=33.1
Q ss_pred hhhcCCCCCCHHH-HHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568 38 KILEVDYDATEEE-IRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS 89 (91)
Q Consensus 38 ~iLgl~~~a~~~~-Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~ 89 (91)
+|=|=+.-.+++. ++|+|++||+-.-=.....+ .+.+..+.+.|++|+-
T Consensus 84 ~ir~e~~ll~~~~l~~ksykqla~d~gmqi~~~~---~~hm~~~le~y~~Lk~ 133 (268)
T PTZ00043 84 RIRGESTLLDPETLPKKSYKQLARDMGMQIVNEP---SEHMLGLLELYEYLKS 133 (268)
T ss_pred eecccccccChhhcchHHHHHHHHHhCceecCCc---hHHHHHHHHHHHhcCc
Confidence 3444444445544 78999999997754443332 5788889999999874
No 89
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=39.11 E-value=94 Score=19.19 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=36.7
Q ss_pred hhhhhhcCCCCchhhhcCCCCC-----CHHHHHHHHHHHHHHhCCCCCCCchHHHHHH-HHHHHHHHHhc
Q 034568 25 DFLSLLAKPKDYYKILEVDYDA-----TEEEIRSNYIRLALKWHPDKQKDRDCATSRF-QEINEAYQGKR 88 (91)
Q Consensus 25 ~~~~~~~~~~~~y~iLgl~~~a-----~~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f-~~i~~Ay~~L~ 88 (91)
+....+....++++.|||+-+. ..--|=+.|........+.-..+........ ..+.+||+..-
T Consensus 6 ~~l~~L~sAEdFf~fF~V~YDp~vv~V~RLHILkrF~~yL~~~~~~~~~~e~~~~~~~R~~L~~AY~dFv 75 (105)
T PF03206_consen 6 EELKKLSSAEDFFDFFGVPYDPKVVNVNRLHILKRFGQYLRAADFAPGLSEEEDWAAYRRALERAYQDFV 75 (105)
T ss_pred HHHHhccCHHHHHHHhCCCcchhHHHHhhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4445566677889999998653 4444667777777777554222222222222 24566776543
No 90
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=38.10 E-value=35 Score=20.74 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=24.2
Q ss_pred CCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCC
Q 034568 33 PKDYYKILEVDYDATEEEIRSNYIRLALKWHPDK 66 (91)
Q Consensus 33 ~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk 66 (91)
+..||.||.++...+..+|-+.=...+++-+||-
T Consensus 10 ~dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~ 43 (93)
T cd01780 10 PDQPYAILRAPRVSTAQDVIQQTLCKARRSNPNP 43 (93)
T ss_pred CCCCeeEEEccccccHHHHHHHHHHHhccCCCCc
Confidence 5689999999998876665555445555557764
No 91
>PF02216 B: B domain; InterPro: IPR003132 This entry represents the immunoglobulin-binding domain found in the Staphylococcus aureus virulence factor protein A (SpA). Protein A contains five highly homologous Ig-binding domains in tandem (designated domains E, D, A, B and C), which share a common structure consisting of three helices in a closed left-handed twist. Protein A can exist in both secreted and membrane-bound forms, and has two distinct Ig-binding activities: each domain can bind Fc-gamma (the constant region of IgG involved in effector functions) and Fab (the Ig fragment responsible for antigen recognition) [].; GO: 0019865 immunoglobulin binding, 0009405 pathogenesis; PDB: 1EDL_A 1EDI_A 1EDJ_A 1EDK_A 2B88_A 2B87_A 2B89_A 1FC2_C 1DEE_H 1ZXG_A ....
Probab=36.93 E-value=49 Score=18.07 Aligned_cols=30 Identities=33% Similarity=0.628 Sum_probs=19.0
Q ss_pred CchhhhcCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 034568 35 DYYKILEVDYDATEEEIRSNYIRLALKWHPDKQ 67 (91)
Q Consensus 35 ~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~ 67 (91)
-+|+||+++.-. ++=|..|.+ .++-||+..
T Consensus 12 AFY~vl~~~nLt--eeQrn~yI~-~lKddPs~s 41 (54)
T PF02216_consen 12 AFYEVLHMPNLT--EEQRNGYIQ-SLKDDPSRS 41 (54)
T ss_dssp HHHHHHCSTTS---HHHHHHHHH-HHHH-GCCH
T ss_pred HHHHHHcCCCcC--HHHHHhHHH-HHhhChHHH
Confidence 489999998653 344566655 456688764
No 92
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=36.26 E-value=28 Score=25.11 Aligned_cols=16 Identities=25% Similarity=0.584 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhcC
Q 034568 74 TSRFQEINEAYQGKRS 89 (91)
Q Consensus 74 ~~~f~~i~~Ay~~L~~ 89 (91)
..+.++||||+++|+-
T Consensus 127 RRRLkKVNEAFE~LKR 142 (284)
T KOG3960|consen 127 RRRLKKVNEAFETLKR 142 (284)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4578899999999973
No 93
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=34.65 E-value=20 Score=19.33 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=16.5
Q ss_pred hhhcCCCCCCHHHHHHHHHHHH
Q 034568 38 KILEVDYDATEEEIRSNYIRLA 59 (91)
Q Consensus 38 ~iLgl~~~a~~~~Ikkayr~l~ 59 (91)
+.|||++.+-...||++-+++.
T Consensus 31 ~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 31 EELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred HHhCCCHHHHHHHHHHHHHHHh
Confidence 4578888777777888877764
No 94
>COG3755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.97 E-value=60 Score=20.84 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHHHHhC-CCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568 45 DATEEEIRSNYIRLALKWH-PDKQKDRDCATSRFQEINEAYQGKRS 89 (91)
Q Consensus 45 ~a~~~~Ikkayr~l~~~~H-PDk~~~~~~a~~~f~~i~~Ay~~L~~ 89 (91)
..-+.++.++|..+.+..+ |++.. ..++-+.||=..+|
T Consensus 47 ~~aDa~LN~AY~~ll~~l~~~~~~~-------aL~kaQRAWi~fRD 85 (127)
T COG3755 47 QAADAELNKAYKALLKRLQDSPRTK-------ALQKAQRAWIAFRD 85 (127)
T ss_pred HHHHHHHHHHHHHHHHHhccChHHH-------HHHHHHHHHHHHhh
Confidence 4567889999999999997 65432 34455555555444
No 95
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=33.30 E-value=36 Score=17.71 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=18.2
Q ss_pred hcCCCCCCHHHHHHHHHHHHHH
Q 034568 40 LEVDYDATEEEIRSNYIRLALK 61 (91)
Q Consensus 40 Lgl~~~a~~~~Ikkayr~l~~~ 61 (91)
=|||++.+.++|+..|.+....
T Consensus 4 ~nlp~~~t~~~l~~~f~~~g~i 25 (70)
T PF00076_consen 4 GNLPPDVTEEELRDFFSQFGKI 25 (70)
T ss_dssp ESETTTSSHHHHHHHHHTTSTE
T ss_pred cCCCCcCCHHHHHHHHHHhhhc
Confidence 4789999999999999876544
No 96
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=31.96 E-value=91 Score=20.44 Aligned_cols=13 Identities=31% Similarity=0.414 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHH
Q 034568 73 ATSRFQEINEAYQ 85 (91)
Q Consensus 73 a~~~f~~i~~Ay~ 85 (91)
..+.|..+|.+|+
T Consensus 92 ~~~~L~~lN~~Y~ 104 (158)
T TIGR03180 92 TRAALLEGNAAYE 104 (158)
T ss_pred HHHHHHHHHHHHH
Confidence 5678888899986
No 97
>PRK00810 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=31.73 E-value=82 Score=19.76 Aligned_cols=22 Identities=32% Similarity=0.732 Sum_probs=14.1
Q ss_pred hhhhhhhcCCCCchhhhcCCCC
Q 034568 24 FDFLSLLAKPKDYYKILEVDYD 45 (91)
Q Consensus 24 ~~~~~~~~~~~~~y~iLgl~~~ 45 (91)
......+....++++.|||+-+
T Consensus 9 l~~l~~LssAEdff~ff~V~YD 30 (113)
T PRK00810 9 LDQLKRLSSAEEFFQLLGVPYD 30 (113)
T ss_pred HHHHHHcccHHHHHHHhCCCCC
Confidence 3444455566678888888753
No 98
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=31.63 E-value=43 Score=20.13 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=10.6
Q ss_pred CCCHHHHHHHHHHH
Q 034568 45 DATEEEIRSNYIRL 58 (91)
Q Consensus 45 ~a~~~~Ikkayr~l 58 (91)
...+..|++|||+|
T Consensus 77 pl~P~hlreA~rrL 90 (90)
T PF04719_consen 77 PLQPDHLREAYRRL 90 (90)
T ss_dssp S--HHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhC
Confidence 46789999999986
No 99
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=31.12 E-value=1.3e+02 Score=18.60 Aligned_cols=33 Identities=12% Similarity=0.237 Sum_probs=27.0
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCc
Q 034568 38 KILEVDYDATEEEIRSNYIRLALKWHPDKQKDR 70 (91)
Q Consensus 38 ~iLgl~~~a~~~~Ikkayr~l~~~~HPDk~~~~ 70 (91)
.+|.||+.++.+.+|-+-.++...+.--+++.+
T Consensus 25 ~l~~LP~la~S~~~KD~I~q~m~~F~dp~~G~p 57 (120)
T PRK15321 25 RLLALPESASSETLKDSIYQEMNAFKDPNSGDS 57 (120)
T ss_pred HHHhCCcccCcHHHHHHHHHHHHHhCCCCCCCc
Confidence 367899999999999999999999964455554
No 100
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=30.94 E-value=96 Score=20.53 Aligned_cols=42 Identities=19% Similarity=0.189 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHH-----------HHHhCCCCCCCc----------------hHHHHHHHHHHHHHHH
Q 034568 45 DATEEEIRSNYIRL-----------ALKWHPDKQKDR----------------DCATSRFQEINEAYQG 86 (91)
Q Consensus 45 ~a~~~~Ikkayr~l-----------~~~~HPDk~~~~----------------~~a~~~f~~i~~Ay~~ 86 (91)
-++.+++..+.... +...|||..... +...+.|..+|.+|+-
T Consensus 42 f~s~~~L~~a~~~~~~~~~~~~~~~~l~~HP~lg~~~~~~~S~~EQ~gl~~l~~~~~~~l~~lN~~Y~~ 110 (166)
T PRK13798 42 FADHDALLAAADEALAGLSEADIDEALAGHPRIGERPASKASAREQAGVADADEAVMAALAAGNRAYEE 110 (166)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCcccCccccccCHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 45555555555433 456799987531 2357789999999973
No 101
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=30.24 E-value=46 Score=20.23 Aligned_cols=20 Identities=40% Similarity=0.491 Sum_probs=17.5
Q ss_pred hhcCCCCCCHHHHHHHHHHH
Q 034568 39 ILEVDYDATEEEIRSNYIRL 58 (91)
Q Consensus 39 iLgl~~~a~~~~Ikkayr~l 58 (91)
+|-|.+.|+..+||+|..++
T Consensus 25 vF~V~~~AtK~~IK~AvE~l 44 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEEL 44 (94)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 57889999999999998765
No 102
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=28.26 E-value=38 Score=19.49 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=19.7
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHhCC
Q 034568 40 LEVDYDATEEEIRSNYIRLALKWHP 64 (91)
Q Consensus 40 Lgl~~~a~~~~Ikkayr~l~~~~HP 64 (91)
..|+.+.+.++||+.|.+.-....|
T Consensus 7 ~~Lh~G~~~e~vk~~F~~~~~~Vs~ 31 (71)
T PF04282_consen 7 KRLHEGEDPEEVKEEFKKLFSDVSA 31 (71)
T ss_pred HHHhCCCCHHHHHHHHHHHHCCCCH
Confidence 4567788999999999888766655
No 103
>CHL00030 rpl23 ribosomal protein L23
Probab=27.27 E-value=57 Score=19.65 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=17.5
Q ss_pred hhcCCCCCCHHHHHHHHHHH
Q 034568 39 ILEVDYDATEEEIRSNYIRL 58 (91)
Q Consensus 39 iLgl~~~a~~~~Ikkayr~l 58 (91)
+|-|++.|+..+||+|.-++
T Consensus 23 ~F~V~~~anK~eIK~avE~l 42 (93)
T CHL00030 23 TFDVDSGSTKTEIKHWIELF 42 (93)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 57789999999999998765
No 104
>smart00362 RRM_2 RNA recognition motif.
Probab=26.94 E-value=68 Score=16.09 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=17.3
Q ss_pred hhcCCCCCCHHHHHHHHHHHH
Q 034568 39 ILEVDYDATEEEIRSNYIRLA 59 (91)
Q Consensus 39 iLgl~~~a~~~~Ikkayr~l~ 59 (91)
|-||+...+.++|++.+.+..
T Consensus 4 i~~l~~~~~~~~l~~~~~~~g 24 (72)
T smart00362 4 VGNLPPDVTEEDLKELFSKFG 24 (72)
T ss_pred EcCCCCcCCHHHHHHHHHhcC
Confidence 458899999999999887654
No 105
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=26.61 E-value=99 Score=17.73 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=11.3
Q ss_pred hcCCCCCCH--HHHHHHHHHHHH
Q 034568 40 LEVDYDATE--EEIRSNYIRLAL 60 (91)
Q Consensus 40 Lgl~~~a~~--~~Ikkayr~l~~ 60 (91)
||+++..+. ..||+.|.+...
T Consensus 67 lg~~~~~~~~~~~L~~~Y~~~L~ 89 (92)
T PF01388_consen 67 LGFPPSSTSAAQQLRQHYEKYLL 89 (92)
T ss_dssp TTS-TTSCHHHHHHHHHHHHHTH
T ss_pred hCCCCCCCcHHHHHHHHHHHHhH
Confidence 566665433 466666666544
No 106
>PF14706 Tnp_DNA_bind: Transposase DNA-binding; PDB: 3ECP_A 4DM0_A 1MUS_A 1MUH_A 1MM8_A.
Probab=26.23 E-value=1.1e+02 Score=16.78 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHh--CCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 034568 49 EEIRSNYIRLALKW--HPDKQKDRDCATSRFQEINEAYQGKRSL 90 (91)
Q Consensus 49 ~~Ikkayr~l~~~~--HPDk~~~~~~a~~~f~~i~~Ay~~L~~~ 90 (91)
.-+.+.+.+++..+ ||.. .-+.+-+....+..||..|++.
T Consensus 15 ~Rl~~Rl~~l~~~la~~p~~--Sip~a~~~wa~tkaAYRF~~N~ 56 (58)
T PF14706_consen 15 KRLTRRLVKLAESLAEKPGA--SIPQACQDWAETKAAYRFFRNP 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHTTTS---HHHHTT-HHHHHHHHHHHT-T
T ss_pred chHHHHHHHHHHHHHHCCCC--ccchhccCHHHHHHHHHhhcCC
Confidence 44667777776654 6643 3344566777888899888763
No 107
>KOG2217 consensus U4/U6.U5 snRNP associated protein [RNA processing and modification]
Probab=24.70 E-value=1.3e+02 Score=24.60 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhCCCCCCCchHHHHHHHHHHH
Q 034568 51 IRSNYIRLALKWHPDKQKDRDCATSRFQEINE 82 (91)
Q Consensus 51 Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~ 82 (91)
-|.|||.|+-+||= ++++....+.+..+|.+
T Consensus 629 pKEAyR~LShKFHG-kgsGK~K~EKR~kr~~e 659 (705)
T KOG2217|consen 629 PKEAYRLLSHKFHG-KGSGKKKTEKRLKRIEE 659 (705)
T ss_pred HHHHHHHHhHhhcC-CCCchhHHHHHHHHHHH
Confidence 57899999999995 55554444555555543
No 108
>smart00360 RRM RNA recognition motif.
Probab=24.46 E-value=83 Score=15.62 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=16.4
Q ss_pred hcCCCCCCHHHHHHHHHHHH
Q 034568 40 LEVDYDATEEEIRSNYIRLA 59 (91)
Q Consensus 40 Lgl~~~a~~~~Ikkayr~l~ 59 (91)
-||+...+.++|+..+....
T Consensus 2 ~~l~~~~~~~~l~~~f~~~g 21 (71)
T smart00360 2 GNLPPDVTEEELRELFSKFG 21 (71)
T ss_pred CCCCcccCHHHHHHHHHhhC
Confidence 47888899999999888664
No 109
>PF15573 Imm27: Immunity protein 27
Probab=24.30 E-value=2.5e+02 Score=20.10 Aligned_cols=42 Identities=24% Similarity=0.230 Sum_probs=31.0
Q ss_pred hhhhhhhhcCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCC
Q 034568 23 NFDFLSLLAKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDK 66 (91)
Q Consensus 23 ~~~~~~~~~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk 66 (91)
.......+..-.++.+++| .+|+-+||-..|...++..-+++
T Consensus 130 ~~~Irdsld~fln~~~~~~--e~atieEig~~Y~d~~~~~d~~~ 171 (259)
T PF15573_consen 130 EIAIRDSLDSFLNYRDIIG--EEATIEEIGEYYFDYVKNKDTDC 171 (259)
T ss_pred HHHHHHHHHHHhhHHHHhc--ccCcHHHHHHHHHHHHHccCccc
Confidence 3444444444456666665 67899999999999999988887
No 110
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=24.30 E-value=72 Score=18.50 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=17.2
Q ss_pred hhcCCCCCCHHHHHHHHHHH
Q 034568 39 ILEVDYDATEEEIRSNYIRL 58 (91)
Q Consensus 39 iLgl~~~a~~~~Ikkayr~l 58 (91)
+|-|++.++..+||+|.-++
T Consensus 18 ~F~V~~~anK~eIK~avE~l 37 (77)
T TIGR03636 18 TFIVDRKATKGDIKRAVEKL 37 (77)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 46789999999999998776
No 111
>PF06767 Sif: Sif protein; InterPro: IPR010637 This family consists of several SifA and SifB and SseJ proteins, which seem to be specific to the Salmonella species. SifA, SifB and SseJ have been demonstrated to localise to the Salmonella-containing vacuole (SCV) and to Salmonella-induced filaments (Sifs). Trafficking of SseJ and SifB away from the SCV requires the SPI-2 effector SifA. SseJ trafficking away from the SCV along Sifs is unnecessary for its virulence function [].; PDB: 3HW2_A 3CXB_A.
Probab=24.04 E-value=1.7e+02 Score=21.85 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=20.3
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHH
Q 034568 53 SNYIRLALKWHPDKQKDRDCATSRFQEINE 82 (91)
Q Consensus 53 kayr~l~~~~HPDk~~~~~~a~~~f~~i~~ 82 (91)
+|..-+...+|||.++.+......|-++.+
T Consensus 45 eA~~cI~eLc~~~~~pT~~~l~~iF~~LKe 74 (337)
T PF06767_consen 45 EALECIFELCHPDPPPTRERLEDIFFELKE 74 (337)
T ss_dssp HHHHHHHHHHSSSS---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 678888888899998887666666666654
No 112
>PRK09498 sifA secreted effector protein SifA; Reviewed
Probab=23.01 E-value=2e+02 Score=21.32 Aligned_cols=30 Identities=23% Similarity=0.191 Sum_probs=21.9
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHH
Q 034568 53 SNYIRLALKWHPDKQKDRDCATSRFQEINE 82 (91)
Q Consensus 53 kayr~l~~~~HPDk~~~~~~a~~~f~~i~~ 82 (91)
+|.+=+...+|||....++...+.|.++.+
T Consensus 45 eA~~CI~eLchp~~~~trE~i~~~F~~Lk~ 74 (336)
T PRK09498 45 KADRCLHEMLFADRAPTRERLTEIFFELKE 74 (336)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 556666777888888887777777777654
No 113
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=22.83 E-value=1.2e+02 Score=22.82 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=24.4
Q ss_pred cCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCC
Q 034568 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDK 66 (91)
Q Consensus 31 ~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk 66 (91)
..+.++|+.|||.+..=..+|-+.-...+.+.-|-.
T Consensus 247 ~~R~~Fy~alGld~~~yD~~Vi~~Tn~~a~rvFP~~ 282 (351)
T CHL00185 247 LQRSDFYAAIGLDARQFDMHVIRKTNESAARLFPVV 282 (351)
T ss_pred cchHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCee
Confidence 467899999999987544444444455566666765
No 114
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=22.62 E-value=55 Score=22.11 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=22.7
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHhCCC
Q 034568 38 KILEVDYDATEEEIRSNYIRLALKWHPD 65 (91)
Q Consensus 38 ~iLgl~~~a~~~~Ikkayr~l~~~~HPD 65 (91)
+.|||++.+-.+-||+|=++++..+=.+
T Consensus 186 ~~lGISkst~~ehLRrAe~Kl~~~~~~~ 213 (215)
T COG3413 186 KELGISKSTLSEHLRRAERKLIEAYFDE 213 (215)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 4689999888889999999998776443
No 115
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=22.47 E-value=80 Score=18.81 Aligned_cols=20 Identities=40% Similarity=0.551 Sum_probs=17.1
Q ss_pred hhcCCCCCCHHHHHHHHHHH
Q 034568 39 ILEVDYDATEEEIRSNYIRL 58 (91)
Q Consensus 39 iLgl~~~a~~~~Ikkayr~l 58 (91)
+|-|++.++..+||++.-++
T Consensus 24 ~F~V~~~a~K~eIK~aie~l 43 (92)
T PRK05738 24 VFEVAPDATKPEIKAAVEKL 43 (92)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 46788999999999988765
No 116
>PF09349 OHCU_decarbox: OHCU decarboxylase; InterPro: IPR018020 The proteins in this entry are OHCU decarboxylase, an enzyme of the purine catabolism that catalyses the conversion of OHCU into S(+)-allantoin []; it is the third step of the conversion of uric acid (a purine derivative) to allantoin. Step one is catalysed by urate oxidase (IPR002042 from INTERPRO) and step two is catalysed by hydroxyisourate hydrolase (IPR000895 from INTERPRO). ; PDB: 3O7I_B 3O7H_B 3O7J_A 3O7K_A 2Q37_A 2O70_B 2O73_C 2O74_C 2O8I_A.
Probab=22.23 E-value=2e+02 Score=18.63 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHH
Q 034568 72 CATSRFQEINEAYQ 85 (91)
Q Consensus 72 ~a~~~f~~i~~Ay~ 85 (91)
...+.|..+|.+|+
T Consensus 94 ~~~~~L~~lN~~Y~ 107 (159)
T PF09349_consen 94 EELAELAALNQAYE 107 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35677888899886
No 117
>PRK12547 RNA polymerase sigma factor; Provisional
Probab=22.23 E-value=59 Score=20.61 Aligned_cols=27 Identities=15% Similarity=0.081 Sum_probs=13.3
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHhCCC
Q 034568 39 ILEVDYDATEEEIRSNYIRLALKWHPD 65 (91)
Q Consensus 39 iLgl~~~a~~~~Ikkayr~l~~~~HPD 65 (91)
+||++++.-...+.++-+++-..+-||
T Consensus 137 ~lgis~~tV~~~l~Rar~~Lr~~l~~~ 163 (164)
T PRK12547 137 ICGCAVGTIKSRVSRARNRLQELLKVD 163 (164)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 345554444444555555555544443
No 118
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=21.74 E-value=1.1e+02 Score=22.39 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 034568 43 DYDATEEEIRSNYIRLALKWHPDKQKD 69 (91)
Q Consensus 43 ~~~a~~~~Ikkayr~l~~~~HPDk~~~ 69 (91)
+++.+.++|-+|-+-.--.+|||-+..
T Consensus 45 ~~~~~~~~lw~Ak~l~~Sa~HPDTge~ 71 (308)
T PF03820_consen 45 PPGLTDDELWKAKKLYDSAFHPDTGEK 71 (308)
T ss_pred CCCCCHHHHHHHHHHhhcccCCCCCCc
Confidence 344699999999999999999997443
No 119
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=21.27 E-value=1.5e+02 Score=16.19 Aligned_cols=23 Identities=13% Similarity=0.149 Sum_probs=18.9
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHh
Q 034568 40 LEVDYDATEEEIRSNYIRLALKW 62 (91)
Q Consensus 40 Lgl~~~a~~~~Ikkayr~l~~~~ 62 (91)
+.+|...+..++++.++.++..+
T Consensus 51 v~~p~~~~~~~l~~~l~~l~~~~ 73 (81)
T cd04869 51 LALPAGTDLDALREELEELCDDL 73 (81)
T ss_pred EecCCCCCHHHHHHHHHHHHHHh
Confidence 45676678999999999998775
No 120
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=21.19 E-value=1e+02 Score=15.50 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=17.0
Q ss_pred hhcCCCCCCHHHHHHHHHHH
Q 034568 39 ILEVDYDATEEEIRSNYIRL 58 (91)
Q Consensus 39 iLgl~~~a~~~~Ikkayr~l 58 (91)
|-||+...+.++|+.-+...
T Consensus 4 i~~l~~~~~~~~i~~~~~~~ 23 (74)
T cd00590 4 VGNLPPDVTEEDLRELFSKF 23 (74)
T ss_pred EeCCCCccCHHHHHHHHHhc
Confidence 45889999999999999885
No 121
>PRK10613 hypothetical protein; Provisional
Probab=20.91 E-value=39 Score=19.61 Aligned_cols=11 Identities=27% Similarity=0.516 Sum_probs=8.4
Q ss_pred CHHHHHHHHHH
Q 034568 47 TEEEIRSNYIR 57 (91)
Q Consensus 47 ~~~~Ikkayr~ 57 (91)
+-.+||.+||+
T Consensus 64 Tv~QIK~aYRq 74 (74)
T PRK10613 64 TVKQIKQAYRQ 74 (74)
T ss_pred HHHHHHHHhcC
Confidence 56778999884
No 122
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=20.62 E-value=1.6e+02 Score=21.82 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=24.7
Q ss_pred cCCCCchhhhcCCCCCCHHHHHHHHHHHHHHhCCCC
Q 034568 31 AKPKDYYKILEVDYDATEEEIRSNYIRLALKWHPDK 66 (91)
Q Consensus 31 ~~~~~~y~iLgl~~~a~~~~Ikkayr~l~~~~HPDk 66 (91)
..+.++|+.|||.+..=..+|-+.-.+.+.+.-|-.
T Consensus 231 ~~R~~Fy~alGld~~~yD~~Vi~~Tn~~s~rvFP~~ 266 (323)
T cd01047 231 HQRPDFYEALGLDTTEFDMHVIRETNETAARVFPAV 266 (323)
T ss_pred cchHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCee
Confidence 457799999999987544444444555666666765
No 123
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=20.36 E-value=2e+02 Score=20.46 Aligned_cols=32 Identities=25% Similarity=0.543 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 034568 48 EEEIRSNYIRLALKWHPDKQKDRDCATSRFQEINEAYQGKRS 89 (91)
Q Consensus 48 ~~~Ikkayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~~ 89 (91)
.+.+...+.+++..+-| +.|..|.+||..|.+
T Consensus 181 ~~~ld~~l~~~~~~Fd~----------~~Y~~v~~AY~lLgk 212 (291)
T PF10475_consen 181 EEQLDSDLSKVCQDFDP----------DKYSKVQEAYQLLGK 212 (291)
T ss_pred HHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHhh
Confidence 45577777777777755 577778888888764
No 124
>PF04328 DUF466: Protein of unknown function (DUF466); InterPro: IPR007423 This is a small bacterial protein of unknown function.
Probab=20.34 E-value=1.8e+02 Score=16.26 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=16.6
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHH
Q 034568 53 SNYIRLALKWHPDKQKDRDCATSRFQE 79 (91)
Q Consensus 53 kayr~l~~~~HPDk~~~~~~a~~~f~~ 79 (91)
..|-.-.+..|||..+-.. .|-|..
T Consensus 26 e~Yv~H~~~~HP~~p~ms~--~eF~r~ 50 (65)
T PF04328_consen 26 ERYVEHMRRHHPDEPPMSE--REFFRE 50 (65)
T ss_pred HHHHHHHHHHCcCCCCCCH--HHHHHH
Confidence 4677788899999966532 344443
Done!