Query 034574
Match_columns 90
No_of_seqs 102 out of 261
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 06:31:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034574.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034574hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kqfb2 f.23.22.1 (B:246-290) 36.1 14 0.001 19.8 2.6 28 20-47 3-30 (45)
2 d1iwga8 f.35.1.1 (A:513-566,A: 27.5 74 0.0054 20.5 7.4 36 14-49 94-129 (222)
3 d1cola_ f.1.1.1 (A:) Colicin A 27.1 27 0.002 23.8 3.5 21 26-47 162-182 (197)
4 d1fftb2 f.17.2.1 (B:27-117) Cy 22.5 30 0.0022 20.0 2.6 22 34-55 25-46 (91)
5 d1n1ea1 a.100.1.6 (A:198-357) 20.7 30 0.0022 21.7 2.5 17 7-23 7-23 (160)
6 d1txga1 a.100.1.6 (A:181-335) 17.5 66 0.0048 19.9 3.7 29 7-35 6-37 (155)
7 d1iwga7 f.35.1.1 (A:7-37,A:331 16.2 1.3E+02 0.0092 18.9 6.5 37 12-48 74-110 (199)
8 d1v54m_ f.23.7.1 (M:) Mitochon 14.0 65 0.0048 16.9 2.4 20 27-46 8-28 (43)
9 d2axti1 f.23.37.1 (I:1-35) Pho 12.4 57 0.0041 16.4 1.8 13 14-26 10-22 (35)
10 d3dtub2 f.17.2.1 (B:30-129) Ba 11.7 66 0.0048 18.5 2.2 22 34-55 36-57 (100)
No 1
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=36.07 E-value=14 Score=19.81 Aligned_cols=28 Identities=14% Similarity=0.300 Sum_probs=24.0
Q ss_pred HHHHHhcCccchhhhhHHHHHHhHHHHH
Q 034574 20 VAVFYFHDEFTWLKGFGLFTILVGVSLF 47 (90)
Q Consensus 20 iSv~iFge~lT~lni~Gl~iii~GVvly 47 (90)
.++.+|++.+-|+..+|++.++++.+++
T Consensus 3 ~~V~lWKgv~Kpl~~~~~~~~~~~~~fH 30 (45)
T d1kqfb2 3 TSVSLWKGALKPLAAAGFIATFAGLIFH 30 (45)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 4677889999999999999999888876
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=27.48 E-value=74 Score=20.50 Aligned_cols=36 Identities=11% Similarity=-0.081 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHhH
Q 034574 14 QYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFNW 49 (90)
Q Consensus 14 eiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn~ 49 (90)
.++..+++..+++-+++....+|+++++...+-+..
T Consensus 94 ~~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v~~~i 129 (222)
T d1iwga8 94 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAI 129 (222)
T ss_dssp HHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchhhhhcccccchhhhhhhHHH
Confidence 344556677788999999998888886655544443
No 3
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=27.15 E-value=27 Score=23.80 Aligned_cols=21 Identities=10% Similarity=-0.097 Sum_probs=14.2
Q ss_pred cCccchhhhhHHHHHHhHHHHH
Q 034574 26 HDEFTWLKGFGLFTILVGVSLF 47 (90)
Q Consensus 26 ge~lT~lni~Gl~iii~GVvly 47 (90)
+-|.|++-++|+ +++..|..|
T Consensus 162 g~~~~~iGI~g~-li~~~v~al 182 (197)
T d1cola_ 162 GVPAIAVGIAGI-LLAAVVGAL 182 (197)
T ss_dssp CSCHHHHHHHHH-HHHHHHHHH
T ss_pred cccccHHHHHHH-HHHHHHHHH
Confidence 677788888888 555555433
No 4
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=22.47 E-value=30 Score=19.96 Aligned_cols=22 Identities=9% Similarity=-0.044 Sum_probs=16.7
Q ss_pred hhHHHHHHhHHHHHhHHhHHHH
Q 034574 34 GFGLFTILVGVSLFNWYKYQKL 55 (90)
Q Consensus 34 i~Gl~iii~GVvlyn~~K~~~~ 55 (90)
.+.+++.+.|..+|-..||++.
T Consensus 25 ~~iv~v~V~~~~~~~~~ryR~~ 46 (91)
T d1fftb2 25 MLIVVIPAILMAVGFAWKYRAS 46 (91)
T ss_dssp TTTTTTHHHHHHHTTTTTTTTS
T ss_pred HHHHHHHHHHHHHhhheeeecc
Confidence 4556778888889999999643
No 5
>d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Probab=20.68 E-value=30 Score=21.68 Aligned_cols=17 Identities=6% Similarity=0.081 Sum_probs=14.3
Q ss_pred hhhHhHHHHHHHHHHHH
Q 034574 7 DSQRILLQYVNVQVAVF 23 (90)
Q Consensus 7 ~VaGI~KeiltI~iSv~ 23 (90)
-++|.+|.++.|..|+.
T Consensus 7 E~~galKNi~Aia~Gi~ 23 (160)
T d1n1ea1 7 EVASAVKNVLAIGSGVA 23 (160)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 37899999999988876
No 6
>d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=17.46 E-value=66 Score=19.92 Aligned_cols=29 Identities=7% Similarity=0.006 Sum_probs=19.9
Q ss_pred hhhHhHHHHHHHHHHHHH---hcCccchhhhh
Q 034574 7 DSQRILLQYVNVQVAVFY---FHDEFTWLKGF 35 (90)
Q Consensus 7 ~VaGI~KeiltI~iSv~i---Fge~lT~lni~ 35 (90)
.++|.+|.++.|..|+.- +++.....|.-
T Consensus 6 Ei~galKNi~Aia~Gi~~gl~~g~~~~~~N~~ 37 (155)
T d1txga1 6 EITSALKNVYSIAIAWIRGYESRKNVEMSNAK 37 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccchHHHH
Confidence 478999999999999863 44443334443
No 7
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=16.18 E-value=1.3e+02 Score=18.90 Aligned_cols=37 Identities=11% Similarity=-0.029 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHh
Q 034574 12 LLQYVNVQVAVFYFHDEFTWLKGFGLFTILVGVSLFN 48 (90)
Q Consensus 12 ~KeiltI~iSv~iFge~lT~lni~Gl~iii~GVvlyn 48 (90)
.--++..+....+|+-+++.....+..+++...+-++
T Consensus 74 ~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~~ 110 (199)
T d1iwga7 74 PVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDA 110 (199)
T ss_dssp HHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhcccH
Confidence 3344555566778888999988888887777666553
No 8
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.96 E-value=65 Score=16.85 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=11.7
Q ss_pred Cccchh-hhhHHHHHHhHHHH
Q 034574 27 DEFTWL-KGFGLFTILVGVSL 46 (90)
Q Consensus 27 e~lT~l-ni~Gl~iii~GVvl 46 (90)
++++.. +.+|+.++++++++
T Consensus 8 ~~ls~~E~aigLt~~f~~~L~ 28 (43)
T d1v54m_ 8 TPTSPKEQAIGLSVTFLSFLL 28 (43)
T ss_dssp SCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHc
Confidence 345543 66777777665543
No 9
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.37 E-value=57 Score=16.42 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhc
Q 034574 14 QYVNVQVAVFYFH 26 (90)
Q Consensus 14 eiltI~iSv~iFg 26 (90)
.+++.++|.++||
T Consensus 10 ~vV~fFv~lFiFG 22 (35)
T d2axti1 10 IVVTFFVLLFVFG 22 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh
Confidence 3445555656554
No 10
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=11.74 E-value=66 Score=18.45 Aligned_cols=22 Identities=5% Similarity=0.161 Sum_probs=16.4
Q ss_pred hhHHHHHHhHHHHHhHHhHHHH
Q 034574 34 GFGLFTILVGVSLFNWYKYQKL 55 (90)
Q Consensus 34 i~Gl~iii~GVvlyn~~K~~~~ 55 (90)
.+++.+.+.|+..|...||++.
T Consensus 36 ~~~I~~~V~~~l~~~~~~~r~~ 57 (100)
T d3dtub2 36 IAAITIFVTLLILYAVWRFHEK 57 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHHHHHhhhhhcc
Confidence 4566777888888888888643
Done!