Query 034571
Match_columns 91
No_of_seqs 123 out of 615
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 04:14:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034571.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034571hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0356 Mitochondrial chaperon 99.8 9.8E-21 2.1E-25 159.7 6.4 70 1-70 406-479 (550)
2 COG0459 GroL Chaperonin GroEL 99.7 1.8E-16 4E-21 131.7 7.8 80 1-82 376-461 (524)
3 PRK12850 groEL chaperonin GroE 99.6 3.5E-16 7.6E-21 129.2 8.0 79 1-81 392-473 (544)
4 CHL00093 groEL chaperonin GroE 99.6 2.7E-16 5.9E-21 129.1 7.3 75 1-77 391-470 (529)
5 PTZ00114 Heat shock protein 60 99.6 3.6E-16 7.9E-21 129.2 7.9 75 1-77 404-484 (555)
6 PLN03167 Chaperonin-60 beta su 99.6 2.4E-16 5.3E-21 132.3 6.1 75 1-77 446-525 (600)
7 PRK12852 groEL chaperonin GroE 99.6 4.6E-16 9.9E-21 128.2 7.2 80 1-82 392-474 (545)
8 PRK12851 groEL chaperonin GroE 99.6 9.1E-16 2E-20 126.7 7.8 79 1-81 392-473 (541)
9 PRK00013 groEL chaperonin GroE 99.6 1.3E-15 2.9E-20 125.9 7.1 79 1-81 391-472 (542)
10 cd03344 GroEL GroEL_like type 99.6 1.6E-15 3.4E-20 124.6 7.3 80 1-82 389-471 (520)
11 TIGR02348 GroEL chaperonin Gro 99.6 3.3E-15 7.2E-20 122.6 7.1 75 1-77 390-467 (524)
12 PRK12849 groEL chaperonin GroE 99.6 3.5E-15 7.7E-20 123.4 7.1 79 1-81 391-472 (542)
13 cd03343 cpn60 cpn60 chaperonin 99.6 6.2E-15 1.3E-19 119.2 7.2 79 2-82 380-463 (517)
14 PRK14104 chaperonin GroEL; Pro 99.6 6.5E-15 1.4E-19 121.9 7.1 76 1-78 392-470 (546)
15 TIGR02345 chap_CCT_eta T-compl 99.6 7.4E-15 1.6E-19 119.7 7.0 80 1-82 382-466 (522)
16 TIGR02340 chap_CCT_alpha T-com 99.6 7.4E-15 1.6E-19 120.1 6.9 80 1-82 384-468 (536)
17 cd03341 TCP1_theta TCP-1 (CTT 99.5 1.1E-14 2.4E-19 117.5 7.0 79 1-81 332-415 (472)
18 cd03342 TCP1_zeta TCP-1 (CTT o 99.5 1.5E-14 3.3E-19 117.2 7.0 78 2-81 346-428 (484)
19 TIGR02346 chap_CCT_theta T-com 99.5 1.6E-14 3.5E-19 118.3 6.8 78 2-81 381-463 (531)
20 cd00309 chaperonin_type_I_II c 99.5 3.5E-14 7.5E-19 113.1 7.5 80 1-82 328-412 (464)
21 cd03338 TCP1_delta TCP-1 (CTT 99.5 2.7E-14 5.9E-19 115.6 7.0 79 1-81 378-461 (515)
22 cd03339 TCP1_epsilon TCP-1 (CT 99.5 3E-14 6.5E-19 116.1 6.9 78 2-81 390-472 (526)
23 PTZ00212 T-complex protein 1 s 99.5 3.1E-14 6.8E-19 116.5 7.1 80 1-82 388-472 (533)
24 TIGR02344 chap_CCT_gamma T-com 99.5 4.1E-14 9E-19 115.0 7.4 78 2-81 384-466 (525)
25 cd03336 TCP1_beta TCP-1 (CTT o 99.5 3.5E-14 7.5E-19 115.7 6.9 78 2-81 377-459 (517)
26 cd03335 TCP1_alpha TCP-1 (CTT 99.5 4.1E-14 8.8E-19 115.3 7.1 78 2-81 381-463 (527)
27 TIGR02347 chap_CCT_zeta T-comp 99.5 4.1E-14 8.9E-19 116.4 6.7 78 2-81 389-471 (531)
28 TIGR02339 thermosome_arch ther 99.5 4.9E-14 1.1E-18 114.5 6.8 79 2-82 383-466 (519)
29 TIGR02342 chap_CCT_delta T-com 99.5 8.7E-14 1.9E-18 113.4 7.0 78 2-81 380-462 (517)
30 cd03340 TCP1_eta TCP-1 (CTT or 99.5 9E-14 2E-18 113.0 7.1 78 2-81 382-464 (522)
31 TIGR02341 chap_CCT_beta T-comp 99.5 1.6E-13 3.4E-18 112.4 7.1 78 2-81 378-460 (519)
32 TIGR02343 chap_CCT_epsi T-comp 99.4 1.7E-13 3.7E-18 112.4 7.1 79 2-82 394-477 (532)
33 cd03337 TCP1_gamma TCP-1 (CTT 99.4 2E-13 4.4E-18 110.4 7.3 78 2-81 343-425 (480)
34 PF00118 Cpn60_TCP1: TCP-1/cpn 99.3 3.7E-12 8.1E-17 99.5 5.9 78 2-81 348-430 (485)
35 KOG0361 Chaperonin complex com 97.6 0.0001 2.2E-09 62.9 5.0 67 5-71 389-460 (543)
36 KOG0359 Chaperonin complex com 96.9 0.002 4.3E-08 55.3 6.0 69 1-69 379-452 (520)
37 KOG0358 Chaperonin complex com 96.9 0.0018 3.9E-08 55.3 5.0 75 5-81 400-479 (534)
38 KOG0363 Chaperonin complex com 96.0 0.017 3.8E-07 49.4 5.8 77 5-83 385-466 (527)
39 KOG0362 Chaperonin complex com 95.9 0.011 2.3E-07 51.2 4.1 76 5-82 387-467 (537)
40 KOG0357 Chaperonin complex com 95.9 0.016 3.5E-07 48.6 5.0 74 2-77 258-336 (400)
41 KOG0360 Chaperonin complex com 82.3 4.1 8.9E-05 35.8 6.0 80 1-82 390-474 (545)
42 KOG0364 Chaperonin complex com 77.5 2.6 5.6E-05 36.8 3.3 83 5-89 387-474 (527)
43 smart00576 BTP Bromodomain tra 37.6 66 0.0014 20.3 3.6 28 49-76 4-31 (77)
44 PF07524 Bromo_TP: Bromodomain 37.5 69 0.0015 19.9 3.7 26 48-73 3-28 (77)
45 cd07606 BAR_SFC_plant The Bin/ 31.7 1.4E+02 0.0031 22.5 5.2 40 24-63 61-100 (202)
46 KOG3954 Electron transfer flav 29.6 23 0.0005 29.5 0.6 20 4-23 243-262 (336)
47 PF08221 HTH_9: RNA polymerase 28.5 29 0.00063 21.4 0.8 46 42-88 16-61 (62)
48 PHA02682 ORF080 virion core pr 26.1 37 0.00079 27.4 1.2 24 4-27 237-262 (280)
49 PF08299 Bac_DnaA_C: Bacterial 24.6 88 0.0019 19.5 2.5 31 41-71 32-63 (70)
50 PF07960 CBP4: CBP4; InterPro 24.1 40 0.00086 24.5 1.0 21 12-32 9-29 (128)
51 COG3962 Acetolactate synthase 22.5 38 0.00082 30.3 0.7 36 3-38 217-252 (617)
52 KOG0177 20S proteasome, regula 22.0 1.5E+02 0.0032 23.3 3.8 43 23-65 131-176 (200)
53 KOG3495 Mitochondrial F1F0-ATP 21.4 1.7E+02 0.0038 18.3 3.4 24 42-65 15-38 (50)
54 TIGR00756 PPR pentatricopeptid 21.0 1E+02 0.0023 14.6 2.0 20 3-22 14-33 (35)
55 PLN02842 nucleotide kinase 20.8 56 0.0012 28.3 1.4 19 2-20 241-259 (505)
56 COG5521 Predicted integral mem 20.6 68 0.0015 26.2 1.7 60 20-80 193-256 (275)
57 cd04240 AAK_UC AAK_UC: Unchara 20.3 1.3E+02 0.0028 22.1 3.1 18 16-33 25-45 (203)
No 1
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=9.8e-21 Score=159.73 Aligned_cols=70 Identities=30% Similarity=0.307 Sum_probs=65.9
Q ss_pred CcchHHHHHHhHHHHHhhccccCchHHHHHhHHHhhhhhh----hHHHHHHHHHHHHHHHHHHHHhcCCCCcch
Q 034571 1 MNITLDNARIAVKAALEEGIVPGGGVALLHASKVLSICSN----LKTLISKLVLRFYRMLLRFLFFFFPFSLTS 70 (91)
Q Consensus 1 ~K~RieDALnAtrAAveeGIVpGGG~aLl~a~~~L~~l~g----~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~ 70 (91)
||+|++||||||++|+|||+|||||++|++|++.|++++. +++.|++||++||+.|++.|+.|+|+|-..
T Consensus 406 kk~rv~dalnat~aaveeGivpGGG~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~ 479 (550)
T KOG0356|consen 406 KKDRVEDALNATRAAVEEGIVPGGGTALLRAIPVLDELKATNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSV 479 (550)
T ss_pred hhhhHHHHHHHHHHHhhcCcccCCchHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhhHHHHHHhcCCchHH
Confidence 6999999999999999999999999999999999999875 399999999999999999999999998643
No 2
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.8e-16 Score=131.75 Aligned_cols=80 Identities=31% Similarity=0.301 Sum_probs=71.6
Q ss_pred CcchHHHHHHhHHHHHhhc-cccCchHHHHHhHHHhhhh----hh-hHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhh
Q 034571 1 MNITLDNARIAVKAALEEG-IVPGGGVALLHASKVLSIC----SN-LKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFV 74 (91)
Q Consensus 1 ~K~RieDALnAtrAAveeG-IVpGGG~aLl~a~~~L~~l----~g-~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~ 74 (91)
+|.+++|||+++++|+|+| ||||||+++++++..|++. .+ .+++|++++.+||+.|.+||++|+||| +++.+
T Consensus 376 ~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d--~~~v~ 453 (524)
T COG0459 376 KERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLD--PIEVL 453 (524)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCC--HHHHH
Confidence 4789999999999999999 9999999999999999963 24 899999999999999999999999995 57777
Q ss_pred hhhheeee
Q 034571 75 SSLIVVHR 82 (91)
Q Consensus 75 ~~~~~~~~ 82 (91)
+.|---|-
T Consensus 454 ~~L~~~~~ 461 (524)
T COG0459 454 SKLRSAHA 461 (524)
T ss_pred HHHHhccc
Confidence 77766554
No 3
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=99.65 E-value=3.5e-16 Score=129.22 Aligned_cols=79 Identities=34% Similarity=0.330 Sum_probs=71.2
Q ss_pred CcchHHHHHHhHHHHHhhccccCchHHHHHhHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhh
Q 034571 1 MNITLDNARIAVKAALEEGIVPGGGVALLHASKVLSIC---SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVSSL 77 (91)
Q Consensus 1 ~K~RieDALnAtrAAveeGIVpGGG~aLl~a~~~L~~l---~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~~~ 77 (91)
++++++||++++++|+++|+|||||+++++++..|+++ .+++++|++++.+||+.|.++|++|+|+| .++.++.|
T Consensus 392 ~er~i~DAl~~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d--~~~v~~~l 469 (544)
T PRK12850 392 KKDRVDDALHATRAAVEEGIVPGGGVALLRARSALRGLKGANADETAGIDIVRRALEEPLRQIATNAGFE--GSVVVGKV 469 (544)
T ss_pred HHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHH
Confidence 36899999999999999999999999999999999864 56799999999999999999999999998 66777777
Q ss_pred heee
Q 034571 78 IVVH 81 (91)
Q Consensus 78 ~~~~ 81 (91)
.--|
T Consensus 470 ~~~~ 473 (544)
T PRK12850 470 AELP 473 (544)
T ss_pred HhhC
Confidence 6555
No 4
>CHL00093 groEL chaperonin GroEL
Probab=99.65 E-value=2.7e-16 Score=129.09 Aligned_cols=75 Identities=29% Similarity=0.320 Sum_probs=66.4
Q ss_pred CcchHHHHHHhHHHHHhhccccCchHHHHHhHHHhhhh-----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhh
Q 034571 1 MNITLDNARIAVKAALEEGIVPGGGVALLHASKVLSIC-----SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVS 75 (91)
Q Consensus 1 ~K~RieDALnAtrAAveeGIVpGGG~aLl~a~~~L~~l-----~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~ 75 (91)
++++++||++++|+|+++|+|||||++++++++.|+++ ++++++|++++.+||+.|.++|++|+|+|.. +.++
T Consensus 391 ~er~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~g~~~~~i~~~a~AL~~ip~~La~NaG~d~~--~v~~ 468 (529)
T CHL00093 391 KKLRLEDAINATKAAVEEGIVPGGGATLVHLSENLKTWAKNNLKEDELIGALIVARAILAPLKRIAENAGKNGS--VIIE 468 (529)
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHH--HHHH
Confidence 36899999999999999999999999999999999753 5679999999999999999999999999765 4444
Q ss_pred hh
Q 034571 76 SL 77 (91)
Q Consensus 76 ~~ 77 (91)
.+
T Consensus 469 ~l 470 (529)
T CHL00093 469 KV 470 (529)
T ss_pred HH
Confidence 43
No 5
>PTZ00114 Heat shock protein 60; Provisional
Probab=99.65 E-value=3.6e-16 Score=129.19 Aligned_cols=75 Identities=33% Similarity=0.358 Sum_probs=67.7
Q ss_pred CcchHHHHHHhHHHHHhhccccCchHHHHHhHHHhhhh------hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhh
Q 034571 1 MNITLDNARIAVKAALEEGIVPGGGVALLHASKVLSIC------SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFV 74 (91)
Q Consensus 1 ~K~RieDALnAtrAAveeGIVpGGG~aLl~a~~~L~~l------~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~ 74 (91)
++.+++||++++++|+++|+|||||+++++++..|++. .+++++|++++.+||+.|.+||++|+|+| +++.+
T Consensus 404 ~~r~i~Dal~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d--~~~v~ 481 (555)
T PTZ00114 404 KKDRIEDALNATRAAVEEGIVPGGGVALLRASKLLDKLEEDNELTPDQRTGVKIVRNALRLPTKQIAENAGVE--GAVVV 481 (555)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHH
Confidence 36899999999999999999999999999999999854 36799999999999999999999999998 56666
Q ss_pred hhh
Q 034571 75 SSL 77 (91)
Q Consensus 75 ~~~ 77 (91)
+.|
T Consensus 482 ~~l 484 (555)
T PTZ00114 482 EKI 484 (555)
T ss_pred HHH
Confidence 665
No 6
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=99.64 E-value=2.4e-16 Score=132.29 Aligned_cols=75 Identities=25% Similarity=0.280 Sum_probs=65.6
Q ss_pred CcchHHHHHHhHHHHHhhccccCchHHHHHhHHHhhhhh----hh-HHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhh
Q 034571 1 MNITLDNARIAVKAALEEGIVPGGGVALLHASKVLSICS----NL-KTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVS 75 (91)
Q Consensus 1 ~K~RieDALnAtrAAveeGIVpGGG~aLl~a~~~L~~l~----g~-q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~ 75 (91)
+|+|++||++++|+|+++|+|||||+++++++..|+++. +. |..|++++++||+.|.+||++|+|+|. ++.++
T Consensus 446 ~er~i~DAl~avk~ai~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~--~~vv~ 523 (600)
T PLN03167 446 KKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNG--SVVSE 523 (600)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCH--HHHHH
Confidence 478999999999999999999999999999999998752 33 678999999999999999999999975 44455
Q ss_pred hh
Q 034571 76 SL 77 (91)
Q Consensus 76 ~~ 77 (91)
.|
T Consensus 524 ~L 525 (600)
T PLN03167 524 KV 525 (600)
T ss_pred HH
Confidence 44
No 7
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=99.63 E-value=4.6e-16 Score=128.19 Aligned_cols=80 Identities=28% Similarity=0.285 Sum_probs=70.8
Q ss_pred CcchHHHHHHhHHHHHhhccccCchHHHHHhHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhh
Q 034571 1 MNITLDNARIAVKAALEEGIVPGGGVALLHASKVLSIC---SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVSSL 77 (91)
Q Consensus 1 ~K~RieDALnAtrAAveeGIVpGGG~aLl~a~~~L~~l---~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~~~ 77 (91)
++.+++||+|++++|+++|+|||||++++++++.|+++ .+.+++|++++.+||+.|.++|++|+|+|-. +.++.|
T Consensus 392 ~er~i~DAl~a~~~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~--~vl~~l 469 (545)
T PRK12852 392 KKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRINNDNADVQAGINIVLKALEAPIRQIAENAGVEGS--IVVGKI 469 (545)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHH
Confidence 46899999999999999999999999999999999865 4669999999999999999999999999754 567777
Q ss_pred heeee
Q 034571 78 IVVHR 82 (91)
Q Consensus 78 ~~~~~ 82 (91)
.-.|.
T Consensus 470 ~~~~~ 474 (545)
T PRK12852 470 LENKS 474 (545)
T ss_pred HhhcC
Confidence 65563
No 8
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=99.62 E-value=9.1e-16 Score=126.70 Aligned_cols=79 Identities=33% Similarity=0.269 Sum_probs=70.4
Q ss_pred CcchHHHHHHhHHHHHhhccccCchHHHHHhHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhh
Q 034571 1 MNITLDNARIAVKAALEEGIVPGGGVALLHASKVLSIC---SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVSSL 77 (91)
Q Consensus 1 ~K~RieDALnAtrAAveeGIVpGGG~aLl~a~~~L~~l---~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~~~ 77 (91)
++++++||++++++|+++|+|||||+++++++..|++. .+++++|++++.+||+.|.+||++|+|+|- ++.++.|
T Consensus 392 ~er~i~DAl~a~~~al~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~--~~vl~~l 469 (541)
T PRK12851 392 KKDRVDDALHATRAAVEEGIVPGGGVALLRAVKALDKLETANGDQRTGVEIVRRALEAPVRQIAENAGAEG--SVVVGKL 469 (541)
T ss_pred HHHHHHHHHHHHHHHHHcCcccCchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCH--HHHHHHH
Confidence 46899999999999999999999999999999999864 567999999999999999999999999974 5667777
Q ss_pred heee
Q 034571 78 IVVH 81 (91)
Q Consensus 78 ~~~~ 81 (91)
.-.|
T Consensus 470 ~~~~ 473 (541)
T PRK12851 470 REKP 473 (541)
T ss_pred HhhC
Confidence 6556
No 9
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=99.61 E-value=1.3e-15 Score=125.92 Aligned_cols=79 Identities=32% Similarity=0.319 Sum_probs=70.9
Q ss_pred CcchHHHHHHhHHHHHhhccccCchHHHHHhHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhh
Q 034571 1 MNITLDNARIAVKAALEEGIVPGGGVALLHASKVLSIC---SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVSSL 77 (91)
Q Consensus 1 ~K~RieDALnAtrAAveeGIVpGGG~aLl~a~~~L~~l---~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~~~ 77 (91)
++.+++||++++++|+++|+|||||++++++++.|+++ .+++++|++++.+||+.|.++|++|+|+| .+|.++.|
T Consensus 391 ~er~i~Dal~~vk~al~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d--~~~vl~~l 468 (542)
T PRK00013 391 KKDRVEDALHATRAAVEEGIVPGGGVALLRAAPALEALKGLNGDEATGINIVLRALEAPLRQIAENAGLE--GSVVVEKV 468 (542)
T ss_pred HHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHH
Confidence 36799999999999999999999999999999999864 56799999999999999999999999986 45667777
Q ss_pred heee
Q 034571 78 IVVH 81 (91)
Q Consensus 78 ~~~~ 81 (91)
.-.|
T Consensus 469 ~~~~ 472 (542)
T PRK00013 469 KNGK 472 (542)
T ss_pred Hhhc
Confidence 6666
No 10
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=99.60 E-value=1.6e-15 Score=124.60 Aligned_cols=80 Identities=33% Similarity=0.325 Sum_probs=71.6
Q ss_pred CcchHHHHHHhHHHHHhhccccCchHHHHHhHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhh
Q 034571 1 MNITLDNARIAVKAALEEGIVPGGGVALLHASKVLSIC---SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVSSL 77 (91)
Q Consensus 1 ~K~RieDALnAtrAAveeGIVpGGG~aLl~a~~~L~~l---~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~~~ 77 (91)
++.+++||++++++|+++|+|||||++++++++.|+++ .+++++|++++.+||+.|.++|++|+||| +++.++.+
T Consensus 389 ~~r~i~Dal~~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~Al~~ip~~La~NaG~d--~~~vi~~l 466 (520)
T cd03344 389 KKDRVEDALNATRAAVEEGIVPGGGVALLRASPALDKLKALNGDEKLGIEIVRRALEAPLRQIAENAGVD--GSVVVEKV 466 (520)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHH
Confidence 46789999999999999999999999999999999864 67799999999999999999999999986 45667777
Q ss_pred heeee
Q 034571 78 IVVHR 82 (91)
Q Consensus 78 ~~~~~ 82 (91)
.-.|.
T Consensus 467 ~~~~~ 471 (520)
T cd03344 467 LESPD 471 (520)
T ss_pred HhhcC
Confidence 66665
No 11
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=99.58 E-value=3.3e-15 Score=122.60 Aligned_cols=75 Identities=31% Similarity=0.315 Sum_probs=66.4
Q ss_pred CcchHHHHHHhHHHHHhhccccCchHHHHHhHHHhhh---hhhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhh
Q 034571 1 MNITLDNARIAVKAALEEGIVPGGGVALLHASKVLSI---CSNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVSSL 77 (91)
Q Consensus 1 ~K~RieDALnAtrAAveeGIVpGGG~aLl~a~~~L~~---l~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~~~ 77 (91)
++.+++||++++|+|+++|+|||||+++++++..|++ ..+++++|++++.+||+.|.++|++|+|+|.. +.++.|
T Consensus 390 ~er~i~Dal~~~r~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~--~v~~~l 467 (524)
T TIGR02348 390 KKLRVEDALNATRAAVEEGIVPGGGVALLRAAAALEGLKGDNEDEAIGIDIVKRALEAPLRQIAENAGKDGA--VVAEKV 467 (524)
T ss_pred HHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhCCCCHH--HHHHHH
Confidence 4679999999999999999999999999999999985 35679999999999999999999999999754 444444
No 12
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=99.58 E-value=3.5e-15 Score=123.43 Aligned_cols=79 Identities=32% Similarity=0.352 Sum_probs=70.0
Q ss_pred CcchHHHHHHhHHHHHhhccccCchHHHHHhHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhh
Q 034571 1 MNITLDNARIAVKAALEEGIVPGGGVALLHASKVLSIC---SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVSSL 77 (91)
Q Consensus 1 ~K~RieDALnAtrAAveeGIVpGGG~aLl~a~~~L~~l---~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~~~ 77 (91)
++.+++||++++++|+++|+|||||+++++++..|+++ ++++++|++++.+||+.|.++|++|+|+| +++.++.|
T Consensus 391 ~er~i~DAl~~~~~a~~~g~VpGGGa~e~~ls~~L~~~~~~~g~~~~~i~~~a~Al~~ip~~La~NaG~d--~~~vi~~L 468 (542)
T PRK12849 391 RKDRVEDALNATRAAVEEGIVPGGGVALLRAAKALDELAGLNGDQAAGVEIVRRALEAPLRQIAENAGLD--GSVVVAKV 468 (542)
T ss_pred HHHHHHHHHHHHHHHHHcCeecCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHH
Confidence 36799999999999999999999999999999999864 67799999999999999999999999975 55666666
Q ss_pred heee
Q 034571 78 IVVH 81 (91)
Q Consensus 78 ~~~~ 81 (91)
.--|
T Consensus 469 ~~~~ 472 (542)
T PRK12849 469 LELE 472 (542)
T ss_pred HhhC
Confidence 5545
No 13
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=99.56 E-value=6.2e-15 Score=119.19 Aligned_cols=79 Identities=24% Similarity=0.271 Sum_probs=71.3
Q ss_pred cchHHHHHHhHHHHHhhc-cccCchHHHHHhHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhh
Q 034571 2 NITLDNARIAVKAALEEG-IVPGGGVALLHASKVLSIC----SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVSS 76 (91)
Q Consensus 2 K~RieDALnAtrAAveeG-IVpGGG~aLl~a~~~L~~l----~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~~ 76 (91)
|.+++||++++++|+++| +|||||+++++++..|++. .+.+++|++++.+||+.|.++|++|+|+| +.+.++.
T Consensus 380 ~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d--~~~~~~~ 457 (517)
T cd03343 380 ERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLD--PIDTLVE 457 (517)
T ss_pred HHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHH
Confidence 678999999999999999 9999999999999999864 46699999999999999999999999987 5778888
Q ss_pred hheeee
Q 034571 77 LIVVHR 82 (91)
Q Consensus 77 ~~~~~~ 82 (91)
+.-.|.
T Consensus 458 l~~~h~ 463 (517)
T cd03343 458 LRAAHE 463 (517)
T ss_pred HHHHHH
Confidence 776664
No 14
>PRK14104 chaperonin GroEL; Provisional
Probab=99.56 E-value=6.5e-15 Score=121.95 Aligned_cols=76 Identities=32% Similarity=0.311 Sum_probs=67.0
Q ss_pred CcchHHHHHHhHHHHHhhccccCchHHHHHhHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhh
Q 034571 1 MNITLDNARIAVKAALEEGIVPGGGVALLHASKVLSIC---SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVSSL 77 (91)
Q Consensus 1 ~K~RieDALnAtrAAveeGIVpGGG~aLl~a~~~L~~l---~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~~~ 77 (91)
++.+++||+|++++|+++|+|||||+++++++..|+++ .+++++|++++.+||+.|.++|++|+|+|. ++.++.+
T Consensus 392 ~~r~i~Dal~a~~~ai~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~--~~v~~~l 469 (546)
T PRK14104 392 RKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKGIKTKNDDQKTGVEIVRKALSAPARQIAINAGEDG--SVIVGKI 469 (546)
T ss_pred HHHHHHHHHHHHHHHHHcCcCcCchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhhHHHHHHhCCCCH--HHHHHHH
Confidence 46899999999999999999999999999999999865 466999999999999999999999999864 4555555
Q ss_pred h
Q 034571 78 I 78 (91)
Q Consensus 78 ~ 78 (91)
.
T Consensus 470 ~ 470 (546)
T PRK14104 470 L 470 (546)
T ss_pred H
Confidence 3
No 15
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.56 E-value=7.4e-15 Score=119.73 Aligned_cols=80 Identities=29% Similarity=0.345 Sum_probs=71.3
Q ss_pred CcchHHHHHHhHHHHHhh-ccccCchHHHHHhHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhh
Q 034571 1 MNITLDNARIAVKAALEE-GIVPGGGVALLHASKVLSIC----SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVS 75 (91)
Q Consensus 1 ~K~RieDALnAtrAAvee-GIVpGGG~aLl~a~~~L~~l----~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~ 75 (91)
+|.+++||++++++|+++ |+|||||+++++++..|++. .+.+++|++++.+||+.|.++|++|+|+| +++.++
T Consensus 382 ~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d--~~~vl~ 459 (522)
T TIGR02345 382 AERSLHDAIMIVRRALKARKIVAGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFD--SIEILN 459 (522)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHH
Confidence 367999999999999996 99999999999999999864 46699999999999999999999999987 578888
Q ss_pred hhheeee
Q 034571 76 SLIVVHR 82 (91)
Q Consensus 76 ~~~~~~~ 82 (91)
-|.-.|.
T Consensus 460 ~l~~~h~ 466 (522)
T TIGR02345 460 KLRSRHA 466 (522)
T ss_pred HHHHHHH
Confidence 8766663
No 16
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.55 E-value=7.4e-15 Score=120.06 Aligned_cols=80 Identities=25% Similarity=0.269 Sum_probs=70.7
Q ss_pred CcchHHHHHHhHHHHHhhc-cccCchHHHHHhHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhh
Q 034571 1 MNITLDNARIAVKAALEEG-IVPGGGVALLHASKVLSIC----SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVS 75 (91)
Q Consensus 1 ~K~RieDALnAtrAAveeG-IVpGGG~aLl~a~~~L~~l----~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~ 75 (91)
+|.+++||++++++|+++| +|||||+++++++..|++. .+.+++|++++.+||+.|.++|++|+|+|. .+.++
T Consensus 384 ~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~--~~~l~ 461 (536)
T TIGR02340 384 MERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDS--TELVA 461 (536)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCH--HHHHH
Confidence 3679999999999999999 9999999999999999854 456999999999999999999999999874 66777
Q ss_pred hhheeee
Q 034571 76 SLIVVHR 82 (91)
Q Consensus 76 ~~~~~~~ 82 (91)
.|.-.|.
T Consensus 462 ~l~~~h~ 468 (536)
T TIGR02340 462 KLRAYHA 468 (536)
T ss_pred HHHHHHH
Confidence 7766553
No 17
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.54 E-value=1.1e-14 Score=117.47 Aligned_cols=79 Identities=22% Similarity=0.295 Sum_probs=70.9
Q ss_pred CcchHHHHHHhHHHHHhhc-cccCchHHHHHhHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhh
Q 034571 1 MNITLDNARIAVKAALEEG-IVPGGGVALLHASKVLSIC----SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVS 75 (91)
Q Consensus 1 ~K~RieDALnAtrAAveeG-IVpGGG~aLl~a~~~L~~l----~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~ 75 (91)
+|.+++||++++++|+++| +|||||+++++++..|++. .+.+++|++++.+||+.|.++|++|+|+| +++.++
T Consensus 332 ~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d--~~~~~~ 409 (472)
T cd03341 332 VERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLD--ATEVLS 409 (472)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHH
Confidence 3679999999999999999 9999999999999999864 46699999999999999999999999998 467777
Q ss_pred hhheee
Q 034571 76 SLIVVH 81 (91)
Q Consensus 76 ~~~~~~ 81 (91)
-|...|
T Consensus 410 ~l~~~h 415 (472)
T cd03341 410 ELYAAH 415 (472)
T ss_pred HHHHHH
Confidence 776666
No 18
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.53 E-value=1.5e-14 Score=117.18 Aligned_cols=78 Identities=18% Similarity=0.075 Sum_probs=69.9
Q ss_pred cchHHHHHHhHHHHHhhc-cccCchHHHHHhHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhh
Q 034571 2 NITLDNARIAVKAALEEG-IVPGGGVALLHASKVLSIC----SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVSS 76 (91)
Q Consensus 2 K~RieDALnAtrAAveeG-IVpGGG~aLl~a~~~L~~l----~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~~ 76 (91)
+.+++||++++++|+++| +|||||+++++++..|++. .+.+++|++++.+||+.|.++|++|+|+| +++.++.
T Consensus 346 er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d--~~~~l~~ 423 (484)
T cd03342 346 KDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLD--VQETLVK 423 (484)
T ss_pred HHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHH
Confidence 678999999999999999 9999999999999999864 46699999999999999999999999997 4577777
Q ss_pred hheee
Q 034571 77 LIVVH 81 (91)
Q Consensus 77 ~~~~~ 81 (91)
|..-|
T Consensus 424 l~~~h 428 (484)
T cd03342 424 LQDEY 428 (484)
T ss_pred HHHHH
Confidence 76555
No 19
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.53 E-value=1.6e-14 Score=118.34 Aligned_cols=78 Identities=18% Similarity=0.249 Sum_probs=70.1
Q ss_pred cchHHHHHHhHHHHHhhc-cccCchHHHHHhHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhh
Q 034571 2 NITLDNARIAVKAALEEG-IVPGGGVALLHASKVLSIC----SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVSS 76 (91)
Q Consensus 2 K~RieDALnAtrAAveeG-IVpGGG~aLl~a~~~L~~l----~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~~ 76 (91)
|.+++||++++++|+++| +|||||+++++++..|++. .+.+++|++++.+||+.|.++|++|+|+|. ++.++-
T Consensus 381 er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~--~~~~~~ 458 (531)
T TIGR02346 381 ERAIDDGVNVIKALVKDNRFLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNP--NEVIPK 458 (531)
T ss_pred HHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCH--HHHHHH
Confidence 679999999999999999 9999999999999999864 466999999999999999999999999975 677777
Q ss_pred hheee
Q 034571 77 LIVVH 81 (91)
Q Consensus 77 ~~~~~ 81 (91)
|...|
T Consensus 459 l~~~h 463 (531)
T TIGR02346 459 LYAAH 463 (531)
T ss_pred HHHHH
Confidence 76655
No 20
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=99.51 E-value=3.5e-14 Score=113.05 Aligned_cols=80 Identities=33% Similarity=0.358 Sum_probs=72.2
Q ss_pred CcchHHHHHHhHHHHHhh-ccccCchHHHHHhHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhh
Q 034571 1 MNITLDNARIAVKAALEE-GIVPGGGVALLHASKVLSIC----SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVS 75 (91)
Q Consensus 1 ~K~RieDALnAtrAAvee-GIVpGGG~aLl~a~~~L~~l----~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~ 75 (91)
+|.+++||++++++++++ |+|||||+++++++..|.+. .+.+++|++++.+||+.|.++|++|+|+| ..+.++
T Consensus 328 ~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d--~~~~~~ 405 (464)
T cd00309 328 AERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLD--PIEVVT 405 (464)
T ss_pred HHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHH
Confidence 367899999999999999 89999999999999999864 56699999999999999999999999998 477888
Q ss_pred hhheeee
Q 034571 76 SLIVVHR 82 (91)
Q Consensus 76 ~~~~~~~ 82 (91)
.|.-.|.
T Consensus 406 ~l~~~~~ 412 (464)
T cd00309 406 KLRAKHA 412 (464)
T ss_pred HHHHHhh
Confidence 8877664
No 21
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.51 E-value=2.7e-14 Score=115.63 Aligned_cols=79 Identities=16% Similarity=0.228 Sum_probs=69.8
Q ss_pred CcchHHHHHHhHHHHHhhc-cccCchHHHHHhHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhh
Q 034571 1 MNITLDNARIAVKAALEEG-IVPGGGVALLHASKVLSIC----SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVS 75 (91)
Q Consensus 1 ~K~RieDALnAtrAAveeG-IVpGGG~aLl~a~~~L~~l----~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~ 75 (91)
+|.+++||++++++|+++| +|||||+++++++..|++. .+.+++|++++.+||+.|.++|++|+|+| +++.++
T Consensus 378 ~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d--~~~~~~ 455 (515)
T cd03338 378 AERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLN--PISIVT 455 (515)
T ss_pred HHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHH
Confidence 3678999999999999999 9999999999999999864 46699999999999999999999999986 455677
Q ss_pred hhheee
Q 034571 76 SLIVVH 81 (91)
Q Consensus 76 ~~~~~~ 81 (91)
.|.-.|
T Consensus 456 ~l~~~h 461 (515)
T cd03338 456 ELRNRH 461 (515)
T ss_pred HHHHHH
Confidence 776555
No 22
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.51 E-value=3e-14 Score=116.08 Aligned_cols=78 Identities=19% Similarity=0.176 Sum_probs=71.0
Q ss_pred cchHHHHHHhHHHHHhhc-cccCchHHHHHhHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhh
Q 034571 2 NITLDNARIAVKAALEEG-IVPGGGVALLHASKVLSIC----SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVSS 76 (91)
Q Consensus 2 K~RieDALnAtrAAveeG-IVpGGG~aLl~a~~~L~~l----~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~~ 76 (91)
|.+++||++++++++++| +|||||+++++++..|++. .+.+++|++++.+||+.|.++|++|+|+|- ++.++.
T Consensus 390 er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~--~~~l~~ 467 (526)
T cd03339 390 KRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNP--IETLSE 467 (526)
T ss_pred HHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCH--HHHHHH
Confidence 678999999999999998 9999999999999999864 456999999999999999999999999875 778888
Q ss_pred hheee
Q 034571 77 LIVVH 81 (91)
Q Consensus 77 ~~~~~ 81 (91)
+...|
T Consensus 468 l~~~h 472 (526)
T cd03339 468 VKARQ 472 (526)
T ss_pred HHHHH
Confidence 87777
No 23
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=99.51 E-value=3.1e-14 Score=116.53 Aligned_cols=80 Identities=19% Similarity=0.217 Sum_probs=71.4
Q ss_pred CcchHHHHHHhHHHHHhhc-cccCchHHHHHhHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhh
Q 034571 1 MNITLDNARIAVKAALEEG-IVPGGGVALLHASKVLSIC----SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVS 75 (91)
Q Consensus 1 ~K~RieDALnAtrAAveeG-IVpGGG~aLl~a~~~L~~l----~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~ 75 (91)
+|.+++||++++++|+++| +|||||+++++++..|++. .+.+++|++++.+||+.|.++|++|+|+| +++.++
T Consensus 388 ~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d--~~~vl~ 465 (533)
T PTZ00212 388 AERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYD--SAELVS 465 (533)
T ss_pred HHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCC--HHHHHH
Confidence 3689999999999999997 9999999999999999854 46699999999999999999999999986 467788
Q ss_pred hhheeee
Q 034571 76 SLIVVHR 82 (91)
Q Consensus 76 ~~~~~~~ 82 (91)
.|...|.
T Consensus 466 ~l~~~h~ 472 (533)
T PTZ00212 466 KLRAEHY 472 (533)
T ss_pred HHHHHHH
Confidence 8876664
No 24
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.50 E-value=4.1e-14 Score=115.03 Aligned_cols=78 Identities=21% Similarity=0.237 Sum_probs=70.8
Q ss_pred cchHHHHHHhHHHHHhh-ccccCchHHHHHhHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhh
Q 034571 2 NITLDNARIAVKAALEE-GIVPGGGVALLHASKVLSIC----SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVSS 76 (91)
Q Consensus 2 K~RieDALnAtrAAvee-GIVpGGG~aLl~a~~~L~~l----~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~~ 76 (91)
|.+++||++++++++++ |+|||||+++++++..|++. .+.+++|++++.+||+.|.++|++|+|+| +++.++.
T Consensus 384 er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d--~~~~l~~ 461 (525)
T TIGR02344 384 ERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVN--VIRTLTE 461 (525)
T ss_pred HHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHH
Confidence 67899999999999977 89999999999999999864 46699999999999999999999999998 7788888
Q ss_pred hheee
Q 034571 77 LIVVH 81 (91)
Q Consensus 77 ~~~~~ 81 (91)
|.-.|
T Consensus 462 l~~~h 466 (525)
T TIGR02344 462 LRAKH 466 (525)
T ss_pred HHHHH
Confidence 87666
No 25
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.50 E-value=3.5e-14 Score=115.70 Aligned_cols=78 Identities=19% Similarity=0.245 Sum_probs=70.1
Q ss_pred cchHHHHHHhHHHHHhhc-cccCchHHHHHhHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhh
Q 034571 2 NITLDNARIAVKAALEEG-IVPGGGVALLHASKVLSIC----SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVSS 76 (91)
Q Consensus 2 K~RieDALnAtrAAveeG-IVpGGG~aLl~a~~~L~~l----~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~~ 76 (91)
|.+++||++++++|+++| +|||||+++++++..|++. .+.+++|++++.+||+.|.++|++|+|+|. ++.++-
T Consensus 377 er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~--~~~l~~ 454 (517)
T cd03336 377 ERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDS--AELVAQ 454 (517)
T ss_pred HHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCH--HHHHHH
Confidence 678999999999999998 9999999999999999864 466999999999999999999999999875 577777
Q ss_pred hheee
Q 034571 77 LIVVH 81 (91)
Q Consensus 77 ~~~~~ 81 (91)
|.-.|
T Consensus 455 l~~~h 459 (517)
T cd03336 455 LRAAH 459 (517)
T ss_pred HHHHH
Confidence 76666
No 26
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.50 E-value=4.1e-14 Score=115.33 Aligned_cols=78 Identities=24% Similarity=0.238 Sum_probs=69.9
Q ss_pred cchHHHHHHhHHHHHhhc-cccCchHHHHHhHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhh
Q 034571 2 NITLDNARIAVKAALEEG-IVPGGGVALLHASKVLSIC----SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVSS 76 (91)
Q Consensus 2 K~RieDALnAtrAAveeG-IVpGGG~aLl~a~~~L~~l----~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~~ 76 (91)
+.+++||++++++|+++| +|||||+++++++..|++. .+.+++|++++.+||+.|.++|+.|+|+| +++.++.
T Consensus 381 er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d--~~~~~~~ 458 (527)
T cd03335 381 ERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKD--ATELVAK 458 (527)
T ss_pred HHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHH
Confidence 678999999999999999 9999999999999999854 45699999999999999999999999987 4677777
Q ss_pred hheee
Q 034571 77 LIVVH 81 (91)
Q Consensus 77 ~~~~~ 81 (91)
|.-.|
T Consensus 459 l~~~h 463 (527)
T cd03335 459 LRAYH 463 (527)
T ss_pred HHHHH
Confidence 76655
No 27
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.49 E-value=4.1e-14 Score=116.37 Aligned_cols=78 Identities=19% Similarity=0.099 Sum_probs=70.0
Q ss_pred cchHHHHHHhHHHHHhhc-cccCchHHHHHhHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhh
Q 034571 2 NITLDNARIAVKAALEEG-IVPGGGVALLHASKVLSIC----SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVSS 76 (91)
Q Consensus 2 K~RieDALnAtrAAveeG-IVpGGG~aLl~a~~~L~~l----~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~~ 76 (91)
+.+++||++++++|+++| +|||||+++++++..|+++ .+.+++|++++.+||+.|.++|++|+|+|. ++.++.
T Consensus 389 er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~--~~vl~~ 466 (531)
T TIGR02347 389 KDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDA--QDTLVK 466 (531)
T ss_pred HHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCH--HHHHHH
Confidence 678999999999999999 9999999999999999864 466999999999999999999999999874 477777
Q ss_pred hheee
Q 034571 77 LIVVH 81 (91)
Q Consensus 77 ~~~~~ 81 (91)
|...|
T Consensus 467 l~~~~ 471 (531)
T TIGR02347 467 LEDEH 471 (531)
T ss_pred HHHHH
Confidence 76556
No 28
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=99.49 E-value=4.9e-14 Score=114.47 Aligned_cols=79 Identities=22% Similarity=0.241 Sum_probs=70.5
Q ss_pred cchHHHHHHhHHHHHhhc-cccCchHHHHHhHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhh
Q 034571 2 NITLDNARIAVKAALEEG-IVPGGGVALLHASKVLSIC----SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVSS 76 (91)
Q Consensus 2 K~RieDALnAtrAAveeG-IVpGGG~aLl~a~~~L~~l----~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~~ 76 (91)
|.+++||++++++|+++| +|||||+++++++..|++. .+.+++|++++.+||+.|.++|++|+|+|- ++.++.
T Consensus 383 ~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~--~~~l~~ 460 (519)
T TIGR02339 383 ERSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDP--IDALVE 460 (519)
T ss_pred HHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCH--HHHHHH
Confidence 678999999999999999 9999999999999999864 456999999999999999999999999875 677777
Q ss_pred hheeee
Q 034571 77 LIVVHR 82 (91)
Q Consensus 77 ~~~~~~ 82 (91)
|.-.|.
T Consensus 461 l~~~h~ 466 (519)
T TIGR02339 461 LRAKHE 466 (519)
T ss_pred HHHHHH
Confidence 765564
No 29
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.47 E-value=8.7e-14 Score=113.39 Aligned_cols=78 Identities=18% Similarity=0.275 Sum_probs=69.7
Q ss_pred cchHHHHHHhHHHHHhh-ccccCchHHHHHhHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhh
Q 034571 2 NITLDNARIAVKAALEE-GIVPGGGVALLHASKVLSIC----SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVSS 76 (91)
Q Consensus 2 K~RieDALnAtrAAvee-GIVpGGG~aLl~a~~~L~~l----~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~~ 76 (91)
+.+++||++++++|+++ |+|||||+++++++..|++. .+.+++|++++.+||+.|.++|++|+|+| ++|.++-
T Consensus 380 er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d--~~~~l~~ 457 (517)
T TIGR02342 380 ERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLN--PIDVVTE 457 (517)
T ss_pred HHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHH
Confidence 67899999999999996 99999999999999999864 46699999999999999999999999985 5677777
Q ss_pred hheee
Q 034571 77 LIVVH 81 (91)
Q Consensus 77 ~~~~~ 81 (91)
|.-.|
T Consensus 458 l~~~h 462 (517)
T TIGR02342 458 LRNRH 462 (517)
T ss_pred HHHHH
Confidence 76666
No 30
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.47 E-value=9e-14 Score=113.00 Aligned_cols=78 Identities=22% Similarity=0.306 Sum_probs=70.7
Q ss_pred cchHHHHHHhHHHHHhhc-cccCchHHHHHhHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhh
Q 034571 2 NITLDNARIAVKAALEEG-IVPGGGVALLHASKVLSIC----SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVSS 76 (91)
Q Consensus 2 K~RieDALnAtrAAveeG-IVpGGG~aLl~a~~~L~~l----~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~~ 76 (91)
|.+++||++++++|+++| +|||||+++++++..|++. .+.+++|++++.+||+.|.++|++|+|+| +++.++.
T Consensus 382 er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d--~~~~l~~ 459 (522)
T cd03340 382 ERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFD--ATDILNK 459 (522)
T ss_pred HHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCC--HHHHHHH
Confidence 678999999999999996 9999999999999999864 46699999999999999999999999998 5788888
Q ss_pred hheee
Q 034571 77 LIVVH 81 (91)
Q Consensus 77 ~~~~~ 81 (91)
|.-.|
T Consensus 460 l~~~h 464 (522)
T cd03340 460 LRQKH 464 (522)
T ss_pred HHHHH
Confidence 87666
No 31
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.45 E-value=1.6e-13 Score=112.35 Aligned_cols=78 Identities=23% Similarity=0.270 Sum_probs=69.5
Q ss_pred cchHHHHHHhHHHHHhh-ccccCchHHHHHhHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhh
Q 034571 2 NITLDNARIAVKAALEE-GIVPGGGVALLHASKVLSIC----SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVSS 76 (91)
Q Consensus 2 K~RieDALnAtrAAvee-GIVpGGG~aLl~a~~~L~~l----~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~~ 76 (91)
+.+++||++++++|+++ |+|||||+++++++..|++. .+.+++|++++.+||+.|.++|++|+|+|. +|.++.
T Consensus 378 er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~--~~~l~~ 455 (519)
T TIGR02341 378 ERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDS--AELVAQ 455 (519)
T ss_pred HHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCH--HHHHHH
Confidence 67899999999999987 89999999999999999864 466999999999999999999999999874 577777
Q ss_pred hheee
Q 034571 77 LIVVH 81 (91)
Q Consensus 77 ~~~~~ 81 (91)
|.-.|
T Consensus 456 l~~~h 460 (519)
T TIGR02341 456 LRAAH 460 (519)
T ss_pred HHHHH
Confidence 76666
No 32
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.45 E-value=1.7e-13 Score=112.36 Aligned_cols=79 Identities=19% Similarity=0.142 Sum_probs=70.0
Q ss_pred cchHHHHHHhHHHHHhh-ccccCchHHHHHhHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhh
Q 034571 2 NITLDNARIAVKAALEE-GIVPGGGVALLHASKVLSIC----SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVSS 76 (91)
Q Consensus 2 K~RieDALnAtrAAvee-GIVpGGG~aLl~a~~~L~~l----~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~~ 76 (91)
|.+++||++++++++++ |+|||||+++++++..|++. .+.+++|++++.+||+.|.++|++|+|+|. ++.++.
T Consensus 394 er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~--~~~l~~ 471 (532)
T TIGR02343 394 KRSIHDALCVVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDP--IGTLSD 471 (532)
T ss_pred HHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCH--HHHHHH
Confidence 67899999999999997 89999999999999999864 567999999999999999999999999984 577777
Q ss_pred hheeee
Q 034571 77 LIVVHR 82 (91)
Q Consensus 77 ~~~~~~ 82 (91)
+-..|.
T Consensus 472 l~~~h~ 477 (532)
T TIGR02343 472 LKSLQM 477 (532)
T ss_pred HHHHHH
Confidence 765563
No 33
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.45 E-value=2e-13 Score=110.36 Aligned_cols=78 Identities=22% Similarity=0.227 Sum_probs=70.8
Q ss_pred cchHHHHHHhHHHHHhh-ccccCchHHHHHhHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhh
Q 034571 2 NITLDNARIAVKAALEE-GIVPGGGVALLHASKVLSIC----SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVSS 76 (91)
Q Consensus 2 K~RieDALnAtrAAvee-GIVpGGG~aLl~a~~~L~~l----~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~~ 76 (91)
|..++||++++++++++ |+|||||+++++++..|++. .+.+++|++++.+||+.|.+++++|+|+| ++|.++.
T Consensus 343 er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d--~~~~l~~ 420 (480)
T cd03337 343 ERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGAN--VIRTLTE 420 (480)
T ss_pred HHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHH
Confidence 56899999999999999 89999999999999999853 46699999999999999999999999998 7888888
Q ss_pred hheee
Q 034571 77 LIVVH 81 (91)
Q Consensus 77 ~~~~~ 81 (91)
|.-.|
T Consensus 421 l~~~h 425 (480)
T cd03337 421 LRAKH 425 (480)
T ss_pred HHHHH
Confidence 87666
No 34
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=99.30 E-value=3.7e-12 Score=99.47 Aligned_cols=78 Identities=28% Similarity=0.345 Sum_probs=68.9
Q ss_pred cchHHHHHHhHHHHHh-hccccCchHHHHHhHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhh
Q 034571 2 NITLDNARIAVKAALE-EGIVPGGGVALLHASKVLSIC----SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVSS 76 (91)
Q Consensus 2 K~RieDALnAtrAAve-eGIVpGGG~aLl~a~~~L~~l----~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~~ 76 (91)
|.+++||+++.+++++ .|+|||||+++++++..|.+. .+.++.+++++.+||+.|.++++.|+|+| +.++++.
T Consensus 348 ~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~--~~~~~~~ 425 (485)
T PF00118_consen 348 ERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLSGKEQLAIEAFADALESIPKTLAQNAGLD--SSEVISK 425 (485)
T ss_dssp HHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTTST--HHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcccCchhhhHHHHHHHHHHhhhhhhhccCCC--ceeeehh
Confidence 6789999999999999 889999999999999999643 34699999999999999999999999995 4677777
Q ss_pred hheee
Q 034571 77 LIVVH 81 (91)
Q Consensus 77 ~~~~~ 81 (91)
+.-.|
T Consensus 426 l~~~h 430 (485)
T PF00118_consen 426 LKSFH 430 (485)
T ss_dssp HHHHH
T ss_pred hHhhh
Confidence 76655
No 35
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0001 Score=62.88 Aligned_cols=67 Identities=27% Similarity=0.323 Sum_probs=59.9
Q ss_pred HHHHHHhHHHHHh-hccccCchHHHHHhHHHhhh----hhhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchh
Q 034571 5 LDNARIAVKAALE-EGIVPGGGVALLHASKVLSI----CSNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSI 71 (91)
Q Consensus 5 ieDALnAtrAAve-eGIVpGGG~aLl~a~~~L~~----l~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~ 71 (91)
+-||+..+|-|++ .-+|+|||......++.|.+ +.|-++.=++++.+||+.-=||+..|||||-|+|
T Consensus 389 lHDAImIVrralkn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~i 460 (543)
T KOG0361|consen 389 LHDAIMIVRRALKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNI 460 (543)
T ss_pred hhhHHHHHHHHhccCcEeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHH
Confidence 5699999999998 56889999999999999985 3466889999999999999999999999998876
No 36
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.002 Score=55.30 Aligned_cols=69 Identities=17% Similarity=0.101 Sum_probs=60.8
Q ss_pred CcchHHHHHHhHHHHHhhc-cccCchHHHHHhHHHhhh----hhhhHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 034571 1 MNITLDNARIAVKAALEEG-IVPGGGVALLHASKVLSI----CSNLKTLISKLVLRFYRMLLRFLFFFFPFSLT 69 (91)
Q Consensus 1 ~K~RieDALnAtrAAveeG-IVpGGG~aLl~a~~~L~~----l~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~ 69 (91)
+||-+.|+|.|+.-++|.+ ++||+|...+.+...|.. .+|...+|+++..+|+-.--..++.|+|||..
T Consensus 379 ikdairdglrav~ntl~d~~~i~Gaga~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~q 452 (520)
T KOG0359|consen 379 IKDAIRDGLRAVKNTLEDKCGIPGAGAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQ 452 (520)
T ss_pred HHHHHhhHHHHHHHHhhhcccccCchHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchH
Confidence 4788899999999999966 579999999988887763 56789999999999999999999999999964
No 37
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0018 Score=55.35 Aligned_cols=75 Identities=16% Similarity=0.188 Sum_probs=63.7
Q ss_pred HHHHHHhHHHHHh-hccccCchHHHHHhHHHhhh----hhhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhe
Q 034571 5 LDNARIAVKAALE-EGIVPGGGVALLHASKVLSI----CSNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVSSLIV 79 (91)
Q Consensus 5 ieDALnAtrAAve-eGIVpGGG~aLl~a~~~L~~----l~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~~~~~ 79 (91)
+.|||...|+-++ ++.+||||...+..+..|.. ++|++.|=+.....||+.-=..+++|+|. ..|+.|+-|--
T Consensus 400 lhDALCVirCLvk~r~li~GGGapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGL--npI~~VtELRn 477 (534)
T KOG0358|consen 400 LHDALCVIRCLVKKRALIAGGGAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGL--NPIATVTELRN 477 (534)
T ss_pred hhhhhHHHHhhhhccceecCCCCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCC--ChhhHHHHHHH
Confidence 5799999999997 68899999999999888873 57889999999999999988999999995 46777776644
Q ss_pred ee
Q 034571 80 VH 81 (91)
Q Consensus 80 ~~ 81 (91)
-|
T Consensus 478 ~h 479 (534)
T KOG0358|consen 478 RH 479 (534)
T ss_pred HH
Confidence 33
No 38
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.017 Score=49.37 Aligned_cols=77 Identities=21% Similarity=0.236 Sum_probs=63.0
Q ss_pred HHHHHHhHHHHHh-hccccCchHHHHHhHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhe
Q 034571 5 LDNARIAVKAALE-EGIVPGGGVALLHASKVLSIC----SNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVSSLIV 79 (91)
Q Consensus 5 ieDALnAtrAAve-eGIVpGGG~aLl~a~~~L~~l----~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~~~~~ 79 (91)
+-|||...-.-++ ..+|.|||++..-.+..+++. .|-++..|++..+||+.-=.-|+-|+||| |-|.|++|--
T Consensus 385 lHDALcVLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~d--saelva~Lra 462 (527)
T KOG0363|consen 385 LHDALCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYD--SAELVAQLRA 462 (527)
T ss_pred HHHHHHHHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCC--HHHHHHHHHH
Confidence 5688887666665 568899999999888888853 46699999999999999889999999998 5677888876
Q ss_pred eeee
Q 034571 80 VHRT 83 (91)
Q Consensus 80 ~~~~ 83 (91)
-|-+
T Consensus 463 ~h~~ 466 (527)
T KOG0363|consen 463 EHYN 466 (527)
T ss_pred Hhhc
Confidence 6643
No 39
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.011 Score=51.20 Aligned_cols=76 Identities=25% Similarity=0.320 Sum_probs=64.9
Q ss_pred HHHHHHhHHHHHhhc-cccCchHHHHHhHHHhhh----hhhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhe
Q 034571 5 LDNARIAVKAALEEG-IVPGGGVALLHASKVLSI----CSNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVSSLIV 79 (91)
Q Consensus 5 ieDALnAtrAAveeG-IVpGGG~aLl~a~~~L~~----l~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~~~~~ 79 (91)
++|++|..++-++.+ ++||.|...++.++.+.+ +.|..++.+....+|++.-=+.+++|+|.+.+ |.++-|.-
T Consensus 387 VddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~--evia~ly~ 464 (537)
T KOG0362|consen 387 VDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVT--EVIAKLYA 464 (537)
T ss_pred HHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHH--HHHHHHHH
Confidence 577888888888754 899999999999999975 56889999999999999977999999998876 45777777
Q ss_pred eee
Q 034571 80 VHR 82 (91)
Q Consensus 80 ~~~ 82 (91)
+|.
T Consensus 465 ~h~ 467 (537)
T KOG0362|consen 465 VHQ 467 (537)
T ss_pred hhc
Confidence 775
No 40
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.016 Score=48.55 Aligned_cols=74 Identities=16% Similarity=0.176 Sum_probs=61.3
Q ss_pred cchHHHHHHhHHHHHh-hccccCchHHHHHhHHHhhh----hhhhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhh
Q 034571 2 NITLDNARIAVKAALE-EGIVPGGGVALLHASKVLSI----CSNLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVSS 76 (91)
Q Consensus 2 K~RieDALnAtrAAve-eGIVpGGG~aLl~a~~~L~~----l~g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~~ 76 (91)
|.-+-|||...|.-++ ..||-|||.+.+.|+-.+++ +.|.++|.+....+||+.==+-+++|-|.+ .|+..|.
T Consensus 258 krslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaensgl~--pi~~ls~ 335 (400)
T KOG0357|consen 258 KRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAENSGLD--PIETLSD 335 (400)
T ss_pred HHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhccCCC--chhhhhH
Confidence 4457799999999887 67999999999999877764 567899999999999998778899999965 4666654
Q ss_pred h
Q 034571 77 L 77 (91)
Q Consensus 77 ~ 77 (91)
+
T Consensus 336 ~ 336 (400)
T KOG0357|consen 336 V 336 (400)
T ss_pred h
Confidence 4
No 41
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=82.35 E-value=4.1 Score=35.75 Aligned_cols=80 Identities=25% Similarity=0.222 Sum_probs=57.1
Q ss_pred CcchHHHHHHhHHHHHhhc-cccCchHHHHHhHHHhhhhh---hh-HHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhh
Q 034571 1 MNITLDNARIAVKAALEEG-IVPGGGVALLHASKVLSICS---NL-KTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVS 75 (91)
Q Consensus 1 ~K~RieDALnAtrAAveeG-IVpGGG~aLl~a~~~L~~l~---g~-q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~ 75 (91)
|+.-..|||...+.-+|++ +|||||+..-..+-.|+... ++ ++..+.=+.+||-.-.+.++-|+.-|-| |.|.
T Consensus 390 mers~hdaL~VlkrtLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dst--elvt 467 (545)
T KOG0360|consen 390 MERSLHDALCVLKRTLESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDST--ELVT 467 (545)
T ss_pred hccchhhHHHHHHHHhccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccc--cccc
Confidence 3456789999999999988 56999999988888887532 22 4444443444888778899999987755 4455
Q ss_pred hhheeee
Q 034571 76 SLIVVHR 82 (91)
Q Consensus 76 ~~~~~~~ 82 (91)
-+--.|-
T Consensus 468 ~lra~Hs 474 (545)
T KOG0360|consen 468 KLRAYHS 474 (545)
T ss_pred cccCCch
Confidence 5555553
No 42
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=77.53 E-value=2.6 Score=36.78 Aligned_cols=83 Identities=19% Similarity=0.193 Sum_probs=61.0
Q ss_pred HHHHHHhHHHHHh-hccccCchHHHHHhHHHhhh-hh---hhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhhe
Q 034571 5 LDNARIAVKAALE-EGIVPGGGVALLHASKVLSI-CS---NLKTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVSSLIV 79 (91)
Q Consensus 5 ieDALnAtrAAve-eGIVpGGG~aLl~a~~~L~~-l~---g~q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~~~~~ 79 (91)
+.||....|.-+- =-++||||++....+..|.+ .+ |-++---..+.-|++.=.+.++.|.|= ..|+-...+.-
T Consensus 387 lqda~~varn~ii~PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGa--n~Ir~lTalr~ 464 (527)
T KOG0364|consen 387 LQDAMGVARNVIINPKLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGA--NPIRALTALRA 464 (527)
T ss_pred hhhHHHHHHHhccCCcccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCc--cHHHHHHHHHH
Confidence 5788888888776 56899999999999999985 22 324444456777887655999999997 55777777777
Q ss_pred eeeeeeeeec
Q 034571 80 VHRTVQFSLS 89 (91)
Q Consensus 80 ~~~~~~~~~~ 89 (91)
-|..-|+.++
T Consensus 465 kh~~G~~~~g 474 (527)
T KOG0364|consen 465 KHKEGQRVWG 474 (527)
T ss_pred HhcCcceeec
Confidence 6766555443
No 43
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=37.59 E-value=66 Score=20.29 Aligned_cols=28 Identities=7% Similarity=0.055 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhcCCCCcchhhhhhh
Q 034571 49 VLRFYRMLLRFLFFFFPFSLTSIEFVSS 76 (91)
Q Consensus 49 V~rAL~~Pl~QI~~n~~~~~~~~~~~~~ 76 (91)
...-||..+.||..+.||+-.+-.-+.+
T Consensus 4 ~~~ll~~~Vaqil~~~Gf~~~~~sale~ 31 (77)
T smart00576 4 AFALLRIAVAQILESAGFDSFQESALET 31 (77)
T ss_pred HHHHHHHHHHHHHHHcCccccCHHHHHH
Confidence 3566888899999999999877554443
No 44
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=37.46 E-value=69 Score=19.92 Aligned_cols=26 Identities=12% Similarity=0.030 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCcchhhh
Q 034571 48 LVLRFYRMLLRFLFFFFPFSLTSIEF 73 (91)
Q Consensus 48 IV~rAL~~Pl~QI~~n~~~~~~~~~~ 73 (91)
...+.|+.=+.||..+.||+-.+-..
T Consensus 3 ~~~~~l~~~va~il~~~GF~~~~~~a 28 (77)
T PF07524_consen 3 FARSLLRRSVAQILKHAGFDSASPSA 28 (77)
T ss_pred HHHHHHHHHHHHHHHHcCccccCHHH
Confidence 45678999999999999998665443
No 45
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=31.72 E-value=1.4e+02 Score=22.51 Aligned_cols=40 Identities=15% Similarity=0.102 Sum_probs=31.2
Q ss_pred chHHHHHhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Q 034571 24 GGVALLHASKVLSICSNLKTLISKLVLRFYRMLLRFLFFF 63 (91)
Q Consensus 24 GG~aLl~a~~~L~~l~g~q~~Gi~IV~rAL~~Pl~QI~~n 63 (91)
||.++-..+..|.++......=++-+.+.+..||.+.+.+
T Consensus 61 gg~~l~kF~~~l~ei~~~~~~L~~q~~~~l~~pL~~F~k~ 100 (202)
T cd07606 61 GGPVMTKFTSALREIGSYKEVLRSQVEHMLNDRLAQFADT 100 (202)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888776665555677888999999998853
No 46
>KOG3954 consensus Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=29.61 E-value=23 Score=29.50 Aligned_cols=20 Identities=40% Similarity=0.526 Sum_probs=16.8
Q ss_pred hHHHHHHhHHHHHhhccccC
Q 034571 4 TLDNARIAVKAALEEGIVPG 23 (91)
Q Consensus 4 RieDALnAtrAAveeGIVpG 23 (91)
.+--|.-|+||||+.|+||-
T Consensus 243 klgaavGAtRaaVDaGyvpN 262 (336)
T KOG3954|consen 243 KLGAAVGATRAAVDAGYVPN 262 (336)
T ss_pred HhchhhchhhhhhccCcCCC
Confidence 44568899999999999984
No 47
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=28.48 E-value=29 Score=21.36 Aligned_cols=46 Identities=17% Similarity=0.140 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhheeeeeeeeee
Q 034571 42 KTLISKLVLRFYRMLLRFLFFFFPFSLTSIEFVSSLIVVHRTVQFSL 88 (91)
Q Consensus 42 q~~Gi~IV~rAL~~Pl~QI~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (91)
++++ +...+--+.|+++|+.+.+.+...+.-.-...+-|+-|+|..
T Consensus 16 ~~V~-~~Ll~~G~ltl~~i~~~t~l~~~~Vk~~L~~LiQh~~v~y~~ 61 (62)
T PF08221_consen 16 AKVG-EVLLSRGRLTLREIVRRTGLSPKQVKKALVVLIQHNLVQYFE 61 (62)
T ss_dssp HHHH-HHHHHC-SEEHHHHHHHHT--HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHH-HHHHHcCCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCeeeec
Confidence 4555 444555578999999999988777776666666788888853
No 48
>PHA02682 ORF080 virion core protein; Provisional
Probab=26.10 E-value=37 Score=27.43 Aligned_cols=24 Identities=38% Similarity=0.760 Sum_probs=19.1
Q ss_pred hHHHHHHhHHHHHh--hccccCchHH
Q 034571 4 TLDNARIAVKAALE--EGIVPGGGVA 27 (91)
Q Consensus 4 RieDALnAtrAAve--eGIVpGGG~a 27 (91)
-||||-++|++|++ +.++-|||++
T Consensus 237 DIE~AKstTq~AIdDLRrLl~~~~v~ 262 (280)
T PHA02682 237 DIENAKSTTQAAIDDLRRLLTGGGVA 262 (280)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCcc
Confidence 48999999999998 4666677654
No 49
>PF08299 Bac_DnaA_C: Bacterial dnaA protein helix-turn-helix; InterPro: IPR013159 This entry represents the C-terminal domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; GO: 0005524 ATP binding, 0043565 sequence-specific DNA binding, 0006270 DNA-dependent DNA replication initiation, 0006275 regulation of DNA replication; PDB: 2HCB_B 3R8F_C 1L8Q_A 3PVP_B 3PVV_A 1J1V_A.
Probab=24.56 E-value=88 Score=19.47 Aligned_cols=31 Identities=10% Similarity=0.082 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCC-CCcchh
Q 034571 41 LKTLISKLVLRFYRMLLRFLFFFFP-FSLTSI 71 (91)
Q Consensus 41 ~q~~Gi~IV~rAL~~Pl~QI~~n~~-~~~~~~ 71 (91)
..+..+-..++-+..|+.+|...|| -|-+++
T Consensus 32 aR~va~yL~r~~~~~sl~~Ig~~fg~rdHstV 63 (70)
T PF08299_consen 32 ARQVAMYLARELTGLSLSEIGRYFGGRDHSTV 63 (70)
T ss_dssp HHHHHHHHHHHHS---HHHHHHHCTSSTHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHH
Confidence 3667788899999999999999999 988765
No 50
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=24.12 E-value=40 Score=24.53 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=17.2
Q ss_pred HHHHHhhccccCchHHHHHhH
Q 034571 12 VKAALEEGIVPGGGVALLHAS 32 (91)
Q Consensus 12 trAAveeGIVpGGG~aLl~a~ 32 (91)
++..+-.|++.|||.+|+...
T Consensus 9 ~K~~~~G~~ii~~G~~l~~y~ 29 (128)
T PF07960_consen 9 AKMLVAGAVIIGGGPALVKYT 29 (128)
T ss_pred HHHHHhcceeEeechHHheec
Confidence 567778899999999998643
No 51
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=22.53 E-value=38 Score=30.32 Aligned_cols=36 Identities=33% Similarity=0.363 Sum_probs=31.3
Q ss_pred chHHHHHHhHHHHHhhccccCchHHHHHhHHHhhhh
Q 034571 3 ITLDNARIAVKAALEEGIVPGGGVALLHASKVLSIC 38 (91)
Q Consensus 3 ~RieDALnAtrAAveeGIVpGGG~aLl~a~~~L~~l 38 (91)
..++||+.+.|+|-+-=||+|||+-+-.+..+|..+
T Consensus 217 ~eL~~A~~lik~ak~PlIvaGGGv~YS~A~~~L~af 252 (617)
T COG3962 217 RELADAAALIKSAKKPLIVAGGGVLYSGAREALRAF 252 (617)
T ss_pred HHHHHHHHHHHhcCCCEEEecCceeechHHHHHHHH
Confidence 468899999999999999999999888888877643
No 52
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=22.04 E-value=1.5e+02 Score=23.28 Aligned_cols=43 Identities=14% Similarity=0.057 Sum_probs=35.6
Q ss_pred CchHHHHHhHHHhhh-hhhh--HHHHHHHHHHHHHHHHHHHHhcCC
Q 034571 23 GGGVALLHASKVLSI-CSNL--KTLISKLVLRFYRMLLRFLFFFFP 65 (91)
Q Consensus 23 GGG~aLl~a~~~L~~-l~g~--q~~Gi~IV~rAL~~Pl~QI~~n~~ 65 (91)
|-|.+-..|.+-++. .+++ ++-++++.++|+.+-=+.++.|+|
T Consensus 131 ~hGy~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~El~kRlvin~~ 176 (200)
T KOG0177|consen 131 AHGYGSYFCLSILDRYYKPDMTIEEALDLMKKCVLELKKRLVINLP 176 (200)
T ss_pred cccchhhhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcccCCC
Confidence 556777788888885 4554 889999999999999999999985
No 53
>KOG3495 consensus Mitochondrial F1F0-ATP synthase, subunit epsilon/ATP15 [Energy production and conversion]
Probab=21.39 E-value=1.7e+02 Score=18.29 Aligned_cols=24 Identities=13% Similarity=0.121 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Q 034571 42 KTLISKLVLRFYRMLLRFLFFFFP 65 (91)
Q Consensus 42 q~~Gi~IV~rAL~~Pl~QI~~n~~ 65 (91)
.++-.++|++||+.+++-=+.+-|
T Consensus 15 s~I~A~vvR~~LK~e~ka~a~k~~ 38 (50)
T KOG3495|consen 15 SQIAAQVVRQALKTELKAEALKRP 38 (50)
T ss_pred HHHHHHHHHHHHhHHHHHHHhhCC
Confidence 677889999999999987777665
No 54
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=21.03 E-value=1e+02 Score=14.63 Aligned_cols=20 Identities=35% Similarity=0.400 Sum_probs=13.9
Q ss_pred chHHHHHHhHHHHHhhcccc
Q 034571 3 ITLDNARIAVKAALEEGIVP 22 (91)
Q Consensus 3 ~RieDALnAtrAAveeGIVp 22 (91)
.++++|...-+.-.++|+.|
T Consensus 14 ~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 14 GRVEEALELFKEMLERGIEP 33 (35)
T ss_pred CCHHHHHHHHHHHHHcCCCC
Confidence 45677777777777777766
No 55
>PLN02842 nucleotide kinase
Probab=20.81 E-value=56 Score=28.28 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=16.2
Q ss_pred cchHHHHHHhHHHHHhhcc
Q 034571 2 NITLDNARIAVKAALEEGI 20 (91)
Q Consensus 2 K~RieDALnAtrAAveeGI 20 (91)
|-=|+||..||++|+++|.
T Consensus 241 ~~~~~~~~~a~~~a~~~g~ 259 (505)
T PLN02842 241 AYFYDDVLQATQRAVNDGR 259 (505)
T ss_pred HHHHHHHHHHHHHHHhCCc
Confidence 3458999999999999875
No 56
>COG5521 Predicted integral membrane protein [Function unknown]
Probab=20.65 E-value=68 Score=26.24 Aligned_cols=60 Identities=30% Similarity=0.227 Sum_probs=36.7
Q ss_pred cccCchHHHHHhHHHhhhhh--hhHHHHHHHHHHHHHHH--HHHHHhcCCCCcchhhhhhhhhee
Q 034571 20 IVPGGGVALLHASKVLSICS--NLKTLISKLVLRFYRML--LRFLFFFFPFSLTSIEFVSSLIVV 80 (91)
Q Consensus 20 IVpGGG~aLl~a~~~L~~l~--g~q~~Gi~IV~rAL~~P--l~QI~~n~~~~~~~~~~~~~~~~~ 80 (91)
+|.|||+-+++.-+ ...+- ..=+-+..+..+||-.| +.-+.-.|+||+|-|--|-|+-+|
T Consensus 193 ivagg~sffL~iTK-rSrlfsiasFkE~~~l~lnclalP~laa~algff~qd~ttim~vqs~g~v 256 (275)
T COG5521 193 IVAGGASFFLWITK-RSRLFSIASFKEAASLALNCLALPALAAAALGFFHQDLTTIMMVQSCGVV 256 (275)
T ss_pred HHHhhhhheeeeeh-hhhhhhHHhHHHHHHHHHHhhhhHHHHHHHHHHHhhcHHHHHHHHHHHHH
Confidence 56777777775432 22211 11222334556666666 567888999999998877776443
No 57
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=20.29 E-value=1.3e+02 Score=22.13 Aligned_cols=18 Identities=33% Similarity=0.366 Sum_probs=13.3
Q ss_pred HhhccccCchHH---HHHhHH
Q 034571 16 LEEGIVPGGGVA---LLHASK 33 (91)
Q Consensus 16 veeGIVpGGG~a---Ll~a~~ 33 (91)
.+=+||||||.. +-...+
T Consensus 25 ~~v~iV~GGG~~A~~~r~~~~ 45 (203)
T cd04240 25 GGVVIVPGGGPFADVVRRYQE 45 (203)
T ss_pred CCEEEEcCCcHHHHHHHHHHH
Confidence 567899999988 555444
Done!