Query 034574
Match_columns 90
No_of_seqs 102 out of 261
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 06:31:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.1 2.3E-06 8E-11 59.2 3.8 41 11-51 65-105 (137)
2 3b5d_A Multidrug transporter E 98.0 5.6E-06 1.9E-10 54.6 3.9 40 12-51 66-105 (110)
3 4dx5_A Acriflavine resistance 24.7 1.2E+02 0.0042 25.7 5.5 30 13-42 907-936 (1057)
4 3ne5_A Cation efflux system pr 21.8 1.4E+02 0.0047 25.4 5.2 30 13-42 913-942 (1054)
5 2jo1_A Phospholemman; FXYD1, N 21.3 74 0.0025 19.9 2.7 15 38-52 26-40 (72)
6 3l1l_A Arginine/agmatine antip 19.9 85 0.0029 22.9 3.2 21 33-53 410-430 (445)
7 1afo_A Glycophorin A; integral 17.3 97 0.0033 17.3 2.3 13 8-20 20-32 (40)
8 2zxe_G FXYD10, phospholemman-l 17.2 78 0.0027 19.9 2.1 12 38-49 29-40 (74)
9 3aqp_A Probable secdf protein- 16.0 3.7E+02 0.013 22.2 6.5 35 9-44 599-633 (741)
10 4h33_A LMO2059 protein; bilaye 15.6 87 0.003 20.3 2.2 30 20-49 55-87 (137)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.09 E-value=2.3e-06 Score=59.19 Aligned_cols=41 Identities=15% Similarity=0.130 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHh
Q 034574 11 ILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 11 I~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K 51 (90)
-+.-++++++|+++|||++|+.+++|++++++||++.+..+
T Consensus 65 ~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 65 GVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 35678899999999999999999999999999999997543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.98 E-value=5.6e-06 Score=54.59 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhHHh
Q 034574 12 LLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 12 ~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~~K 51 (90)
+.-++++++|+++|||++|+.+++|++++++||++.+..+
T Consensus 66 ~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 66 VGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4678899999999999999999999999999999997643
No 3
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=24.74 E-value=1.2e+02 Score=25.72 Aligned_cols=30 Identities=17% Similarity=0.074 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhcCccchhhhhHHHHHHh
Q 034574 13 LQYVNVQVAVFYFHDEFTWLKGFGLFTILV 42 (90)
Q Consensus 13 KeiltI~iSv~iFge~lT~lni~Gl~iii~ 42 (90)
=.++..+++..+||-+++...++|+++++.
T Consensus 907 ~~~~~~~~~l~~~g~~l~~~~~~g~i~l~G 936 (1057)
T 4dx5_A 907 LGVIGALLAATFRGLTNDVYFQVGLLTTIG 936 (1057)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCccHHHHHHHHHHHH
Confidence 344455666778999999999999876644
No 4
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=21.78 E-value=1.4e+02 Score=25.45 Aligned_cols=30 Identities=10% Similarity=0.167 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhcCccchhhhhHHHHHHh
Q 034574 13 LQYVNVQVAVFYFHDEFTWLKGFGLFTILV 42 (90)
Q Consensus 13 KeiltI~iSv~iFge~lT~lni~Gl~iii~ 42 (90)
=.++..+++.++||-+++...++|+++++.
T Consensus 913 ~~~~g~~~~l~l~g~~l~~~~~~g~i~l~G 942 (1054)
T 3ne5_A 913 FALVGGIWLLWWMGFHLSVATGTGFIALAG 942 (1054)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCccHHHHHHHHHHHH
Confidence 344555667788999999999999876544
No 5
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=21.35 E-value=74 Score=19.86 Aligned_cols=15 Identities=7% Similarity=0.222 Sum_probs=7.5
Q ss_pred HHHHhHHHHHhHHhH
Q 034574 38 FTILVGVSLFNWYKY 52 (90)
Q Consensus 38 ~iii~GVvlyn~~K~ 52 (90)
+++++||++.-..|.
T Consensus 26 vLfi~GI~iilS~Kc 40 (72)
T 2jo1_A 26 ILFILGILIVLSRRC 40 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc
Confidence 444555555544443
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=19.88 E-value=85 Score=22.87 Aligned_cols=21 Identities=10% Similarity=0.200 Sum_probs=16.2
Q ss_pred hhhHHHHHHhHHHHHhHHhHH
Q 034574 33 KGFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 33 ni~Gl~iii~GVvlyn~~K~~ 53 (90)
-+.|+++++.|+.+|-+.+.+
T Consensus 410 ~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 410 VMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 355888899999999777653
No 7
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=17.29 E-value=97 Score=17.31 Aligned_cols=13 Identities=0% Similarity=-0.018 Sum_probs=6.4
Q ss_pred hhHhHHHHHHHHH
Q 034574 8 SQRILLQYVNVQV 20 (90)
Q Consensus 8 VaGI~KeiltI~i 20 (90)
.|||++.++.|..
T Consensus 20 maGiIG~IllI~y 32 (40)
T 1afo_A 20 MAGVIGTILLISY 32 (40)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555554443
No 8
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=17.17 E-value=78 Score=19.86 Aligned_cols=12 Identities=8% Similarity=0.243 Sum_probs=5.2
Q ss_pred HHHHhHHHHHhH
Q 034574 38 FTILVGVSLFNW 49 (90)
Q Consensus 38 ~iii~GVvlyn~ 49 (90)
+++++||++.-.
T Consensus 29 vLfi~GI~iilS 40 (74)
T 2zxe_G 29 VLCVIGIIILLA 40 (74)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc
Confidence 334444444433
No 9
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=15.98 E-value=3.7e+02 Score=22.25 Aligned_cols=35 Identities=23% Similarity=0.097 Sum_probs=24.5
Q ss_pred hHhHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHH
Q 034574 9 QRILLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGV 44 (90)
Q Consensus 9 aGI~KeiltI~iSv~iFge~lT~lni~Gl~iii~GV 44 (90)
..++=.++..+....+||-+++...++|+.++ +|+
T Consensus 599 ~~l~~~~~~~~g~l~l~g~~l~~~~i~~~l~l-iGi 633 (741)
T 3aqp_A 599 LAVAHDVAIVAGMYSLLGLEFSIPTIAALLTI-VGY 633 (741)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHH-HHH
Confidence 34445556666667789999999888887654 554
No 10
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=15.59 E-value=87 Score=20.32 Aligned_cols=30 Identities=13% Similarity=0.267 Sum_probs=18.7
Q ss_pred HHHHHhcC--ccchh-hhhHHHHHHhHHHHHhH
Q 034574 20 VAVFYFHD--EFTWL-KGFGLFTILVGVSLFNW 49 (90)
Q Consensus 20 iSv~iFge--~lT~l-ni~Gl~iii~GVvlyn~ 49 (90)
++.+=||| |.|+. +++..+.+++|+.++.+
T Consensus 55 ~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~ 87 (137)
T 4h33_A 55 ATTVGYGDIVPVTPIGRILASIMMLFGIAFIGM 87 (137)
T ss_dssp HTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHH
Confidence 33444666 45543 66777778888777655
Done!