Query 034574
Match_columns 90
No_of_seqs 102 out of 261
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 04:16:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03151 TPT: Triose-phosphate 98.9 2E-09 4.3E-14 72.6 3.6 43 7-49 111-153 (153)
2 KOG1441 Glucose-6-phosphate/ph 98.6 2E-09 4.3E-14 85.1 -2.7 49 7-55 265-313 (316)
3 KOG1443 Predicted integral mem 98.6 6.1E-08 1.3E-12 77.9 4.8 42 6-47 272-313 (349)
4 PTZ00343 triose or hexose phos 98.4 2.5E-07 5.5E-12 72.1 4.4 45 7-51 306-350 (350)
5 TIGR00817 tpt Tpt phosphate/ph 98.3 2.3E-07 4.9E-12 69.6 1.8 47 7-53 251-297 (302)
6 COG2076 EmrE Membrane transpor 98.0 1.2E-05 2.6E-10 55.5 4.3 39 12-50 66-104 (106)
7 PRK09541 emrE multidrug efflux 98.0 1.4E-05 3.1E-10 54.6 4.6 40 12-51 66-105 (110)
8 PRK10452 multidrug efflux syst 97.9 1.2E-05 2.6E-10 56.0 3.8 46 5-51 60-105 (120)
9 PRK11431 multidrug efflux syst 97.9 1.9E-05 4.2E-10 53.7 4.2 39 12-50 65-103 (105)
10 PRK10650 multidrug efflux syst 97.8 2.7E-05 5.8E-10 53.4 4.4 38 12-49 71-108 (109)
11 PF08449 UAA: UAA transporter 97.8 2.3E-05 4.9E-10 59.5 4.4 48 7-54 255-302 (303)
12 PRK15051 4-amino-4-deoxy-L-ara 97.8 4.1E-05 8.9E-10 51.8 4.2 37 12-48 72-108 (111)
13 PF13536 EmrE: Multidrug resis 97.4 0.00026 5.6E-09 46.8 4.2 39 14-52 71-109 (113)
14 PRK02971 4-amino-4-deoxy-L-ara 97.3 0.00044 9.6E-09 48.2 4.5 33 17-49 88-122 (129)
15 PF00892 EamA: EamA-like trans 97.2 0.0008 1.7E-08 42.5 4.8 40 9-48 86-125 (126)
16 PLN00411 nodulin MtN21 family 97.0 0.0016 3.5E-08 51.7 5.5 43 12-54 291-333 (358)
17 TIGR00803 nst UDP-galactose tr 96.7 0.0013 2.9E-08 47.5 3.0 43 5-47 180-222 (222)
18 PRK10532 threonine and homoser 96.7 0.0038 8.2E-08 47.1 5.3 44 8-51 240-283 (293)
19 COG2510 Predicted membrane pro 96.7 0.001 2.3E-08 48.0 2.1 35 14-48 104-138 (140)
20 KOG1444 Nucleotide-sugar trans 96.7 0.0018 4E-08 51.8 3.7 48 7-55 258-306 (314)
21 PRK11272 putative DMT superfam 96.6 0.0038 8.2E-08 47.0 4.6 43 10-52 246-288 (292)
22 TIGR03340 phn_DUF6 phosphonate 96.4 0.0048 1E-07 46.0 3.9 33 14-46 248-280 (281)
23 PF06027 DUF914: Eukaryotic pr 96.3 0.0027 5.7E-08 50.7 2.5 39 14-52 270-308 (334)
24 PF00893 Multi_Drug_Res: Small 96.3 0.0054 1.2E-07 40.1 3.3 32 8-40 62-93 (93)
25 PRK11689 aromatic amino acid e 96.1 0.0092 2E-07 45.0 4.4 39 11-49 249-287 (295)
26 PRK15430 putative chlorampheni 96.1 0.023 5E-07 42.9 6.5 43 10-52 246-288 (296)
27 TIGR03340 phn_DUF6 phosphonate 96.0 0.009 2E-07 44.6 3.9 37 13-49 99-135 (281)
28 TIGR00688 rarD rarD protein. T 96.0 0.011 2.3E-07 43.4 4.0 36 13-48 106-141 (256)
29 PRK11453 O-acetylserine/cystei 95.9 0.012 2.6E-07 44.4 4.0 39 13-51 251-289 (299)
30 TIGR00950 2A78 Carboxylate/Ami 95.8 0.013 2.8E-07 42.2 3.8 36 14-49 84-119 (260)
31 TIGR00950 2A78 Carboxylate/Ami 95.8 0.016 3.6E-07 41.7 4.2 39 7-45 222-260 (260)
32 PRK15430 putative chlorampheni 95.7 0.015 3.3E-07 43.9 4.1 36 13-48 109-144 (296)
33 TIGR00776 RhaT RhaT L-rhamnose 95.5 0.015 3.2E-07 44.4 3.3 44 8-51 243-290 (290)
34 PF04142 Nuc_sug_transp: Nucle 95.0 0.024 5.1E-07 42.9 3.1 45 8-52 48-92 (244)
35 COG0697 RhaT Permeases of the 95.0 0.064 1.4E-06 38.2 5.0 40 11-50 249-288 (292)
36 PF06027 DUF914: Eukaryotic pr 95.0 0.016 3.4E-07 46.3 2.1 38 15-52 117-154 (334)
37 PRK11689 aromatic amino acid e 94.9 0.032 6.9E-07 42.1 3.6 36 14-49 102-137 (295)
38 PRK11453 O-acetylserine/cystei 94.9 0.039 8.4E-07 41.6 3.9 35 15-49 98-132 (299)
39 TIGR00817 tpt Tpt phosphate/ph 94.9 0.039 8.4E-07 41.4 3.9 40 8-47 93-135 (302)
40 PTZ00343 triose or hexose phos 94.5 0.051 1.1E-06 42.6 3.9 35 15-49 152-186 (350)
41 PLN00411 nodulin MtN21 family 94.4 0.06 1.3E-06 42.8 4.1 38 14-51 115-158 (358)
42 PF08449 UAA: UAA transporter 93.5 0.06 1.3E-06 40.9 2.5 42 12-53 99-140 (303)
43 KOG1580 UDP-galactose transpor 93.3 0.15 3.3E-06 40.8 4.6 37 13-49 277-313 (337)
44 COG2962 RarD Predicted permeas 93.3 0.24 5.3E-06 39.5 5.6 44 12-55 246-289 (293)
45 KOG1581 UDP-galactose transpor 93.2 0.086 1.9E-06 42.7 3.0 42 12-53 276-317 (327)
46 PRK11272 putative DMT superfam 93.1 0.14 3E-06 38.5 3.9 35 14-49 107-141 (292)
47 KOG4510 Permease of the drug/m 92.7 0.067 1.4E-06 43.3 1.7 39 14-52 134-172 (346)
48 COG0697 RhaT Permeases of the 92.0 0.21 4.6E-06 35.5 3.5 39 14-52 107-146 (292)
49 PF10639 UPF0546: Uncharacteri 91.9 0.13 2.9E-06 35.6 2.3 33 14-46 79-111 (113)
50 TIGR00776 RhaT RhaT L-rhamnose 91.5 0.14 3.1E-06 38.9 2.3 36 16-51 99-138 (290)
51 PF08507 COPI_assoc: COPI asso 91.4 0.73 1.6E-05 31.8 5.5 40 12-52 69-108 (136)
52 KOG2765 Predicted membrane pro 90.0 0.1 2.2E-06 43.4 0.3 40 15-54 197-236 (416)
53 PF06679 DUF1180: Protein of u 89.8 0.47 1E-05 34.9 3.6 54 34-90 101-154 (163)
54 KOG1582 UDP-galactose transpor 89.7 0.35 7.6E-06 39.4 3.1 40 12-51 295-334 (367)
55 PF04342 DUF486: Protein of un 88.9 0.51 1.1E-05 32.9 3.1 42 5-46 64-105 (108)
56 KOG3912 Predicted integral mem 87.3 0.65 1.4E-05 38.0 3.2 44 7-50 292-335 (372)
57 COG2962 RarD Predicted permeas 86.4 0.93 2E-05 36.3 3.6 33 15-47 110-142 (293)
58 COG3169 Uncharacterized protei 85.8 1.8 3.9E-05 30.4 4.4 44 4-47 70-113 (116)
59 KOG2234 Predicted UDP-galactos 85.2 1.1 2.4E-05 36.6 3.5 42 12-53 285-326 (345)
60 KOG2234 Predicted UDP-galactos 82.3 3.9 8.4E-05 33.4 5.6 42 7-48 122-163 (345)
61 PF05653 Mg_trans_NIPA: Magnes 80.3 1.8 3.9E-05 33.8 2.9 42 10-51 83-124 (300)
62 KOG1442 GDP-fucose transporter 80.0 1.2 2.5E-05 36.4 1.8 52 7-58 285-336 (347)
63 COG5006 rhtA Threonine/homoser 75.7 4.1 8.9E-05 32.7 3.7 34 14-47 247-280 (292)
64 KOG1583 UDP-N-acetylglucosamin 74.2 2.7 5.9E-05 34.1 2.4 40 12-51 277-316 (330)
65 KOG2766 Predicted membrane pro 72.1 0.58 1.3E-05 37.9 -1.8 43 11-53 112-154 (336)
66 PF05653 Mg_trans_NIPA: Magnes 70.5 4.5 9.8E-05 31.6 2.8 39 13-51 250-294 (300)
67 PF07857 DUF1632: CEO family ( 69.2 2.7 5.8E-05 32.6 1.3 26 29-54 114-139 (254)
68 PF06800 Sugar_transport: Suga 67.8 5.7 0.00012 31.2 2.9 38 15-52 84-125 (269)
69 KOG3912 Predicted integral mem 65.7 6 0.00013 32.5 2.7 37 15-51 124-160 (372)
70 COG5070 VRG4 Nucleotide-sugar 63.2 18 0.00038 29.1 4.8 46 8-53 255-300 (309)
71 PF13755 Sensor_TM1: Sensor N- 63.0 7.5 0.00016 25.6 2.3 21 31-51 20-40 (79)
72 PF04142 Nuc_sug_transp: Nucle 59.8 8.9 0.00019 29.0 2.6 34 6-39 210-243 (244)
73 PF04657 DUF606: Protein of un 59.0 12 0.00027 26.0 3.0 20 27-46 119-138 (138)
74 PF04156 IncA: IncA protein; 58.5 26 0.00056 24.7 4.7 20 32-51 38-57 (191)
75 PRK02935 hypothetical protein; 57.0 25 0.00054 24.7 4.2 41 12-53 21-64 (110)
76 KOG2766 Predicted membrane pro 55.4 8.2 0.00018 31.4 1.8 27 23-49 273-299 (336)
77 PF07444 Ycf66_N: Ycf66 protei 53.6 15 0.00033 24.3 2.6 24 28-51 4-27 (84)
78 PRK02237 hypothetical protein; 53.2 23 0.0005 24.7 3.6 32 16-47 72-103 (109)
79 PF13994 PgaD: PgaD-like prote 51.8 19 0.00041 25.0 3.0 30 29-58 61-90 (138)
80 PRK10746 putative transport pr 50.8 32 0.00069 27.7 4.5 27 32-58 430-456 (461)
81 PF02694 UPF0060: Uncharacteri 49.8 24 0.00051 24.6 3.2 33 15-47 69-101 (107)
82 PF05915 DUF872: Eukaryotic pr 49.4 26 0.00056 24.2 3.3 14 34-47 52-65 (115)
83 TIGR00803 nst UDP-galactose tr 49.2 19 0.00042 25.8 2.8 41 13-53 14-54 (222)
84 COG1030 NfeD Membrane-bound se 49.2 24 0.00052 29.8 3.6 32 16-47 264-295 (436)
85 PF05545 FixQ: Cbb3-type cytoc 45.6 42 0.00092 19.3 3.4 16 37-52 18-33 (49)
86 COG3238 Uncharacterized protei 45.4 47 0.001 24.1 4.3 25 27-51 124-148 (150)
87 PF10855 DUF2648: Protein of u 45.4 29 0.00064 19.5 2.5 19 37-55 6-24 (33)
88 COG4736 CcoQ Cbb3-type cytochr 44.6 10 0.00022 23.8 0.6 17 36-52 17-33 (60)
89 COG0811 TolQ Biopolymer transp 42.3 47 0.001 24.7 4.0 19 34-52 171-189 (216)
90 PHA03049 IMV membrane protein; 41.3 41 0.00089 21.8 3.1 20 33-52 6-25 (68)
91 PF05961 Chordopox_A13L: Chord 41.2 25 0.00054 22.7 2.1 20 33-52 6-25 (68)
92 PRK12437 prolipoprotein diacyl 40.4 24 0.00051 27.1 2.2 22 29-50 235-256 (269)
93 PF12273 RCR: Chitin synthesis 40.0 45 0.00097 22.7 3.4 21 34-54 9-29 (130)
94 PF11044 TMEMspv1-c74-12: Plec 39.9 76 0.0017 19.2 3.9 29 14-52 3-31 (49)
95 PF15168 TRIQK: Triple QxxK/R 39.9 46 0.001 22.1 3.2 19 5-24 42-60 (79)
96 PF10883 DUF2681: Protein of u 39.1 47 0.001 22.1 3.2 23 34-56 7-29 (87)
97 KOG2922 Uncharacterized conser 38.9 10 0.00022 31.0 0.0 41 12-52 99-139 (335)
98 COG3296 Uncharacterized protei 38.8 51 0.0011 24.0 3.6 32 14-45 76-107 (143)
99 TIGR02797 exbB tonB-system ene 36.7 67 0.0014 23.7 4.1 20 34-53 171-190 (211)
100 PRK15015 carbon starvation pro 36.7 74 0.0016 28.6 4.9 56 26-81 29-84 (701)
101 PF11023 DUF2614: Protein of u 36.5 57 0.0012 23.0 3.4 42 12-53 20-63 (114)
102 KOG1278 Endosomal membrane pro 36.2 30 0.00064 30.6 2.4 23 29-51 267-289 (628)
103 KOG4314 Predicted carbohydrate 36.0 19 0.00041 28.5 1.1 37 14-50 90-126 (290)
104 TIGR02796 tolQ TolQ protein. T 36.0 70 0.0015 23.7 4.1 20 34-53 175-194 (215)
105 PF08566 Pam17: Mitochondrial 35.4 93 0.002 23.3 4.6 44 4-47 39-92 (173)
106 PRK10801 colicin uptake protei 34.8 73 0.0016 24.0 4.1 20 34-53 176-195 (227)
107 PRK13499 rhamnose-proton sympo 34.7 61 0.0013 26.3 3.8 35 15-49 112-153 (345)
108 PF09163 Form-deh_trans: Forma 34.5 53 0.0011 19.4 2.6 28 20-47 3-30 (44)
109 PF14880 COX14: Cytochrome oxi 32.7 58 0.0013 19.7 2.7 27 28-54 15-41 (59)
110 KOG1580 UDP-galactose transpor 32.4 16 0.00034 29.6 0.1 35 13-47 121-155 (337)
111 KOG4510 Permease of the drug/m 32.3 35 0.00076 28.0 2.1 39 15-53 291-329 (346)
112 PRK01637 hypothetical protein; 31.6 2E+02 0.0042 21.9 6.0 26 31-56 248-273 (286)
113 COG4589 Predicted CDP-diglycer 31.5 89 0.0019 25.3 4.2 43 4-46 208-254 (303)
114 PRK13664 hypothetical protein; 31.5 85 0.0019 19.9 3.3 36 37-72 12-49 (62)
115 PF00873 ACR_tran: AcrB/AcrD/A 31.4 1.1E+02 0.0023 27.4 5.1 43 13-55 898-945 (1021)
116 PF13273 DUF4064: Protein of u 31.2 1.1E+02 0.0023 19.6 3.9 32 11-46 66-97 (100)
117 PRK12587 putative monovalent c 30.7 1.3E+02 0.0027 20.9 4.4 32 18-49 24-61 (118)
118 PRK10414 biopolymer transport 30.7 92 0.002 23.9 4.1 19 34-52 182-200 (244)
119 KOG3269 Predicted membrane pro 30.4 99 0.0021 23.4 4.1 25 18-42 38-62 (180)
120 PF14851 FAM176: FAM176 family 30.2 1.5E+02 0.0032 21.6 4.9 14 34-47 31-44 (153)
121 PF10710 DUF2512: Protein of u 29.9 2E+02 0.0044 20.3 5.9 51 4-54 55-110 (136)
122 PF06084 Cytomega_TRL10: Cytom 29.9 27 0.00059 25.2 1.0 25 65-89 123-149 (150)
123 PF08172 CASP_C: CASP C termin 29.7 1.2E+02 0.0027 23.3 4.7 40 14-53 202-241 (248)
124 PF07214 DUF1418: Protein of u 29.2 99 0.0022 21.1 3.6 33 15-47 19-56 (96)
125 PF13980 UPF0370: Uncharacteri 28.9 97 0.0021 19.7 3.3 36 37-72 11-48 (63)
126 KOG3415 Putative Rab5-interact 28.5 1.8E+02 0.004 20.8 5.0 52 4-55 40-92 (129)
127 TIGR00966 3a0501s07 protein-ex 28.2 1.2E+02 0.0026 22.7 4.3 37 8-45 128-164 (246)
128 PF15099 PIRT: Phosphoinositid 27.9 23 0.00049 25.5 0.3 26 25-50 73-98 (129)
129 PF05399 EVI2A: Ectropic viral 27.9 1.9E+02 0.0041 22.6 5.4 30 15-53 132-161 (227)
130 PRK13871 conjugal transfer pro 27.2 1.4E+02 0.0031 21.5 4.3 37 8-44 52-90 (135)
131 PF11381 DUF3185: Protein of u 27.0 29 0.00064 21.6 0.7 17 33-49 1-17 (59)
132 PRK09697 protein secretion pro 26.9 47 0.001 23.9 1.8 21 25-47 20-40 (139)
133 TIGR00847 ccoS cytochrome oxid 26.7 84 0.0018 19.0 2.6 11 75-85 37-48 (51)
134 KOG1479 Nucleoside transporter 26.5 2.6E+02 0.0057 23.3 6.3 53 6-58 157-217 (406)
135 PF02554 CstA: Carbon starvati 26.2 1.1E+02 0.0025 25.4 4.1 45 37-81 9-53 (376)
136 PF15240 Pro-rich: Proline-ric 25.6 43 0.00094 25.2 1.4 19 37-55 1-19 (179)
137 PF15361 RIC3: Resistance to i 25.5 1E+02 0.0022 22.2 3.3 20 41-60 90-109 (152)
138 PHA03231 glycoprotein BALF4; P 25.4 1.6E+02 0.0034 27.0 5.1 38 8-47 685-722 (829)
139 PRK10503 multidrug efflux syst 25.4 93 0.002 28.3 3.7 35 10-45 897-931 (1040)
140 cd01324 cbb3_Oxidase_CcoQ Cyto 25.2 45 0.00097 19.7 1.2 19 36-54 18-36 (48)
141 COG0670 Integral membrane prot 25.0 2E+02 0.0042 22.0 5.0 46 9-54 151-196 (233)
142 KOG2443 Uncharacterized conser 24.9 1.2E+02 0.0025 25.3 3.9 33 19-52 163-197 (362)
143 PRK11357 frlA putative fructos 24.9 1.3E+02 0.0027 23.8 4.0 21 35-55 419-439 (445)
144 PRK09757 PTS system N-acetylga 24.4 90 0.002 24.4 3.1 9 81-89 258-266 (267)
145 PF10661 EssA: WXG100 protein 24.2 79 0.0017 22.6 2.5 18 34-51 125-142 (145)
146 PF12158 DUF3592: Protein of u 24.2 99 0.0021 20.2 2.9 16 34-49 13-28 (148)
147 PF03402 V1R: Vomeronasal orga 24.2 29 0.00062 27.1 0.3 57 19-79 148-205 (265)
148 PRK12585 putative monovalent c 24.0 96 0.0021 23.7 3.1 29 19-47 24-58 (197)
149 PF13858 DUF4199: Protein of u 23.9 2.4E+02 0.0052 19.1 5.3 40 5-44 2-45 (163)
150 PF10066 DUF2304: Uncharacteri 23.4 63 0.0014 21.6 1.8 46 9-55 46-91 (115)
151 PF04156 IncA: IncA protein; 23.3 1.3E+02 0.0028 21.2 3.5 17 35-51 48-64 (191)
152 PF01024 Colicin: Colicin pore 22.7 1.3E+02 0.0028 22.8 3.5 18 30-47 157-174 (187)
153 PF04549 CD47: CD47 transmembr 22.3 84 0.0018 23.1 2.4 40 7-46 37-76 (157)
154 PF04304 DUF454: Protein of un 22.3 1.4E+02 0.003 18.0 3.1 24 11-34 33-56 (71)
155 PRK09579 multidrug efflux prot 22.3 1.5E+02 0.0034 26.9 4.5 34 14-48 881-914 (1017)
156 PF06965 Na_H_antiport_1: Na+/ 22.3 1.7E+02 0.0037 24.3 4.4 44 10-53 156-199 (378)
157 PRK13021 secF preprotein trans 22.3 1.8E+02 0.0038 23.0 4.4 39 8-47 156-194 (297)
158 PF10529 Hist_rich_Ca-bd: Hist 21.7 42 0.00091 15.8 0.5 6 83-88 9-14 (15)
159 COG3374 Predicted membrane pro 21.3 45 0.00098 25.5 0.8 26 25-53 75-100 (197)
160 PF06168 DUF981: Protein of un 21.0 59 0.0013 24.5 1.4 12 36-47 108-119 (191)
161 PF11694 DUF3290: Protein of u 20.5 3.3E+02 0.0072 19.5 5.5 48 10-57 23-73 (149)
162 PRK09577 multidrug efflux prot 20.4 1.3E+02 0.0028 27.4 3.6 33 15-48 903-935 (1032)
163 cd08764 Cyt_b561_CG1275_like N 20.4 1.3E+02 0.0028 22.9 3.2 20 32-51 176-195 (214)
164 PF14283 DUF4366: Domain of un 20.2 33 0.00072 26.1 -0.1 18 41-58 171-188 (218)
No 1
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.87 E-value=2e-09 Score=72.55 Aligned_cols=43 Identities=23% Similarity=0.413 Sum_probs=41.7
Q ss_pred hhhHhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhH
Q 034574 7 DSQRILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNW 49 (90)
Q Consensus 7 ~VaGI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~ 49 (90)
+|+|.+|+++++++|+++|+|++|+.+++|++++++|+++|+|
T Consensus 111 ~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 111 SVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 6899999999999999999999999999999999999999975
No 2
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=98.63 E-value=2e-09 Score=85.13 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=46.5
Q ss_pred hhhHhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhHHHH
Q 034574 7 DSQRILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKL 55 (90)
Q Consensus 7 ~VaGI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~~~~ 55 (90)
+|+|.+|.++.++.|+++|++|+|+.|++|++++++|+++|++.|.++.
T Consensus 265 ~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~ 313 (316)
T KOG1441|consen 265 SVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEK 313 (316)
T ss_pred hhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 7999999999999999999999999999999999999999999998643
No 3
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.59 E-value=6.1e-08 Score=77.88 Aligned_cols=42 Identities=21% Similarity=0.357 Sum_probs=40.7
Q ss_pred hhhhHhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHH
Q 034574 6 KDSQRILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLF 47 (90)
Q Consensus 6 ~~VaGI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvly 47 (90)
-+|+||+||++|+++++.+-+|.++.+|++|+++|+.|+++|
T Consensus 272 lSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 272 LSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred eeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 379999999999999999999999999999999999999999
No 4
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.43 E-value=2.5e-07 Score=72.13 Aligned_cols=45 Identities=20% Similarity=0.386 Sum_probs=43.1
Q ss_pred hhhHhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHh
Q 034574 7 DSQRILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 7 ~VaGI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K 51 (90)
+|++.+|.++++++|+++|||++|+.+++|.+++++|+.+|++.|
T Consensus 306 sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k 350 (350)
T PTZ00343 306 AVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK 350 (350)
T ss_pred HHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence 789999999999999999999999999999999999999998764
No 5
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.32 E-value=2.3e-07 Score=69.62 Aligned_cols=47 Identities=21% Similarity=0.313 Sum_probs=44.2
Q ss_pred hhhHhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhHH
Q 034574 7 DSQRILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 7 ~VaGI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~~ 53 (90)
++.|.+|.++++++|+++|||++|+.+++|.+++++|+.+|++.|.+
T Consensus 251 sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~ 297 (302)
T TIGR00817 251 SVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQ 297 (302)
T ss_pred HHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence 67899999999999999999999999999999999999999987754
No 6
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.96 E-value=1.2e-05 Score=55.48 Aligned_cols=39 Identities=26% Similarity=0.278 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHH
Q 034574 12 LLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWY 50 (90)
Q Consensus 12 ~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~ 50 (90)
++.+.|.++|+++|+|++++.+++|++++++||+..|..
T Consensus 66 iG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 66 IGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 567899999999999999999999999999999999764
No 7
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.96 E-value=1.4e-05 Score=54.58 Aligned_cols=40 Identities=15% Similarity=0.162 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHh
Q 034574 12 LLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 12 ~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K 51 (90)
+.-+.+.++|+++|+|++|+.+++|++++++||++.|...
T Consensus 66 lG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 66 VGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4667889999999999999999999999999999996543
No 8
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.92 E-value=1.2e-05 Score=56.00 Aligned_cols=46 Identities=22% Similarity=0.262 Sum_probs=39.2
Q ss_pred chhhhHhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHh
Q 034574 5 YKDSQRILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 5 ~~~VaGI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K 51 (90)
|---.|+ .-+.+.++|+++|||++|+.+++|++++++||++.|...
T Consensus 60 Yavw~Gi-G~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 60 YALWEGI-GILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 3334455 788899999999999999999999999999999996654
No 9
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.89 E-value=1.9e-05 Score=53.70 Aligned_cols=39 Identities=8% Similarity=0.025 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHH
Q 034574 12 LLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWY 50 (90)
Q Consensus 12 ~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~ 50 (90)
++.+.+.++|+++|||++|+.+++|++++++||+..|..
T Consensus 65 iG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~ 103 (105)
T PRK11431 65 IGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS 103 (105)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 567889999999999999999999999999999998653
No 10
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.85 E-value=2.7e-05 Score=53.42 Aligned_cols=38 Identities=13% Similarity=0.210 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhH
Q 034574 12 LLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNW 49 (90)
Q Consensus 12 ~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~ 49 (90)
++.+.+.++|+++|||++|+.+++|++++++||++.|.
T Consensus 71 iG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lkl 108 (109)
T PRK10650 71 FGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIKL 108 (109)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 56788999999999999999999999999999999863
No 11
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.84 E-value=2.3e-05 Score=59.49 Aligned_cols=48 Identities=19% Similarity=0.415 Sum_probs=44.2
Q ss_pred hhhHhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhHHH
Q 034574 7 DSQRILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQK 54 (90)
Q Consensus 7 ~VaGI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~~~ 54 (90)
++.+..+-++++++|+++|++++++.+++|++++++|+.+|++.|.++
T Consensus 255 t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 255 TIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 467788999999999999999999999999999999999999998753
No 12
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.76 E-value=4.1e-05 Score=51.76 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHh
Q 034574 12 LLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFN 48 (90)
Q Consensus 12 ~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn 48 (90)
..-+.+.++|+++|||++|+.+++|++++++||++..
T Consensus 72 l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 72 LNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4557889999999999999999999999999999864
No 13
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=97.41 E-value=0.00026 Score=46.80 Aligned_cols=39 Identities=18% Similarity=0.463 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhH
Q 034574 14 QYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 14 eiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~ 52 (90)
-+++.++|.++|+|++++.+++|.+++++||++.++...
T Consensus 71 pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 71 PIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 456888999999999999999999999999999987765
No 14
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.29 E-value=0.00044 Score=48.19 Aligned_cols=33 Identities=30% Similarity=0.497 Sum_probs=27.9
Q ss_pred HHHHHH--HHhcCccchhhhhHHHHHHhHHHHHhH
Q 034574 17 NVQVAV--FYFHDEFTWLKGFGLFTILVGVSLFNW 49 (90)
Q Consensus 17 tI~iSv--~iFge~lT~lni~Gl~iii~GVvlyn~ 49 (90)
+.+.++ ++|||++|+.+++|++++++||++.+.
T Consensus 88 v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 88 VYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 334444 489999999999999999999999875
No 15
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.23 E-value=0.0008 Score=42.50 Aligned_cols=40 Identities=18% Similarity=0.417 Sum_probs=35.4
Q ss_pred hHhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHh
Q 034574 9 QRILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFN 48 (90)
Q Consensus 9 aGI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn 48 (90)
....--++++++++++++|++++.+++|+++++.|+++.+
T Consensus 86 ~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 86 LQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3445568899999999999999999999999999999875
No 16
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=96.99 E-value=0.0016 Score=51.69 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhHHH
Q 034574 12 LLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQK 54 (90)
Q Consensus 12 ~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~~~ 54 (90)
+--+.++++|++++||++++..++|.+++++|+.+.++.|-++
T Consensus 291 L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~ 333 (358)
T PLN00411 291 LSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANE 333 (358)
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4457789999999999999999999999999999998766443
No 17
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.74 E-value=0.0013 Score=47.48 Aligned_cols=43 Identities=14% Similarity=0.141 Sum_probs=39.1
Q ss_pred chhhhHhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHH
Q 034574 5 YKDSQRILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLF 47 (90)
Q Consensus 5 ~~~VaGI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvly 47 (90)
.|+++....-++++++|+++||+++|+..++|..++++|+.+|
T Consensus 180 ~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 180 TKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 4677788888999999999999999999999999999998775
No 18
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=96.71 E-value=0.0038 Score=47.08 Aligned_cols=44 Identities=7% Similarity=0.033 Sum_probs=37.8
Q ss_pred hhHhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHh
Q 034574 8 SQRILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 8 VaGI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K 51 (90)
+..-.--+..+++|+++|||++++.+++|.+++++|++++.+..
T Consensus 240 ~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 240 TLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 33445567899999999999999999999999999999997654
No 19
>COG2510 Predicted membrane protein [Function unknown]
Probab=96.70 E-value=0.001 Score=48.04 Aligned_cols=35 Identities=14% Similarity=0.402 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHh
Q 034574 14 QYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFN 48 (90)
Q Consensus 14 eiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn 48 (90)
-++++++|++++||++|..+++|.+++.+|+++..
T Consensus 104 vvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 104 VVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 47899999999999999999999999999998764
No 20
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.0018 Score=51.85 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=42.6
Q ss_pred hhhHhHHHHHHHHHHHHHhcC-ccchhhhhHHHHHHhHHHHHhHHhHHHH
Q 034574 7 DSQRILLQYVNVQVAVFYFHD-EFTWLKGFGLFTILVGVSLFNWYKYQKL 55 (90)
Q Consensus 7 ~VaGI~KeiltI~iSv~iFge-~lT~lni~Gl~iii~GVvlyn~~K~~~~ 55 (90)
++.| +|..+...++.++|+| ++++.|++|+.+.++|=++|++.+++++
T Consensus 258 tivG-~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k 306 (314)
T KOG1444|consen 258 TIVG-AKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKK 306 (314)
T ss_pred eehh-hhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhc
Confidence 4678 8999988888888887 7999999999999999999999998654
No 21
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=96.60 E-value=0.0038 Score=46.97 Aligned_cols=43 Identities=19% Similarity=0.108 Sum_probs=37.3
Q ss_pred HhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhH
Q 034574 10 RILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 10 GI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~ 52 (90)
.-+--+.++++|++++||++|+..++|.+++++|+++.++.+.
T Consensus 246 ~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 246 AYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445578889999999999999999999999999999877554
No 22
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=96.35 E-value=0.0048 Score=46.05 Aligned_cols=33 Identities=12% Similarity=0.413 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHH
Q 034574 14 QYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSL 46 (90)
Q Consensus 14 eiltI~iSv~iFge~lT~lni~Gl~iii~GVvl 46 (90)
=++.+++|+++|||++|+..++|.+++++|+++
T Consensus 248 pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 248 IVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 377889999999999999999999999999986
No 23
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.32 E-value=0.0027 Score=50.70 Aligned_cols=39 Identities=21% Similarity=0.600 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhH
Q 034574 14 QYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 14 eiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~ 52 (90)
+...+++++++||++++|+-++|++++++|+++||....
T Consensus 270 d~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~ 308 (334)
T PF06027_consen 270 DFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES 308 (334)
T ss_pred hHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence 456789999999999999999999999999999987654
No 24
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.25 E-value=0.0054 Score=40.06 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=19.4
Q ss_pred hhHhHHHHHHHHHHHHHhcCccchhhhhHHHHH
Q 034574 8 SQRILLQYVNVQVAVFYFHDEFTWLKGFGLFTI 40 (90)
Q Consensus 8 VaGI~KeiltI~iSv~iFge~lT~lni~Gl~ii 40 (90)
-+|+ ..+.+.++|+++|||++|+.+++|++++
T Consensus 62 w~g~-g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 62 WTGL-GIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHH-HHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3444 5688999999999999999999999875
No 25
>PRK11689 aromatic amino acid exporter; Provisional
Probab=96.11 E-value=0.0092 Score=45.03 Aligned_cols=39 Identities=10% Similarity=0.120 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhH
Q 034574 11 ILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNW 49 (90)
Q Consensus 11 I~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~ 49 (90)
.+--++.+++|++++||++|+..++|.++++.|+++...
T Consensus 249 ~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 249 YFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 344578899999999999999999999999999987744
No 26
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=96.11 E-value=0.023 Score=42.88 Aligned_cols=43 Identities=14% Similarity=0.078 Sum_probs=36.9
Q ss_pred HhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhH
Q 034574 10 RILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 10 GI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~ 52 (90)
.-+.-++.+++|+++|||++|+.+++|++++++|+.++...-.
T Consensus 246 ~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~ 288 (296)
T PRK15430 246 QYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAI 288 (296)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677889999999999999999999999999888877554
No 27
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=96.03 E-value=0.009 Score=44.59 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhH
Q 034574 13 LQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNW 49 (90)
Q Consensus 13 KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~ 49 (90)
.-+++.++|+++|+|++++.+++|++++++|+++...
T Consensus 99 ~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 99 SPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4678889999999999999999999999999998754
No 28
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=95.98 E-value=0.011 Score=43.36 Aligned_cols=36 Identities=11% Similarity=0.143 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHh
Q 034574 13 LQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFN 48 (90)
Q Consensus 13 KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn 48 (90)
--+.+.++|.++|+|++++.+++|+++.++||++..
T Consensus 106 ~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 106 NPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999764
No 29
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=95.87 E-value=0.012 Score=44.38 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHh
Q 034574 13 LQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 13 KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K 51 (90)
-=++.+++|++++||++++..++|.+++++|+.+-.+.+
T Consensus 251 ~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 251 VPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 346788999999999999999999999999998776544
No 30
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=95.79 E-value=0.013 Score=42.24 Aligned_cols=36 Identities=11% Similarity=-0.083 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhH
Q 034574 14 QYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNW 49 (90)
Q Consensus 14 eiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~ 49 (90)
-+++.++|.++++|++++.+++|++++++|+++...
T Consensus 84 P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 84 PLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 468899999999999999999999999999999753
No 31
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=95.77 E-value=0.016 Score=41.70 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=34.1
Q ss_pred hhhHhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHH
Q 034574 7 DSQRILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVS 45 (90)
Q Consensus 7 ~VaGI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVv 45 (90)
++.....-++++++|+++|||++++.+++|.+++++|+.
T Consensus 222 s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 222 SILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 445566778899999999999999999999999999973
No 32
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=95.74 E-value=0.015 Score=43.85 Aligned_cols=36 Identities=14% Similarity=0.325 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHh
Q 034574 13 LQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFN 48 (90)
Q Consensus 13 KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn 48 (90)
--+.+.++|+++++|++++.+++|+++.++||++.-
T Consensus 109 ~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 109 NPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999999999999874
No 33
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=95.50 E-value=0.015 Score=44.37 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=37.0
Q ss_pred hhHhHHHHHHHHHHHHHhcCccchhhh----hHHHHHHhHHHHHhHHh
Q 034574 8 SQRILLQYVNVQVAVFYFHDEFTWLKG----FGLFTILVGVSLFNWYK 51 (90)
Q Consensus 8 VaGI~KeiltI~iSv~iFge~lT~lni----~Gl~iii~GVvlyn~~K 51 (90)
+...+--++.+++|+++|||+.++.++ +|.++++.|+++....|
T Consensus 243 ~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~~ 290 (290)
T TIGR00776 243 SLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIGK 290 (290)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhccC
Confidence 344455678889999999999999999 99999999999876543
No 34
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=95.02 E-value=0.024 Score=42.92 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=40.9
Q ss_pred hhHhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhH
Q 034574 8 SQRILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 8 VaGI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~ 52 (90)
+....|-+.|.++++++++.++++.+++++++.++|+++......
T Consensus 48 vl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 48 VLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred HHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 566789999999999999999999999999999999999866654
No 35
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=94.97 E-value=0.064 Score=38.18 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHH
Q 034574 11 ILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWY 50 (90)
Q Consensus 11 I~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~ 50 (90)
...-+..+++++++|+|++++..++|.+++++|+++.+..
T Consensus 249 ~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 249 LLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 3455566667999999999999999999999999999765
No 36
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=94.95 E-value=0.016 Score=46.30 Aligned_cols=38 Identities=13% Similarity=0.392 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhH
Q 034574 15 YVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 15 iltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~ 52 (90)
..++++|++++++++++.+++|.++|++|+++......
T Consensus 117 ~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~ 154 (334)
T PF06027_consen 117 PFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV 154 (334)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence 56889999999999999999999999999999876664
No 37
>PRK11689 aromatic amino acid exporter; Provisional
Probab=94.94 E-value=0.032 Score=42.10 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhH
Q 034574 14 QYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNW 49 (90)
Q Consensus 14 eiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~ 49 (90)
=+.+++++.++++|++++.+++|+++.++|+++.-.
T Consensus 102 Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~ 137 (295)
T PRK11689 102 PSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG 137 (295)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence 456778999999999999999999999999988754
No 38
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=94.89 E-value=0.039 Score=41.64 Aligned_cols=35 Identities=14% Similarity=0.256 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhH
Q 034574 15 YVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNW 49 (90)
Q Consensus 15 iltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~ 49 (90)
+++.+++.++++|+++..+++|+++.++|+++...
T Consensus 98 i~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 98 FFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence 57888999999999999999999999999998753
No 39
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=94.86 E-value=0.039 Score=41.41 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=34.4
Q ss_pred hhHhHH---HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHH
Q 034574 8 SQRILL---QYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLF 47 (90)
Q Consensus 8 VaGI~K---eiltI~iSv~iFge~lT~lni~Gl~iii~GVvly 47 (90)
.++++| -+++++++.++++|++++.+++|++++++|+++.
T Consensus 93 ~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 93 FTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 345555 5778999999999999999999999999999865
No 40
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=94.51 E-value=0.051 Score=42.55 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhH
Q 034574 15 YVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNW 49 (90)
Q Consensus 15 iltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~ 49 (90)
+++++++.++++|++++.+++|++++++||.+...
T Consensus 152 vft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 152 VFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 56889999999999999999999999999998653
No 41
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=94.37 E-value=0.06 Score=42.84 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=32.7
Q ss_pred HHHHHHHHHHH------hcCccchhhhhHHHHHHhHHHHHhHHh
Q 034574 14 QYVNVQVAVFY------FHDEFTWLKGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 14 eiltI~iSv~i------Fge~lT~lni~Gl~iii~GVvlyn~~K 51 (90)
-+.+.++++++ |+|++++.+++|++++++|+++.-.++
T Consensus 115 P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~ 158 (358)
T PLN00411 115 PALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYH 158 (358)
T ss_pred HHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHcc
Confidence 46788889888 799999999999999999999875443
No 42
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=93.48 E-value=0.06 Score=40.85 Aligned_cols=42 Identities=12% Similarity=0.222 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhHH
Q 034574 12 LLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 12 ~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~~ 53 (90)
.|-+.+.++|+++++.+.++.++++.+++.+|++++...+..
T Consensus 99 ~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~ 140 (303)
T PF08449_consen 99 SKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSS 140 (303)
T ss_pred hHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccc
Confidence 467788999999999999999999999999999999887754
No 43
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.32 E-value=0.15 Score=40.84 Aligned_cols=37 Identities=8% Similarity=0.221 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhH
Q 034574 13 LQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNW 49 (90)
Q Consensus 13 KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~ 49 (90)
+-..||++|+++|+.|++..+++|-++.+.+..+=..
T Consensus 277 RKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~ 313 (337)
T KOG1580|consen 277 RKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVV 313 (337)
T ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhh
Confidence 4467999999999999999999999999998765443
No 44
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=93.26 E-value=0.24 Score=39.55 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhHHHH
Q 034574 12 LLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKL 55 (90)
Q Consensus 12 ~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~~~~ 55 (90)
+.-.+..++|+++|||+++..+.+.++.+-+|+++|.+..+.+.
T Consensus 246 i~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~ 289 (293)
T COG2962 246 IEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTA 289 (293)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999998887643
No 45
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.16 E-value=0.086 Score=42.69 Aligned_cols=42 Identities=14% Similarity=0.217 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhHH
Q 034574 12 LLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 12 ~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~~ 53 (90)
.+.+..|++|.++||.++++.+++|..+.+.|+.+=.+-|..
T Consensus 276 tRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 276 TRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 467889999999999999999999999999999988777765
No 46
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=93.13 E-value=0.14 Score=38.49 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhH
Q 034574 14 QYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNW 49 (90)
Q Consensus 14 eiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~ 49 (90)
-+++.++|.+ |||++++..++|+++.++|+++.+.
T Consensus 107 Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 107 PLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred HHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence 3566777864 8999999999999999999998864
No 47
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=92.67 E-value=0.067 Score=43.31 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhH
Q 034574 14 QYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 14 eiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~ 52 (90)
-++|+++|+.+.+||+|..+.+|..+.+.||++..+.-+
T Consensus 134 Pvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpF 172 (346)
T KOG4510|consen 134 PVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPF 172 (346)
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCc
Confidence 468999999999999999999999999999999977554
No 48
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=92.03 E-value=0.21 Score=35.49 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=32.2
Q ss_pred HHHHHHHHH-HHhcCccchhhhhHHHHHHhHHHHHhHHhH
Q 034574 14 QYVNVQVAV-FYFHDEFTWLKGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 14 eiltI~iSv-~iFge~lT~lni~Gl~iii~GVvlyn~~K~ 52 (90)
-+.+.+++. ++++|++++.+++|+.+.+.|+++.....-
T Consensus 107 p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~ 146 (292)
T COG0697 107 PLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGG 146 (292)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCC
Confidence 356677785 666999999999999999999999876554
No 49
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=91.90 E-value=0.13 Score=35.65 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHH
Q 034574 14 QYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSL 46 (90)
Q Consensus 14 eiltI~iSv~iFge~lT~lni~Gl~iii~GVvl 46 (90)
=+.|++.+.++.++..++..++|++++++||.+
T Consensus 79 fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 79 FVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 367888998888888899999999999999975
No 50
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=91.54 E-value=0.14 Score=38.94 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCccchhh----hhHHHHHHhHHHHHhHHh
Q 034574 16 VNVQVAVFYFHDEFTWLK----GFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 16 ltI~iSv~iFge~lT~ln----i~Gl~iii~GVvlyn~~K 51 (90)
...++|+++|||+.|..+ ++|++++++|+++....+
T Consensus 99 ~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 99 GGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 556789999999999999 999999999999985554
No 51
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=91.36 E-value=0.73 Score=31.81 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhH
Q 034574 12 LLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 12 ~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~ 52 (90)
-|-+.-+++|.+.++. -....++|..+++.|++..-..-.
T Consensus 69 GRGlfyif~G~l~~~~-~~~~~i~g~~~~~~G~~~i~l~~~ 108 (136)
T PF08507_consen 69 GRGLFYIFLGTLCLGQ-SILSIIIGLLLFLVGVIYIILGFF 108 (136)
T ss_pred HHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888899999998 222356788899999887654443
No 52
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=89.95 E-value=0.1 Score=43.37 Aligned_cols=40 Identities=18% Similarity=0.324 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhHHH
Q 034574 15 YVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQK 54 (90)
Q Consensus 15 iltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~~~ 54 (90)
..|+++|+.+=+|+||+.++++.++.++||++++.++-++
T Consensus 197 ~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 197 FFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 4688889888899999999999999999999998887543
No 53
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=89.80 E-value=0.47 Score=34.88 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=23.9
Q ss_pred hhHHHHHHhHHHHHhHHhHHHHHhcccccCCCCCCccCCCccceEeccccccccCCC
Q 034574 34 GFGLFTILVGVSLFNWYKYQKLQAGHANEDGMLGSRETNASAKYVILEEIDDLDEGT 90 (90)
Q Consensus 34 i~Gl~iii~GVvlyn~~K~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~d~~~~~ 90 (90)
++|+..+++--+++..+|.++. ..+..+=+.+..+ ...-+-.+|+|+|||||.|
T Consensus 101 l~g~s~l~i~yfvir~~R~r~~-~rktRkYgvl~~~--~~~~Em~pL~~ddedeD~T 154 (163)
T PF06679_consen 101 LVGLSALAILYFVIRTFRLRRR-NRKTRKYGVLTTR--AENVEMAPLEEDDEDEDST 154 (163)
T ss_pred HHHHHHHHHHHHHHHHHhhccc-cccceeecccCCC--cccceecccCCCccccccc
Confidence 3455555555555555555431 1111222333332 2344566775555555533
No 54
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=89.68 E-value=0.35 Score=39.42 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHh
Q 034574 12 LLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 12 ~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K 51 (90)
.+-++||++|.++|-.|||..-.-|..+++.||.+=-+.|
T Consensus 295 aRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 295 ARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred hHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 3568999999999999999999999999999998765555
No 55
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=88.93 E-value=0.51 Score=32.94 Aligned_cols=42 Identities=24% Similarity=0.383 Sum_probs=30.4
Q ss_pred chhhhHhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHH
Q 034574 5 YKDSQRILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSL 46 (90)
Q Consensus 5 ~~~VaGI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvl 46 (90)
-|-+.=++-=.+-+.+|+++++|+++|..+.|.++++.+|..
T Consensus 64 LKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 64 LKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 333333333344467899999999999999999998887653
No 56
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=87.35 E-value=0.65 Score=38.01 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=38.9
Q ss_pred hhhHhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHH
Q 034574 7 DSQRILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWY 50 (90)
Q Consensus 7 ~VaGI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~ 50 (90)
.+.-.+++..+-++|...+.|.+..++++|+++.+.|+++||-.
T Consensus 292 mllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~i 335 (372)
T KOG3912|consen 292 MLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQI 335 (372)
T ss_pred HHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788888889999999999999999999999999999863
No 57
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=86.40 E-value=0.93 Score=36.30 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCccchhhhhHHHHHHhHHHHH
Q 034574 15 YVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLF 47 (90)
Q Consensus 15 iltI~iSv~iFge~lT~lni~Gl~iii~GVvly 47 (90)
.+.+++|.++|+|+++..+++-.+++.+||..-
T Consensus 110 L~~VllG~lflkErls~~Q~iAV~lA~~GV~~~ 142 (293)
T COG2962 110 LVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQ 142 (293)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999854
No 58
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.80 E-value=1.8 Score=30.37 Aligned_cols=44 Identities=25% Similarity=0.446 Sum_probs=32.2
Q ss_pred cchhhhHhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHH
Q 034574 4 QYKDSQRILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLF 47 (90)
Q Consensus 4 ~~~~VaGI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvly 47 (90)
|-|-..-++--++-..+|+++.+||+.|-.+.|.++++.||.+.
T Consensus 70 QLK~mQEVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 70 QLKTMQEVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 44443344444445567999999999999999999888887654
No 59
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=85.19 E-value=1.1 Score=36.56 Aligned_cols=42 Identities=12% Similarity=0.270 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhHH
Q 034574 12 LLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 12 ~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~~ 53 (90)
+--+++.++|+.+|+-++|..-++|..+++..+.+|+.+++.
T Consensus 285 ~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~ 326 (345)
T KOG2234|consen 285 VAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPAR 326 (345)
T ss_pred HHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCcc
Confidence 345678889999999999999999999999999999976664
No 60
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=82.35 E-value=3.9 Score=33.44 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=39.8
Q ss_pred hhhHhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHh
Q 034574 7 DSQRILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFN 48 (90)
Q Consensus 7 ~VaGI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn 48 (90)
.|....|=.-|.++++++.+.++++++|.-+++.++||++..
T Consensus 122 qVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 122 QVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred hhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 578889999999999999999999999999999999999986
No 61
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=80.34 E-value=1.8 Score=33.81 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=35.0
Q ss_pred HhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHh
Q 034574 10 RILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 10 GI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K 51 (90)
|-+.=+...++|.++.+|+++...++|.+++++|+++.-...
T Consensus 83 g~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 83 GALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA 124 (300)
T ss_pred HhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence 334456778899999999999999999999999998875443
No 62
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.01 E-value=1.2 Score=36.36 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=47.3
Q ss_pred hhhHhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhHHHHHhc
Q 034574 7 DSQRILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKLQAG 58 (90)
Q Consensus 7 ~VaGI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~~~~~~~ 58 (90)
+|.|-.|-+.--++++++++|..+.+-+-|-++++.|-.+|.+-|-++.+..
T Consensus 285 nISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~ 336 (347)
T KOG1442|consen 285 NISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKA 336 (347)
T ss_pred eecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhh
Confidence 7899999999999999999999999999999999999999999887665444
No 63
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=75.73 E-value=4.1 Score=32.71 Aligned_cols=34 Identities=3% Similarity=0.152 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHH
Q 034574 14 QYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLF 47 (90)
Q Consensus 14 eiltI~iSv~iFge~lT~lni~Gl~iii~GVvly 47 (90)
-++-.+.|+++.||.+|+.+++|++.++++.+.-
T Consensus 247 Pa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~ 280 (292)
T COG5006 247 PALAALSGLIFLGETLTLIQWLAIAAVIAASAGS 280 (292)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence 3566788999999999999999999999988744
No 64
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=74.16 E-value=2.7 Score=34.15 Aligned_cols=40 Identities=25% Similarity=0.430 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHh
Q 034574 12 LLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 12 ~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K 51 (90)
++--+-.++|+..|..|+|+.-++|-++.+.|-++|.-..
T Consensus 277 lRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~ 316 (330)
T KOG1583|consen 277 LRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVW 316 (330)
T ss_pred HHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667899999999999999999999999999996544
No 65
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=72.08 E-value=0.58 Score=37.85 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhHH
Q 034574 11 ILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 11 I~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~~ 53 (90)
.....++.++|+++.+-+--++++.|.++|+.||+.......+
T Consensus 112 cwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~ 154 (336)
T KOG2766|consen 112 CWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVH 154 (336)
T ss_pred HhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeec
Confidence 3567789999999999999999999999999999998777654
No 66
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=70.52 E-value=4.5 Score=31.58 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcC--ccch----hhhhHHHHHHhHHHHHhHHh
Q 034574 13 LQYVNVQVAVFYFHD--EFTW----LKGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 13 KeiltI~iSv~iFge--~lT~----lni~Gl~iii~GVvlyn~~K 51 (90)
=+..+++-|..+|+| .+++ ....|+.++++||.+.+..|
T Consensus 250 ~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~ 294 (300)
T PF05653_consen 250 FTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSK 294 (300)
T ss_pred HHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccC
Confidence 356788899999997 4666 45678899999999986655
No 67
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=69.23 E-value=2.7 Score=32.65 Aligned_cols=26 Identities=27% Similarity=0.535 Sum_probs=22.1
Q ss_pred cchhhhhHHHHHHhHHHHHhHHhHHH
Q 034574 29 FTWLKGFGLFTILVGVSLFNWYKYQK 54 (90)
Q Consensus 29 lT~lni~Gl~iii~GVvlyn~~K~~~ 54 (90)
-.++|.+|++++++|.++|-.-|...
T Consensus 114 ~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 114 SPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hhHHHHHHHHHHHHHHHheeeecCCC
Confidence 45789999999999999998877643
No 68
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=67.75 E-value=5.7 Score=31.19 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCccchh----hhhHHHHHHhHHHHHhHHhH
Q 034574 15 YVNVQVAVFYFHDEFTWL----KGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 15 iltI~iSv~iFge~lT~l----ni~Gl~iii~GVvlyn~~K~ 52 (90)
+.+.++++++|||-=+.. -+++++++++|+++-.+.+.
T Consensus 84 vg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~ 125 (269)
T PF06800_consen 84 VGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDK 125 (269)
T ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccc
Confidence 568899999999954432 35578899999988765543
No 69
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=65.74 E-value=6 Score=32.51 Aligned_cols=37 Identities=8% Similarity=0.179 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHh
Q 034574 15 YVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 15 iltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K 51 (90)
+.+-++|+.+.+.+++..+|+|+..+++|++.+-...
T Consensus 124 IFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d 160 (372)
T KOG3912|consen 124 IFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLD 160 (372)
T ss_pred hhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeee
Confidence 4566788999999999999999999999999876554
No 70
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=63.22 E-value=18 Score=29.08 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=35.6
Q ss_pred hhHhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhHH
Q 034574 8 SQRILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 8 VaGI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~~ 53 (90)
..|-+--....+.|.++|++|.+...++.+.+=+..-++|.+.|-+
T Consensus 255 MvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~ 300 (309)
T COG5070 255 MVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSK 300 (309)
T ss_pred HHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556677888999999999999998888777777777776654
No 71
>PF13755 Sensor_TM1: Sensor N-terminal transmembrane domain
Probab=63.01 E-value=7.5 Score=25.61 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=19.2
Q ss_pred hhhhhHHHHHHhHHHHHhHHh
Q 034574 31 WLKGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 31 ~lni~Gl~iii~GVvlyn~~K 51 (90)
..|++++++.++|+.+.|-++
T Consensus 20 ~~Nl~aL~vLv~G~LyLn~~R 40 (79)
T PF13755_consen 20 AFNLLALAVLVGGILYLNQYR 40 (79)
T ss_pred HHHHHHHHHHHHHHHhhhHHH
Confidence 369999999999999999887
No 72
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=59.76 E-value=8.9 Score=28.97 Aligned_cols=34 Identities=12% Similarity=-0.029 Sum_probs=26.7
Q ss_pred hhhhHhHHHHHHHHHHHHHhcCccchhhhhHHHH
Q 034574 6 KDSQRILLQYVNVQVAVFYFHDEFTWLKGFGLFT 39 (90)
Q Consensus 6 ~~VaGI~KeiltI~iSv~iFge~lT~lni~Gl~i 39 (90)
|..+--+--+++.++|+++|+.++|+..++|.++
T Consensus 210 K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 210 KGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 3344445567889999999999999999888754
No 73
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=59.01 E-value=12 Score=25.98 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=18.0
Q ss_pred CccchhhhhHHHHHHhHHHH
Q 034574 27 DEFTWLKGFGLFTILVGVSL 46 (90)
Q Consensus 27 e~lT~lni~Gl~iii~GVvl 46 (90)
.++++.+++|++++++|+++
T Consensus 119 ~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 119 RPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred CCCCHHHHHHHHHHHHHHhC
Confidence 57999999999999999974
No 74
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=58.53 E-value=26 Score=24.75 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=12.1
Q ss_pred hhhhHHHHHHhHHHHHhHHh
Q 034574 32 LKGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 32 lni~Gl~iii~GVvlyn~~K 51 (90)
..++|++++..|++++...-
T Consensus 38 s~~lg~~~lAlg~vL~~~g~ 57 (191)
T PF04156_consen 38 SFILGIALLALGVVLLSLGL 57 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666665544
No 75
>PRK02935 hypothetical protein; Provisional
Probab=57.05 E-value=25 Score=24.65 Aligned_cols=41 Identities=10% Similarity=0.489 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhcCc---cchhhhhHHHHHHhHHHHHhHHhHH
Q 034574 12 LLQYVNVQVAVFYFHDE---FTWLKGFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 12 ~KeiltI~iSv~iFge~---lT~lni~Gl~iii~GVvlyn~~K~~ 53 (90)
+-..++..+| ++|+++ ++...++|++.++++.++|-|.-.-
T Consensus 21 fiG~~vMy~G-iff~~~~~~m~ifm~~G~l~~l~S~vvYFwiGml 64 (110)
T PRK02935 21 FIGFIVMYLG-IFFRESIIIMTIFMLLGFLAVIASTVVYFWIGML 64 (110)
T ss_pred HHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445566667 556664 5667889999999999999887654
No 76
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=55.39 E-value=8.2 Score=31.39 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=24.5
Q ss_pred HHhcCccchhhhhHHHHHHhHHHHHhH
Q 034574 23 FYFHDEFTWLKGFGLFTILVGVSLFNW 49 (90)
Q Consensus 23 ~iFge~lT~lni~Gl~iii~GVvlyn~ 49 (90)
..||=++.|+-.+-++.++.|.++|..
T Consensus 273 ~~FgYhv~wLY~laF~~i~~GliiYs~ 299 (336)
T KOG2766|consen 273 RTFGYHVDWLYFLAFATIATGLIIYST 299 (336)
T ss_pred HHHhcchhhhhHHHHHHHHHhhEEeec
Confidence 678889999999999999999999943
No 77
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=53.57 E-value=15 Score=24.33 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=20.5
Q ss_pred ccchhhhhHHHHHHhHHHHHhHHh
Q 034574 28 EFTWLKGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 28 ~lT~lni~Gl~iii~GVvlyn~~K 51 (90)
.++|.+++|++++++|+.+|...+
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~ 27 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRF 27 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999996544
No 78
>PRK02237 hypothetical protein; Provisional
Probab=53.22 E-value=23 Score=24.72 Aligned_cols=32 Identities=13% Similarity=-0.057 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCccchhhhhHHHHHHhHHHHH
Q 034574 16 VNVQVAVFYFHDEFTWLKGFGLFTILVGVSLF 47 (90)
Q Consensus 16 ltI~iSv~iFge~lT~lni~Gl~iii~GVvly 47 (90)
+-++++.++.|.+.+..-++|-++|++|+.+.
T Consensus 72 ~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI 103 (109)
T PRK02237 72 GSLLWLWVVDGVRPDRWDWIGAAICLVGMAVI 103 (109)
T ss_pred HHHHHHHHhcCcCCChhHHHhHHHHHHhHHHh
Confidence 34577888888889999999999999999765
No 79
>PF13994 PgaD: PgaD-like protein
Probab=51.76 E-value=19 Score=25.01 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=20.1
Q ss_pred cchhhhhHHHHHHhHHHHHhHHhHHHHHhc
Q 034574 29 FTWLKGFGLFTILVGVSLFNWYKYQKLQAG 58 (90)
Q Consensus 29 lT~lni~Gl~iii~GVvlyn~~K~~~~~~~ 58 (90)
+..+..-.+++++.++++.-|.+|.+.+-.
T Consensus 61 ~~~l~~y~~i~~~~a~~Li~Wa~yn~~Rf~ 90 (138)
T PF13994_consen 61 LNTLQIYLLIALVNAVILILWAKYNRLRFR 90 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455566777788888888888765433
No 80
>PRK10746 putative transport protein YifK; Provisional
Probab=50.81 E-value=32 Score=27.74 Aligned_cols=27 Identities=7% Similarity=0.139 Sum_probs=20.6
Q ss_pred hhhhHHHHHHhHHHHHhHHhHHHHHhc
Q 034574 32 LKGFGLFTILVGVSLFNWYKYQKLQAG 58 (90)
Q Consensus 32 lni~Gl~iii~GVvlyn~~K~~~~~~~ 58 (90)
..+.|+.+++.+++.|-.+|+.++++-
T Consensus 430 ~~~~~~~~~~~~~~~y~~~~~~~~~~~ 456 (461)
T PRK10746 430 SLFVGIIFLLAVTLIYKVFGLNRHGKA 456 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcch
Confidence 567789999999999988887654433
No 81
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=49.83 E-value=24 Score=24.59 Aligned_cols=33 Identities=15% Similarity=0.033 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCccchhhhhHHHHHHhHHHHH
Q 034574 15 YVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLF 47 (90)
Q Consensus 15 iltI~iSv~iFge~lT~lni~Gl~iii~GVvly 47 (90)
++-++++.++-|.+.+..-++|-++|++|+...
T Consensus 69 ~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI 101 (107)
T PF02694_consen 69 VASLLWGWLVDGVRPDRWDWIGAAICLVGVAII 101 (107)
T ss_pred HHHHHHHhhhcCcCCChHHHHhHHHHHHhHHhe
Confidence 455677788888888889999999999999865
No 82
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=49.38 E-value=26 Score=24.22 Aligned_cols=14 Identities=43% Similarity=0.804 Sum_probs=7.4
Q ss_pred hhHHHHHHhHHHHH
Q 034574 34 GFGLFTILVGVSLF 47 (90)
Q Consensus 34 i~Gl~iii~GVvly 47 (90)
++|.+++++|++++
T Consensus 52 i~G~~li~~g~l~~ 65 (115)
T PF05915_consen 52 IFGTVLIIIGLLLF 65 (115)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555554443
No 83
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=49.22 E-value=19 Score=25.78 Aligned_cols=41 Identities=12% Similarity=-0.070 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhHH
Q 034574 13 LQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 13 KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~~ 53 (90)
|-+.+++.+..+++.+.+..+++..+++..|++...+.+.+
T Consensus 14 ~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q 54 (222)
T TIGR00803 14 NLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQ 54 (222)
T ss_pred chHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHH
Confidence 44667788888999999999999999999999988777754
No 84
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=49.19 E-value=24 Score=29.83 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCccchhhhhHHHHHHhHHHHH
Q 034574 16 VNVQVAVFYFHDEFTWLKGFGLFTILVGVSLF 47 (90)
Q Consensus 16 ltI~iSv~iFge~lT~lni~Gl~iii~GVvly 47 (90)
-++.+-..++|-.+-+.|+.|++++++|++++
T Consensus 264 G~i~LlL~f~g~~~~~~~~~gllLiilG~iLi 295 (436)
T COG1030 264 GAILLLLGFYGLLFLGINWAGLLLIILGAILI 295 (436)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence 34444456666667777778888888887776
No 85
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=45.55 E-value=42 Score=19.28 Aligned_cols=16 Identities=13% Similarity=0.621 Sum_probs=11.0
Q ss_pred HHHHHhHHHHHhHHhH
Q 034574 37 LFTILVGVSLFNWYKY 52 (90)
Q Consensus 37 l~iii~GVvlyn~~K~ 52 (90)
++++++|++++.+.+-
T Consensus 18 ~~~~F~gi~~w~~~~~ 33 (49)
T PF05545_consen 18 FFVFFIGIVIWAYRPR 33 (49)
T ss_pred HHHHHHHHHHHHHccc
Confidence 4566778888877554
No 86
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.39 E-value=47 Score=24.13 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=20.5
Q ss_pred CccchhhhhHHHHHHhHHHHHhHHh
Q 034574 27 DEFTWLKGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 27 e~lT~lni~Gl~iii~GVvlyn~~K 51 (90)
-++++.+++|++++++|+++....+
T Consensus 124 ~~~~~~r~lgi~L~l~gil~~~~~~ 148 (150)
T COG3238 124 RPLNLPRILGILLVLAGILLARRFG 148 (150)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcccc
Confidence 3699999999999999977765543
No 87
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=45.38 E-value=29 Score=19.54 Aligned_cols=19 Identities=32% Similarity=0.642 Sum_probs=15.1
Q ss_pred HHHHHhHHHHHhHHhHHHH
Q 034574 37 LFTILVGVSLFNWYKYQKL 55 (90)
Q Consensus 37 l~iii~GVvlyn~~K~~~~ 55 (90)
+.+++.|..++.+-||++.
T Consensus 6 i~L~l~ga~f~~fKKyQ~~ 24 (33)
T PF10855_consen 6 IILILGGAAFYGFKKYQNH 24 (33)
T ss_pred ehhhhhhHHHHHHHHHHHH
Confidence 4578889999988888753
No 88
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=44.64 E-value=10 Score=23.84 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=11.1
Q ss_pred HHHHHHhHHHHHhHHhH
Q 034574 36 GLFTILVGVSLFNWYKY 52 (90)
Q Consensus 36 Gl~iii~GVvlyn~~K~ 52 (90)
=+.+++.||+++.+.+-
T Consensus 17 ~~~l~fiavi~~ayr~~ 33 (60)
T COG4736 17 AFTLFFIAVIYFAYRPG 33 (60)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 34566778888766554
No 89
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=42.35 E-value=47 Score=24.68 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=16.9
Q ss_pred hhHHHHHHhHHHHHhHHhH
Q 034574 34 GFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 34 i~Gl~iii~GVvlyn~~K~ 52 (90)
.+|++++|-.++.||+.+-
T Consensus 171 A~GL~vAIPAvi~yn~l~r 189 (216)
T COG0811 171 AIGLFVAIPAVVAYNVLRR 189 (216)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999874
No 90
>PHA03049 IMV membrane protein; Provisional
Probab=41.35 E-value=41 Score=21.78 Aligned_cols=20 Identities=10% Similarity=0.313 Sum_probs=15.8
Q ss_pred hhhHHHHHHhHHHHHhHHhH
Q 034574 33 KGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 33 ni~Gl~iii~GVvlyn~~K~ 52 (90)
-++++.+++.|.++|..|+-
T Consensus 6 ~l~iICVaIi~lIvYgiYnk 25 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNK 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 36788888899999877764
No 91
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=41.18 E-value=25 Score=22.74 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=16.5
Q ss_pred hhhHHHHHHhHHHHHhHHhH
Q 034574 33 KGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 33 ni~Gl~iii~GVvlyn~~K~ 52 (90)
-++|+.+++.|.++|..|+-
T Consensus 6 iLi~ICVaii~lIlY~iYnr 25 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNR 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 36788999999999988764
No 92
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=40.40 E-value=24 Score=27.12 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=18.7
Q ss_pred cchhhhhHHHHHHhHHHHHhHH
Q 034574 29 FTWLKGFGLFTILVGVSLFNWY 50 (90)
Q Consensus 29 lT~lni~Gl~iii~GVvlyn~~ 50 (90)
+|..+++.++++++|++++.+.
T Consensus 235 ls~~Q~~sl~~i~~g~~~~~~~ 256 (269)
T PRK12437 235 LRIAQVISIPLIIIGIILIIYR 256 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999887543
No 93
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=40.04 E-value=45 Score=22.66 Aligned_cols=21 Identities=10% Similarity=0.040 Sum_probs=14.2
Q ss_pred hhHHHHHHhHHHHHhHHhHHH
Q 034574 34 GFGLFTILVGVSLFNWYKYQK 54 (90)
Q Consensus 34 i~Gl~iii~GVvlyn~~K~~~ 54 (90)
++.++|+|++.+++|..|.++
T Consensus 9 i~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 9 IVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 456667777777777766643
No 94
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=39.91 E-value=76 Score=19.23 Aligned_cols=29 Identities=17% Similarity=0.424 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhH
Q 034574 14 QYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 14 eiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~ 52 (90)
.|+|.++|+++. +|+ ++-+|...|..-|.
T Consensus 3 ~wlt~iFsvvIi---------l~I-f~~iGl~IyQkikq 31 (49)
T PF11044_consen 3 TWLTTIFSVVII---------LGI-FAWIGLSIYQKIKQ 31 (49)
T ss_pred hHHHHHHHHHHH---------HHH-HHHHHHHHHHHHHH
Confidence 467777777642 232 23356666655443
No 95
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=39.86 E-value=46 Score=22.10 Aligned_cols=19 Identities=21% Similarity=0.128 Sum_probs=13.2
Q ss_pred chhhhHhHHHHHHHHHHHHH
Q 034574 5 YKDSQRILLQYVNVQVAVFY 24 (90)
Q Consensus 5 ~~~VaGI~KeiltI~iSv~i 24 (90)
-|+..|| ||+.+++.+++.
T Consensus 42 KKta~gi-kev~l~l~ail~ 60 (79)
T PF15168_consen 42 KKTAIGI-KEVALVLAAILV 60 (79)
T ss_pred Hhhhhhh-HHHHHHHHHHHH
Confidence 3566676 999888766653
No 96
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=39.05 E-value=47 Score=22.15 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=13.0
Q ss_pred hhHHHHHHhHHHHHhHHhHHHHH
Q 034574 34 GFGLFTILVGVSLFNWYKYQKLQ 56 (90)
Q Consensus 34 i~Gl~iii~GVvlyn~~K~~~~~ 56 (90)
++|++.++++++.|-++|..+.+
T Consensus 7 v~~~~~v~~~i~~y~~~k~~ka~ 29 (87)
T PF10883_consen 7 VGGVGAVVALILAYLWWKVKKAK 29 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666655533
No 97
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.92 E-value=10 Score=31.03 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhH
Q 034574 12 LLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 12 ~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~ 52 (90)
+.-+..+++|.++.+|++++.-.+|.++|++|=.+...+..
T Consensus 99 lsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP 139 (335)
T KOG2922|consen 99 LSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAP 139 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecC
Confidence 44456788999999999999999999999999776655544
No 98
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.79 E-value=51 Score=24.05 Aligned_cols=32 Identities=22% Similarity=0.516 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHH
Q 034574 14 QYVNVQVAVFYFHDEFTWLKGFGLFTILVGVS 45 (90)
Q Consensus 14 eiltI~iSv~iFge~lT~lni~Gl~iii~GVv 45 (90)
-.+.+++|+++=+-..+.++++|+.+.+.||+
T Consensus 76 s~vLil~g~~la~t~~~~i~~ig~~l~li~il 107 (143)
T COG3296 76 SFVLILAGVFLAATDISFIIIIGFFLTLIGIL 107 (143)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 35567778888888889999999999998888
No 99
>TIGR02797 exbB tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.
Probab=36.74 E-value=67 Score=23.74 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=17.5
Q ss_pred hhHHHHHHhHHHHHhHHhHH
Q 034574 34 GFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 34 i~Gl~iii~GVvlyn~~K~~ 53 (90)
..|+++.|-.++.||++.-+
T Consensus 171 A~GL~VAIPAli~yn~f~~r 190 (211)
T TIGR02797 171 AIGLVAAIPAVVIYNVFARS 190 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999998754
No 100
>PRK15015 carbon starvation protein A; Provisional
Probab=36.70 E-value=74 Score=28.58 Aligned_cols=56 Identities=11% Similarity=-0.025 Sum_probs=35.5
Q ss_pred cCccchhhhhHHHHHHhHHHHHhHHhHHHHHhcccccCCCCCCccCCCccceEecc
Q 034574 26 HDEFTWLKGFGLFTILVGVSLFNWYKYQKLQAGHANEDGMLGSRETNASAKYVILE 81 (90)
Q Consensus 26 ge~lT~lni~Gl~iii~GVvlyn~~K~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 81 (90)
||+++.+-++=.++|+.-+.+.-|.||-..|--+...+..+|++..++...||+-|
T Consensus 29 ge~mnal~lv~aa~~~y~iaYrfYgr~ia~kv~~lD~~r~TPA~~~~DG~DYvPt~ 84 (701)
T PRK15015 29 GEQINALWIVVASVCIYLIAYRFYGLYIAKNVLAVDPTRMTPAVRHNDGLDYVPTD 84 (701)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceECCCCCCcCcCC
Confidence 57877665555555555555555556544444445555668888888888888754
No 101
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=36.48 E-value=57 Score=23.00 Aligned_cols=42 Identities=14% Similarity=0.432 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhcCc--cchhhhhHHHHHHhHHHHHhHHhHH
Q 034574 12 LLQYVNVQVAVFYFHDE--FTWLKGFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 12 ~KeiltI~iSv~iFge~--lT~lni~Gl~iii~GVvlyn~~K~~ 53 (90)
+--+++..+|++|-+.+ ++...++|+..++++.++|-|.-.-
T Consensus 20 f~g~~vmy~gi~f~~~~~im~ifmllG~L~~l~S~~VYfwIGml 63 (114)
T PF11023_consen 20 FIGMIVMYIGIFFKASPIIMVIFMLLGLLAILASTAVYFWIGML 63 (114)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33445555664443332 5667889999999999999887653
No 102
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.20 E-value=30 Score=30.57 Aligned_cols=23 Identities=13% Similarity=0.335 Sum_probs=20.3
Q ss_pred cchhhhhHHHHHHhHHHHHhHHh
Q 034574 29 FTWLKGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 29 lT~lni~Gl~iii~GVvlyn~~K 51 (90)
++.+|-+++++.+.|++..-..|
T Consensus 267 fSIiNSlvIVlfLSgiv~mI~lR 289 (628)
T KOG1278|consen 267 FSIINSLVIVLFLSGIVAMIMLR 289 (628)
T ss_pred EehhhhHHHHHHHHHHHHHHHHH
Confidence 57789999999999999988777
No 103
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=36.05 E-value=19 Score=28.54 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHH
Q 034574 14 QYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWY 50 (90)
Q Consensus 14 eiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~ 50 (90)
-+.+-++++.+.||++...+++-.++++.||+...|.
T Consensus 90 aAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~ 126 (290)
T KOG4314|consen 90 AAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA 126 (290)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec
Confidence 3567789999999999999999999999999988643
No 104
>TIGR02796 tolQ TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species
Probab=35.96 E-value=70 Score=23.75 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=17.4
Q ss_pred hhHHHHHHhHHHHHhHHhHH
Q 034574 34 GFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 34 i~Gl~iii~GVvlyn~~K~~ 53 (90)
..|+++.|-.++.||+++-+
T Consensus 175 a~GL~vAIPali~yn~f~~~ 194 (215)
T TIGR02796 175 AIGLFAAIPAVIAYNKLSTQ 194 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999998743
No 105
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=35.42 E-value=93 Score=23.26 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=34.2
Q ss_pred cchhhhHhHHHHHHHHHHHHHhcC----------ccchhhhhHHHHHHhHHHHH
Q 034574 4 QYKDSQRILLQYVNVQVAVFYFHD----------EFTWLKGFGLFTILVGVSLF 47 (90)
Q Consensus 4 ~~~~VaGI~KeiltI~iSv~iFge----------~lT~lni~Gl~iii~GVvly 47 (90)
.|..+++|+-.++...+++.+|.. .|.|+.+.|++.+.+|.+.|
T Consensus 39 r~~~~~si~t~~~g~~~g~~yl~~~~~D~~~~I~GlDP~~~~g~~t~a~g~lG~ 92 (173)
T PF08566_consen 39 RINLVSSIPTGLLGSSAGWAYLSTIEIDPTQQIMGLDPFMVYGLATLACGALGW 92 (173)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHHHHHHHHHH
Confidence 356688888899999999888873 35677788888888887755
No 106
>PRK10801 colicin uptake protein TolQ; Provisional
Probab=34.76 E-value=73 Score=24.02 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=17.3
Q ss_pred hhHHHHHHhHHHHHhHHhHH
Q 034574 34 GFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 34 i~Gl~iii~GVvlyn~~K~~ 53 (90)
..|+++.|-.++.||++.-+
T Consensus 176 a~GL~vAIPAli~yN~f~~r 195 (227)
T PRK10801 176 AIGLFAAIPAVMAYNRLNQR 195 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56999999999999998743
No 107
>PRK13499 rhamnose-proton symporter; Provisional
Probab=34.75 E-value=61 Score=26.29 Aligned_cols=35 Identities=14% Similarity=0.266 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcC---ccc----hhhhhHHHHHHhHHHHHhH
Q 034574 15 YVNVQVAVFYFHD---EFT----WLKGFGLFTILVGVSLFNW 49 (90)
Q Consensus 15 iltI~iSv~iFge---~lT----~lni~Gl~iii~GVvlyn~ 49 (90)
++..++++++||| -++ ..-++|++++++||++-.+
T Consensus 112 v~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 112 IVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888885 122 3467899999999998866
No 108
>PF09163 Form-deh_trans: Formate dehydrogenase N, transmembrane; InterPro: IPR015246 The transmembrane domain of the beta subunit of formate dehydrogenase consists of a single transmembrane helix. This domain acts as a transmembrane anchor, allowing the conduction of electrons within the protein []. ; PDB: 1KQG_B 1KQF_B.
Probab=34.47 E-value=53 Score=19.40 Aligned_cols=28 Identities=11% Similarity=0.008 Sum_probs=23.8
Q ss_pred HHHHHhcCccchhhhhHHHHHHhHHHHH
Q 034574 20 VAVFYFHDEFTWLKGFGLFTILVGVSLF 47 (90)
Q Consensus 20 iSv~iFge~lT~lni~Gl~iii~GVvly 47 (90)
.++-++++.+-++..+|++.+++|.+++
T Consensus 3 ~~V~lWKg~~Kpl~~~~~~~~~~~~~~H 30 (44)
T PF09163_consen 3 PSVTLWKGVLKPLGAAGMGATAAAGFFH 30 (44)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999998876
No 109
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=32.74 E-value=58 Score=19.66 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=20.2
Q ss_pred ccchhhhhHHHHHHhHHHHHhHHhHHH
Q 034574 28 EFTWLKGFGLFTILVGVSLFNWYKYQK 54 (90)
Q Consensus 28 ~lT~lni~Gl~iii~GVvlyn~~K~~~ 54 (90)
+.|..-++|..++..|.+.|+.+.+.+
T Consensus 15 R~tV~~Lig~T~~~g~~~~~~~y~~~~ 41 (59)
T PF14880_consen 15 RTTVLGLIGFTVYGGGLTVYTVYSYFK 41 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566788888888888888877654
No 110
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=32.36 E-value=16 Score=29.62 Aligned_cols=35 Identities=29% Similarity=0.549 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHH
Q 034574 13 LQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLF 47 (90)
Q Consensus 13 KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvly 47 (90)
|-+=+.++|+++-+.+-.|.+..=..+|++||+++
T Consensus 121 KPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValF 155 (337)
T KOG1580|consen 121 KPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALF 155 (337)
T ss_pred CCcceeeeehhhhcccccHHHHHHHHHHHHHHHHh
Confidence 45567789999999999999999999999999998
No 111
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=32.31 E-value=35 Score=27.96 Aligned_cols=39 Identities=13% Similarity=0.084 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhHH
Q 034574 15 YVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 15 iltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~~ 53 (90)
+...++-+++||+.-|+..+.|+++++...++....|+.
T Consensus 291 vfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kwa 329 (346)
T KOG4510|consen 291 VFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKWA 329 (346)
T ss_pred HHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHHh
Confidence 445677889999999999999999999999999888875
No 112
>PRK01637 hypothetical protein; Reviewed
Probab=31.57 E-value=2e+02 Score=21.90 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=17.9
Q ss_pred hhhhhHHHHHHhHHHHHhHHhHHHHH
Q 034574 31 WLKGFGLFTILVGVSLFNWYKYQKLQ 56 (90)
Q Consensus 31 ~lni~Gl~iii~GVvlyn~~K~~~~~ 56 (90)
|+.+.++++.+.+.+...+.++++.+
T Consensus 248 Wlyl~~~ilL~Gaelna~~~~~~~~~ 273 (286)
T PRK01637 248 WVYLSWCIVLLGAEITATLGEYRKLK 273 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55577888888887777666665444
No 113
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=31.52 E-value=89 Score=25.30 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=29.8
Q ss_pred cchhhhHhHHHHHHHHHHHHHhc--Cccchhhhh--HHHHHHhHHHH
Q 034574 4 QYKDSQRILLQYVNVQVAVFYFH--DEFTWLKGF--GLFTILVGVSL 46 (90)
Q Consensus 4 ~~~~VaGI~KeiltI~iSv~iFg--e~lT~lni~--Gl~iii~GVvl 46 (90)
..|.|.|.++.++++.+...+++ .|+|+.+-+ |+.+++.|.+.
T Consensus 208 PnKTveGl~GGilt~~~~~~~l~~lTp~~~lqa~~~~~~I~l~GF~G 254 (303)
T COG4589 208 PNKTVEGLIGGILTTMIASAILGLLTPLNTLQALLAGLLIGLSGFCG 254 (303)
T ss_pred CcchHHHHhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhh
Confidence 35788999999988877666666 566666544 44677776653
No 114
>PRK13664 hypothetical protein; Provisional
Probab=31.46 E-value=85 Score=19.92 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=17.5
Q ss_pred HHHHHhHHHHHhHHhHHHHHhcc--cccCCCCCCccCC
Q 034574 37 LFTILVGVSLFNWYKYQKLQAGH--ANEDGMLGSRETN 72 (90)
Q Consensus 37 l~iii~GVvlyn~~K~~~~~~~~--~~~~~~~~~~~~~ 72 (90)
+.++++||++=..-...+..+.+ .+....++-|-+|
T Consensus 12 ill~lvG~i~N~iK~l~RvD~Kkfl~nkp~LPPHRD~N 49 (62)
T PRK13664 12 VLVFLVGVLLNVIKDLKRVDHKKFLANKPELPPHRDFN 49 (62)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhcCCCCCCCCcccc
Confidence 45666777654333333322221 4455566666555
No 115
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=31.38 E-value=1.1e+02 Score=27.44 Aligned_cols=43 Identities=12% Similarity=0.342 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcCccchhhhhHHHHHHh-----HHHHHhHHhHHHH
Q 034574 13 LQYVNVQVAVFYFHDEFTWLKGFGLFTILV-----GVSLFNWYKYQKL 55 (90)
Q Consensus 13 KeiltI~iSv~iFge~lT~lni~Gl~iii~-----GVvlyn~~K~~~~ 55 (90)
=-++=.+++.++||-+|+..-++|+++.+. ||+++.+.+..+.
T Consensus 898 la~~G~~~~l~i~g~~l~~~s~iG~i~L~GIvVnNaIllvd~~~~~~~ 945 (1021)
T PF00873_consen 898 LALIGVLLGLFITGQPLSFMSLIGIIALIGIVVNNAILLVDFINELRK 945 (1021)
T ss_dssp HHHHHHHHHHHHTTBEBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhccccccccceehHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 344556788999999999999999876543 3445555554333
No 116
>PF13273 DUF4064: Protein of unknown function (DUF4064)
Probab=31.22 E-value=1.1e+02 Score=19.63 Aligned_cols=32 Identities=13% Similarity=0.238 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHH
Q 034574 11 ILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSL 46 (90)
Q Consensus 11 I~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvl 46 (90)
++--++.++.+.++-+. .+..|..++++|++.
T Consensus 66 ii~~il~iia~i~ikk~----~k~~Gil~Ii~aii~ 97 (100)
T PF13273_consen 66 IISSILGIIASILIKKN----PKLAGILFIIAAIIS 97 (100)
T ss_pred HHHHHHHHHHHHHHcCC----chhhhhhhhHHHHHH
Confidence 33344444444444441 135566666666553
No 117
>PRK12587 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=30.71 E-value=1.3e+02 Score=20.95 Aligned_cols=32 Identities=16% Similarity=0.406 Sum_probs=22.3
Q ss_pred HHHHHHHhcCccch------hhhhHHHHHHhHHHHHhH
Q 034574 18 VQVAVFYFHDEFTW------LKGFGLFTILVGVSLFNW 49 (90)
Q Consensus 18 I~iSv~iFge~lT~------lni~Gl~iii~GVvlyn~ 49 (90)
..+|.+=|.|..+. ...+|..+++.|+.+|..
T Consensus 24 gaiGllR~PD~y~RlHAatk~~TlG~~lil~g~~l~~~ 61 (118)
T PRK12587 24 AAIGLLRLEDVYSRAHAAGKASTLGAMSLLFGTFLYFI 61 (118)
T ss_pred HHHHHHhCCcHHHHhhhchhhhHhhHHHHHHHHHHHHh
Confidence 44566667776544 356788899999888754
No 118
>PRK10414 biopolymer transport protein ExbB; Provisional
Probab=30.70 E-value=92 Score=23.91 Aligned_cols=19 Identities=21% Similarity=0.490 Sum_probs=16.8
Q ss_pred hhHHHHHHhHHHHHhHHhH
Q 034574 34 GFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 34 i~Gl~iii~GVvlyn~~K~ 52 (90)
..|+++.|-+++.||++.-
T Consensus 182 a~GL~vAIPAliayn~f~~ 200 (244)
T PRK10414 182 AIGLVAAIPAVVIYNVFAR 200 (244)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999774
No 119
>KOG3269 consensus Predicted membrane protein [Function unknown]
Probab=30.37 E-value=99 Score=23.37 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=20.7
Q ss_pred HHHHHHHhcCccchhhhhHHHHHHh
Q 034574 18 VQVAVFYFHDEFTWLKGFGLFTILV 42 (90)
Q Consensus 18 I~iSv~iFge~lT~lni~Gl~iii~ 42 (90)
..+..+||...+|+.+++|+++..+
T Consensus 38 ~~v~~~f~~s~~T~~~wi~lv~s~l 62 (180)
T KOG3269|consen 38 FAVLRLFFYSSVTKTSWIGLVFSSL 62 (180)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHH
Confidence 4567889999999999999887654
No 120
>PF14851 FAM176: FAM176 family
Probab=30.18 E-value=1.5e+02 Score=21.64 Aligned_cols=14 Identities=21% Similarity=0.154 Sum_probs=8.6
Q ss_pred hhHHHHHHhHHHHH
Q 034574 34 GFGLFTILVGVSLF 47 (90)
Q Consensus 34 i~Gl~iii~GVvly 47 (90)
++|++++++=++.-
T Consensus 31 C~GLlLtLcllV~r 44 (153)
T PF14851_consen 31 CAGLLLTLCLLVIR 44 (153)
T ss_pred HHHHHHHHHHHHhh
Confidence 56777776666543
No 121
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=29.93 E-value=2e+02 Score=20.27 Aligned_cols=51 Identities=10% Similarity=0.216 Sum_probs=34.1
Q ss_pred cchhhhHhHHHHHHHHHHHHHhcCccch--hh-hhHHHH--HHhHHHHHhHHhHHH
Q 034574 4 QYKDSQRILLQYVNVQVAVFYFHDEFTW--LK-GFGLFT--ILVGVSLFNWYKYQK 54 (90)
Q Consensus 4 ~~~~VaGI~KeiltI~iSv~iFge~lT~--ln-i~Gl~i--ii~GVvlyn~~K~~~ 54 (90)
.++|....+-|.....+.+++++-.+++ .+ ..|..+ ++.|+.=|=+++|-+
T Consensus 55 r~gN~~AtiaD~~La~~~iW~~~~~~~~~~~~~~~~allsA~~i~v~E~fFH~yl~ 110 (136)
T PF10710_consen 55 RTGNIVATIADFGLAFLVIWLMGYILTGNYVSIAWAALLSAVLIGVGEYFFHRYLL 110 (136)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888999999999999999988776 22 233222 345555444556543
No 122
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=29.86 E-value=27 Score=25.25 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=15.7
Q ss_pred CCCCccCCCccceEec--cccccccCC
Q 034574 65 MLGSRETNASAKYVIL--EEIDDLDEG 89 (90)
Q Consensus 65 ~~~~~~~~~~~~y~~~--~~~~d~~~~ 89 (90)
--++|.++.++--..- ||+||||+.
T Consensus 123 yrp~rq~d~~p~~~~~~~dd~e~ed~~ 149 (150)
T PF06084_consen 123 YRPCRQNDNSPPIEPNGTDDEEDEDDD 149 (150)
T ss_pred CCcccccCCCCcccCCCCCcccccccC
Confidence 3677777777654444 666666653
No 123
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=29.69 E-value=1.2e+02 Score=23.32 Aligned_cols=40 Identities=15% Similarity=0.104 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhHH
Q 034574 14 QYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 14 eiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~~ 53 (90)
|=+++.++-++.+.+.+...++.|++++-+++++-.+++.
T Consensus 202 eR~~ls~~r~vL~nr~~R~~f~~Y~l~LH~lvf~~l~~~~ 241 (248)
T PF08172_consen 202 ERIFLSLTRFVLSNRTTRMLFFFYCLGLHLLVFFVLYYMS 241 (248)
T ss_pred HHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578889999999999999999999999999999888864
No 124
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=29.21 E-value=99 Score=21.13 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCccchh-----hhhHHHHHHhHHHHH
Q 034574 15 YVNVQVAVFYFHDEFTWL-----KGFGLFTILVGVSLF 47 (90)
Q Consensus 15 iltI~iSv~iFge~lT~l-----ni~Gl~iii~GVvly 47 (90)
++.++++.+-.++.++.. ...+++++++||.+.
T Consensus 19 ~~LLv~a~Lsin~~l~LP~~l~~~~aai~MIf~Gi~lM 56 (96)
T PF07214_consen 19 MILLVLAYLSINDYLSLPAPLSTPTAAIAMIFVGIGLM 56 (96)
T ss_pred HHHHHHHHHHHcccccCcccccCchHHHHHHHHHHHHH
Confidence 345667777788876543 345788888888764
No 125
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=28.95 E-value=97 Score=19.75 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=16.5
Q ss_pred HHHHHhHHHHHhHHhHHHHHhc--ccccCCCCCCccCC
Q 034574 37 LFTILVGVSLFNWYKYQKLQAG--HANEDGMLGSRETN 72 (90)
Q Consensus 37 l~iii~GVvlyn~~K~~~~~~~--~~~~~~~~~~~~~~ 72 (90)
+.++++|+++=..-...+..+. -.+....++-|-+|
T Consensus 11 iLl~lvG~i~n~iK~L~RvD~K~fL~nKP~lPPHRDnN 48 (63)
T PF13980_consen 11 ILLILVGMIINGIKELRRVDHKKFLDNKPELPPHRDNN 48 (63)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhcCCCCCCCCCccc
Confidence 4566667665433333322111 13444555555555
No 126
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.52 E-value=1.8e+02 Score=20.82 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=35.2
Q ss_pred cchhhhHhHHHHHHHHHHHHHhcCccc-hhhhhHHHHHHhHHHHHhHHhHHHH
Q 034574 4 QYKDSQRILLQYVNVQVAVFYFHDEFT-WLKGFGLFTILVGVSLFNWYKYQKL 55 (90)
Q Consensus 4 ~~~~VaGI~KeiltI~iSv~iFge~lT-~lni~Gl~iii~GVvlyn~~K~~~~ 55 (90)
+..+|.=-+|+++-+++|+++=--|++ .+-+++++.+-+||+..-+.++++.
T Consensus 40 ellDViyW~rQVi~l~lGviwGi~pL~G~l~iv~f~~issgIvy~y~~~~~~V 92 (129)
T KOG3415|consen 40 ELLDVIYWIRQVIGLILGVIWGIIPLVGFLGIVLFLGISSGIVYLYYANFLKV 92 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHhhhhHHHHHHHHHHhc
Confidence 344566667888888888764334665 4566777777788887777777653
No 127
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=28.24 E-value=1.2e+02 Score=22.72 Aligned_cols=37 Identities=19% Similarity=0.113 Sum_probs=27.6
Q ss_pred hhHhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHH
Q 034574 8 SQRILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVS 45 (90)
Q Consensus 8 VaGI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVv 45 (90)
+.++.=.++..++...+||-+++...++|+.+++ |++
T Consensus 128 ~~~ip~~l~~~~~~l~~~g~~ln~~sl~gli~~i-Gi~ 164 (246)
T TIGR00966 128 IVALVHDVIITVGVYSLFGIEVNLTTVAALLTII-GYS 164 (246)
T ss_pred HHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHH-HHh
Confidence 3456667777788888999999988888876654 444
No 128
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=27.92 E-value=23 Score=25.48 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=17.8
Q ss_pred hcCccchhhhhHHHHHHhHHHHHhHH
Q 034574 25 FHDEFTWLKGFGLFTILVGVSLFNWY 50 (90)
Q Consensus 25 Fge~lT~lni~Gl~iii~GVvlyn~~ 50 (90)
|+.+.+.++++|.++.-+|..+....
T Consensus 73 ~n~~~si~~~~G~vlLs~GLmlL~~~ 98 (129)
T PF15099_consen 73 FNSHGSIISIFGPVLLSLGLMLLACS 98 (129)
T ss_pred ecCCcchhhhehHHHHHHHHHHHHhh
Confidence 46667777787777777776665544
No 129
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=27.88 E-value=1.9e+02 Score=22.61 Aligned_cols=30 Identities=20% Similarity=0.187 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhHH
Q 034574 15 YVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 15 iltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~~ 53 (90)
++.|+|+++|+ +=-.+.+.-|++-|.-.|-
T Consensus 132 IClIIIAVLfL---------ICT~LfLSTVVLANKVS~L 161 (227)
T PF05399_consen 132 ICLIIIAVLFL---------ICTLLFLSTVVLANKVSSL 161 (227)
T ss_pred HHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 57788888864 5666777888888876543
No 130
>PRK13871 conjugal transfer protein TrbC; Provisional
Probab=27.23 E-value=1.4e+02 Score=21.50 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=19.3
Q ss_pred hhHhHHHHHH-HHHHHHHhcCccchh-hhhHHHHHHhHH
Q 034574 8 SQRILLQYVN-VQVAVFYFHDEFTWL-KGFGLFTILVGV 44 (90)
Q Consensus 8 VaGI~Keilt-I~iSv~iFge~lT~l-ni~Gl~iii~GV 44 (90)
||+.+--+.+ +.-..++||+.++.. .-+++++..+++
T Consensus 52 VA~~IavIaIivaG~~liFGg~~~gf~Rrl~~vVlg~~i 90 (135)
T PRK13871 52 VAGFIALAAVAIAGAMLIFGGELNDFARRLCYVALVGGV 90 (135)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHH
Confidence 3333333333 344568899887754 444444444444
No 131
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=27.00 E-value=29 Score=21.57 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=13.2
Q ss_pred hhhHHHHHHhHHHHHhH
Q 034574 33 KGFGLFTILVGVSLFNW 49 (90)
Q Consensus 33 ni~Gl~iii~GVvlyn~ 49 (90)
+++|+++++.|+++.-+
T Consensus 1 kiigi~Llv~GivLl~~ 17 (59)
T PF11381_consen 1 KIIGIALLVGGIVLLYF 17 (59)
T ss_pred CeeeehHHHHHHHHHHh
Confidence 46789999999887743
No 132
>PRK09697 protein secretion protein GspB; Provisional
Probab=26.90 E-value=47 Score=23.87 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=10.5
Q ss_pred hcCccchhhhhHHHHHHhHHHHH
Q 034574 25 FHDEFTWLKGFGLFTILVGVSLF 47 (90)
Q Consensus 25 Fge~lT~lni~Gl~iii~GVvly 47 (90)
|+++++. .+|++++++|++++
T Consensus 20 ~~~~~~~--TI~~Vi~L~~~~L~ 40 (139)
T PRK09697 20 FSRQKHS--TIIYVICLLLICLW 40 (139)
T ss_pred hhhhhcc--chHHHHHHHHHHHH
Confidence 4555443 34555555555544
No 133
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=26.66 E-value=84 Score=18.99 Aligned_cols=11 Identities=45% Similarity=0.537 Sum_probs=5.4
Q ss_pred cceEec-ccccc
Q 034574 75 AKYVIL-EEIDD 85 (90)
Q Consensus 75 ~~y~~~-~~~~d 85 (90)
+.+-+| ||+||
T Consensus 37 ~a~riL~Dd~~~ 48 (51)
T TIGR00847 37 AAWRILGDYDDD 48 (51)
T ss_pred HHHHHHcCcccc
Confidence 344566 44544
No 134
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=26.50 E-value=2.6e+02 Score=23.32 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=35.1
Q ss_pred hhhhHhHHHHHHHHHHHHHhcCccchhh--hhHHHHHHhHHHHHh------HHhHHHHHhc
Q 034574 6 KDSQRILLQYVNVQVAVFYFHDEFTWLK--GFGLFTILVGVSLFN------WYKYQKLQAG 58 (90)
Q Consensus 6 ~~VaGI~KeiltI~iSv~iFge~lT~ln--i~Gl~iii~GVvlyn------~~K~~~~~~~ 58 (90)
.++||++-.++-++.-...=+++-+..- +++.+++++-+++|+ ..||++.+.+
T Consensus 157 ~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~~lpf~~yy~~~~~ 217 (406)
T KOG1479|consen 157 QALAGTLTSLLRILTKAAFSDSRTSALIYFITSTVILLLCFVLYLVLPKLPFVRYYREKAG 217 (406)
T ss_pred chhHhHHHHHHHHHHHHhcCCCCceeehhHHHHHHHHHHHHHHHHHhhcchHHHHHhhhcc
Confidence 4688988888777776666556655443 455666777788888 5666654333
No 135
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=26.18 E-value=1.1e+02 Score=25.36 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=28.8
Q ss_pred HHHHHhHHHHHhHHhHHHHHhcccccCCCCCCccCCCccceEecc
Q 034574 37 LFTILVGVSLFNWYKYQKLQAGHANEDGMLGSRETNASAKYVILE 81 (90)
Q Consensus 37 l~iii~GVvlyn~~K~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 81 (90)
.++++.-+.+.-|.|+-+.+-++...+..+|+++.++--.||+.+
T Consensus 9 ~~~~~l~~~Y~~Yg~~l~~~~~~~d~~~~TPA~~~~DGvDYvP~~ 53 (376)
T PF02554_consen 9 ISLAILIIAYRFYGKFLEKKFGKLDDSRPTPAHTMNDGVDYVPTN 53 (376)
T ss_pred HHHHHHHHHHHHHHHHHHheeccCCCCCCCCeeECCCCCCCCCCc
Confidence 334444444445566655555556666778999999988888753
No 136
>PF15240 Pro-rich: Proline-rich
Probab=25.65 E-value=43 Score=25.16 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=14.5
Q ss_pred HHHHHhHHHHHhHHhHHHH
Q 034574 37 LFTILVGVSLFNWYKYQKL 55 (90)
Q Consensus 37 l~iii~GVvlyn~~K~~~~ 55 (90)
|++|++-|+|+.++..+..
T Consensus 1 MLlVLLSvALLALSSAQ~~ 19 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQST 19 (179)
T ss_pred ChhHHHHHHHHHhhhcccc
Confidence 5688888999988876543
No 137
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=25.49 E-value=1e+02 Score=22.15 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=12.7
Q ss_pred HhHHHHHhHHhHHHHHhccc
Q 034574 41 LVGVSLFNWYKYQKLQAGHA 60 (90)
Q Consensus 41 i~GVvlyn~~K~~~~~~~~~ 60 (90)
-+||++|-.|+..+.+.++.
T Consensus 90 tiGI~~f~lY~l~Ki~~~k~ 109 (152)
T PF15361_consen 90 TIGIVLFILYTLFKIKKKKD 109 (152)
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 36777777777766554433
No 138
>PHA03231 glycoprotein BALF4; Provisional
Probab=25.42 E-value=1.6e+02 Score=27.00 Aligned_cols=38 Identities=11% Similarity=0.042 Sum_probs=20.6
Q ss_pred hhHhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHH
Q 034574 8 SQRILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLF 47 (90)
Q Consensus 8 VaGI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvly 47 (90)
|+|.+..++.-++| ||..||..+-++.+++.++.++++
T Consensus 685 v~ga~~SiVsG~~s--Fl~NPFGg~~iillvia~vv~v~l 722 (829)
T PHA03231 685 VAGAVGSIVSGVIS--FLKNPFGGLAIGLLVIAVLVAVFL 722 (829)
T ss_pred HHHHHHHHHHHHHH--HhcCchHHHHHHHHHHHHhhhhhH
Confidence 34444444444443 568888876665555554444444
No 139
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=25.40 E-value=93 Score=28.30 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=25.6
Q ss_pred HhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHH
Q 034574 10 RILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVS 45 (90)
Q Consensus 10 GI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVv 45 (90)
-|.=-.+-.+++.+++|.+|+..-++|+++. +|++
T Consensus 897 tIPls~~G~~~~l~l~g~~l~~~sliGli~l-~Giv 931 (1040)
T PRK10503 897 TLPTAGVGALLALMIAGSELDVIAIIGIILL-IGIV 931 (1040)
T ss_pred HHHHHHHHHHHHHHHhCCCccHHHHHHHHHH-HHHH
Confidence 3444455667778899999999999898665 4554
No 140
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=25.15 E-value=45 Score=19.66 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=14.4
Q ss_pred HHHHHHhHHHHHhHHhHHH
Q 034574 36 GLFTILVGVSLFNWYKYQK 54 (90)
Q Consensus 36 Gl~iii~GVvlyn~~K~~~ 54 (90)
-++++++||++|.+.+-++
T Consensus 18 ~~~~~Figiv~wa~~p~~k 36 (48)
T cd01324 18 YLALFFLGVVVWAFRPGRK 36 (48)
T ss_pred HHHHHHHHHHHHHhCCCcc
Confidence 3578899999998876543
No 141
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=25.01 E-value=2e+02 Score=21.97 Aligned_cols=46 Identities=9% Similarity=0.080 Sum_probs=30.9
Q ss_pred hHhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhHHH
Q 034574 9 QRILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQK 54 (90)
Q Consensus 9 aGI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~~~ 54 (90)
.|.+.=++..+++.++.-..+.+.--...+++++|.++|-..|.++
T Consensus 151 ~aligLiiasvvn~Fl~s~~l~~~IS~lgvlifsgli~yDtq~I~~ 196 (233)
T COG0670 151 MALIGLIIASLVNIFLGSSALHLAISVLGVLIFSGLIAYDTQNIKR 196 (233)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777776666576665566677777888876666643
No 142
>KOG2443 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.93 E-value=1.2e+02 Score=25.30 Aligned_cols=33 Identities=15% Similarity=0.448 Sum_probs=22.6
Q ss_pred HHHHHHhcCccch--hhhhHHHHHHhHHHHHhHHhH
Q 034574 19 QVAVFYFHDEFTW--LKGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 19 ~iSv~iFge~lT~--lni~Gl~iii~GVvlyn~~K~ 52 (90)
.+.++++--+ .| .|++|+.+|+.||.......+
T Consensus 163 ~i~v~~ll~~-HWl~nN~lgms~~I~~I~~lrL~s~ 197 (362)
T KOG2443|consen 163 MIVVWYLLTK-HWLANNLLGMSFCIAGIEFLRLPSL 197 (362)
T ss_pred HHHHHHHhhh-HHHHHhHHHHHHHHHHHHHhcccch
Confidence 3334444333 45 499999999999998865554
No 143
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=24.91 E-value=1.3e+02 Score=23.81 Aligned_cols=21 Identities=10% Similarity=0.355 Sum_probs=16.4
Q ss_pred hHHHHHHhHHHHHhHHhHHHH
Q 034574 35 FGLFTILVGVSLFNWYKYQKL 55 (90)
Q Consensus 35 ~Gl~iii~GVvlyn~~K~~~~ 55 (90)
.|+++++.|+.+|-++|.++.
T Consensus 419 ~~~~~~~~g~~~y~~~~~~~~ 439 (445)
T PRK11357 419 CAVIVIATGLPAYAFWAKRSR 439 (445)
T ss_pred HHHHHHHHhhhHHhheechhh
Confidence 588899999998877766543
No 144
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=24.36 E-value=90 Score=24.38 Aligned_cols=9 Identities=33% Similarity=0.638 Sum_probs=5.9
Q ss_pred cccccccCC
Q 034574 81 EEIDDLDEG 89 (90)
Q Consensus 81 ~~~~d~~~~ 89 (90)
||+||.+|+
T Consensus 258 ~~~ed~~~~ 266 (267)
T PRK09757 258 NEEEDYSNG 266 (267)
T ss_pred ccccccccC
Confidence 666776664
No 145
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=24.24 E-value=79 Score=22.56 Aligned_cols=18 Identities=17% Similarity=0.049 Sum_probs=11.5
Q ss_pred hhHHHHHHhHHHHHhHHh
Q 034574 34 GFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 34 i~Gl~iii~GVvlyn~~K 51 (90)
++|.+++|+|++++...|
T Consensus 125 i~g~ll~i~~giy~~~r~ 142 (145)
T PF10661_consen 125 IGGILLAICGGIYVVLRK 142 (145)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346667777777665544
No 146
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=24.22 E-value=99 Score=20.22 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=10.2
Q ss_pred hhHHHHHHhHHHHHhH
Q 034574 34 GFGLFTILVGVSLFNW 49 (90)
Q Consensus 34 i~Gl~iii~GVvlyn~ 49 (90)
++|+++++.|+..+..
T Consensus 13 ~~g~~~~~~~~~~~~~ 28 (148)
T PF12158_consen 13 LIGLVLLIGGIFLYWR 28 (148)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5676666666666643
No 147
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=24.17 E-value=29 Score=27.07 Aligned_cols=57 Identities=23% Similarity=0.293 Sum_probs=35.6
Q ss_pred HHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhHHH-HHhcccccCCCCCCccCCCccceEe
Q 034574 19 QVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQK-LQAGHANEDGMLGSRETNASAKYVI 79 (90)
Q Consensus 19 ~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~~~-~~~~~~~~~~~~~~~~~~~~~~y~~ 79 (90)
....+.|.|-+ ++|+++.-.|=.++-.+|.+| -|+-|........||++.+++.=..
T Consensus 148 ~~~~~~~~D~~----fvgLM~~aSgyMV~~L~RH~q~VqhIhs~~~s~r~SpE~RAtktILl 205 (265)
T PF03402_consen 148 FATLLSFRDVL----FVGLMIWASGYMVFLLYRHHQQVQHIHSSSLSPRSSPETRATKTILL 205 (265)
T ss_pred hhhHHHhhHHH----HHHHHHhhhhhheeeeeecccccccCcCCCCCCCCChhHHHhCeEee
Confidence 33444455543 678888888866666667544 5566666666666777777665443
No 148
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=24.03 E-value=96 Score=23.74 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=14.6
Q ss_pred HHHHHHhcCccch------hhhhHHHHHHhHHHHH
Q 034574 19 QVAVFYFHDEFTW------LKGFGLFTILVGVSLF 47 (90)
Q Consensus 19 ~iSv~iFge~lT~------lni~Gl~iii~GVvly 47 (90)
.+|++=|.|.+|- ...+|+.++++|+++|
T Consensus 24 aIGLlRfPD~YtRLHAATKa~TLGv~LILlgv~l~ 58 (197)
T PRK12585 24 AIGVIRLPDVYTRTHAAGISNTFGVSLLLFATVGY 58 (197)
T ss_pred HHHHHhcCcHHHHhhccccchhhhHHHHHHHHHHH
Confidence 3455555554433 2345555555555544
No 149
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=23.87 E-value=2.4e+02 Score=19.08 Aligned_cols=40 Identities=15% Similarity=0.318 Sum_probs=23.7
Q ss_pred chhhhHhHHHHHHHHHHHHHhcC-ccc---hhhhhHHHHHHhHH
Q 034574 5 YKDSQRILLQYVNVQVAVFYFHD-EFT---WLKGFGLFTILVGV 44 (90)
Q Consensus 5 ~~~VaGI~KeiltI~iSv~iFge-~lT---~lni~Gl~iii~GV 44 (90)
|+.+.|++--++..+.-.+.+++ .+. +.+++.+++.++++
T Consensus 2 ~g~i~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 45 (163)
T PF13858_consen 2 YGLIFGLILILFFLLSYLLGMHDIKYPSNSWLGILSMVITIIFI 45 (163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccccccHhHHHHHHHHHHHHHHH
Confidence 56777887777666666666654 333 34444455555554
No 150
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=23.42 E-value=63 Score=21.63 Aligned_cols=46 Identities=11% Similarity=0.140 Sum_probs=25.4
Q ss_pred hHhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhHHHH
Q 034574 9 QRILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQKL 55 (90)
Q Consensus 9 aGI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~~~~ 55 (90)
.+++-+++..+...+=++.+.+.+-+++++ .+..+.++.+.+.++.
T Consensus 46 ~~ifP~~~~~vA~~lGi~~~~n~lf~~~i~-~ll~~~~~l~~~is~l 91 (115)
T PF10066_consen 46 LSIFPNILDWVAKLLGIGRPPNLLFYLGIL-FLLVIIFSLYVRISRL 91 (115)
T ss_pred HHhhhhHHHHHHHHHCCCchhHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 455556666666666666666665554433 3444555555555443
No 151
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.26 E-value=1.3e+02 Score=21.16 Aligned_cols=17 Identities=12% Similarity=0.252 Sum_probs=10.7
Q ss_pred hHHHHHHhHHHHHhHHh
Q 034574 35 FGLFTILVGVSLFNWYK 51 (90)
Q Consensus 35 ~Gl~iii~GVvlyn~~K 51 (90)
+|.+++.+|+.+....+
T Consensus 48 lg~vL~~~g~~~~~~~~ 64 (191)
T PF04156_consen 48 LGVVLLSLGLLCLLSKR 64 (191)
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 47777777776664443
No 152
>PF01024 Colicin: Colicin pore forming domain; InterPro: IPR000293 Colicins are plasmid-encoded polypeptide toxins produced by and active against Escherichia coli and closely related bacteria. Colicins are released into the environment to reduce competition from other bacterial strains. Colicins bind to outer membrane receptors, using them to translocate to the cytoplasm or cytoplasmic membrane, where they exert their cytotoxic effect, including depolarisation of the cytoplasmic membrane, DNase activity, RNase activity, or inhibition of murein synthesis. Channel-forming colicins (colicins A, B, E1, Ia, Ib, and N) are transmembrane proteins that depolarize the cytoplasmic membrane, leading to dissipation of cellular energy []. These colicins contain at least three domains: an N-terminal translocation domain responsible for movement across the outer membrane and periplasmic space; a central domain responsible for receptor recognition; and a C-terminal cytotoxic domain responsible for channel formation in the cytoplasmic membrane []. This entry represents the C-terminal cytotoxic domain, which has a globin-like fold with additional helices at either end.; GO: 0019835 cytolysis, 0050829 defense response to Gram-negative bacterium, 0016021 integral to membrane; PDB: 2I88_A 1CII_A 1RH1_A 1COL_B 1A87_A 3FEW_X.
Probab=22.69 E-value=1.3e+02 Score=22.75 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=13.9
Q ss_pred chhhhhHHHHHHhHHHHH
Q 034574 30 TWLKGFGLFTILVGVSLF 47 (90)
Q Consensus 30 T~lni~Gl~iii~GVvly 47 (90)
||+-++|++++++.|..|
T Consensus 157 t~igi~g~ail~a~v~s~ 174 (187)
T PF01024_consen 157 TPIGILGIAILMAVVGSL 174 (187)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 777888998877777655
No 153
>PF04549 CD47: CD47 transmembrane region; InterPro: IPR013147 This family represents the transmembrane region of CD47 leukocyte antigen [, ].
Probab=22.35 E-value=84 Score=23.12 Aligned_cols=40 Identities=10% Similarity=0.271 Sum_probs=32.4
Q ss_pred hhhHhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHH
Q 034574 7 DSQRILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSL 46 (90)
Q Consensus 7 ~VaGI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvl 46 (90)
-++|++=+++.+..+.+++....+..|..|+.++..-...
T Consensus 37 ~~~gl~~Tii~ivG~~l~ip~~~s~~~~~Gl~LI~i~~~i 76 (157)
T PF04549_consen 37 YVAGLWITIIVIVGQYLFIPGEYSYKNIYGLGLIVIPIFI 76 (157)
T ss_pred HHHHHHHHHHHHhhheeEecCCceEeeecceehHHHHHHH
Confidence 3678888888999999999999999988888877655443
No 154
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=22.33 E-value=1.4e+02 Score=17.95 Aligned_cols=24 Identities=13% Similarity=0.361 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHhcCccchhhh
Q 034574 11 ILLQYVNVQVAVFYFHDEFTWLKG 34 (90)
Q Consensus 11 I~KeiltI~iSv~iFge~lT~lni 34 (90)
+.--++.+.++.+++.++.-..-+
T Consensus 33 ~~~m~~~~~~s~~~~~~~~~~~~~ 56 (71)
T PF04304_consen 33 LLMMWLSMGISAFFFVPNLWVRIV 56 (71)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHH
Confidence 334455666676777776443333
No 155
>PRK09579 multidrug efflux protein; Reviewed
Probab=22.32 E-value=1.5e+02 Score=26.86 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHh
Q 034574 14 QYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFN 48 (90)
Q Consensus 14 eiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn 48 (90)
-.+-.+++.++++.+|+...++|+ +.++||+.=|
T Consensus 881 a~~G~~~~L~i~~~~l~~~s~~G~-i~L~GivVnn 914 (1017)
T PRK09579 881 SICGALIPLFLGVSSMNIYTQVGL-VTLIGLISKH 914 (1017)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHH-HHHHHHHHcC
Confidence 334456677889999999999995 4556665433
No 156
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=22.31 E-value=1.7e+02 Score=24.29 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=29.3
Q ss_pred HhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHhHH
Q 034574 10 RILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 10 GI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K~~ 53 (90)
.|+-|+..|++=.++|.+.+++..++.-+.++.-+...|+.+.+
T Consensus 156 AIvDDlgaIlVIA~FYt~~i~~~~L~~a~~~~~~l~~l~r~~v~ 199 (378)
T PF06965_consen 156 AIVDDLGAILVIALFYTDGISLLWLLLAAAALLLLFVLNRLGVR 199 (378)
T ss_dssp HHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHhhhhhHhheeeeeCCCCCHHHHHHHHHHHHHHHHHHHCCCc
Confidence 57788888888889999999998887777777777777776643
No 157
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=22.28 E-value=1.8e+02 Score=23.02 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=29.5
Q ss_pred hhHhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHH
Q 034574 8 SQRILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLF 47 (90)
Q Consensus 8 VaGI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvly 47 (90)
+..++=+++..+....+||-+++..-++|+.. ++|+.+-
T Consensus 156 l~al~~dv~~~l~~l~l~g~~l~~~~iaglLt-liG~svn 194 (297)
T PRK13021 156 LFALVHDVIFVLAFFALTQMEFNLTVLAAVLA-ILGYSLN 194 (297)
T ss_pred HHHHHHHHHHHHHHHHHHCCCccHHHHHHHHH-HHHHeee
Confidence 45667788888888999999999888888754 4555443
No 158
>PF10529 Hist_rich_Ca-bd: Histidine-rich Calcium-binding repeat region; InterPro: IPR019552 This entry represents a histidine-rich calcium-binding repeat which appears in proteins called histidine-rich-calcium binding proteins (HRC). HRC is a high capacity, low affinity Ca2+-binding protein, residing in the lumen of the sarcoplasmic reticulum. HRC binds directly to triadin. This binding interaction occurs between the histidine-rich region of HRC and multiple clusters of charged amino acids, named KEKE motifs, in the lumenal domain of triadin. This repeat is found in the acidic region of the protein, which can be long and variable. There is also a cysteine-rich region further towards the C terminus []. HRC may regulate sarcoplasmic reticular calcium transport, play a critical role in maintaining calcium homeostasis, and function in the heart. HRC is a candidate regulator of sarcoplasmic reticular calcium uptake.
Probab=21.74 E-value=42 Score=15.81 Aligned_cols=6 Identities=33% Similarity=0.518 Sum_probs=2.8
Q ss_pred cccccC
Q 034574 83 IDDLDE 88 (90)
Q Consensus 83 ~~d~~~ 88 (90)
+||+|+
T Consensus 9 eeDed~ 14 (15)
T PF10529_consen 9 EEDEDD 14 (15)
T ss_pred cccccc
Confidence 444444
No 159
>COG3374 Predicted membrane protein [Function unknown]
Probab=21.32 E-value=45 Score=25.52 Aligned_cols=26 Identities=27% Similarity=0.554 Sum_probs=17.4
Q ss_pred hcCccchhhhhHHHHHHhHHHHHhHHhHH
Q 034574 25 FHDEFTWLKGFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 25 Fge~lT~lni~Gl~iii~GVvlyn~~K~~ 53 (90)
|+|++- ++|+++...+|..|+-++.+
T Consensus 75 F~Dp~l---llGi~ll~~ais~~~g~dl~ 100 (197)
T COG3374 75 FYDPYL---LLGIVLLSVAISVYKGYDLQ 100 (197)
T ss_pred ecChHH---HHHHHHHHHHHHHHcCcchh
Confidence 444443 67888888888877666654
No 160
>PF06168 DUF981: Protein of unknown function (DUF981); InterPro: IPR009324 This is a family of uncharacterised proteins found in bacteria and archaea.
Probab=21.00 E-value=59 Score=24.46 Aligned_cols=12 Identities=42% Similarity=0.944 Sum_probs=4.8
Q ss_pred HHHHHHhHHHHH
Q 034574 36 GLFTILVGVSLF 47 (90)
Q Consensus 36 Gl~iii~GVvly 47 (90)
|+..+.-|+..+
T Consensus 108 Gl~~ivygv~i~ 119 (191)
T PF06168_consen 108 GLILIVYGVAIY 119 (191)
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 161
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=20.54 E-value=3.3e+02 Score=19.47 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=27.1
Q ss_pred HhHHHHHHHHHHHHHhcCccchh-hhhHHH--HHHhHHHHHhHHhHHHHHh
Q 034574 10 RILLQYVNVQVAVFYFHDEFTWL-KGFGLF--TILVGVSLFNWYKYQKLQA 57 (90)
Q Consensus 10 GI~KeiltI~iSv~iFge~lT~l-ni~Gl~--iii~GVvlyn~~K~~~~~~ 57 (90)
.++--+++++.++.++++++... .=+++. ++++=++...+.+|++.+.
T Consensus 23 i~~ll~~l~~~~~~Y~r~r~~tKyRDL~II~~L~ll~l~giq~~~y~~~~~ 73 (149)
T PF11694_consen 23 IIILLLVLIFFFIKYLRNRLDTKYRDLSIIALLLLLLLIGIQYSDYQQNQN 73 (149)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445677788888899987753 222332 2233333456666665543
No 162
>PRK09577 multidrug efflux protein; Reviewed
Probab=20.40 E-value=1.3e+02 Score=27.37 Aligned_cols=33 Identities=18% Similarity=0.100 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHh
Q 034574 15 YVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFN 48 (90)
Q Consensus 15 iltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn 48 (90)
.+-.+++.+++|-+|+...++|++ .++||+.=|
T Consensus 903 l~G~~~~l~l~g~~l~~~s~~G~i-~L~GivVnn 935 (1032)
T PRK09577 903 VIGAVLGVTLRGMPNDIYFKVGLI-ATIGLSAKN 935 (1032)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHH-HHHHHHHcC
Confidence 344577889999999999999998 677776533
No 163
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=20.38 E-value=1.3e+02 Score=22.86 Aligned_cols=20 Identities=10% Similarity=0.109 Sum_probs=15.4
Q ss_pred hhhhHHHHHHhHHHHHhHHh
Q 034574 32 LKGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 32 lni~Gl~iii~GVvlyn~~K 51 (90)
.|.+|+.+++.|++..-.-.
T Consensus 176 ~N~~gl~~~~fg~~V~~~~~ 195 (214)
T cd08764 176 GNFIGIVLVIFGGLVVYLVT 195 (214)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 58999999999987764433
No 164
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=20.19 E-value=33 Score=26.11 Aligned_cols=18 Identities=22% Similarity=0.565 Sum_probs=9.8
Q ss_pred HhHHHHHhHHhHHHHHhc
Q 034574 41 LVGVSLFNWYKYQKLQAG 58 (90)
Q Consensus 41 i~GVvlyn~~K~~~~~~~ 58 (90)
++|.-.|-|+|..+.+..
T Consensus 171 l~gGGa~yYfK~~K~K~~ 188 (218)
T PF14283_consen 171 LIGGGAYYYFKFYKPKQE 188 (218)
T ss_pred HhhcceEEEEEEeccccc
Confidence 344455567777654433
Done!