BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034575
(90 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|308569654|gb|ADO34793.1| high mobility group box 2 protein [Gossypium hirsutum]
Length = 146
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/84 (88%), Positives = 80/84 (95%), Gaps = 1/84 (1%)
Query: 1 MKGGKSKSDTRNAKLSVNKK-PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKD 59
MKGGKSKSD ++AKLSVNKK KAG+KSGKAAKDPNKPKRPASAFFVFMEEFREQYKK+
Sbjct: 1 MKGGKSKSDAKSAKLSVNKKSTTKAGKKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKE 60
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEA 83
HPKNKSVAAVGKAGG+KWKS+SEA
Sbjct: 61 HPKNKSVAAVGKAGGDKWKSLSEA 84
>gi|224083306|ref|XP_002306980.1| high mobility group family [Populus trichocarpa]
gi|222856429|gb|EEE93976.1| high mobility group family [Populus trichocarpa]
Length = 160
Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/89 (82%), Positives = 80/89 (89%), Gaps = 6/89 (6%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAG------RKSGKAAKDPNKPKRPASAFFVFMEEFRE 54
MKGG+SKSDT++AKLSV KKP K G RKSGKAAKDPNKPKRPASAFFVFMEEFRE
Sbjct: 1 MKGGRSKSDTKSAKLSVTKKPTKGGGGGAAARKSGKAAKDPNKPKRPASAFFVFMEEFRE 60
Query: 55 QYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
QYK++HPKNKSVAAVGKAGG+KWKS+SEA
Sbjct: 61 QYKREHPKNKSVAAVGKAGGDKWKSLSEA 89
>gi|297845042|ref|XP_002890402.1| hypothetical protein ARALYDRAFT_472304 [Arabidopsis lyrata subsp.
lyrata]
gi|297336244|gb|EFH66661.1| hypothetical protein ARALYDRAFT_472304 [Arabidopsis lyrata subsp.
lyrata]
Length = 141
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/83 (80%), Positives = 76/83 (91%), Gaps = 3/83 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK++TRNAKLSV KKPAK G+ AAKDPNKPKRP+SAFFVFME+FRE YKK+H
Sbjct: 3 MKGGKSKTETRNAKLSVTKKPAKGGKG---AAKDPNKPKRPSSAFFVFMEDFRETYKKEH 59
Query: 61 PKNKSVAAVGKAGGEKWKSMSEA 83
PKNKSVAAVGKAGGEKWKS+S++
Sbjct: 60 PKNKSVAAVGKAGGEKWKSLSDS 82
>gi|312282031|dbj|BAJ33881.1| unnamed protein product [Thellungiella halophila]
Length = 141
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/83 (78%), Positives = 75/83 (90%), Gaps = 3/83 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK++TR++KLSVNKKP K G+ AAKDPNKPKRPASAFFVFMEEFRE YKK+H
Sbjct: 1 MKGGKSKTETRSSKLSVNKKPTKGGKG---AAKDPNKPKRPASAFFVFMEEFRETYKKEH 57
Query: 61 PKNKSVAAVGKAGGEKWKSMSEA 83
P NKSVAAVGKAGG+KWKS+S++
Sbjct: 58 PNNKSVAAVGKAGGQKWKSLSDS 80
>gi|312281681|dbj|BAJ33706.1| unnamed protein product [Thellungiella halophila]
Length = 144
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/83 (77%), Positives = 75/83 (90%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK++TR++KLSV KKPAK +S AAKDPNKPKRPASAFFVFME+FRE +KK+H
Sbjct: 1 MKGGKSKTETRSSKLSVTKKPAKGAGRSKAAAKDPNKPKRPASAFFVFMEDFRETFKKEH 60
Query: 61 PKNKSVAAVGKAGGEKWKSMSEA 83
PKNKSVAAVGKA G+KWKS+S+A
Sbjct: 61 PKNKSVAAVGKAAGDKWKSLSDA 83
>gi|255539248|ref|XP_002510689.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223551390|gb|EEF52876.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 145
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/83 (85%), Positives = 80/83 (96%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK+D +N+KLSVNKKP KA +K+GKAAKDPNKPKRPASAFFVFMEEFREQYKK+H
Sbjct: 1 MKGGKSKADAKNSKLSVNKKPVKATKKAGKAAKDPNKPKRPASAFFVFMEEFREQYKKEH 60
Query: 61 PKNKSVAAVGKAGGEKWKSMSEA 83
PKNKSVAAVGKAGG++WKSMSE+
Sbjct: 61 PKNKSVAAVGKAGGDRWKSMSES 83
>gi|304651500|gb|ADM47612.1| high mobility group protein [Hevea brasiliensis]
Length = 146
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/84 (89%), Positives = 81/84 (96%), Gaps = 1/84 (1%)
Query: 1 MKGGKSKSDTRNA-KLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKD 59
MKGGKSKSDT+ A +LSVNKKPAKA +KSGKAAKDPNKPKRPASAFFVFMEEFREQYKK+
Sbjct: 1 MKGGKSKSDTKAANRLSVNKKPAKASKKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKE 60
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEA 83
HPKNKSVAAVGKAGG+KWKS+SEA
Sbjct: 61 HPKNKSVAAVGKAGGDKWKSLSEA 84
>gi|118488125|gb|ABK95882.1| unknown [Populus trichocarpa]
Length = 151
Score = 124 bits (310), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 66/88 (75%), Positives = 73/88 (82%), Gaps = 5/88 (5%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAK-----DPNKPKRPASAFFVFMEEFREQ 55
MKGG+SKSDT++AKLSVNKKP K G + DPNKPKRPASAFFVFMEEFREQ
Sbjct: 1 MKGGRSKSDTKSAKLSVNKKPTKGGAAAAAKKSGKAAKDPNKPKRPASAFFVFMEEFREQ 60
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
YKK+HPKNKSVAAVGKAGG+KWKS+S A
Sbjct: 61 YKKEHPKNKSVAAVGKAGGDKWKSLSAA 88
>gi|357640485|gb|AET87126.1| high mobility group B2 protein [Brassica napus]
Length = 145
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 75/83 (90%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK++TR++KLSV KKPAKA S AAKDPNKPKRPASAFFVFME+FR+ YKKDH
Sbjct: 1 MKGGKSKTETRSSKLSVAKKPAKAAGGSKAAAKDPNKPKRPASAFFVFMEDFRQTYKKDH 60
Query: 61 PKNKSVAAVGKAGGEKWKSMSEA 83
P NKSVAAVGKAGGEKWKS+S++
Sbjct: 61 PNNKSVAAVGKAGGEKWKSLSDS 83
>gi|308569660|gb|ADO34795.1| high mobility group box 1 protein [Gossypium hirsutum]
Length = 142
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/83 (87%), Positives = 79/83 (95%), Gaps = 3/83 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSKSDT++AKLSV +KAG+KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH
Sbjct: 1 MKGGKSKSDTKSAKLSVK---SKAGKKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 57
Query: 61 PKNKSVAAVGKAGGEKWKSMSEA 83
PKNKSVAAVGKAGG+KWKS+SEA
Sbjct: 58 PKNKSVAAVGKAGGDKWKSLSEA 80
>gi|79318295|ref|NP_001031075.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|332191889|gb|AEE30010.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 147
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/83 (73%), Positives = 72/83 (86%), Gaps = 3/83 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR+ KLSV KKPAK + AAKDPNKPKRP+SAFFVFME+FR YK++H
Sbjct: 1 MKGAKSKAETRSTKLSVTKKPAKGAKG---AAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 57
Query: 61 PKNKSVAAVGKAGGEKWKSMSEA 83
PKNKSVAAVGKAGGEKWKS+S++
Sbjct: 58 PKNKSVAAVGKAGGEKWKSLSDS 80
>gi|8886929|gb|AAF80615.1|AC069251_8 F2D10.18 [Arabidopsis thaliana]
Length = 662
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/83 (73%), Positives = 72/83 (86%), Gaps = 3/83 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR+ KLSV KKPAK + AAKDPNKPKRP+SAFFVFME+FR YK++H
Sbjct: 522 MKGAKSKAETRSTKLSVTKKPAKGAKG---AAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 578
Query: 61 PKNKSVAAVGKAGGEKWKSMSEA 83
PKNKSVAAVGKAGGEKWKS+S++
Sbjct: 579 PKNKSVAAVGKAGGEKWKSLSDS 601
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/83 (71%), Positives = 72/83 (86%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR++KLSV KKPAK + AAKDPNKPKRPASAFFVFME+FRE +KK++
Sbjct: 378 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 437
Query: 61 PKNKSVAAVGKAGGEKWKSMSEA 83
PKNKSVA VGKA G+KWKS+S++
Sbjct: 438 PKNKSVATVGKAAGDKWKSLSDS 460
>gi|224081483|ref|XP_002306429.1| high mobility group family [Populus trichocarpa]
gi|222855878|gb|EEE93425.1| high mobility group family [Populus trichocarpa]
Length = 144
Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 63/84 (75%), Positives = 72/84 (85%), Gaps = 1/84 (1%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRK-SGKAAKDPNKPKRPASAFFVFMEEFREQYKKD 59
MKGG+SKSD+RN + +K A AG K S KAAKDPNKPKRPASAFFVFME+FR+QYK+
Sbjct: 1 MKGGRSKSDSRNNDAKLKRKGAGAGTKASKKAAKDPNKPKRPASAFFVFMEDFRKQYKES 60
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEA 83
HP NKSVAAVGKAGG+KWKS+SEA
Sbjct: 61 HPNNKSVAAVGKAGGDKWKSLSEA 84
>gi|145323962|ref|NP_001077570.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|332191890|gb|AEE30011.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 140
Score = 120 bits (301), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/83 (73%), Positives = 72/83 (86%), Gaps = 3/83 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR+ KLSV KKPAK + AAKDPNKPKRP+SAFFVFME+FR YK++H
Sbjct: 1 MKGAKSKAETRSTKLSVTKKPAKGAKG---AAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 57
Query: 61 PKNKSVAAVGKAGGEKWKSMSEA 83
PKNKSVAAVGKAGGEKWKS+S++
Sbjct: 58 PKNKSVAAVGKAGGEKWKSLSDS 80
>gi|118484838|gb|ABK94286.1| unknown [Populus trichocarpa]
Length = 144
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/84 (75%), Positives = 72/84 (85%), Gaps = 1/84 (1%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRK-SGKAAKDPNKPKRPASAFFVFMEEFREQYKKD 59
MKGG+SKSD+RN + +K A AG K S KAAKDPNKPKRPASAFFVFME+FR+QYK+
Sbjct: 1 MKGGRSKSDSRNNDAKLKRKGAGAGTKASKKAAKDPNKPKRPASAFFVFMEDFRKQYKES 60
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEA 83
HP NKSVAAVGKAGG+KWKS+SEA
Sbjct: 61 HPNNKSVAAVGKAGGDKWKSLSEA 84
>gi|18394900|ref|NP_564124.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|75220405|sp|P93047.1|HMGB3_ARATH RecName: Full=High mobility group B protein 3; AltName: Full=High
mobility group protein B 2; Short=AtHMGbeta2; Short=HMG
beta 2; AltName: Full=Nucleosome/chromatin assembly
factor group D 03; Short=Nucleosome/chromatin assembly
factor group D 3
gi|15724174|gb|AAL06479.1|AF411789_1 At1g20690/F2D10_15 [Arabidopsis thaliana]
gi|1694976|emb|CAA70691.1| HMG1 [Arabidopsis thaliana]
gi|2832361|emb|CAA74402.1| HMG protein [Arabidopsis thaliana]
gi|20453325|gb|AAM19901.1| At1g20690/F2D10_15 [Arabidopsis thaliana]
gi|21537072|gb|AAM61413.1| unknown [Arabidopsis thaliana]
gi|22530942|gb|AAM96975.1| expressed protein [Arabidopsis thaliana]
gi|23198424|gb|AAN15739.1| expressed protein [Arabidopsis thaliana]
gi|332191888|gb|AEE30009.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 141
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/83 (73%), Positives = 72/83 (86%), Gaps = 3/83 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR+ KLSV KKPAK + AAKDPNKPKRP+SAFFVFME+FR YK++H
Sbjct: 1 MKGAKSKAETRSTKLSVTKKPAKGAKG---AAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 57
Query: 61 PKNKSVAAVGKAGGEKWKSMSEA 83
PKNKSVAAVGKAGGEKWKS+S++
Sbjct: 58 PKNKSVAAVGKAGGEKWKSLSDS 80
>gi|79318286|ref|NP_001031074.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|297845040|ref|XP_002890401.1| hypothetical protein ARALYDRAFT_472301 [Arabidopsis lyrata subsp.
lyrata]
gi|297336243|gb|EFH66660.1| hypothetical protein ARALYDRAFT_472301 [Arabidopsis lyrata subsp.
lyrata]
gi|332191886|gb|AEE30007.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 142
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/83 (71%), Positives = 72/83 (86%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR++KLSV KKPAK + AAKDPNKPKRPASAFFVFME+FRE +KK++
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 61 PKNKSVAAVGKAGGEKWKSMSEA 83
PKNKSVA VGKA G+KWKS+S++
Sbjct: 61 PKNKSVATVGKAAGDKWKSLSDS 83
>gi|18394898|ref|NP_564123.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|75219648|sp|O49596.1|HMGB2_ARATH RecName: Full=High mobility group B protein 2; AltName: Full=High
mobility group protein B 1; Short=AtHMGbeta1; Short=HMG
beta 1; AltName: Full=Nucleosome/chromatin assembly
factor group D 02; Short=Nucleosome/chromatin assembly
factor group D 2
gi|13877971|gb|AAK44063.1|AF370248_1 unknown protein [Arabidopsis thaliana]
gi|2832359|emb|CAA74401.1| HMG protein [Arabidopsis thaliana]
gi|17104699|gb|AAL34238.1| unknown protein [Arabidopsis thaliana]
gi|21536964|gb|AAM61305.1| unknown [Arabidopsis thaliana]
gi|26452113|dbj|BAC43146.1| unknown protein [Arabidopsis thaliana]
gi|225897948|dbj|BAH30306.1| hypothetical protein [Arabidopsis thaliana]
gi|332191885|gb|AEE30006.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 144
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/83 (71%), Positives = 72/83 (86%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR++KLSV KKPAK + AAKDPNKPKRPASAFFVFME+FRE +KK++
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 61 PKNKSVAAVGKAGGEKWKSMSEA 83
PKNKSVA VGKA G+KWKS+S++
Sbjct: 61 PKNKSVATVGKAAGDKWKSLSDS 83
>gi|145323960|ref|NP_001077569.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|332191887|gb|AEE30008.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 143
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/83 (71%), Positives = 72/83 (86%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR++KLSV KKPAK + AAKDPNKPKRPASAFFVFME+FRE +KK++
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 61 PKNKSVAAVGKAGGEKWKSMSEA 83
PKNKSVA VGKA G+KWKS+S++
Sbjct: 61 PKNKSVATVGKAAGDKWKSLSDS 83
>gi|308569658|gb|ADO34794.1| high mobility group box 4 protein [Gossypium hirsutum]
Length = 148
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/84 (76%), Positives = 73/84 (86%), Gaps = 1/84 (1%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKD 59
MKGGKSKSDT++++L+VNKK + K A DPNKPKRPASAFFVFMEEFREQYKK+
Sbjct: 1 MKGGKSKSDTKSSRLAVNKKSSAKAGKKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKE 60
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEA 83
HPKNKSVAAVGKAGGEKWKS+S+A
Sbjct: 61 HPKNKSVAAVGKAGGEKWKSLSDA 84
>gi|224065681|ref|XP_002301918.1| high mobility group family [Populus trichocarpa]
gi|222843644|gb|EEE81191.1| high mobility group family [Populus trichocarpa]
Length = 152
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 65/88 (73%), Positives = 72/88 (81%), Gaps = 5/88 (5%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAK-----DPNKPKRPASAFFVFMEEFREQ 55
MKGG+SKSDT++AKLSVNKKP K + DPNKPKRPASAFFVFMEEFREQ
Sbjct: 1 MKGGRSKSDTKSAKLSVNKKPTKGAAAAAAKKSGKAAKDPNKPKRPASAFFVFMEEFREQ 60
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
YKK+HPKNKSVAAVGKAGG+KWKS+S A
Sbjct: 61 YKKEHPKNKSVAAVGKAGGDKWKSLSAA 88
>gi|359476973|ref|XP_002280084.2| PREDICTED: high mobility group B2 protein-like isoform 1 [Vitis
vinifera]
Length = 156
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/92 (68%), Positives = 72/92 (78%), Gaps = 9/92 (9%)
Query: 1 MKGGKSKSDT-----RNAKLSVNKKPAKA-GRKSGK---AAKDPNKPKRPASAFFVFMEE 51
MKGGKSK+ NA+LSV KK A A G+K+ K A KDPNKPKRPASAFFVFMEE
Sbjct: 1 MKGGKSKAAEVKRADSNARLSVKKKGAAAVGKKTAKKEKAVKDPNKPKRPASAFFVFMEE 60
Query: 52 FREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
FR+QYK+ HP NKSV+ VGKAGG+KWKS+SEA
Sbjct: 61 FRKQYKEKHPANKSVSVVGKAGGDKWKSLSEA 92
>gi|359476975|ref|XP_003631923.1| PREDICTED: high mobility group B2 protein-like isoform 2 [Vitis
vinifera]
Length = 125
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/92 (68%), Positives = 72/92 (78%), Gaps = 9/92 (9%)
Query: 1 MKGGKSKSDT-----RNAKLSVNKKPAKA-GRKSGK---AAKDPNKPKRPASAFFVFMEE 51
MKGGKSK+ NA+LSV KK A A G+K+ K A KDPNKPKRPASAFFVFMEE
Sbjct: 1 MKGGKSKAAEVKRADSNARLSVKKKGAAAVGKKTAKKEKAVKDPNKPKRPASAFFVFMEE 60
Query: 52 FREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
FR+QYK+ HP NKSV+ VGKAGG+KWKS+SEA
Sbjct: 61 FRKQYKEKHPANKSVSVVGKAGGDKWKSLSEA 92
>gi|351725757|ref|NP_001235312.1| uncharacterized protein LOC100499992 [Glycine max]
gi|255628371|gb|ACU14530.1| unknown [Glycine max]
Length = 139
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/80 (72%), Positives = 66/80 (82%), Gaps = 1/80 (1%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRK-SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN 63
K+KSD + A + +K A AGRK S KAAKDPNKPKRP SAFFVFM EFREQ+KK+HP N
Sbjct: 3 KAKSDAKAADSRLKRKGAGAGRKQSRKAAKDPNKPKRPPSAFFVFMSEFREQFKKEHPNN 62
Query: 64 KSVAAVGKAGGEKWKSMSEA 83
KSVA VGKAGGEKWKS+S+A
Sbjct: 63 KSVAVVGKAGGEKWKSLSDA 82
>gi|296088654|emb|CBI37645.3| unnamed protein product [Vitis vinifera]
Length = 154
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/90 (68%), Positives = 72/90 (80%), Gaps = 7/90 (7%)
Query: 1 MKGGKSKS---DTRNAKLSVNKKPAKA-GRKSGK---AAKDPNKPKRPASAFFVFMEEFR 53
MKGGKSK+ ++KLSV KK A A G+K+ K A KDPNKPKRPASAFFVFMEEFR
Sbjct: 1 MKGGKSKAAEVKRADSKLSVKKKGAAAVGKKTAKKEKAVKDPNKPKRPASAFFVFMEEFR 60
Query: 54 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+QYK+ HP NKSV+ VGKAGG+KWKS+SEA
Sbjct: 61 KQYKEKHPANKSVSVVGKAGGDKWKSLSEA 90
>gi|194466163|gb|ACF74312.1| high mobility group protein 1 [Arachis hypogaea]
Length = 139
Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/79 (68%), Positives = 62/79 (78%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
K K+D + A + +K A GRK K AKDPNKPKRP SAFFVFM EFREQYKK+HP NK
Sbjct: 3 KVKADAKAADNRLKRKGAGTGRKQAKKAKDPNKPKRPPSAFFVFMSEFREQYKKEHPNNK 62
Query: 65 SVAAVGKAGGEKWKSMSEA 83
SVA VGKAGG++WKSMS+A
Sbjct: 63 SVAVVGKAGGDRWKSMSDA 81
>gi|225457566|ref|XP_002272299.1| PREDICTED: high mobility group-like isoform 1 [Vitis vinifera]
gi|359491843|ref|XP_003634333.1| PREDICTED: high mobility group-like isoform 2 [Vitis vinifera]
gi|297745562|emb|CBI40727.3| unnamed protein product [Vitis vinifera]
Length = 153
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/89 (66%), Positives = 67/89 (75%), Gaps = 6/89 (6%)
Query: 1 MKGGKSKSDTR--NAKLSVNKKPAKAGRKSGKAAK----DPNKPKRPASAFFVFMEEFRE 54
MKGG+SKSDT+ +AKLSV K A + DPNKPKRPASAFFVFMEEFR+
Sbjct: 1 MKGGRSKSDTKKADAKLSVKKGAAATKAGKKTKKEKPVKDPNKPKRPASAFFVFMEEFRK 60
Query: 55 QYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
QYK+ HP NKSV+ VGKAGG+KWKSMSEA
Sbjct: 61 QYKEKHPSNKSVSVVGKAGGDKWKSMSEA 89
>gi|1813329|dbj|BAA19156.1| HMG-1 [Canavalia gladiata]
Length = 141
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/80 (71%), Positives = 65/80 (81%), Gaps = 1/80 (1%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRK-SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN 63
K K+D + A + +K A AGRK S KAAKDPNKPKRP SAFFVFM EFREQYKK+HP N
Sbjct: 3 KVKADAKAADNRLKRKGAGAGRKQSKKAAKDPNKPKRPPSAFFVFMSEFREQYKKEHPTN 62
Query: 64 KSVAAVGKAGGEKWKSMSEA 83
KSVA VGKAGG+KWKS+S+A
Sbjct: 63 KSVAVVGKAGGDKWKSLSDA 82
>gi|729737|sp|P40620.1|HMGL_VICFA RecName: Full=HMG1/2-like protein
Length = 149
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 69/89 (77%), Gaps = 7/89 (7%)
Query: 1 MKGGKSKSDTRNA--KLSVNKKPAKAGRKSGKAA-----KDPNKPKRPASAFFVFMEEFR 53
MKGGKSK +++ A KL+VNKK A A + K A KDPNKPKRP SAFFVFM +FR
Sbjct: 1 MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFR 60
Query: 54 EQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
EQYKKDHP NKSVAAVGKA GE+WKS+SE
Sbjct: 61 EQYKKDHPNNKSVAAVGKACGEEWKSLSE 89
>gi|217075707|gb|ACJ86213.1| unknown [Medicago truncatula]
gi|388513073|gb|AFK44598.1| unknown [Medicago truncatula]
Length = 142
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/79 (72%), Positives = 64/79 (81%), Gaps = 1/79 (1%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRK-SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN 63
K K+D++ A + +K A AGRK + KAAKDPNKPKRP SAFFVFM +FREQYKKDHP N
Sbjct: 3 KVKADSKPADNRLKRKGAGAGRKQTKKAAKDPNKPKRPPSAFFVFMSDFREQYKKDHPNN 62
Query: 64 KSVAAVGKAGGEKWKSMSE 82
KSVAAVGKA GE WKSMSE
Sbjct: 63 KSVAAVGKACGEAWKSMSE 81
>gi|388497528|gb|AFK36830.1| unknown [Medicago truncatula]
Length = 155
Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/90 (66%), Positives = 72/90 (80%), Gaps = 7/90 (7%)
Query: 1 MKGGKSKSDTR--NAKLSVNKKPA---KAGRKS--GKAAKDPNKPKRPASAFFVFMEEFR 53
MKG KSK +++ +AKL+VNKK A K GRK GK KDPNKPKRP SAFFVFME+FR
Sbjct: 1 MKGAKSKGESKKADAKLAVNKKGAAATKGGRKPAKGKEPKDPNKPKRPPSAFFVFMEDFR 60
Query: 54 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+Q+KKD+P NK+V+AVGKA G KWKS+SEA
Sbjct: 61 KQFKKDNPDNKAVSAVGKAAGAKWKSLSEA 90
>gi|388497036|gb|AFK36584.1| unknown [Medicago truncatula]
Length = 155
Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/90 (66%), Positives = 72/90 (80%), Gaps = 7/90 (7%)
Query: 1 MKGGKSKSDTR--NAKLSVNKKPA---KAGRKS--GKAAKDPNKPKRPASAFFVFMEEFR 53
MKG KSK +++ +AKL+VNKK A K GRK GK KDPNKPKRP SAFFVFME+FR
Sbjct: 1 MKGAKSKGESKKADAKLAVNKKGAVATKGGRKPAKGKEPKDPNKPKRPPSAFFVFMEDFR 60
Query: 54 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+Q+KKD+P NK+V+AVGKA G KWKS+SEA
Sbjct: 61 KQFKKDNPDNKAVSAVGKAAGAKWKSLSEA 90
>gi|356508616|ref|XP_003523051.1| PREDICTED: HMG1/2-like protein-like [Glycine max]
Length = 152
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 71/89 (79%), Gaps = 6/89 (6%)
Query: 1 MKGGKSKSDTR--NAKLSVNKKPAKAGRKS----GKAAKDPNKPKRPASAFFVFMEEFRE 54
MKGGKSK++++ +AKL+VNKK A + GKAAKDPNKPKRP SAFFVFMEEFR+
Sbjct: 1 MKGGKSKTESKRADAKLAVNKKGAATKTRKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60
Query: 55 QYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+ K+HP NK+V+AVGKA G KWK+MS+A
Sbjct: 61 VFNKEHPDNKAVSAVGKAAGAKWKTMSDA 89
>gi|351725567|ref|NP_001236841.1| HMG1/2-like protein [Glycine max]
gi|123379|sp|P26585.1|HMGL_SOYBN RecName: Full=HMG1/2-like protein; AltName: Full=Protein SB11
gi|18645|emb|CAA41200.1| HMG-1 like protein gene [Glycine max]
Length = 152
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/89 (66%), Positives = 72/89 (80%), Gaps = 6/89 (6%)
Query: 1 MKGGKSKSDTRNA--KLSVNKK-PAKAGRKS---GKAAKDPNKPKRPASAFFVFMEEFRE 54
MKGGKSK++++ A KL+VNKK A RK GKAAKDPNKPKRP SAFFVFMEEFR+
Sbjct: 1 MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60
Query: 55 QYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+ K+HP+NK+V+AVGKA G KWK+MS+A
Sbjct: 61 VFNKEHPENKAVSAVGKAAGAKWKTMSDA 89
>gi|351723773|ref|NP_001235499.1| uncharacterized protein LOC100305957 [Glycine max]
gi|255627099|gb|ACU13894.1| unknown [Glycine max]
Length = 142
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/80 (70%), Positives = 65/80 (81%), Gaps = 1/80 (1%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRK-SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN 63
K+KSD + A + +K A AGRK S KAAKDPNKPK P SAFFVFM EFREQ+KK+HP N
Sbjct: 3 KAKSDAKAADSRLKRKGAGAGRKQSKKAAKDPNKPKGPPSAFFVFMSEFREQFKKEHPNN 62
Query: 64 KSVAAVGKAGGEKWKSMSEA 83
KSVA VGKAGG+KWKS+S+A
Sbjct: 63 KSVAVVGKAGGDKWKSLSDA 82
>gi|449456873|ref|XP_004146173.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|449495123|ref|XP_004159740.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|63020536|gb|AAY26151.1| high mobility group protein [Cucumis sativus]
Length = 146
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/83 (73%), Positives = 68/83 (81%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK + + K A A +KS KAAKDPNKPKRPASAFFVFMEEFR+QYKK+H
Sbjct: 1 MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
Query: 61 PKNKSVAAVGKAGGEKWKSMSEA 83
P NKSVAAVGKAGG+KWKSMS+A
Sbjct: 61 PNNKSVAAVGKAGGDKWKSMSDA 83
>gi|1052956|gb|AAC50019.1| high mobility group protein 2 HMG2 [Ipomoea nil]
Length = 146
Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/83 (65%), Positives = 68/83 (81%), Gaps = 2/83 (2%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK+ + N KL+V K+ + +KS K+ KDPNKPKRP SAFFVFME+FR+ YK+ H
Sbjct: 1 MKGGKSKAKSDN-KLAVKKRGCET-KKSKKSVKDPNKPKRPPSAFFVFMEDFRKTYKEKH 58
Query: 61 PKNKSVAAVGKAGGEKWKSMSEA 83
P NKSVAAVGKAGG+KWK +++A
Sbjct: 59 PNNKSVAAVGKAGGDKWKQLTDA 81
>gi|388504718|gb|AFK40425.1| unknown [Lotus japonicus]
Length = 152
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 73/91 (80%), Gaps = 10/91 (10%)
Query: 1 MKGGKSKSDTRNA--KLSVNKK------PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEF 52
MKGGKS+++++ A KL+VNKK PA+ + GKAAKDPNKPKRP SAFFVFME+F
Sbjct: 1 MKGGKSRTESKRAEPKLAVNKKAGGATKPARGAK--GKAAKDPNKPKRPPSAFFVFMEDF 58
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
R+ + K++P+NK+V+AVGKA G KWKSMSEA
Sbjct: 59 RKIFNKENPENKAVSAVGKAAGAKWKSMSEA 89
>gi|729736|sp|P40619.1|HMGL_IPONI RecName: Full=HMG1/2-like protein
Length = 144
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/83 (66%), Positives = 66/83 (79%), Gaps = 2/83 (2%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK+ + N KL+V KK A +K+ KA KDPNKPKRP SAFFVFME+FR+ YK+ H
Sbjct: 1 MKGGKSKAKSDN-KLAV-KKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKH 58
Query: 61 PKNKSVAAVGKAGGEKWKSMSEA 83
P NKSVA VGKAGG+KWK ++ A
Sbjct: 59 PNNKSVAVVGKAGGDKWKQLTAA 81
>gi|413935044|gb|AFW69595.1| high mobility group protein1 [Zea mays]
Length = 97
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 73/91 (80%), Gaps = 7/91 (7%)
Query: 1 MKGGKSKSDTR-NAKLSVN----KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQ 55
MKG KSK + +AKL+V +KPAK GRK GKA KDPNKPKR SAFFVFMEEFR++
Sbjct: 1 MKGAKSKGAAKADAKLAVKSKGAEKPAK-GRK-GKAGKDPNKPKRAPSAFFVFMEEFRKE 58
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEAVSG 86
+K+ +PKNKSVAAVGKA G++WKS+SE++ G
Sbjct: 59 FKEKNPKNKSVAAVGKAAGDRWKSLSESIVG 89
>gi|357484153|ref|XP_003612363.1| HMG1/2-like protein [Medicago truncatula]
gi|355513698|gb|AES95321.1| HMG1/2-like protein [Medicago truncatula]
Length = 94
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 65/85 (76%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
K+ SD + A + +K A G K K AKDPNKPKRP SAFFVFM EFRE++KK++P NK
Sbjct: 3 KAVSDAKPADNRLKRKGAGTGTKQSKKAKDPNKPKRPPSAFFVFMSEFRERFKKENPSNK 62
Query: 65 SVAAVGKAGGEKWKSMSEAVSGLVL 89
SVA VGKAGG++WK++S+AV L+L
Sbjct: 63 SVAVVGKAGGKEWKALSDAVRILLL 87
>gi|2894109|emb|CAA05365.1| high mobility group protein [Solanum tuberosum]
Length = 141
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 63/82 (76%), Gaps = 2/82 (2%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK+ + KL V KK A +K+ AAKDPNKPKRP SAFFVFMEEFR+ YK+ H
Sbjct: 1 MKGAKSKAKA-DTKLGVRKK-ATESKKAKNAAKDPNKPKRPPSAFFVFMEEFRKTYKEKH 58
Query: 61 PKNKSVAAVGKAGGEKWKSMSE 82
P NKSVA VGKAGG+KWK +S+
Sbjct: 59 PNNKSVAVVGKAGGDKWKQLSD 80
>gi|218198917|gb|EEC81344.1| hypothetical protein OsI_24530 [Oryza sativa Indica Group]
Length = 163
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/88 (64%), Positives = 70/88 (79%), Gaps = 6/88 (6%)
Query: 1 MKGGKSKSDTR-NAKLSVN----KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQ 55
MKG KSK + +AKL+V +KPA GRK GKA KDPNKPKR SAFFVFMEEFR++
Sbjct: 1 MKGAKSKGAAKPDAKLAVKSKGAEKPAAKGRK-GKAGKDPNKPKRAPSAFFVFMEEFRKE 59
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+K+ +PKNKSVAAVGKA G++WKS++EA
Sbjct: 60 FKEKNPKNKSVAAVGKAAGDRWKSLTEA 87
>gi|309243128|gb|ADD74180.2| high mobility group box 3 protein [Gossypium hirsutum]
Length = 139
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 71/83 (85%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGG++KSD+ A + K A AG+++ KAAKDPNKPKRPASAFFVFMEEFR+QYK+ +
Sbjct: 1 MKGGQTKSDSMQAGNKLKGKGAGAGKRAKKAAKDPNKPKRPASAFFVFMEEFRKQYKEAN 60
Query: 61 PKNKSVAAVGKAGGEKWKSMSEA 83
P N+SV+AVGKAGGEKWKSM++A
Sbjct: 61 PDNRSVSAVGKAGGEKWKSMTDA 83
>gi|115470082|ref|NP_001058640.1| Os06g0728000 [Oryza sativa Japonica Group]
gi|3885888|gb|AAC78104.1| high mobility group protein [Oryza sativa Japonica Group]
gi|23345287|gb|AAN28722.1| HMG1 protein [Oryza sativa Indica Group]
gi|30267833|gb|AAP21609.1| HMGB1 [Oryza sativa Indica Group]
gi|54291150|dbj|BAD61823.1| HMGB1 [Oryza sativa Japonica Group]
gi|113596680|dbj|BAF20554.1| Os06g0728000 [Oryza sativa Japonica Group]
gi|213959190|gb|ACJ54929.1| HMG protein [Oryza sativa Japonica Group]
gi|215692803|dbj|BAG88247.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222636260|gb|EEE66392.1| hypothetical protein OsJ_22728 [Oryza sativa Japonica Group]
Length = 157
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/88 (64%), Positives = 70/88 (79%), Gaps = 6/88 (6%)
Query: 1 MKGGKSKSDTR-NAKLSVN----KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQ 55
MKG KSK + +AKL+V +KPA GRK GKA KDPNKPKR SAFFVFMEEFR++
Sbjct: 1 MKGAKSKGAAKPDAKLAVKSKGAEKPAAKGRK-GKAGKDPNKPKRAPSAFFVFMEEFRKE 59
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+K+ +PKNKSVAAVGKA G++WKS++EA
Sbjct: 60 FKEKNPKNKSVAAVGKAAGDRWKSLTEA 87
>gi|194466165|gb|ACF74313.1| high mobility group protein 2 [Arachis hypogaea]
Length = 153
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 70/90 (77%), Gaps = 7/90 (7%)
Query: 1 MKGGKSKSDTR--NAKLSVNKK--PAKAGRKSGK---AAKDPNKPKRPASAFFVFMEEFR 53
MKG KSK++++ +AKL+VNKK PA G + AAKDPNK KRP SAFFVFMEEFR
Sbjct: 1 MKGAKSKAESKRGDAKLAVNKKGTPATKGGRKTGKGKAAKDPNKLKRPPSAFFVFMEEFR 60
Query: 54 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+Q+ KDHP+NK+V+AVGKA G KWK MS+A
Sbjct: 61 KQFNKDHPENKAVSAVGKAAGAKWKQMSDA 90
>gi|413935042|gb|AFW69593.1| high mobility group protein1 [Zea mays]
Length = 220
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 71/88 (80%), Gaps = 7/88 (7%)
Query: 1 MKGGKSKSDTR-NAKLSVN----KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQ 55
MKG KSK + +AKL+V +KPAK GRK GKA KDPNKPKR SAFFVFMEEFR++
Sbjct: 1 MKGAKSKGAAKADAKLAVKSKGAEKPAK-GRK-GKAGKDPNKPKRAPSAFFVFMEEFRKE 58
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+K+ +PKNKSVAAVGKA G++WKS+SE+
Sbjct: 59 FKEKNPKNKSVAAVGKAAGDRWKSLSES 86
>gi|18419623|gb|AAL69379.1|AF462216_1 HMG-domain containing protein [Narcissus pseudonarcissus]
Length = 106
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 66/89 (74%), Gaps = 8/89 (8%)
Query: 1 MKGGKSKSDTR---NAKLSVNKKPAKAGRKS-----GKAAKDPNKPKRPASAFFVFMEEF 52
MKGGKSK+DT +A+LSV +K A+ K KA KDPNKPKRP SAFFVFMEEF
Sbjct: 1 MKGGKSKADTSKKADARLSVKRKAAEKPAKKPVVKKSKAEKDPNKPKRPPSAFFVFMEEF 60
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
R+Q+K+ +P NK V+ VGKA G+KWKSMS
Sbjct: 61 RKQFKEKNPNNKQVSVVGKAAGDKWKSMS 89
>gi|397396|emb|CAA46876.1| DNA-binding protein [Zea mays]
Length = 168
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 71/88 (80%), Gaps = 7/88 (7%)
Query: 1 MKGGKSKSDTR-NAKLSVN----KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQ 55
MKG KSK + +AKL+V +KPAK GRK GKA KDPNKPKR SAFFVFMEEFR++
Sbjct: 12 MKGAKSKGAAKADAKLAVKSKGAEKPAK-GRK-GKAGKDPNKPKRAPSAFFVFMEEFRKE 69
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+K+ +PKNKSVAAVGKA G++WKS+SE+
Sbjct: 70 FKEKNPKNKSVAAVGKAAGDRWKSLSES 97
>gi|293335943|ref|NP_001167650.1| high mobility group protein1 [Zea mays]
gi|123378|sp|P27347.1|MNB1B_MAIZE RecName: Full=DNA-binding protein MNB1B; AltName: Full=HMG1-like
protein
gi|22329|emb|CAA41220.1| high mobility group protein [Zea mays]
gi|5441502|emb|CAB46752.1| HMGa protein [Zea mays]
gi|22347617|gb|AAM95942.1| nucleosome/chromatin assembly factor group D protein [Zea mays]
gi|194701148|gb|ACF84658.1| unknown [Zea mays]
gi|194702316|gb|ACF85242.1| unknown [Zea mays]
gi|194703290|gb|ACF85729.1| unknown [Zea mays]
gi|195606194|gb|ACG24927.1| DNA-binding protein MNB1B [Zea mays]
gi|195612638|gb|ACG28149.1| DNA-binding protein MNB1B [Zea mays]
gi|195618138|gb|ACG30899.1| DNA-binding protein MNB1B [Zea mays]
gi|195618904|gb|ACG31282.1| DNA-binding protein MNB1B [Zea mays]
gi|195619012|gb|ACG31336.1| DNA-binding protein MNB1B [Zea mays]
gi|195619124|gb|ACG31392.1| DNA-binding protein MNB1B [Zea mays]
gi|195638824|gb|ACG38880.1| DNA-binding protein MNB1B [Zea mays]
gi|195642004|gb|ACG40470.1| DNA-binding protein MNB1B [Zea mays]
gi|223972731|gb|ACN30553.1| unknown [Zea mays]
gi|223972797|gb|ACN30586.1| unknown [Zea mays]
gi|223973279|gb|ACN30827.1| unknown [Zea mays]
gi|223974975|gb|ACN31675.1| unknown [Zea mays]
gi|413935043|gb|AFW69594.1| high mobility group protein1 [Zea mays]
Length = 157
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 71/88 (80%), Gaps = 7/88 (7%)
Query: 1 MKGGKSKSDTR-NAKLSVN----KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQ 55
MKG KSK + +AKL+V +KPAK GRK GKA KDPNKPKR SAFFVFMEEFR++
Sbjct: 1 MKGAKSKGAAKADAKLAVKSKGAEKPAK-GRK-GKAGKDPNKPKRAPSAFFVFMEEFRKE 58
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+K+ +PKNKSVAAVGKA G++WKS+SE+
Sbjct: 59 FKEKNPKNKSVAAVGKAAGDRWKSLSES 86
>gi|357123079|ref|XP_003563240.1| PREDICTED: DNA-binding protein MNB1B-like [Brachypodium
distachyon]
Length = 160
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 69/88 (78%), Gaps = 6/88 (6%)
Query: 1 MKGGKSKSDTR-NAKLSVN----KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQ 55
MKG KSK + + KL+V +KPA GRK GKA KDPNKPKR SAFFVFM+EFR++
Sbjct: 1 MKGAKSKGAVKADTKLAVKSKGAEKPAAKGRK-GKAGKDPNKPKRAPSAFFVFMDEFRKE 59
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+K+ +PKNKSVAAVGKA GE+WK++SE+
Sbjct: 60 FKEKNPKNKSVAAVGKAAGERWKTLSES 87
>gi|295913113|gb|ADG57819.1| transcription factor [Lycoris longituba]
Length = 108
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 65/85 (76%), Gaps = 2/85 (2%)
Query: 1 MKGGKSKSDTRNA--KLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKK 58
MKG K K+ + A KL+V K K K KA KDPNKPKR ASAFFVFME FR+++K+
Sbjct: 1 MKGRKPKASSTKATDKLAVKKGAPKKTEKKVKAGKDPNKPKRAASAFFVFMEGFRKEFKE 60
Query: 59 DHPKNKSVAAVGKAGGEKWKSMSEA 83
+PKNKSVAAVGKAGGEKWKSMS+A
Sbjct: 61 KNPKNKSVAAVGKAGGEKWKSMSDA 85
>gi|125564627|gb|EAZ10007.1| hypothetical protein OsI_32309 [Oryza sativa Indica Group]
Length = 139
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 62/86 (72%), Gaps = 9/86 (10%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
+S+S +++LSV K KA KDPNKPKRP SAFFVFME+FR+ YK+ HP K
Sbjct: 4 RSRSSNGDSRLSVRKT---------KAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVK 54
Query: 65 SVAAVGKAGGEKWKSMSEAVSGLVLV 90
V+ +GKAGG+KWKSM++A+ G V+V
Sbjct: 55 QVSVIGKAGGDKWKSMTDAIGGYVVV 80
>gi|222642048|gb|EEE70180.1| hypothetical protein OsJ_30257 [Oryza sativa Japonica Group]
Length = 139
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 62/86 (72%), Gaps = 9/86 (10%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
+S+S +++LSV K KA KDPNKPKRP SAFFVFME+FR+ YK+ HP K
Sbjct: 4 RSRSSNGDSRLSVRKT---------KAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVK 54
Query: 65 SVAAVGKAGGEKWKSMSEAVSGLVLV 90
V+ +GKAGG+KWKSM++A+ G V+V
Sbjct: 55 QVSVIGKAGGDKWKSMTDAIRGYVVV 80
>gi|148250187|gb|ABQ53545.1| HMG1 protein [Arachis diogoi]
Length = 141
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 60/77 (77%), Gaps = 5/77 (6%)
Query: 12 NAKLSVNKKPAKAGRKSGK-----AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSV 66
+AKL+VNKK A + K AAKDPNKPKRP SAFFVFMEEFR+Q+ KDHP+NK+V
Sbjct: 2 DAKLAVNKKGTPAAKGGRKTGKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKDHPENKAV 61
Query: 67 AAVGKAGGEKWKSMSEA 83
+AVGKA G KWK MS+A
Sbjct: 62 SAVGKAAGAKWKQMSDA 78
>gi|116778852|gb|ABK21026.1| unknown [Picea sitchensis]
gi|116782574|gb|ABK22556.1| unknown [Picea sitchensis]
gi|116782678|gb|ABK22606.1| unknown [Picea sitchensis]
gi|116782786|gb|ABK22657.1| unknown [Picea sitchensis]
gi|116782898|gb|ABK22712.1| unknown [Picea sitchensis]
gi|116791878|gb|ABK26144.1| unknown [Picea sitchensis]
gi|148907501|gb|ABR16881.1| unknown [Picea sitchensis]
gi|224284566|gb|ACN40016.1| unknown [Picea sitchensis]
gi|224285212|gb|ACN40332.1| unknown [Picea sitchensis]
gi|224286734|gb|ACN41070.1| unknown [Picea sitchensis]
Length = 157
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 67/97 (69%), Gaps = 14/97 (14%)
Query: 1 MKGGKSKSDTRNAKLSVNKKP--------------AKAGRKSGKAAKDPNKPKRPASAFF 46
MKGGK+K++ + V +KP ++ +K KAAKDPNKPKRPASAFF
Sbjct: 1 MKGGKAKNEASSTLKKVEEKPIGKRKTAAKESKVSSRQEKKGRKAAKDPNKPKRPASAFF 60
Query: 47 VFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
VFME+FR+ YK+ +P KSV+ VGKAGG+KWKSMSEA
Sbjct: 61 VFMEDFRKTYKEKNPNVKSVSVVGKAGGDKWKSMSEA 97
>gi|295913458|gb|ADG57979.1| transcription factor [Lycoris longituba]
Length = 179
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/89 (59%), Positives = 64/89 (71%), Gaps = 8/89 (8%)
Query: 1 MKGGKSKSDTR---NAKLSVNKKPAKAGRKSGKAA-----KDPNKPKRPASAFFVFMEEF 52
MKGGKSK+DT +A+LSV +K A+ K KDPNKPKRP SAFFVFMEEF
Sbjct: 19 MKGGKSKADTSKKADARLSVKRKAAEKPAKKPAVKKAKEGKDPNKPKRPPSAFFVFMEEF 78
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
R+Q+K+ +P NK V+ VGKA G+KWKSMS
Sbjct: 79 RKQFKEKNPNNKQVSVVGKAAGDKWKSMS 107
>gi|295913708|gb|ADG58095.1| transcription factor [Lycoris longituba]
Length = 190
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/89 (59%), Positives = 64/89 (71%), Gaps = 8/89 (8%)
Query: 1 MKGGKSKSDTR---NAKLSVNKKPAKAGRKSGKAA-----KDPNKPKRPASAFFVFMEEF 52
MKGGKSK+DT +A+LSV +K A+ K KDPNKPKRP SAFFVFMEEF
Sbjct: 29 MKGGKSKADTSKKADARLSVKRKAAEKPVKKPAVKKAKEGKDPNKPKRPPSAFFVFMEEF 88
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
R+Q+K+ +P NK V+ VGKA G+KWKSMS
Sbjct: 89 RKQFKEKNPNNKQVSVVGKAAGDKWKSMS 117
>gi|295913526|gb|ADG58011.1| transcription factor [Lycoris longituba]
Length = 171
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/89 (59%), Positives = 64/89 (71%), Gaps = 8/89 (8%)
Query: 1 MKGGKSKSDTR---NAKLSVNKKPAKAGRKSGKAA-----KDPNKPKRPASAFFVFMEEF 52
MKGGKSK+DT +A+LSV +K A+ K KDPNKPKRP SAFFVFMEEF
Sbjct: 14 MKGGKSKADTSKKADARLSVKRKAAEKPVKKPAVKKAKEGKDPNKPKRPPSAFFVFMEEF 73
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
R+Q+K+ +P NK V+ VGKA G+KWKSMS
Sbjct: 74 RKQFKEKNPNNKQVSVVGKAAGDKWKSMS 102
>gi|295913696|gb|ADG58089.1| transcription factor [Lycoris longituba]
Length = 183
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 64/91 (70%), Gaps = 8/91 (8%)
Query: 1 MKGGKSKSDTR---NAKLSVNKKPAKAGRKSGKAAK-----DPNKPKRPASAFFVFMEEF 52
MKGGKSK DT +AKLSV +K A+ K K DPNKPKRP SAFFVFMEEF
Sbjct: 22 MKGGKSKPDTSKKADAKLSVKRKAAEKPAKKPAVKKAKAGTDPNKPKRPPSAFFVFMEEF 81
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
R+Q+K+ +P NK V+ VGKA G+KWKSMS A
Sbjct: 82 RKQFKEKNPNNKQVSVVGKAAGDKWKSMSAA 112
>gi|346467231|gb|AEO33460.1| hypothetical protein [Amblyomma maculatum]
Length = 115
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 50/61 (81%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLV 88
GK KDPNKPKRP + FFVFME FR+QYK+ HPKNKSVA VGKAGGEKWKS+SE+ +
Sbjct: 3 GKGEKDPNKPKRPPTGFFVFMEGFRKQYKEAHPKNKSVAVVGKAGGEKWKSLSESEKAVF 62
Query: 89 L 89
L
Sbjct: 63 L 63
>gi|295913700|gb|ADG58091.1| transcription factor [Lycoris longituba]
Length = 162
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/89 (59%), Positives = 64/89 (71%), Gaps = 8/89 (8%)
Query: 1 MKGGKSKSDTR---NAKLSVNKKPAKAGRKSGKA-----AKDPNKPKRPASAFFVFMEEF 52
MKGGKSK+DT +A+LSV +K A+ K KDPNKPKRP SAFFVFMEEF
Sbjct: 1 MKGGKSKADTSKKADARLSVKRKAAEKPVKKPAVKKAKEGKDPNKPKRPPSAFFVFMEEF 60
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
R+Q+K+ +P NK V+ VGKA G+KWKSMS
Sbjct: 61 RKQFKEKNPNNKQVSVVGKAAGDKWKSMS 89
>gi|295913475|gb|ADG57987.1| transcription factor [Lycoris longituba]
Length = 162
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/89 (59%), Positives = 64/89 (71%), Gaps = 8/89 (8%)
Query: 1 MKGGKSKSDTR---NAKLSVNKKPAKAGRKSGKA-----AKDPNKPKRPASAFFVFMEEF 52
MKGGKSK+DT +A+LSV +K A+ K KDPNKPKRP SAFFVFMEEF
Sbjct: 1 MKGGKSKADTSKKADARLSVKRKAAEKPVKKPVVKKAKEGKDPNKPKRPPSAFFVFMEEF 60
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
R+Q+K+ +P NK V+ VGKA G+KWKSMS
Sbjct: 61 RKQFKEKNPNNKQVSVVGKAAGDKWKSMS 89
>gi|357484151|ref|XP_003612362.1| HMG1/2-like protein [Medicago truncatula]
gi|355513697|gb|AES95320.1| HMG1/2-like protein [Medicago truncatula]
Length = 140
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 61/79 (77%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
K+ SD + A + +K A G K K AKDPNKPKRP SAFFVFM EFRE++KK++P NK
Sbjct: 3 KAVSDAKPADNRLKRKGAGTGTKQSKKAKDPNKPKRPPSAFFVFMSEFRERFKKENPSNK 62
Query: 65 SVAAVGKAGGEKWKSMSEA 83
SVA VGKAGG++WK++S+A
Sbjct: 63 SVAVVGKAGGKEWKALSDA 81
>gi|4468042|emb|CAB37859.1| unnamed protein product [Vicia faba var. minor]
Length = 74
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/50 (86%), Positives = 46/50 (92%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KDPNKPKRP SAFFVFM +FREQYKKDHP NKSVAAVGKA GE+WKS+SE
Sbjct: 1 KDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSE 50
>gi|449521910|ref|XP_004167972.1| PREDICTED: high mobility group B protein 1-like [Cucumis sativus]
Length = 112
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/78 (60%), Positives = 61/78 (78%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A + +K + +K KA KDPNKPKRP SAFFVF+EEFR++YK+++P K+V+AVG
Sbjct: 28 RKAVVKADKGIKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEYKRENPNVKAVSAVG 87
Query: 71 KAGGEKWKSMSEAVSGLV 88
KAGGEKWKS+S AVS +V
Sbjct: 88 KAGGEKWKSLSHAVSIVV 105
>gi|295913393|gb|ADG57949.1| transcription factor [Lycoris longituba]
Length = 162
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 64/91 (70%), Gaps = 8/91 (8%)
Query: 1 MKGGKSKSDTR---NAKLSVNKKPAKAGRKSGKAAK-----DPNKPKRPASAFFVFMEEF 52
MKGGKSK DT +AKLSV +K A+ K K DPNKPKRP SAFFVFMEEF
Sbjct: 1 MKGGKSKPDTSKKADAKLSVKRKAAEKPAKKPAVKKAKAGTDPNKPKRPPSAFFVFMEEF 60
Query: 53 REQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
R+Q+K+ +P NK V+ VGKA G+KWKSMS A
Sbjct: 61 RKQFKEKNPNNKQVSVVGKAAGDKWKSMSAA 91
>gi|436424|emb|CAA54168.1| HMG 1 protein [Pisum sativum]
Length = 154
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 68/90 (75%), Gaps = 7/90 (7%)
Query: 1 MKGGKSKSDTRNA--KLSVNKKPAKAGRKSGKAA-----KDPNKPKRPASAFFVFMEEFR 53
MKGGKSK +++ A KL+VNKK A A + K A KDPNKPKRP SAFFVFME+FR
Sbjct: 1 MKGGKSKGESKKAETKLAVNKKGAPATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMEDFR 60
Query: 54 EQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+Q+KK + NK+V+AVGKA G KWKSM+EA
Sbjct: 61 KQFKKGNADNKAVSAVGKAAGAKWKSMTEA 90
>gi|2196548|gb|AAB61215.1| DNA-binding protein [Nicotiana tabacum]
Length = 142
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 67/83 (80%), Gaps = 2/83 (2%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK+ ++KL V +K A +K+ KAAKDPNKPKRP SAFFVFMEEFR+ YK+ H
Sbjct: 1 MKGGKSKAGA-DSKLGV-RKKATETKKAKKAAKDPNKPKRPPSAFFVFMEEFRKTYKEKH 58
Query: 61 PKNKSVAAVGKAGGEKWKSMSEA 83
P NKSVAAVGKAGG+ WK +SEA
Sbjct: 59 PNNKSVAAVGKAGGDAWKKLSEA 81
>gi|297736623|emb|CBI25494.3| unnamed protein product [Vitis vinifera]
Length = 128
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 57/74 (77%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A L +K K +K A KDPNKPKRP SAFFVF+EEFR+ YK++HP K+V+AVG
Sbjct: 53 RKAALKADKSTKKLAKKEKLAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVG 112
Query: 71 KAGGEKWKSMSEAV 84
KAGGEKWKS+SEAV
Sbjct: 113 KAGGEKWKSLSEAV 126
>gi|224112525|ref|XP_002316220.1| high mobility group family [Populus trichocarpa]
gi|222865260|gb|EEF02391.1| high mobility group family [Populus trichocarpa]
Length = 176
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 54/73 (73%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A L N+ K +K KDPNKPKRP SAFFVF+EEFR+ YK++HP K+V+AVG
Sbjct: 29 RKAALKANESSKKRVKKEKITKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVG 88
Query: 71 KAGGEKWKSMSEA 83
KAGGEKWKS+S A
Sbjct: 89 KAGGEKWKSLSAA 101
>gi|449455609|ref|XP_004145545.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|449511984|ref|XP_004164108.1| PREDICTED: HMG1/2-like protein-like isoform 1 [Cucumis sativus]
gi|449511988|ref|XP_004164109.1| PREDICTED: HMG1/2-like protein-like isoform 2 [Cucumis sativus]
Length = 146
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/84 (59%), Positives = 66/84 (78%), Gaps = 1/84 (1%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKD 59
MKGGKS+S+++ A + K A +K K A DPNKPKRPASAFFVFMEEFR+++ ++
Sbjct: 1 MKGGKSRSESKKADTKLAVKKGAAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60
Query: 60 HPKNKSVAAVGKAGGEKWKSMSEA 83
+P NK+V+AVGKA G+KWKSMS+A
Sbjct: 61 NPNNKAVSAVGKAAGQKWKSMSDA 84
>gi|295913099|gb|ADG57812.1| transcription factor [Lycoris longituba]
Length = 120
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/55 (76%), Positives = 50/55 (90%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
KA KDPNKPKR SAFFVFME+FR+++K+ +PKNKSVAAVGKAGGE+WKSMS+A
Sbjct: 1 AKAGKDPNKPKRAPSAFFVFMEDFRKEFKEKNPKNKSVAAVGKAGGERWKSMSDA 55
>gi|225448398|ref|XP_002269398.1| PREDICTED: high mobility group B protein 1 isoform 1 [Vitis
vinifera]
gi|147854340|emb|CAN83423.1| hypothetical protein VITISV_023376 [Vitis vinifera]
Length = 166
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 56/73 (76%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A L +K K +K A KDPNKPKRP SAFFVF+EEFR+ YK++HP K+V+AVG
Sbjct: 29 RKAALKADKSTKKLAKKEKLAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVG 88
Query: 71 KAGGEKWKSMSEA 83
KAGGEKWKS+SEA
Sbjct: 89 KAGGEKWKSLSEA 101
>gi|295913196|gb|ADG57857.1| transcription factor [Lycoris longituba]
Length = 143
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/54 (75%), Positives = 49/54 (90%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
KA KDPNKPKRP SAFFVFME FR+++K +PKNKS+AAVGKAGGE+WKSMS++
Sbjct: 25 KAGKDPNKPKRPPSAFFVFMEGFRKEFKDKNPKNKSIAAVGKAGGERWKSMSDS 78
>gi|414886615|tpg|DAA62629.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 123
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 57/80 (71%), Gaps = 9/80 (11%)
Query: 4 GKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN 63
+++S +++LSV K KA KDPNKPKRP SAFFVFMEEFR+ YK+ HP
Sbjct: 3 SRARSTAGDSRLSVRK---------TKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNV 53
Query: 64 KSVAAVGKAGGEKWKSMSEA 83
K V+ +GKAGG+KWKS+S+A
Sbjct: 54 KQVSVIGKAGGDKWKSLSDA 73
>gi|225448400|ref|XP_002270185.1| PREDICTED: high mobility group B protein 1 isoform 2 [Vitis
vinifera]
Length = 156
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 56/73 (76%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A L +K K +K A KDPNKPKRP SAFFVF+EEFR+ YK++HP K+V+AVG
Sbjct: 29 RKAALKADKSTKKLAKKEKLAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVG 88
Query: 71 KAGGEKWKSMSEA 83
KAGGEKWKS+SEA
Sbjct: 89 KAGGEKWKSLSEA 101
>gi|449461783|ref|XP_004148621.1| PREDICTED: high mobility group B protein 1-like [Cucumis sativus]
Length = 169
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 57/73 (78%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A + +K + +K KA KDPNKPKRP SAFFVF+EEFR++YK+++P K+V+AVG
Sbjct: 28 RKAVVKADKGIKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEYKRENPNVKAVSAVG 87
Query: 71 KAGGEKWKSMSEA 83
KAGGEKWKS+S A
Sbjct: 88 KAGGEKWKSLSHA 100
>gi|414886614|tpg|DAA62628.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 118
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 57/80 (71%), Gaps = 9/80 (11%)
Query: 4 GKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN 63
+++S +++LSV K KA KDPNKPKRP SAFFVFMEEFR+ YK+ HP
Sbjct: 3 SRARSTAGDSRLSVRK---------TKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNV 53
Query: 64 KSVAAVGKAGGEKWKSMSEA 83
K V+ +GKAGG+KWKS+S+A
Sbjct: 54 KQVSVIGKAGGDKWKSLSDA 73
>gi|115480551|ref|NP_001063869.1| Os09g0551600 [Oryza sativa Japonica Group]
gi|50726318|dbj|BAD33893.1| putative HMGd1 [Oryza sativa Japonica Group]
gi|113632102|dbj|BAF25783.1| Os09g0551600 [Oryza sativa Japonica Group]
gi|213959176|gb|ACJ54922.1| HMG type nucleosome/chromatin assembly factor [Oryza sativa
Japonica Group]
gi|215694881|dbj|BAG90072.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 127
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 57/79 (72%), Gaps = 9/79 (11%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
+S+S +++LSV K KA KDPNKPKRP SAFFVFME+FR+ YK+ HP K
Sbjct: 4 RSRSSNGDSRLSVRKT---------KAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVK 54
Query: 65 SVAAVGKAGGEKWKSMSEA 83
V+ +GKAGG+KWKSM++A
Sbjct: 55 QVSVIGKAGGDKWKSMTDA 73
>gi|359386154|gb|AEV43366.1| group B HMG-box protein [Citrus sinensis]
Length = 165
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 55/73 (75%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A L ++ K + A KDPNKPKRP SAFFVF+EEFR+ YK++HP K+V+AVG
Sbjct: 29 RKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVG 88
Query: 71 KAGGEKWKSMSEA 83
KAGGEKWKS+++A
Sbjct: 89 KAGGEKWKSLTDA 101
>gi|414886617|tpg|DAA62631.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 119
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 57/79 (72%), Gaps = 9/79 (11%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
+++S +++LSV K KA KDPNKPKRP SAFFVFMEEFR+ YK+ HP K
Sbjct: 4 RARSTAGDSRLSVRK---------TKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVK 54
Query: 65 SVAAVGKAGGEKWKSMSEA 83
V+ +GKAGG+KWKS+S+A
Sbjct: 55 QVSVIGKAGGDKWKSLSDA 73
>gi|22135473|gb|AAM93217.1|AF527616_1 nucleasome/chromatin assembly factor D protein NFD101 [Zea mays]
gi|2196672|emb|CAA70045.1| HMGd1 [Zea mays]
gi|194698578|gb|ACF83373.1| unknown [Zea mays]
gi|414886616|tpg|DAA62630.1| TPA: HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 126
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 57/79 (72%), Gaps = 9/79 (11%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
+++S +++LSV K KA KDPNKPKRP SAFFVFMEEFR+ YK+ HP K
Sbjct: 4 RARSTAGDSRLSVRK---------TKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVK 54
Query: 65 SVAAVGKAGGEKWKSMSEA 83
V+ +GKAGG+KWKS+S+A
Sbjct: 55 QVSVIGKAGGDKWKSLSDA 73
>gi|162459697|ref|NP_001105649.1| HMG-like nucleosome/chromatin assembly factor D [Zea mays]
gi|17017392|gb|AAL33650.1|AF440221_1 HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 126
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 57/79 (72%), Gaps = 9/79 (11%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
+++S +++LSV K KA KDPNKPKRP SAFFVFMEEFR+ YK+ HP K
Sbjct: 4 RARSTAGDSRLSVRK---------TKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVK 54
Query: 65 SVAAVGKAGGEKWKSMSEA 83
V+ +GKAGG+KWKS+S+A
Sbjct: 55 QVSLIGKAGGDKWKSLSDA 73
>gi|729738|sp|P40621.1|HMGL_WHEAT RecName: Full=HMG1/2-like protein
gi|21803|emb|CAA77641.1| high mobility group protein [Triticum aestivum]
gi|114145392|dbj|BAF30985.1| high mobility globular protein [Triticum aestivum]
Length = 161
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 67/87 (77%), Gaps = 4/87 (4%)
Query: 1 MKGGKSKSDTR-NAKLSVNKKPAK---AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQY 56
MKG KSK + +AKL+V K A+ A K GKA KDPNKPKR SAFFVFM EFRE++
Sbjct: 1 MKGAKSKGAAKADAKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREEF 60
Query: 57 KKDHPKNKSVAAVGKAGGEKWKSMSEA 83
K+ +PKNKSVAAVGKA GE+WKS+SE+
Sbjct: 61 KQKNPKNKSVAAVGKAAGERWKSLSES 87
>gi|21592453|gb|AAM64404.1| putative HMG protein [Arabidopsis thaliana]
Length = 138
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 61/83 (73%), Gaps = 5/83 (6%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSG-KAAKDPNKPKRPASAFFVFMEEFREQYKKD 59
MKGG+SK++ S +++ GRK+G K KDPN+PKRP SAFFVF+E+FR+++
Sbjct: 1 MKGGESKAEA----TSTDQRLKTRGRKAGNKTKKDPNQPKRPPSAFFVFLEDFRKEFNLA 56
Query: 60 HPKNKSVAAVGKAGGEKWKSMSE 82
+P NKSVA VGKA G +WKSM++
Sbjct: 57 NPNNKSVATVGKAAGARWKSMTD 79
>gi|224098541|ref|XP_002311212.1| high mobility group family [Populus trichocarpa]
gi|222851032|gb|EEE88579.1| high mobility group family [Populus trichocarpa]
Length = 179
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 52/73 (71%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A L + K K KDP+KPKRP S+FFVF+EEFR+ YK++HP K+V+AVG
Sbjct: 29 RKAALKATESSKKRAAKEKITKKDPDKPKRPPSSFFVFLEEFRKIYKQEHPNMKAVSAVG 88
Query: 71 KAGGEKWKSMSEA 83
KAGGEKWKSMS A
Sbjct: 89 KAGGEKWKSMSAA 101
>gi|297836478|ref|XP_002886121.1| hypothetical protein ARALYDRAFT_480649 [Arabidopsis lyrata subsp.
lyrata]
gi|297331961|gb|EFH62380.1| hypothetical protein ARALYDRAFT_480649 [Arabidopsis lyrata subsp.
lyrata]
Length = 143
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 60/83 (72%), Gaps = 5/83 (6%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKD 59
MKGG+SK++ S +++ GRK GK K DPN+PKRP SAFFVF+E+FR+++
Sbjct: 1 MKGGESKAEA----TSTDQRLKTRGRKPGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLA 56
Query: 60 HPKNKSVAAVGKAGGEKWKSMSE 82
+P NKSVA VGKA G +WKSM+E
Sbjct: 57 NPNNKSVATVGKAAGARWKSMTE 79
>gi|302796105|ref|XP_002979815.1| hypothetical protein SELMODRAFT_18312 [Selaginella
moellendorffii]
gi|302807533|ref|XP_002985461.1| hypothetical protein SELMODRAFT_18313 [Selaginella
moellendorffii]
gi|300146924|gb|EFJ13591.1| hypothetical protein SELMODRAFT_18313 [Selaginella
moellendorffii]
gi|300152575|gb|EFJ19217.1| hypothetical protein SELMODRAFT_18312 [Selaginella
moellendorffii]
Length = 84
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 49/64 (76%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVS 85
+K KA+KDPN PKRP +AFFVF+E FR+QYK+DHP K VAAVGKA G+KW MSE+
Sbjct: 1 KKEKKASKDPNLPKRPPTAFFVFLESFRQQYKEDHPDVKGVAAVGKAAGDKWSKMSESEK 60
Query: 86 GLVL 89
+ +
Sbjct: 61 AVYV 64
>gi|118484946|gb|ABK94338.1| unknown [Populus trichocarpa]
Length = 171
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 52/73 (71%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A L + K K KDP+KPKRP S+FFVF+EEFR+ YK++HP K+V+AVG
Sbjct: 29 RKAALKATESSKKRAAKEKITKKDPDKPKRPPSSFFVFLEEFRKIYKQEHPNMKAVSAVG 88
Query: 71 KAGGEKWKSMSEA 83
KAGGEKWKSMS A
Sbjct: 89 KAGGEKWKSMSAA 101
>gi|950053|emb|CAA90679.1| HMG1/2-like protein [Hordeum vulgare subsp. vulgare]
Length = 160
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 66/87 (75%), Gaps = 4/87 (4%)
Query: 1 MKGGKSKSDTR-NAKLSVNKKPAK---AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQY 56
MKG KSK + + KL+V K A+ A K GKA KDPNKPKR SAFFVFM EFRE++
Sbjct: 1 MKGAKSKGAAKADTKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREEF 60
Query: 57 KKDHPKNKSVAAVGKAGGEKWKSMSEA 83
K+ +PKNKSVAAVGKA GE+WKS+SE+
Sbjct: 61 KQKNPKNKSVAAVGKAAGERWKSLSES 87
>gi|2832355|emb|CAA74403.1| HMG protein [Arabidopsis thaliana]
Length = 138
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 60/83 (72%), Gaps = 5/83 (6%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKD 59
MKGG+SK+ S +++ GRK+GK K DPN+PKRP SAFFVF+E+FR+++
Sbjct: 1 MKGGESKA----GATSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLA 56
Query: 60 HPKNKSVAAVGKAGGEKWKSMSE 82
+P NKSVA VGKA G +WKSM++
Sbjct: 57 NPNNKSVATVGKAAGARWKSMTD 79
>gi|13877775|gb|AAK43965.1|AF370150_1 putative HMG protein [Arabidopsis thaliana]
Length = 138
Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 61/83 (73%), Gaps = 5/83 (6%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKD 59
MKGG+SK++ S +++ GRK+GK K DPN+PKRP SAFFVF+E+FR+++
Sbjct: 1 MKGGESKAEA----TSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLA 56
Query: 60 HPKNKSVAAVGKAGGEKWKSMSE 82
+P NKSVA VGKA G +WK+M++
Sbjct: 57 NPNNKSVATVGKAAGARWKAMTD 79
>gi|15227862|ref|NP_179347.1| high mobility group B4 protein [Arabidopsis thaliana]
gi|145323080|ref|NP_001031364.2| high mobility group B4 protein [Arabidopsis thaliana]
gi|310947092|sp|Q42344.1|HMGB4_ARATH RecName: Full=High mobility group B protein 4; AltName: Full=High
mobility group protein G; Short=AtHMGgamma; Short=HMG
gamma; AltName: Full=Nucleosome/chromatin assembly
factor group D 04; Short=Nucleosome/chromatin assembly
factor group D 4
gi|13926177|gb|AAK49570.1|AF370562_1 putative HMG protein [Arabidopsis thaliana]
gi|4914377|gb|AAD32913.1| putative HMG protein [Arabidopsis thaliana]
gi|23297615|gb|AAN12992.1| putative HMG protein [Arabidopsis thaliana]
gi|330251557|gb|AEC06651.1| high mobility group B4 protein [Arabidopsis thaliana]
gi|330251558|gb|AEC06652.1| high mobility group B4 protein [Arabidopsis thaliana]
Length = 138
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 61/83 (73%), Gaps = 5/83 (6%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKD 59
MKGG+SK++ S +++ GRK+GK K DPN+PKRP SAFFVF+E+FR+++
Sbjct: 1 MKGGESKAEA----TSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLA 56
Query: 60 HPKNKSVAAVGKAGGEKWKSMSE 82
+P NKSVA VGKA G +WK+M++
Sbjct: 57 NPNNKSVATVGKAAGARWKAMTD 79
>gi|145328748|ref|NP_001077909.1| high mobility group B4 protein [Arabidopsis thaliana]
gi|222423535|dbj|BAH19737.1| AT2G17560 [Arabidopsis thaliana]
gi|330251559|gb|AEC06653.1| high mobility group B4 protein [Arabidopsis thaliana]
Length = 134
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 61/83 (73%), Gaps = 5/83 (6%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKD 59
MKGG+SK++ S +++ GRK+GK K DPN+PKRP SAFFVF+E+FR+++
Sbjct: 1 MKGGESKAEA----TSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLA 56
Query: 60 HPKNKSVAAVGKAGGEKWKSMSE 82
+P NKSVA VGKA G +WK+M++
Sbjct: 57 NPNNKSVATVGKAAGARWKAMTD 79
>gi|312281849|dbj|BAJ33790.1| unnamed protein product [Thellungiella halophila]
Length = 185
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 50/58 (86%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
RK +A KDPNKPKR SAFFVF+E+FR+ +KK++P K+V+AVGKAGG+KWKSMS+A
Sbjct: 41 RKEKRAKKDPNKPKRAPSAFFVFLEDFRQTFKKENPNVKAVSAVGKAGGQKWKSMSQA 98
>gi|302754440|ref|XP_002960644.1| hypothetical protein SELMODRAFT_75453 [Selaginella
moellendorffii]
gi|300171583|gb|EFJ38183.1| hypothetical protein SELMODRAFT_75453 [Selaginella
moellendorffii]
Length = 134
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 44/49 (89%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN+PK+PA+AFF+F+EEFR+ YKKDHP K VAA+GKAGG+ WKS+S+
Sbjct: 32 DPNQPKKPATAFFIFLEEFRQTYKKDHPDVKGVAAIGKAGGDMWKSLSD 80
>gi|168028752|ref|XP_001766891.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681870|gb|EDQ68293.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 160
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/50 (76%), Positives = 44/50 (88%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRPA+AFF+F+ EFRE +KK++P K VAAVGKAGGEKWKSMSEA
Sbjct: 53 DPNAPKRPATAFFIFLNEFREVFKKENPNVKGVAAVGKAGGEKWKSMSEA 102
>gi|157382898|gb|ABV48884.1| high mobility group protein B2 [Physcomitrella patens]
Length = 165
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/50 (76%), Positives = 44/50 (88%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRPA+AFF+F+ EFRE +KK++P K VAAVGKAGGEKWKSMSEA
Sbjct: 53 DPNAPKRPATAFFIFLNEFREVFKKENPNVKGVAAVGKAGGEKWKSMSEA 102
>gi|168032698|ref|XP_001768855.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168032700|ref|XP_001768856.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679967|gb|EDQ66408.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679968|gb|EDQ66409.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 110
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 46/57 (80%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
K GK KDPN PKRP +AFF+F+ EFRE +K+++P K V AVGKAGGEKWKSMSEA
Sbjct: 1 KGGKKLKDPNAPKRPPTAFFIFLNEFREVFKRENPNVKGVTAVGKAGGEKWKSMSEA 57
>gi|302803281|ref|XP_002983394.1| hypothetical protein SELMODRAFT_117986 [Selaginella
moellendorffii]
gi|300149079|gb|EFJ15736.1| hypothetical protein SELMODRAFT_117986 [Selaginella
moellendorffii]
Length = 123
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 44/49 (89%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN+PK+PA+AFF+F+EEFR+ YKKDHP K VAA+GKAGG+ WKS+S+
Sbjct: 18 DPNQPKKPATAFFIFLEEFRQTYKKDHPDVKGVAAIGKAGGDMWKSLSD 66
>gi|357517687|ref|XP_003629132.1| HMG1/2-like protein [Medicago truncatula]
gi|355523154|gb|AET03608.1| HMG1/2-like protein [Medicago truncatula]
Length = 75
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRK-SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN 63
K K+D++ A + +K A AGRK + KAAKDPNKPKRP SAFFVFM +FREQYKKDHP N
Sbjct: 3 KVKADSKPADNRLKRKGAGAGRKQTKKAAKDPNKPKRPPSAFFVFMSDFREQYKKDHPNN 62
Query: 64 KSVAAV 69
KSVAA+
Sbjct: 63 KSVAAL 68
>gi|116781378|gb|ABK22074.1| unknown [Picea sitchensis]
gi|224284710|gb|ACN40086.1| unknown [Picea sitchensis]
Length = 154
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 15 LSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGG 74
LS +KP K K KA KDPN+PKRP +AFFV++EEFR+ +K+ HP K V AVGKA G
Sbjct: 26 LSAKEKPNKRQAKP-KAVKDPNQPKRPPTAFFVYLEEFRKTFKQKHPDVKGVTAVGKACG 84
Query: 75 EKWKSMSEAVSGLVL 89
+KWK MSEA L
Sbjct: 85 DKWKEMSEAEKAPYL 99
>gi|414590133|tpg|DAA40704.1| TPA: hypothetical protein ZEAMMB73_374315 [Zea mays]
Length = 140
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 55/79 (69%), Gaps = 9/79 (11%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
+++S +++LSV K K KDPNKPKRP +AFFVFMEEFR+ YK+ HP K
Sbjct: 24 RARSGGGDSRLSVRKT---------KVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVK 74
Query: 65 SVAAVGKAGGEKWKSMSEA 83
V+ +GKAGG+ WKS+S+A
Sbjct: 75 QVSVIGKAGGDMWKSLSDA 93
>gi|346467547|gb|AEO33618.1| hypothetical protein [Amblyomma maculatum]
Length = 146
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/54 (72%), Positives = 49/54 (90%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
KAAKDPNKPKR SAFFVF++EFR+++K+ +P+NKSVAAV KAGG +WKSMS+A
Sbjct: 34 KAAKDPNKPKRAPSAFFVFLDEFRKEFKEKNPENKSVAAVTKAGGARWKSMSDA 87
>gi|297819892|ref|XP_002877829.1| hypothetical protein ARALYDRAFT_323737 [Arabidopsis lyrata subsp.
lyrata]
gi|297323667|gb|EFH54088.1| hypothetical protein ARALYDRAFT_323737 [Arabidopsis lyrata subsp.
lyrata]
Length = 185
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 49/58 (84%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
RK KA KDPNKPKR SAFFVF+E+FR +KK++P K+V+AVGKAGG+KWKSMS+A
Sbjct: 41 RKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQA 98
>gi|42572635|ref|NP_974413.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|222423104|dbj|BAH19531.1| AT3G51880 [Arabidopsis thaliana]
gi|332645335|gb|AEE78856.1| high mobility group protein B1 [Arabidopsis thaliana]
Length = 185
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 20 KPAK-AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KP K RK KA KDPNKPKR SAFFVF+E+FR +KK++P K+V+AVGKAGG+KWK
Sbjct: 34 KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWK 93
Query: 79 SMSEA 83
SMS+A
Sbjct: 94 SMSQA 98
>gi|334185909|ref|NP_001190062.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|332645337|gb|AEE78858.1| high mobility group protein B1 [Arabidopsis thaliana]
Length = 161
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 49/58 (84%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
RK KA KDPNKPKR SAFFVF+E+FR +KK++P K+V+AVGKAGG+KWKSMS+A
Sbjct: 41 RKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQA 98
>gi|414590134|tpg|DAA40705.1| TPA: hypothetical protein ZEAMMB73_374315 [Zea mays]
Length = 120
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 44/54 (81%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
K KDPNKPKRP +AFFVFMEEFR+ YK+ HP K V+ +GKAGG+ WKS+S+A
Sbjct: 20 KVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMWKSLSDA 73
>gi|238013344|gb|ACR37707.1| unknown [Zea mays]
gi|414590135|tpg|DAA40706.1| TPA: HMG1/2-like protein [Zea mays]
Length = 127
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 44/54 (81%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
K KDPNKPKRP +AFFVFMEEFR+ YK+ HP K V+ +GKAGG+ WKS+S+A
Sbjct: 20 KVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMWKSLSDA 73
>gi|15231065|ref|NP_190756.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|145332807|ref|NP_001078269.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|75274976|sp|O49595.1|HMGB1_ARATH RecName: Full=High mobility group B protein 1; AltName: Full=High
mobility group protein A; Short=AtHMGalpha; Short=HMG
alpha; AltName: Full=Nucleosome/chromatin assembly
factor group D 01; Short=Nucleosome/chromatin assembly
factor group D 1
gi|2832357|emb|CAA74400.1| HMG protein [Arabidopsis thaliana]
gi|3068715|gb|AAC14415.1| unknown [Arabidopsis thaliana]
gi|15912191|gb|AAL08229.1| At3g51880/ORF13 [Arabidopsis thaliana]
gi|21360557|gb|AAM47475.1| At3g51880/ORF13 [Arabidopsis thaliana]
gi|332645334|gb|AEE78855.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|332645336|gb|AEE78857.1| high mobility group protein B1 [Arabidopsis thaliana]
Length = 178
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 49/58 (84%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
RK KA KDPNKPKR SAFFVF+E+FR +KK++P K+V+AVGKAGG+KWKSMS+A
Sbjct: 41 RKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQA 98
>gi|255566393|ref|XP_002524182.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223536551|gb|EEF38197.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 155
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 49/60 (81%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+ RK +KD + PKRPASAFF+FM+EFR+ +K+ +P NK+V+AVGKAGGEKWKS+SE
Sbjct: 34 SSRKKKNVSKDTDAPKRPASAFFIFMDEFRKYFKEKYPDNKAVSAVGKAGGEKWKSLSET 93
>gi|255571919|ref|XP_002526902.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223533801|gb|EEF35533.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 190
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R+A L NK K +K A KDPN+PKRP SAFFVF+E+FR+ YK++HP K+V+AVG
Sbjct: 29 RSAALKPNKNSKKVTKKDKPAKKDPNRPKRPPSAFFVFLEDFRKVYKQEHPNVKAVSAVG 88
Query: 71 KAGGEKWKSMSEA 83
KAGGEKWKSMS A
Sbjct: 89 KAGGEKWKSMSNA 101
>gi|255574381|ref|XP_002528104.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223532493|gb|EEF34283.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 171
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 54/73 (73%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R A +V++ ++ KA KDPNKPKRP SAFFVF+EEFR+ +KK++P SVAAVG
Sbjct: 28 RKAAAAVDRSSKLKAKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPSVTSVAAVG 87
Query: 71 KAGGEKWKSMSEA 83
KAGG KWKSMS A
Sbjct: 88 KAGGAKWKSMSSA 100
>gi|226505018|ref|NP_001151148.1| LOC100284781 [Zea mays]
gi|195644628|gb|ACG41782.1| HMG1/2-like protein [Zea mays]
Length = 127
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 43/54 (79%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
K KDPNKPKRP + FFVFMEEFR+ YK+ HP K V+ +GKAGG+ WKS+S+A
Sbjct: 20 KVEKDPNKPKRPPTTFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMWKSLSDA 73
>gi|295913307|gb|ADG57910.1| transcription factor [Lycoris longituba]
Length = 138
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/50 (74%), Positives = 43/50 (86%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPNKPKRP SAFFVFMEEFR+Q+K+ +P NK V+ VGKA G+KWKSMS A
Sbjct: 18 DPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMSAA 67
>gi|357159916|ref|XP_003578598.1| PREDICTED: HMG1/2-like protein-like [Brachypodium distachyon]
Length = 128
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 44/54 (81%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
KA KDPN+PKRP SAFFVFME FR+ YK+ HP K V+ VGKAGG +WKS+S+A
Sbjct: 20 KAEKDPNQPKRPPSAFFVFMEGFRKDYKEKHPDVKQVSVVGKAGGAEWKSLSDA 73
>gi|116790306|gb|ABK25570.1| unknown [Picea sitchensis]
gi|224286844|gb|ACN41125.1| unknown [Picea sitchensis]
gi|294461904|gb|ADE76508.1| unknown [Picea sitchensis]
Length = 151
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 45/50 (90%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPNKPKRP SAFFVF++EFR++YK+ +P SV+AVGKAGGEKW+++S+A
Sbjct: 42 DPNKPKRPPSAFFVFLDEFRKEYKQANPNANSVSAVGKAGGEKWRALSDA 91
>gi|157382900|gb|ABV48885.1| high mobility group protein B3 [Physcomitrella patens]
Length = 158
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/50 (70%), Positives = 42/50 (84%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP +AFF+F+ EFRE +K+++P K V AVGKAGGEKWKSMSEA
Sbjct: 49 DPNAPKRPPTAFFIFLNEFREVFKRENPNVKGVTAVGKAGGEKWKSMSEA 98
>gi|162460809|ref|NP_001105483.1| high mobility group protein3 [Zea mays]
gi|1845197|emb|CAA69606.1| HMGc2 [Zea mays]
gi|223947405|gb|ACN27786.1| unknown [Zea mays]
gi|413923414|gb|AFW63346.1| HMGc2 protein [Zea mays]
Length = 138
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 39/46 (84%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KPKRP SAFFVFM EFR++Y+ HP NKSVAAV KA GEKW+SMSE
Sbjct: 33 KPKRPPSAFFVFMSEFRQEYQAQHPGNKSVAAVSKAAGEKWRSMSE 78
>gi|194700664|gb|ACF84416.1| unknown [Zea mays]
gi|194701704|gb|ACF84936.1| unknown [Zea mays]
gi|413923412|gb|AFW63344.1| hypothetical protein ZEAMMB73_127996 [Zea mays]
gi|413923413|gb|AFW63345.1| hypothetical protein ZEAMMB73_127996 [Zea mays]
Length = 139
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 39/46 (84%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KPKRP SAFFVFM EFR++Y+ HP NKSVAAV KA GEKW+SMSE
Sbjct: 33 KPKRPPSAFFVFMSEFRQEYQAQHPGNKSVAAVSKAAGEKWRSMSE 78
>gi|407971018|ref|NP_001238631.1| uncharacterized protein LOC100499704 [Glycine max]
gi|255625939|gb|ACU13314.1| unknown [Glycine max]
Length = 166
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/50 (70%), Positives = 43/50 (86%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPNKPKRP SAFFVF+EEFR+ +K ++P K+V+ VGKAGGEKWKS+S A
Sbjct: 49 DPNKPKRPPSAFFVFLEEFRKTFKAENPNVKAVSVVGKAGGEKWKSLSSA 98
>gi|357506009|ref|XP_003623293.1| HMG1/2-like protein [Medicago truncatula]
gi|355498308|gb|AES79511.1| HMG1/2-like protein [Medicago truncatula]
gi|388511215|gb|AFK43669.1| unknown [Medicago truncatula]
Length = 170
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 45/50 (90%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPNKPKRP SAFFVF+E+FR+ +K ++P K+V+AVGKAGGEKWKS+++A
Sbjct: 47 DPNKPKRPPSAFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTKA 96
>gi|47027098|gb|AAT08762.1| HMG transcription factor [Hyacinthus orientalis]
Length = 158
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/88 (55%), Positives = 59/88 (67%), Gaps = 9/88 (10%)
Query: 5 KSKSDTRN---AKLSVNKKPAKAGRKSGKA------AKDPNKPKRPASAFFVFMEEFREQ 55
KSK+DT N AKLSV +K A+ K KDPNKPKRP SAFFVFME+FR+Q
Sbjct: 1 KSKADTSNKADAKLSVKRKAAEKPAKKPAPAKKSKAVKDPNKPKRPPSAFFVFMEDFRKQ 60
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+K+ +P NK V+ VGKA KWK+MS A
Sbjct: 61 FKEKNPNNKQVSVVGKACWGKWKTMSAA 88
>gi|125583208|gb|EAZ24139.1| hypothetical protein OsJ_07880 [Oryza sativa Japonica Group]
Length = 170
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 39/46 (84%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KPKRP SAFFVFM EFR++Y+ HP NKSVAAV KA GEKW++MSE
Sbjct: 57 KPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMSE 102
>gi|302797885|ref|XP_002980703.1| hypothetical protein SELMODRAFT_38818 [Selaginella
moellendorffii]
gi|300151709|gb|EFJ18354.1| hypothetical protein SELMODRAFT_38818 [Selaginella
moellendorffii]
Length = 83
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 43/53 (81%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K A DPN+PKRPA+AFFVF+EE+R+ +K HP K VAAVGKAGG+ WK ++E
Sbjct: 3 KNAADPNQPKRPATAFFVFLEEYRKTFKDKHPNIKGVAAVGKAGGDAWKRLTE 55
>gi|115447831|ref|NP_001047695.1| Os02g0670400 [Oryza sativa Japonica Group]
gi|50251344|dbj|BAD28320.1| putative high mobility group protein [Oryza sativa Japonica
Group]
gi|50252158|dbj|BAD28154.1| putative high mobility group protein [Oryza sativa Japonica
Group]
gi|113537226|dbj|BAF09609.1| Os02g0670400 [Oryza sativa Japonica Group]
Length = 145
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 39/46 (84%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KPKRP SAFFVFM EFR++Y+ HP NKSVAAV KA GEKW++MSE
Sbjct: 32 KPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMSE 77
>gi|302790391|ref|XP_002976963.1| hypothetical protein SELMODRAFT_175895 [Selaginella
moellendorffii]
gi|300155441|gb|EFJ22073.1| hypothetical protein SELMODRAFT_175895 [Selaginella
moellendorffii]
Length = 156
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 42/51 (82%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
A DPN+PKRPA+AFFVF+EE+R+ +K HP K VAAVGKAGG+ WK ++E
Sbjct: 49 AADPNQPKRPATAFFVFLEEYRKTFKDKHPNIKGVAAVGKAGGDAWKRLTE 99
>gi|18700443|dbj|BAB85204.1| high mobility group box protein 2 [Oryza sativa Japonica Group]
gi|125540625|gb|EAY87020.1| hypothetical protein OsI_08417 [Oryza sativa Indica Group]
Length = 145
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 39/46 (84%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KPKRP SAFFVFM EFR++Y+ HP NKSVAAV KA GEKW++MSE
Sbjct: 32 KPKRPPSAFFVFMSEFRQEYQAAHPGNKSVAAVSKAAGEKWRAMSE 77
>gi|359484115|ref|XP_002267697.2| PREDICTED: high mobility group B protein 7-like [Vitis vinifera]
gi|147815109|emb|CAN61363.1| hypothetical protein VITISV_034306 [Vitis vinifera]
gi|297742725|emb|CBI35359.3| unnamed protein product [Vitis vinifera]
Length = 190
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 49/63 (77%), Gaps = 2/63 (3%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
KP K+ R + KDPN PKRP +AFF+FM++FR++YK+ +P +K+V+ V K GGEKWKS
Sbjct: 83 KPKKSRR--LRKVKDPNMPKRPPTAFFLFMDDFRKEYKESNPDSKNVSVVAKEGGEKWKS 140
Query: 80 MSE 82
M++
Sbjct: 141 MTD 143
>gi|351725417|ref|NP_001235556.1| uncharacterized protein LOC100305961 [Glycine max]
gi|255627113|gb|ACU13901.1| unknown [Glycine max]
Length = 169
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 42/50 (84%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPNKPKRP SAF VF+EEFR+ +K ++P K+V+ VGKAGGEKWKS+S A
Sbjct: 49 DPNKPKRPPSAFLVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSA 98
>gi|15237040|ref|NP_195282.1| high mobility group B5 protein [Arabidopsis thaliana]
gi|75219649|sp|O49597.1|HMGB5_ARATH RecName: Full=High mobility group B protein 5; AltName: Full=High
mobility group protein D; Short=AtHMGdelta; Short=HMG
delta; AltName: Full=Nucleosome/chromatin assembly
factor group D 05; Short=Nucleosome/chromatin assembly
factor group D 5
gi|2832363|emb|CAA74404.1| HMG protein [Arabidopsis thaliana]
gi|3367575|emb|CAA20027.1| HMG delta protein [Arabidopsis thaliana]
gi|7270508|emb|CAB80273.1| HMG delta protein [Arabidopsis thaliana]
gi|21553743|gb|AAM62836.1| HMG delta protein [Arabidopsis thaliana]
gi|98961063|gb|ABF59015.1| At4g35570 [Arabidopsis thaliana]
gi|222423786|dbj|BAH19859.1| AT4G35570 [Arabidopsis thaliana]
gi|332661132|gb|AEE86532.1| high mobility group B5 protein [Arabidopsis thaliana]
Length = 125
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 45/58 (77%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
G K GK KDPN+PK+P S FFVF+++FR+++ +P NKSV VG+A G+KWK+M+E
Sbjct: 21 GNKVGKKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTE 78
>gi|388497798|gb|AFK36965.1| unknown [Medicago truncatula]
Length = 170
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 44/50 (88%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPNKPKRP SAFFVF+E+FR+ +K ++P K+V+AVGKAGG KWKS+++A
Sbjct: 47 DPNKPKRPPSAFFVFLEDFRKTFKAENPNVKAVSAVGKAGGGKWKSLTKA 96
>gi|449464956|ref|XP_004150195.1| PREDICTED: high mobility group B protein 7-like [Cucumis sativus]
gi|449531370|ref|XP_004172659.1| PREDICTED: high mobility group B protein 7-like [Cucumis sativus]
Length = 207
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 43/56 (76%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K GK KDPN PKRP +AFF+FM++FR+ YK+ +P +K V V K GGEKWKSM++
Sbjct: 100 KKGKKDKDPNAPKRPPTAFFIFMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSMTD 155
>gi|195619220|gb|ACG31440.1| HMG1/2-like protein [Zea mays]
Length = 139
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 38/46 (82%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KPKRP SAFFVFM EFR+QY+ HP NKSVA V KA GEKW++MS+
Sbjct: 32 KPKRPPSAFFVFMSEFRQQYQALHPGNKSVATVSKAAGEKWRAMSD 77
>gi|357508231|ref|XP_003624404.1| High mobility group protein [Medicago truncatula]
gi|355499419|gb|AES80622.1| High mobility group protein [Medicago truncatula]
Length = 144
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 43/53 (81%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KA DP+KPKRP S FF+FM +FR +++K++P NK V+ VGKA GEKW+SMS+
Sbjct: 5 KAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSD 57
>gi|293333310|ref|NP_001168929.1| uncharacterized protein LOC100382741 [Zea mays]
gi|223973791|gb|ACN31083.1| unknown [Zea mays]
Length = 204
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 38/46 (82%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KPKRP SAFFVFM EFR++Y+ HP NKSVA V KA GEKW++MS+
Sbjct: 32 KPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSD 77
>gi|449468356|ref|XP_004151887.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|449517965|ref|XP_004166014.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
Length = 142
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Query: 23 KAGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KA KS K+ K D N PKRPA+ FFVFMEEFR+ YK+ P K+ VGK GGEKWKSMS
Sbjct: 23 KAEMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMS 82
Query: 82 EA 83
+A
Sbjct: 83 DA 84
>gi|116785888|gb|ABK23898.1| unknown [Picea sitchensis]
Length = 220
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 44/57 (77%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
R K A+DPN+PK+PA+AFFVFM++FR+ YK+ +P K A VGK GG KWK+MS+
Sbjct: 96 RTREKKARDPNQPKKPATAFFVFMDDFRKTYKETNPDVKGAAQVGKEGGLKWKAMSD 152
>gi|1845195|emb|CAA69605.1| HMGc1 [Zea mays]
gi|5441504|emb|CAB46753.1| HMGc1 protein [Zea mays]
gi|194690322|gb|ACF79245.1| unknown [Zea mays]
gi|194704052|gb|ACF86110.1| unknown [Zea mays]
gi|219885481|gb|ACL53115.1| unknown [Zea mays]
gi|413938184|gb|AFW72735.1| HMG-like nucleosome/chromatin assembly factor D isoform 1 [Zea
mays]
gi|413938185|gb|AFW72736.1| HMG-like nucleosome/chromatin assembly factor D isoform 2 [Zea
mays]
Length = 139
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 38/46 (82%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KPKRP SAFFVFM EFR++Y+ HP NKSVA V KA GEKW++MS+
Sbjct: 32 KPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSD 77
>gi|357136925|ref|XP_003570053.1| PREDICTED: HMG1/2-like protein-like [Brachypodium distachyon]
Length = 144
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 37/44 (84%)
Query: 40 RPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
RP SAFFVFM EFR++Y+ +HP NKSVA V KA GEKW+SMS+A
Sbjct: 36 RPPSAFFVFMSEFRQEYQAEHPNNKSVANVSKAAGEKWRSMSDA 79
>gi|346472777|gb|AEO36233.1| hypothetical protein [Amblyomma maculatum]
Length = 208
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 40/46 (86%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
NKPKR +AFF+FM++FR++YK+ HP NKSVA+V K GGE+W+SM+
Sbjct: 102 NKPKRAPTAFFLFMDDFRKEYKELHPDNKSVASVAKEGGERWRSMT 147
>gi|125559825|gb|EAZ05273.1| hypothetical protein OsI_27476 [Oryza sativa Indica Group]
gi|125559834|gb|EAZ05282.1| hypothetical protein OsI_27485 [Oryza sativa Indica Group]
Length = 204
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 39/46 (84%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K KRP +AFF+FM +FR++YK +HP NKSV+AV K GGE+WKSMS+
Sbjct: 91 KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSD 136
>gi|115474323|ref|NP_001060758.1| Os08g0101100 [Oryza sativa Japonica Group]
gi|38637289|dbj|BAD03552.1| putative HMG type nucleosome/chromatin assembly factor D [Oryza
sativa Japonica Group]
gi|113622727|dbj|BAF22672.1| Os08g0101100 [Oryza sativa Japonica Group]
gi|125601889|gb|EAZ41214.1| hypothetical protein OsJ_25719 [Oryza sativa Japonica Group]
gi|213959174|gb|ACJ54921.1| HMG type nucleosome/chromatin assembly factor [Oryza sativa
Japonica Group]
gi|215697671|dbj|BAG91665.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 203
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 39/46 (84%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K KRP +AFF+FM +FR++YK +HP NKSV+AV K GGE+WKSMS+
Sbjct: 91 KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSD 136
>gi|162461550|ref|NP_001105075.1| high mobility group box protein2 [Zea mays]
gi|17017394|gb|AAL33651.1|AF440222_1 HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 139
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/46 (67%), Positives = 37/46 (80%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KPKRP SAFF FM EFR++Y+ HP NKSVA V KA GEKW++MS+
Sbjct: 32 KPKRPPSAFFAFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSD 77
>gi|168050181|ref|XP_001777538.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671023|gb|EDQ57581.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 314
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 39/52 (75%)
Query: 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
AAKD + PKRP SA+F+FME FR+++K +P K V A KAGGEKW SMSE
Sbjct: 186 AAKDSDMPKRPPSAYFIFMETFRKEFKAANPDVKGVTASAKAGGEKWLSMSE 237
>gi|157382896|gb|ABV48883.1| high mobility group protein B1 [Physcomitrella patens]
Length = 215
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 39/52 (75%)
Query: 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
AAKD + PKRP SA+F+FME FR+++K +P K V A KAGGEKW SMSE
Sbjct: 130 AAKDSDMPKRPPSAYFIFMETFRKEFKAANPDVKGVTASAKAGGEKWLSMSE 181
>gi|388499756|gb|AFK37944.1| unknown [Lotus japonicus]
Length = 197
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 47/60 (78%)
Query: 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+A + K +DPN+PKRP +AFFVF+++FR+++K+ +P +K V VGK GGEKW++M++
Sbjct: 87 RAKTEKAKKVEDPNQPKRPPTAFFVFLDDFRKEFKEANPGSKDVKRVGKEGGEKWRAMTD 146
>gi|339716048|gb|AEJ88271.1| putative HMG DNA-binding protein [Wolffia arrhiza]
Length = 148
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/86 (62%), Positives = 66/86 (76%), Gaps = 3/86 (3%)
Query: 1 MKGG-KSKSDTR--NAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYK 57
MKGG KSKS+ +++LSV KK K+ K AKDPNKPKR SAFFVF+EEFR++YK
Sbjct: 1 MKGGAKSKSEPTKADSRLSVKKKAPARAAKTAKKAKDPNKPKRAPSAFFVFLEEFRKEYK 60
Query: 58 KDHPKNKSVAAVGKAGGEKWKSMSEA 83
+ HP NKSVAAVGKA G KW+SMS++
Sbjct: 61 EKHPDNKSVAAVGKAAGAKWRSMSDS 86
>gi|106879575|emb|CAJ38371.1| HMG-protein [Plantago major]
Length = 212
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 40/44 (90%)
Query: 40 RPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
RP SAFFVF+EEFR+ +KK++P K+V+AVGKAGGEKWKS+++A
Sbjct: 101 RPPSAFFVFLEEFRQTFKKENPNIKAVSAVGKAGGEKWKSLTDA 144
>gi|359481661|ref|XP_002279947.2| PREDICTED: high mobility group B protein 1-like [Vitis vinifera]
gi|147815135|emb|CAN74566.1| hypothetical protein VITISV_023651 [Vitis vinifera]
gi|297740214|emb|CBI30396.3| unnamed protein product [Vitis vinifera]
Length = 168
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 40/44 (90%)
Query: 40 RPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
RP SAFFVF+EEFR+ +KK++P K+V+AVGKAGGE+WKS+SEA
Sbjct: 58 RPPSAFFVFLEEFRKVFKKENPNVKAVSAVGKAGGERWKSLSEA 101
>gi|326525246|dbj|BAK07893.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 215
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 37/46 (80%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K KRP +AFF+FM++FR ++K HP K VAAVGKA GEKW+SM+E
Sbjct: 100 KAKRPPTAFFLFMKDFRVEFKTSHPDEKGVAAVGKAAGEKWRSMTE 145
>gi|371721822|gb|AEX55234.1| HMG transcription factor [Allium sativum]
Length = 115
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 39/46 (84%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
PKRP SAFFVFME+FR+ +K+ +P NK V+AVGKA G+KWKS++ A
Sbjct: 2 PKRPPSAFFVFMEDFRKIFKEKNPDNKQVSAVGKAAGDKWKSLTAA 47
>gi|224097317|ref|XP_002310906.1| high mobility group family [Populus trichocarpa]
gi|118483462|gb|ABK93630.1| unknown [Populus trichocarpa]
gi|222853809|gb|EEE91356.1| high mobility group family [Populus trichocarpa]
Length = 201
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 40/50 (80%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+DPN PKRP +AFF+FM++FR++YK+ +P +K V V K GG +WKSM++
Sbjct: 100 RDPNAPKRPPTAFFLFMDDFRKEYKEANPDSKDVKKVAKEGGVRWKSMTD 149
>gi|414869181|tpg|DAA47738.1| TPA: hypothetical protein ZEAMMB73_864709 [Zea mays]
Length = 198
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 34/46 (73%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KPKRP SAFFVFM EFR++Y+ HP NKS+ V K GEKW + S+
Sbjct: 153 KPKRPPSAFFVFMSEFRQEYQVQHPGNKSIVVVSKTAGEKWHAKSD 198
>gi|351722065|ref|NP_001236719.1| uncharacterized protein LOC100306558 [Glycine max]
gi|255628875|gb|ACU14782.1| unknown [Glycine max]
Length = 209
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 39/49 (79%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKRP +AFFVF+++FR+ +K+ +P +K V VGK GEKW+SM++
Sbjct: 99 DPNMPKRPPTAFFVFLDDFRKSFKEANPDSKDVKRVGKEAGEKWRSMTD 147
>gi|388495062|gb|AFK35597.1| unknown [Lotus japonicus]
Length = 162
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 51/71 (71%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R+A+ + + K KA +K+ K D NKPK+P +AFF F+E+FR++++ +P K++ +G
Sbjct: 43 RSAQQTKSTKKPKAKQKTSKQRIDANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIG 102
Query: 71 KAGGEKWKSMS 81
K+ GEKWK+M+
Sbjct: 103 KSCGEKWKTMT 113
>gi|195618458|gb|ACG31059.1| HMG1/2-like protein [Zea mays]
gi|195640852|gb|ACG39894.1| HMG1/2-like protein [Zea mays]
gi|223975443|gb|ACN31909.1| unknown [Zea mays]
gi|413925109|gb|AFW65041.1| HMG type nucleosome/chromatin assembly factor DNucleasome/chromatin
assembly factor D protein NFD106 [Zea mays]
Length = 212
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 37/46 (80%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K KR +AFF+FM++FR+++K HP NKSVA V K GGE+WKSM++
Sbjct: 91 KRKRSPTAFFLFMDDFRKEFKATHPDNKSVATVAKEGGERWKSMTD 136
>gi|297597325|ref|NP_001043799.2| Os01g0666200 [Oryza sativa Japonica Group]
gi|56202161|dbj|BAD73639.1| HMG protein-like [Oryza sativa Japonica Group]
gi|125527174|gb|EAY75288.1| hypothetical protein OsI_03176 [Oryza sativa Indica Group]
gi|215693961|dbj|BAG89148.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255673529|dbj|BAF05713.2| Os01g0666200 [Oryza sativa Japonica Group]
Length = 133
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 41/57 (71%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
RK G+ D +PK+P +AFF FME+FR+ YK+++P KS+ VGKA GEKW +M+
Sbjct: 36 SRKKGQPLVDRRRPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTMT 92
>gi|125527178|gb|EAY75292.1| hypothetical protein OsI_03182 [Oryza sativa Indica Group]
Length = 133
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 41/57 (71%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
RK G+ D +PK+P +AFF FME+FR+ YK+++P KS+ VGKA GEKW +M+
Sbjct: 36 SRKKGQPLVDRRRPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTMT 92
>gi|223942599|gb|ACN25383.1| unknown [Zea mays]
gi|414881085|tpg|DAA58216.1| TPA: hypothetical protein ZEAMMB73_949955 [Zea mays]
Length = 118
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 39/56 (69%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89
DP PK+P +AFF FME+FR+ YK++ P KS+ +GKA GEKW +M+ VS L
Sbjct: 37 DPRAPKKPPTAFFYFMEDFRKIYKQEKPSVKSMQEIGKACGEKWNTMTFEVSIFSL 92
>gi|242080163|ref|XP_002444850.1| hypothetical protein SORBIDRAFT_07g000230 [Sorghum bicolor]
gi|241941200|gb|EES14345.1| hypothetical protein SORBIDRAFT_07g000230 [Sorghum bicolor]
Length = 221
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 48/73 (65%), Gaps = 6/73 (8%)
Query: 15 LSVNKKPAKAGRKSGKAA-----KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAV 69
+ V KPA+ + S K KD K KR +AFF+FM++FR+++K HP NKSVA V
Sbjct: 70 VEVAAKPAERNKSSAKGHGGGGNKDA-KRKRSPTAFFLFMDDFRKEFKAAHPDNKSVATV 128
Query: 70 GKAGGEKWKSMSE 82
K GGEKWKSM++
Sbjct: 129 AKEGGEKWKSMTD 141
>gi|162462896|ref|NP_001105076.1| nucleosome/chromatin assembly factor D [Zea mays]
gi|17017396|gb|AAL33652.1|AF440223_1 HMG type nucleosome/chromatin assembly factor D [Zea mays]
gi|22135475|gb|AAM93218.1|AF527617_1 nucleasome/chromatin assembly factor D protein NFD106 [Zea mays]
Length = 154
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 37/46 (80%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K KR +AFF+FM++FR+++K HP NKSVA V K GGE+WKSM++
Sbjct: 33 KRKRSPTAFFLFMDDFRKEFKATHPDNKSVATVAKEGGERWKSMTD 78
>gi|356536465|ref|XP_003536758.1| PREDICTED: high mobility group B protein 7-like [Glycine max]
Length = 200
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 38/49 (77%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKRP +AFF F+++FR+ +K+ +P +K V VGK GEKW+SM++
Sbjct: 99 DPNMPKRPPTAFFAFLDDFRKSFKEANPDSKDVKRVGKEAGEKWRSMTD 147
>gi|388501678|gb|AFK38905.1| unknown [Medicago truncatula]
Length = 152
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 48/71 (67%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R+ + + ++ KA +K K D KPK+P +AFF F+E+FR+++K +P KS+ +G
Sbjct: 37 RSLRQTKSRDITKAVQKKNKQKIDAKKPKKPPTAFFYFLEDFRKEFKDQNPDVKSMRDIG 96
Query: 71 KAGGEKWKSMS 81
KA GEKWK+M+
Sbjct: 97 KACGEKWKTMT 107
>gi|388522261|gb|AFK49192.1| unknown [Lotus japonicus]
Length = 173
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 38/44 (86%)
Query: 40 RPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
RP SAFFVF+E+FR+ +K ++P K V+AVGKAGGEKWKS+++A
Sbjct: 52 RPPSAFFVFLEDFRKTFKAENPNVKGVSAVGKAGGEKWKSLTKA 95
>gi|357135842|ref|XP_003569517.1| PREDICTED: high mobility group B protein 14-like [Brachypodium
distachyon]
Length = 127
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 16 SVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGE 75
S KP RK G DP +PK+P +AFF FME+FR+++K ++P KS+ +G+A GE
Sbjct: 22 SPRTKPRPEPRKKGTVG-DPRRPKKPPTAFFYFMEDFRDKFKAENPSVKSMQDIGRACGE 80
Query: 76 KWKSMS 81
KW M+
Sbjct: 81 KWNKMA 86
>gi|225463454|ref|XP_002275908.1| PREDICTED: high mobility group B protein 14 [Vitis vinifera]
gi|297740668|emb|CBI30850.3| unnamed protein product [Vitis vinifera]
Length = 175
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 46/64 (71%), Gaps = 2/64 (3%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
NK AK ++S + D KPK+P +AFF F+E+FR+++++ +P KS+ +GKA GEKW
Sbjct: 70 NKAKAKTKKRSQRV--DSKKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKW 127
Query: 78 KSMS 81
K+M+
Sbjct: 128 KTMT 131
>gi|226503761|ref|NP_001151622.1| HMG1/2-like protein [Zea mays]
gi|195648164|gb|ACG43550.1| HMG1/2-like protein [Zea mays]
gi|414881086|tpg|DAA58217.1| TPA: HMG1/2-like protein [Zea mays]
Length = 115
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 36/48 (75%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DP PK+P +AFF FME+FR+ YK++ P KS+ +GKA GEKW +M+
Sbjct: 37 DPRAPKKPPTAFFYFMEDFRKIYKQEKPSVKSMQEIGKACGEKWNTMT 84
>gi|357144307|ref|XP_003573245.1| PREDICTED: high mobility group B protein 7-like [Brachypodium
distachyon]
Length = 218
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 36/47 (76%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
N KRP +AFF+FM++FR ++K HP K V+AVGKA G KWK+M++
Sbjct: 99 NGKKRPPTAFFIFMKDFRLEFKASHPDEKGVSAVGKAAGVKWKAMTD 145
>gi|66840992|emb|CAI64395.1| putative high mobility group protein [Triticum aestivum]
Length = 112
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 34/46 (73%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KPKR + FF F+ EFR QY + HP+ K VAAV KA GEKW+SMS+
Sbjct: 22 KPKRAPTPFFAFLAEFRPQYMEKHPEAKGVAAVTKAAGEKWRSMSD 67
>gi|18403553|ref|NP_565788.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
gi|75219838|sp|O64702.2|HMG14_ARATH RecName: Full=High mobility group B protein 14; AltName:
Full=Nucleosome/chromatin assembly factor group D 14
gi|20197083|gb|AAC26692.2| putative HMG protein [Arabidopsis thaliana]
gi|20197160|gb|AAM14948.1| putative HMG protein [Arabidopsis thaliana]
gi|21536857|gb|AAM61189.1| putative HMG protein [Arabidopsis thaliana]
gi|26452914|dbj|BAC43535.1| putative HMG protein [Arabidopsis thaliana]
gi|28973511|gb|AAO64080.1| putative HMG protein [Arabidopsis thaliana]
gi|330253881|gb|AEC08975.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
Length = 151
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 37/44 (84%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
PK+PA+AFF F+++FR+QY++++P KS+ +GK GEKWK+M+
Sbjct: 63 PKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTMT 106
>gi|449433698|ref|XP_004134634.1| PREDICTED: high mobility group B protein 14-like [Cucumis sativus]
gi|449505924|ref|XP_004162605.1| PREDICTED: high mobility group B protein 14-like [Cucumis sativus]
Length = 161
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 39/48 (81%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
D NKPK+P +AFF F+++FR+++++ +P K++ VGKA GEKWK+M+
Sbjct: 69 DVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKTMRDVGKACGEKWKTMT 116
>gi|357165293|ref|XP_003580334.1| PREDICTED: HMG1/2-like protein-like [Brachypodium distachyon]
Length = 135
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 34/46 (73%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KPKR + FF F+ EFR QY + HP+ K VAAV KA GEKW+SMS+
Sbjct: 26 KPKRAPTPFFAFLAEFRPQYMEKHPEAKGVAAVTKAAGEKWRSMSD 71
>gi|413923117|gb|AFW63049.1| putative phototropic-resoponsive NPH3 family protein [Zea mays]
Length = 425
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/34 (73%), Positives = 29/34 (85%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAV 69
+KPKRP SAFFVFM EFR++Y+ HP NKSVAAV
Sbjct: 287 SKPKRPTSAFFVFMSEFRQEYQVQHPGNKSVAAV 320
>gi|115459940|ref|NP_001053570.1| Os04g0564600 [Oryza sativa Japonica Group]
gi|38345400|emb|CAE03091.2| OSJNBa0017B10.6 [Oryza sativa Japonica Group]
gi|113565141|dbj|BAF15484.1| Os04g0564600 [Oryza sativa Japonica Group]
gi|116309704|emb|CAH66751.1| H0409D10.9 [Oryza sativa Indica Group]
gi|116309707|emb|CAH66753.1| OSIGBa0158F05.2 [Oryza sativa Indica Group]
gi|125549359|gb|EAY95181.1| hypothetical protein OsI_16998 [Oryza sativa Indica Group]
gi|149391231|gb|ABR25633.1| hmg1/2-like protein [Oryza sativa Indica Group]
gi|213959192|gb|ACJ54930.1| HMG protein [Oryza sativa Japonica Group]
gi|215767864|dbj|BAH00093.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222629376|gb|EEE61508.1| hypothetical protein OsJ_15798 [Oryza sativa Japonica Group]
gi|323388963|gb|ADX60286.1| HMG transcription factor [Oryza sativa Japonica Group]
Length = 132
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KPKR + FF F+ EFR QY + HP K VAAV KA GEKW++MS+
Sbjct: 24 KPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSD 69
>gi|356524949|ref|XP_003531090.1| PREDICTED: high mobility group B protein 14-like [Glycine max]
Length = 148
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 38/48 (79%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
D KPK+P +AFF F+E+FR+++++ +P KS+ +GKA GEKWK+M+
Sbjct: 56 DAMKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMT 103
>gi|359486418|ref|XP_003633441.1| PREDICTED: high mobility group B protein 1 [Vitis vinifera]
Length = 151
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 41/58 (70%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAA 68
R A L +K K +K A KDPNKPKRP SAFFVF+EEFR+ YK++HP K+V+A
Sbjct: 29 RKAALKADKSTKKLAKKEKLAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSA 86
>gi|255557355|ref|XP_002519708.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223541125|gb|EEF42681.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 198
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 17 VNKKPAKAGRKSGK--AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGG 74
V K AK R S + A D KPK+P +AFF F+E+FR+ ++K +P KS+ +GKA G
Sbjct: 87 VKDKRAKPKRISKRQIAKLDSKKPKKPPTAFFYFLEDFRKDFQKQNPDVKSMREIGKACG 146
Query: 75 EKWKSMS 81
EKWK M+
Sbjct: 147 EKWKMMT 153
>gi|297812491|ref|XP_002874129.1| hypothetical protein ARALYDRAFT_910356 [Arabidopsis lyrata subsp.
lyrata]
gi|297319966|gb|EFH50388.1| hypothetical protein ARALYDRAFT_910356 [Arabidopsis lyrata subsp.
lyrata]
Length = 193
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 39/54 (72%), Gaps = 3/54 (5%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVA-AVGKAGGEKWKSMSE 82
K++ NKPKRP +AFF+FM +FR+ +K +H N S+A K GGEKWKS++E
Sbjct: 107 KSSSTSNKPKRPLTAFFIFMNDFRKTFKTEH--NGSLAKDAAKIGGEKWKSLTE 158
>gi|213959194|gb|ACJ54931.1| HMG protein [Oryza sativa Japonica Group]
Length = 131
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KPKR + FF F+ EFR QY + HP K VAAV KA GEKW++MS+
Sbjct: 24 KPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSD 69
>gi|427794389|gb|JAA62646.1| Putative dorsal switch protein 1, partial [Rhipicephalus
pulchellus]
Length = 604
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K A+D NKPKRP +AF +FM +FR++ P+ VAA+ K GGE+W+SMSE
Sbjct: 250 KPARDANKPKRPGTAFMLFMGDFRKEMAGKEPEG-GVAALAKLGGERWRSMSE 301
>gi|18420676|ref|NP_568431.1| high-mobility group B6 protein [Arabidopsis thaliana]
gi|75245985|sp|Q8LDF9.1|HMGB7_ARATH RecName: Full=High mobility group B protein 7; AltName:
Full=Nucleosome/chromatin assembly factor group D 07;
Short=Nucleosome/chromatin assembly factor group D 7
gi|21554154|gb|AAM63233.1| unknown [Arabidopsis thaliana]
gi|26452394|dbj|BAC43282.1| unknown protein [Arabidopsis thaliana]
gi|332005781|gb|AED93164.1| high-mobility group B6 protein [Arabidopsis thaliana]
Length = 241
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 39/54 (72%), Gaps = 3/54 (5%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVA-AVGKAGGEKWKSMSE 82
K++ NKPKRP +AFF+FM +FR+ +K +H N S+A K GGEKWKS++E
Sbjct: 107 KSSSTSNKPKRPLTAFFIFMSDFRKTFKSEH--NGSLAKDAAKIGGEKWKSLTE 158
>gi|427793709|gb|JAA62306.1| Putative dorsal switch protein 1, partial [Rhipicephalus
pulchellus]
Length = 640
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K A+D NKPKRP +AF +FM +FR++ P+ VAA+ K GGE+W+SMSE
Sbjct: 286 KPARDANKPKRPGTAFMLFMGDFRKEMAGKEPEG-GVAALAKLGGERWRSMSE 337
>gi|427793707|gb|JAA62305.1| Putative dorsal switch protein 1, partial [Rhipicephalus
pulchellus]
Length = 529
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K A+D NKPKRP +AF +FM +FR++ P+ VAA+ K GGE+W+SMSE
Sbjct: 271 KPARDANKPKRPGTAFMLFMGDFRKEMAGKEPEG-GVAALAKLGGERWRSMSE 322
>gi|427780835|gb|JAA55869.1| Putative dorsal switch protein 1 [Rhipicephalus pulchellus]
Length = 508
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K A+D NKPKRP +AF +FM +FR++ P+ VAA+ K GGE+W+SMSE
Sbjct: 250 KPARDANKPKRPGTAFMLFMGDFRKEMAGKEPEG-GVAALAKLGGERWRSMSE 301
>gi|9759080|dbj|BAB09558.1| unnamed protein product [Arabidopsis thaliana]
Length = 226
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 39/54 (72%), Gaps = 3/54 (5%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVA-AVGKAGGEKWKSMSE 82
K++ NKPKRP +AFF+FM +FR+ +K +H N S+A K GGEKWKS++E
Sbjct: 92 KSSSTSNKPKRPLTAFFIFMSDFRKTFKSEH--NGSLAKDAAKIGGEKWKSLTE 143
>gi|351724833|ref|NP_001237839.1| uncharacterized protein LOC100305607 [Glycine max]
gi|255626057|gb|ACU13373.1| unknown [Glycine max]
Length = 150
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 38/48 (79%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
D KP++P +AFF F+E+FR+++++ +P +S+ +GKA GEKWK+M+
Sbjct: 58 DAMKPRKPPTAFFYFLEDFRKEFQEQNPDVRSMRDIGKACGEKWKTMT 105
>gi|79324303|ref|NP_001031480.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
gi|330253882|gb|AEC08976.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
Length = 152
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 37/45 (82%), Gaps = 1/45 (2%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSV-AAVGKAGGEKWKSMS 81
PK+PA+AFF F+++FR+QY++++P KS+ +GK GEKWK+M+
Sbjct: 63 PKKPATAFFFFLDDFRKQYQEENPDVKSMREVIGKTCGEKWKTMT 107
>gi|52219178|ref|NP_001004674.1| high-mobility group box 2b [Danio rerio]
gi|51858850|gb|AAH81415.1| High-mobility group box 2 [Danio rerio]
gi|182889482|gb|AAI65150.1| Hmgb2 protein [Danio rerio]
Length = 214
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K K+G+ KDPN PKRP SAFFVF E+R K +HP N ++ + K GE W
Sbjct: 80 PPKGVGKTGRKKKDPNAPKRPPSAFFVFCSEYRPTVKSEHP-NLTIGEIAKKLGELWSKQ 138
Query: 81 S 81
S
Sbjct: 139 S 139
>gi|213982973|ref|NP_001135648.1| uncharacterized protein LOC100216207 [Xenopus (Silurana)
tropicalis]
gi|156914901|gb|AAI52619.1| Hmgb2 protein [Danio rerio]
gi|197245630|gb|AAI68534.1| Unknown (protein for MGC:181066) [Xenopus (Silurana) tropicalis]
Length = 214
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K K+G+ KDPN PKRP SAFFVF E+R K +HP N ++ + K GE W
Sbjct: 80 PPKGVGKTGRKKKDPNAPKRPPSAFFVFCSEYRPTVKSEHP-NLTIGEIAKKLGELWSKQ 138
Query: 81 S 81
S
Sbjct: 139 S 139
>gi|413943061|gb|AFW75710.1| hypothetical protein ZEAMMB73_996127 [Zea mays]
Length = 95
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 46/67 (68%), Gaps = 3/67 (4%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
+KP K GRK+ KA KDPNKPKR +AFFV M EFR+++K+ +PK KSVAAV + WK
Sbjct: 29 EKPTK-GRKA-KAGKDPNKPKRAPNAFFVLMGEFRKEFKEKNPKIKSVAAV-ELNFPGWK 85
Query: 79 SMSEAVS 85
S V
Sbjct: 86 SCRRQVE 92
>gi|388511193|gb|AFK43658.1| unknown [Lotus japonicus]
Length = 92
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 30/35 (85%)
Query: 49 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
M EFR Q+KKD+P NKSVAAVGKA G KWKSM++A
Sbjct: 1 MSEFRTQFKKDNPNNKSVAAVGKAAGSKWKSMTDA 35
>gi|242053921|ref|XP_002456106.1| hypothetical protein SORBIDRAFT_03g030540 [Sorghum bicolor]
gi|241928081|gb|EES01226.1| hypothetical protein SORBIDRAFT_03g030540 [Sorghum bicolor]
Length = 109
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 35/48 (72%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
D PK+P +AFF FME+FR+ YK++ P KS+ +GKA GEKW +M+
Sbjct: 21 DRRAPKKPPTAFFYFMEDFRKVYKQEKPSVKSMQEIGKACGEKWNTMA 68
>gi|297826905|ref|XP_002881335.1| high mobility group family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297327174|gb|EFH57594.1| high mobility group family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 152
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 37/45 (82%), Gaps = 1/45 (2%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSV-AAVGKAGGEKWKSMS 81
PK+P +AFF F+E+FR+QY++++P+ KS+ +GK GEKWK+M+
Sbjct: 64 PKKPPTAFFFFLEDFRKQYQEENPEVKSMREVIGKTCGEKWKTMT 108
>gi|297812105|ref|XP_002873936.1| hypothetical protein ARALYDRAFT_488801 [Arabidopsis lyrata subsp.
lyrata]
gi|297319773|gb|EFH50195.1| hypothetical protein ARALYDRAFT_488801 [Arabidopsis lyrata subsp.
lyrata]
Length = 224
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVA-AVGKAGGEKWKSMSE 82
K++ NKPKRP +AFF+FM +FR+ +K +H N S A K GGEKW S++E
Sbjct: 104 KSSSTSNKPKRPLTAFFIFMNDFRKTFKTEH--NGSFAKDAAKIGGEKWMSLTE 155
>gi|297798364|ref|XP_002867066.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297312902|gb|EFH43325.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 125
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 57/82 (69%), Gaps = 4/82 (4%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MK +++ ++R S + + G K GK KDPNKPK+P S FFVF+++FR ++ +
Sbjct: 1 MKDNQTEVESR----STDDRLKVRGNKGGKKTKDPNKPKKPPSPFFVFLDDFRREFNLAN 56
Query: 61 PKNKSVAAVGKAGGEKWKSMSE 82
P NKSVA+VGKA G+KWKSM+E
Sbjct: 57 PDNKSVASVGKAAGKKWKSMTE 78
>gi|256080078|ref|XP_002576310.1| structure specific recognition protein [Schistosoma mansoni]
gi|350646026|emb|CCD59303.1| structure specific recognition protein,putative [Schistosoma
mansoni]
Length = 632
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
K+P+K K K KDPN P RP SA+F++ E RE+ K+ SVA V KA GE W
Sbjct: 526 TKQPSKRQTKKQKKPKDPNAPTRPLSAYFLWFNENREKIAKNLGGQNSVAEVAKAAGEIW 585
Query: 78 KSM 80
++M
Sbjct: 586 RNM 588
>gi|432117313|gb|ELK37700.1| Putative high mobility group protein B3-like protein [Myotis
davidii]
Length = 147
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+K K+PN PKRP S FF+F EFR + K +P S+ V K GE W ++
Sbjct: 80 PAKGGKK-----KEPNVPKRPTSGFFLFCSEFRPKIKSTNP-GSSIGDVAKKLGEMWNNL 133
Query: 81 SEAVSGLVLV 90
S++ S L +
Sbjct: 134 SDSESSLTTI 143
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
A DP KP+ SA+ F++ RE++KK +P+ S A K E+WK+MS
Sbjct: 2 AKSDPKKPQGKMSAYAFFVQTCREEHKKKNPEVPVSFAEFSKKCSERWKTMS 53
>gi|384246550|gb|EIE20040.1| hypothetical protein COCSUDRAFT_83556 [Coccomyxa subellipsoidea
C-169]
Length = 140
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
K +A K + P+RP SA+ FM EFRE++K DHP+ V+ VG A GE W+S++
Sbjct: 9 KKRRAKKPKDAPRRPKSAYMFFMAEFREKWKVDHPEVNRVSDVGVAAGEAWRSLT 63
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Query: 16 SVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHP 61
S + KP K ++S ++P + +RP SA+F F+ FR+ +K+D+P
Sbjct: 90 SAHPKPPKKRQRS----REPGQLRRPTSAYFFFLNTFRDAFKEDNP 131
>gi|356528116|ref|XP_003532651.1| PREDICTED: high mobility group protein B2-like [Glycine max]
Length = 234
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 38/52 (73%), Gaps = 4/52 (7%)
Query: 34 DPNKPKRPASAFF----VFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
D KPK+ SAFF +FME+FR+++++ +P KS+ +GKA GEKWK+M+
Sbjct: 41 DAMKPKKSPSAFFPLFSLFMEDFRKEFQEQNPDIKSMYDIGKACGEKWKTMT 92
>gi|449272347|gb|EMC82325.1| FACT complex subunit SSRP1 [Columba livia]
Length = 704
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 13 AKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKA 72
AKL ++KP K +S K KDPN PKRP SA+ +++ RE+ K DHP S+ + K
Sbjct: 521 AKLVKDRKPRKKQPES-KKGKDPNAPKRPMSAYMLWLNASRERIKSDHP-GISITDLSKK 578
Query: 73 GGEKWKSMS 81
GE WK+MS
Sbjct: 579 AGELWKAMS 587
>gi|211520|gb|AAA48685.1| HMG box (bp. 1499..1757), partial [Gallus gallus]
Length = 669
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 4 GKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN 63
G+ KS K+ ++KP K +S K KDPN PKRP SA+ +++ RE+ K DHP
Sbjct: 475 GEKKSSQEGPKIVKDRKPRKKQVES-KKGKDPNVPKRPMSAYMLWLNANREKIKSDHP-G 532
Query: 64 KSVAAVGKAGGEKWKSMS 81
S+ + K GE WK+MS
Sbjct: 533 ISITDLSKKAGELWKAMS 550
>gi|413923415|gb|AFW63347.1| hypothetical protein ZEAMMB73_127996 [Zea mays]
Length = 95
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 28/34 (82%)
Query: 49 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
M EFR++Y+ HP NKSVAAV KA GEKW+SMSE
Sbjct: 1 MSEFRQEYQAQHPGNKSVAAVSKAAGEKWRSMSE 34
>gi|57524786|ref|NP_001005796.1| FACT complex subunit SSRP1 [Gallus gallus]
gi|110283005|sp|Q04678.2|SSRP1_CHICK RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; AltName: Full=T160
gi|53128417|emb|CAG31300.1| hypothetical protein RCJMB04_4n20 [Gallus gallus]
Length = 706
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 13 AKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKA 72
AK+ ++KP K +S K KDPN PKRP SA+ +++ RE+ K DHP S+ + K
Sbjct: 521 AKIVKDRKPRKKQVES-KKGKDPNAPKRPMSAYMLWLNANREKIKSDHP-GISITDLSKK 578
Query: 73 GGEKWKSMS 81
GE WK+MS
Sbjct: 579 AGELWKAMS 587
>gi|326920276|ref|XP_003206400.1| PREDICTED: FACT complex subunit SSRP1-like [Meleagris gallopavo]
Length = 706
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 13 AKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKA 72
AK+ ++KP K +S K KDPN PKRP SA+ +++ RE+ K DHP S+ + K
Sbjct: 521 AKIVKDRKPRKKQVES-KKGKDPNAPKRPMSAYMLWLNANREKIKSDHP-GISITDLSKK 578
Query: 73 GGEKWKSMS 81
GE WK+MS
Sbjct: 579 AGELWKAMS 587
>gi|218117885|dbj|BAH03305.1| structure-specific recognition protein 1 [Gallus gallus]
Length = 706
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 13 AKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKA 72
AK+ ++KP K +S K KDPN PKRP SA+ +++ RE+ K DHP S+ + K
Sbjct: 521 AKIVKDRKPRKKQVES-KKGKDPNAPKRPMSAYMLWLNANREKIKSDHP-GISITDLSKK 578
Query: 73 GGEKWKSMS 81
GE WK+MS
Sbjct: 579 AGELWKAMS 587
>gi|355565174|gb|EHH21663.1| hypothetical protein EGK_04785, partial [Macaca mulatta]
Length = 201
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
R++ K KDPN PKRP SAFF+F E+R + K +HP S+ VGK GE W
Sbjct: 83 RETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVGKKPGEMW 133
>gi|237845111|ref|XP_002371853.1| high mobility group protein [Toxoplasma gondii ME49]
gi|211969517|gb|EEB04713.1| high mobility group protein [Toxoplasma gondii ME49]
gi|221480801|gb|EEE19228.1| high mobility group protein, putative [Toxoplasma gondii GT1]
gi|221501467|gb|EEE27242.1| high mobility group protein, putative [Toxoplasma gondii VEG]
Length = 302
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS-VAAVGKAGGEKWKS 79
P K K KA KDPN PKRP SAF F ++ RE+ + +P+ KS +A VGK GE W
Sbjct: 211 PKKTIVKKTKAKKDPNAPKRPLSAFIFFSKDKREEIIRKNPELKSKLAEVGKMVGEAWGK 270
Query: 80 MSEA 83
+S+A
Sbjct: 271 LSDA 274
>gi|300122042|emb|CBK22616.2| unnamed protein product [Blastocystis hominis]
Length = 224
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 18 NKKP-AKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEK 76
NK+P K K GK DP+KPK+P S + + E REQ KK++P+ K + + K GEK
Sbjct: 5 NKEPKTKENTKRGKKEVDPDKPKKPLSGYMRYCNEQREQVKKENPELK-LTEISKVLGEK 63
Query: 77 WKSMSE 82
WK +SE
Sbjct: 64 WKELSE 69
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPK--NKSVAAVGKAGGEKWKSM 80
+GK DPNKPKRP S++ +F + RE+ K+ +P NK + + G+ WK +
Sbjct: 99 TGKKNADPNKPKRPLSSYIIFSNDKREEVKRKNPDMSNKEITTL---LGKMWKEL 150
>gi|56756695|gb|AAW26520.1| SJCHGC07008 protein [Schistosoma japonicum]
Length = 213
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 36/61 (59%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
K +K K K KDPN P RP SA+F++ E RE+ K SVA V KAGGE W++
Sbjct: 111 KSSKRQTKKQKKPKDPNAPTRPLSAYFLWFNENREKIAKSLSGQNSVAEVAKAGGELWRN 170
Query: 80 M 80
M
Sbjct: 171 M 171
>gi|158300246|ref|XP_320213.4| AGAP012335-PA [Anopheles gambiae str. PEST]
gi|157013066|gb|EAA00360.4| AGAP012335-PA [Anopheles gambiae str. PEST]
Length = 728
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
DPN PKRP++AF +FM REQ KKD P S+ + K GGE WK +
Sbjct: 563 DPNAPKRPSTAFMLFMNASREQIKKDFP-GLSITEMSKKGGELWKEL 608
>gi|392575401|gb|EIW68534.1| hypothetical protein TREMEDRAFT_32029 [Tremella mesenterica DSM
1558]
Length = 116
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+++ K KDPN PKR SA+ F++++R + K DHP + S GK GEKWK+MS A
Sbjct: 19 KRAPKEKKDPNAPKRGLSAYMFFVQDYRPKIKNDHP-DVSFGETGKLLGEKWKAMSAA 75
>gi|358060355|dbj|GAA93760.1| hypothetical protein E5Q_00406 [Mixia osmundae IAM 14324]
Length = 119
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+KSGK KDPN PKRP SA+ + ++ R Q K+D+P + S +GK G +WK + E+
Sbjct: 35 KKSGKKEKDPNAPKRPLSAYMFYSQDKRTQVKEDNP-DASFGELGKILGAQWKDLDES 91
>gi|432953329|ref|XP_004085352.1| PREDICTED: high mobility group protein B2-like isoform 1 [Oryzias
latipes]
Length = 200
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K K G+ KDPN PKRP SAFFVF E+R K+ +P S+ K GE W +
Sbjct: 80 PPKGFGKRGRKRKDPNAPKRPPSAFFVFCSEYRPSVKQQYP-GLSIGDCAKKLGEMWSKL 138
Query: 81 SEA 83
S++
Sbjct: 139 SQS 141
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
KD NKPK SA+ F++ RE+++K +P+ + A K E+WK++S
Sbjct: 4 KDVNKPKGKTSAYAFFVQTCREEHRKKNPEQSVNFAEFSKKCSERWKALS 53
>gi|226479042|emb|CAX73016.1| structure specific recognition protein 1 [Schistosoma japonicum]
Length = 679
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 36/61 (59%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
K +K K + KDPN P RP SA+F++ E RE+ K SVA V KAGGE W++
Sbjct: 577 KSSKRQTKKQEKPKDPNAPTRPLSAYFLWFNENREKIAKSLSGQNSVAEVAKAGGELWRN 636
Query: 80 M 80
M
Sbjct: 637 M 637
>gi|391638|dbj|BAA03261.1| ORF1 [Gallus gallus]
Length = 298
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 13 AKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKA 72
AK+ ++KP K +S K KDPN PKRP SA+ +++ RE+ K DHP S+ + K
Sbjct: 110 AKIVKDRKPRKKQVES-KKGKDPNAPKRPMSAYMLWLNANREKIKSDHP-GISITDLSKK 167
Query: 73 GGEKWKSMS 81
GE WK+MS
Sbjct: 168 AGELWKAMS 176
>gi|348543650|ref|XP_003459296.1| PREDICTED: high mobility group protein B2-like isoform 1
[Oreochromis niloticus]
Length = 200
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K K G+ KDPN PKRP SAFFVF E+R K+ +P S+ K GE W +
Sbjct: 80 PPKGFGKRGRKRKDPNAPKRPPSAFFVFCSEYRPSVKQQYP-GLSIGDCAKKLGEMWSKL 138
Query: 81 SEA 83
S++
Sbjct: 139 SQS 141
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
KD NKPK SA+ F++ RE+++K +P+ + A K E+WK++S
Sbjct: 4 KDINKPKGKTSAYAFFVQTCREEHRKKNPEQSVNFAEFSKKCSERWKALS 53
>gi|226443200|ref|NP_001140081.1| High mobility group-T protein [Salmo salar]
gi|223649418|gb|ACN11467.1| High mobility group-T protein [Salmo salar]
Length = 345
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
K KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++
Sbjct: 228 KRFKDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLT 278
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
KDP KP+ S++ F++ RE++KK HP+ + + + K E+WK+MS
Sbjct: 145 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMS 194
>gi|331220978|ref|XP_003323164.1| high mobility group protein B1 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309302154|gb|EFP78745.1| high mobility group protein B1 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 106
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 8 SDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVA 67
S R KL + P K R K KDPN PKRP SA+ F +++RE+ K ++P + S
Sbjct: 8 SSKRAPKLDCDGNPVKTKR--VKKEKDPNAPKRPLSAYMYFSQDWRERIKTENP-DVSFG 64
Query: 68 AVGKAGGEKWKSMSE 82
+G+ G KWK +SE
Sbjct: 65 EIGRLLGLKWKGLSE 79
>gi|221220328|gb|ACM08825.1| High mobility group protein B3 [Salmo salar]
Length = 203
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G++ KA KDPN PKRP S FFVF E R + K HP N + V K GE W +++++
Sbjct: 82 GKRGKKALKDPNAPKRPPSGFFVFCAEQRPKIKAQHP-NFGIGDVAKKLGEMWNNLTDS 139
>gi|168056739|ref|XP_001780376.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668218|gb|EDQ54830.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 207
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 38/49 (77%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKRPAS F VFME FR+ YK +P++K VAA KAGGEKWK M+E
Sbjct: 107 DPNAPKRPASGFLVFMESFRKTYKDANPESKGVAAAAKAGGEKWKQMTE 155
>gi|126333240|ref|XP_001376238.1| PREDICTED: FACT complex subunit SSRP1 [Monodelphis domestica]
Length = 712
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + GK KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVE-----GKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMS 81
MS
Sbjct: 587 GMS 589
>gi|27502780|gb|AAH42502.1| Ssrp1 protein [Mus musculus]
Length = 711
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 20 KPAKAGRKSGKA--AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
K K+ RKS +A KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE W
Sbjct: 527 KDRKSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIW 585
Query: 78 KSMS 81
K MS
Sbjct: 586 KGMS 589
>gi|395544035|ref|XP_003773918.1| PREDICTED: FACT complex subunit SSRP1 [Sarcophilus harrisii]
Length = 712
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + GK KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVE-----GKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMS 81
MS
Sbjct: 587 GMS 589
>gi|116283314|gb|AAH04848.1| Ssrp1 protein [Mus musculus]
Length = 633
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 20 KPAKAGRKSGKA--AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
K K+ RKS +A KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE W
Sbjct: 527 KDRKSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIW 585
Query: 78 KSMS 81
K MS
Sbjct: 586 KGMS 589
>gi|221220618|gb|ACM08970.1| High mobility group protein B3 [Salmo salar]
gi|223646914|gb|ACN10215.1| High mobility group protein B3 [Salmo salar]
gi|223672777|gb|ACN12570.1| High mobility group protein B3 [Salmo salar]
Length = 201
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G++ KA KDPN PKRP S FFVF E R + K HP N + V K GE W +++++
Sbjct: 82 GKRGKKALKDPNAPKRPPSGFFVFCAEQRPKIKAQHP-NFGIGDVAKKLGEMWNNLTDS 139
>gi|221219912|gb|ACM08617.1| High mobility group protein B3 [Salmo salar]
Length = 201
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G++ KA KDPN PKRP S FFVF E R + K HP N + V K GE W +++++
Sbjct: 82 GKRGKKALKDPNAPKRPPSGFFVFCAEQRPKIKAQHP-NFGIGDVAKKLGEMWNNLTDS 139
>gi|111154063|ref|NP_892035.2| FACT complex subunit SSRP1 [Mus musculus]
gi|209862973|ref|NP_001129553.1| FACT complex subunit SSRP1 [Mus musculus]
gi|110283006|sp|Q08943.2|SSRP1_MOUSE RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; AltName: Full=T160
gi|74138726|dbj|BAE27178.1| unnamed protein product [Mus musculus]
gi|74144584|dbj|BAE27280.1| unnamed protein product [Mus musculus]
gi|74144625|dbj|BAE27299.1| unnamed protein product [Mus musculus]
gi|74177273|dbj|BAE34555.1| unnamed protein product [Mus musculus]
Length = 708
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 20 KPAKAGRKSGKA--AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
K K+ RKS +A KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE W
Sbjct: 527 KDRKSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIW 585
Query: 78 KSMS 81
K MS
Sbjct: 586 KGMS 589
>gi|8170740|gb|AAB19500.2| HMG1-related DNA-binding protein [Mus sp.]
Length = 708
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 20 KPAKAGRKSGKA--AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
K K+ RKS +A KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE W
Sbjct: 527 KDRKSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIW 585
Query: 78 KSMS 81
K MS
Sbjct: 586 KGMS 589
>gi|270014157|gb|EFA10605.1| hypothetical protein TcasGA2_TC012866 [Tribolium castaneum]
Length = 840
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 4/65 (6%)
Query: 16 SVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGE 75
+V++KP + K K +KD NKPKRP++AF +++ E R++ K D+P K + + K GGE
Sbjct: 662 TVSEKPRQ---KRAKKSKDENKPKRPSTAFMLWLNEMRDKIKADNPGIK-ITEIAKKGGE 717
Query: 76 KWKSM 80
WK +
Sbjct: 718 MWKEL 722
>gi|148707462|gb|EDL39409.1| mCG8212 [Mus musculus]
Length = 145
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
+ +PAK G+K KDPN PKRP S FF+F EF + K +P S+ V K GE W
Sbjct: 26 DYRPAKGGKK-----KDPNAPKRPPSGFFLFCSEFHPKIKFTNP-GISIGDVAKKLGEMW 79
Query: 78 KSMSEAVSGLV 88
K++S++ + V
Sbjct: 80 KNLSDSEAAYV 90
>gi|320168039|gb|EFW44938.1| hypothetical protein CAOG_02944 [Capsaspora owczarzaki ATCC 30864]
Length = 193
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P G KSGK +KDPN PKRP SA+ F R + +K +P + ++ A+ GE W+ +
Sbjct: 85 PVSTGGKSGKKSKDPNAPKRPPSAYICFANAVRPELRKTYPSD-TMPAISTKIGELWRQL 143
Query: 81 SE 82
++
Sbjct: 144 TD 145
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
R + K KDPNKPK+P +AF F RE+ K +P K + + G+ W + EA
Sbjct: 3 RGNKKDEKDPNKPKKPTTAFMYFSNAMRERVKTQNPGLK-MTDIASVLGKLWGQLPEA 59
>gi|405963576|gb|EKC29138.1| FACT complex subunit SSRP1 [Crassostrea gigas]
Length = 757
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 10 TRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAV 69
+R+AK K P +K K+ KDPN PKRP SA+F++ RE+ KKD P + S+ +
Sbjct: 532 SRSAKTVREKLPGSEKKKKKKSKKDPNAPKRPQSAYFLWFNANREELKKDTP-DISITDL 590
Query: 70 GKAGGEKWKSMSEA 83
K GE WK M +
Sbjct: 591 SKKAGEVWKQMEDT 604
>gi|401402785|ref|XP_003881334.1| high mobility group protein, related [Neospora caninum Liverpool]
gi|325115746|emb|CBZ51301.1| high mobility group protein, related [Neospora caninum Liverpool]
Length = 94
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS-VAAVGKAGGEKWKS 79
P K K KA KDPN PKRP SAF F ++ RE+ + +P+ KS +A VGK GE W
Sbjct: 3 PKKTIVKKTKAKKDPNAPKRPLSAFIFFSKDKREEIIRKNPELKSKLAEVGKMVGEAWGK 62
Query: 80 MSEA 83
+S+A
Sbjct: 63 LSDA 66
>gi|91091374|ref|XP_973014.1| PREDICTED: similar to AGAP012335-PA [Tribolium castaneum]
Length = 712
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 4/65 (6%)
Query: 16 SVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGE 75
+V++KP +K K +KD NKPKRP++AF +++ E R++ K D+P K + + K GGE
Sbjct: 534 TVSEKPR---QKRAKKSKDENKPKRPSTAFMLWLNEMRDKIKADNPGIK-ITEIAKKGGE 589
Query: 76 KWKSM 80
WK +
Sbjct: 590 MWKEL 594
>gi|195025405|ref|XP_001986052.1| GH21151 [Drosophila grimshawi]
gi|193902052|gb|EDW00919.1| GH21151 [Drosophila grimshawi]
Length = 744
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
KD NKPKRP +AF +++ + REQ K+D+P K V + K GGE WK +
Sbjct: 555 KDSNKPKRPTTAFMLWLNDTREQIKRDNPGIK-VTEIAKKGGEMWKEL 601
>gi|344252855|gb|EGW08959.1| TRAF family member-associated NF-kappa-B activator [Cricetulus
griseus]
Length = 427
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKRP SAFF+F E+R ++K +HP S+ V K GE W + +
Sbjct: 303 KDPNAPKRPPSAFFLFCSEYRPKFKGEHP-GLSIGDVAKKLGEMWNNTA 350
>gi|449681405|ref|XP_002159252.2| PREDICTED: FACT complex subunit SSRP1-like [Hydra magnipapillata]
Length = 774
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
K+P K S K KD N PKRP SAF ++M E RE+ K D+P + + K GGE+WK
Sbjct: 528 KRPKKEEGSSKKKKKDENAPKRPMSAFMLYMNEVREKIKADNP-GIAFTDIAKKGGEQWK 586
Query: 79 SMSE 82
++++
Sbjct: 587 TLTD 590
>gi|409075359|gb|EKM75740.1| hypothetical protein AGABI1DRAFT_116212 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426198009|gb|EKV47935.1| hypothetical protein AGABI2DRAFT_191645 [Agaricus bisporus var.
bisporus H97]
Length = 262
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 6 SKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS 65
S + R A ++++ A RK KDPN PKRPAS++ +F E R+Q K HP+ +
Sbjct: 49 SNTHKRKADVALDDDEAPKKRKRNAKPKDPNAPKRPASSYILFQNEIRKQLKDQHPE-LT 107
Query: 66 VAAVGKAGGEKWKSMSE 82
A + + WK MSE
Sbjct: 108 NAELLNMISDIWKKMSE 124
>gi|195123163|ref|XP_002006078.1| GI18750 [Drosophila mojavensis]
gi|193911146|gb|EDW10013.1| GI18750 [Drosophila mojavensis]
Length = 734
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
D NKPKRP +AF +++ E REQ K+D+P K V + K GGE WK +
Sbjct: 557 DSNKPKRPTTAFMLWLSETREQIKRDNPGIK-VTEIAKKGGEMWKEL 602
>gi|410930542|ref|XP_003978657.1| PREDICTED: high mobility group protein B2-like [Takifugu rubripes]
Length = 201
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K K G+ KDPN PKRP SAFFVF E+R K+ +P S+ K GE W +
Sbjct: 80 PPKGFGKRGRKRKDPNAPKRPPSAFFVFCSEYRPSVKQQYP-GLSIGDCAKKLGEMWSKL 138
Query: 81 SEA 83
+++
Sbjct: 139 TQS 141
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
KD NKPK SA+ F++ RE+++K +P+ + A K E+WK +S
Sbjct: 4 KDVNKPKGKTSAYAFFVQTCREEHRKKNPEQSVNFAEFSKKCSERWKGLS 53
>gi|443684506|gb|ELT88434.1| hypothetical protein CAPTEDRAFT_172235 [Capitella teleta]
Length = 734
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPNKPKRP SA+F+++ E RE+ K ++P + V + K G++WK +++
Sbjct: 546 DPNKPKRPQSAYFLWLNEMREEIKAENP-DAGVTDIAKLAGQRWKEVTD 593
>gi|221220042|gb|ACM08682.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
K KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++
Sbjct: 86 KRFKDPNAPKRPSSAFFIFCADFRPQVKVETP-GLSIGDVAKKLGEKWNNLT 136
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
KDP KP+ S++ F++ RE++KK HP+ + + + K E+WK+MS
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMS 52
>gi|221221758|gb|ACM09540.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
K KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++
Sbjct: 86 KRFKDPNAPKRPSSAFFIFCADFRPQVKVETP-GLSIGDVAKKLGEKWNNLT 136
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
KDP KP+ S++ F++ RE++KK HP+ + + + K E+W++MS
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWRTMS 52
>gi|449501868|ref|XP_004174468.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1
[Taeniopygia guttata]
Length = 705
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
++KP K +S K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE W
Sbjct: 526 DRKPRKKQPES-KKGKDPNAPKRPMSAYMLWLNANREKIKSDHP-GISITDLSKKAGELW 583
Query: 78 KSMS 81
K+MS
Sbjct: 584 KAMS 587
>gi|223646906|gb|ACN10211.1| High mobility group-T protein [Salmo salar]
gi|223672769|gb|ACN12566.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
K KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++
Sbjct: 86 KRFKDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLT 136
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
KDP KP+ S++ F++ RE++KK HP+ + + + K E+WK+MS
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMS 52
>gi|221221148|gb|ACM09235.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
K KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++
Sbjct: 86 KRFKDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLT 136
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
KDP KP+ S++ F++ RE++KK HP+ + + + K E+W++MS
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWRTMS 52
>gi|224072172|ref|XP_002303636.1| high mobility group family [Populus trichocarpa]
gi|222841068|gb|EEE78615.1| high mobility group family [Populus trichocarpa]
Length = 480
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSG 86
K K KDP KPK+P SAFF+F E R +NKSV V K GE+WK+M+E G
Sbjct: 262 KKTKKEKDPLKPKQPLSAFFLFCNERRAAL---LAENKSVLEVAKIAGEEWKNMTEKRRG 318
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSE 82
DPNKPK+PAS+F +F +E R+ + P N ++ A+ KWK ++E
Sbjct: 394 DPNKPKKPASSFLLFSKETRKSLMDERPGINNSTLTAMISV---KWKELNE 441
>gi|213513415|ref|NP_001133101.1| high mobility group protein B1 [Salmo salar]
gi|197631937|gb|ACH70692.1| high-mobility group box 1 [Salmo salar]
Length = 203
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLT 136
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
KDP KP+ S++ F++ RE++KK HP+ + + + K E+W++MS
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWRTMS 52
>gi|1085210|pir||S48708 high-mobility-group-1 protein - trout
Length = 204
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
K KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++
Sbjct: 86 KRFKDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLT 136
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
KDP KP+ S++ F++ R ++KK HP+ + + + K E+WK+MS
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCRIEHKKKHPEASVNFSEFSKKCSERWKTMS 52
>gi|213515010|ref|NP_001133971.1| High mobility group protein B3 [Salmo salar]
gi|209156012|gb|ACI34238.1| High mobility group protein B3 [Salmo salar]
gi|223648118|gb|ACN10817.1| High mobility group protein B3 [Salmo salar]
Length = 206
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K GRK KDPN PKRP+S FF+F + R + K HP + + V K GE+W ++++
Sbjct: 83 KKGRK-----KDPNAPKRPSSGFFIFCADHRPKIKAQHP-SLGIGDVAKKLGEQWNNLTD 136
Query: 83 AVSGLVLV 90
A L+
Sbjct: 137 ATKQPYLI 144
>gi|609551|gb|AAA58771.1| HMG-1 [Oncorhynchus mykiss]
Length = 204
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
K KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++
Sbjct: 86 KRFKDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLT 136
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
KDP KP+ S++ F++ RE++KK HP+ + + + K E+WK+MS
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMS 52
>gi|221221482|gb|ACM09402.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
K KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++
Sbjct: 86 KRFKDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLT 136
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
KDP KP+ S++ F++ RE++KK HP+ + + + K E+W++MS
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWRTMS 52
>gi|349604600|gb|AEQ00107.1| High mobility group protein B3-like protein, partial [Equus
caballus]
Length = 118
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
GK KDPN PKRP S FF+F EFR + K +P S+ V K GE W ++S++
Sbjct: 1 GKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDS 54
>gi|85000895|ref|XP_955166.1| high-mobility-group (HMG) protein [Theileria annulata strain
Ankara]
gi|65303312|emb|CAI75690.1| high-mobility-group (HMG) protein, putative [Theileria annulata]
Length = 94
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSE 82
AG+KS +A KDPN PKR S++ F +E R + +D+P + VAAVGK G W S+ E
Sbjct: 9 AGKKSKRAKKDPNAPKRALSSYMFFAKEKRAELVRDNPDLARDVAAVGKLVGAAWNSLDE 68
Query: 83 A 83
+
Sbjct: 69 S 69
>gi|185135647|ref|NP_001118186.1| high mobility group-T protein [Oncorhynchus mykiss]
gi|123382|sp|P07746.2|HMGT_ONCMY RecName: Full=High mobility group-T protein; Short=HMG-T; AltName:
Full=HMG-T1; Short=HMG-1
gi|64328|emb|CAA26500.1| unnamed protein product [Oncorhynchus mykiss]
Length = 204
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
K KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++
Sbjct: 86 KRFKDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLT 136
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
KDP KP+ S++ F++ RE++KK HP+ + + + K E+WK+MS
Sbjct: 3 KDPRKPRGKMSSYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMS 52
>gi|89475586|gb|ABD73318.1| high-mobility group box 1 [Oncorhynchus mykiss]
Length = 154
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
K KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++
Sbjct: 86 KRFKDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLT 136
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
KDP KP+ S++ F++ RE++KK HP+ + + + K E+W++MS
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWRTMS 52
>gi|414585863|tpg|DAA36434.1| TPA: hypothetical protein ZEAMMB73_396569 [Zea mays]
Length = 119
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KR + FF F+ EFR QY + HP+ K V V KA GEKW+SMS+
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMSD 63
>gi|47190944|emb|CAF93003.1| unnamed protein product [Tetraodon nigroviridis]
Length = 204
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K K G+ KDPN PKRP SAFFVF E+R K+ P S+ K GE W +
Sbjct: 83 PPKGFGKRGRKRKDPNAPKRPPSAFFVFCSEYRPSVKQQFP-GLSIGDCAKKLGEMWSKL 141
Query: 81 SEA 83
S++
Sbjct: 142 SQS 144
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
KD NKPK SA+ F++ RE+++K +P+ + A K E+WK++S
Sbjct: 7 KDVNKPKGKTSAYAFFVQTCREEHRKKNPEQSVNFAEFSKKCSERWKALS 56
>gi|195627962|gb|ACG35811.1| HMG1/2-like protein [Zea mays]
Length = 123
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KR + FF F+ EFR QY + HP+ K V V KA GEKW+SMS+
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMSD 63
>gi|162460188|ref|NP_001105108.1| nucleosome/chromatin assembly factor D [Zea mays]
gi|4995921|emb|CAB44297.1| HMG1 protein [Zea mays]
Length = 123
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KR + FF F+ EFR QY + HP+ K V V KA GEKW+SMS+
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMSD 63
>gi|338712138|ref|XP_001497140.3| PREDICTED: FACT complex subunit SSRP1 [Equus caballus]
Length = 680
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS---EAVSG 86
K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS + SG
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMSKEKKEFSG 597
Query: 87 LVL 89
+L
Sbjct: 598 FLL 600
>gi|414585862|tpg|DAA36433.1| TPA: HMG1 protein [Zea mays]
Length = 123
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KR + FF F+ EFR QY + HP+ K V V KA GEKW+SMS+
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMSD 63
>gi|62362190|gb|AAX81532.1| amphiHMG1/2-like protein [Adineta ricciae]
Length = 142
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+A S KA+KDPN PKRP SAFF+F ++ R KK P + SV + K G +WK +S+
Sbjct: 3 RAAGSSKKASKDPNAPKRPLSAFFLFSQDERPDIKKKSP-SLSVGDISKEIGSRWKKVSD 61
Query: 83 AV 84
V
Sbjct: 62 DV 63
>gi|320091041|gb|ADW08807.1| high mobility group box X [Lethenteron camtschaticum]
Length = 225
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 21 PAKAGR--KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
PA+ GR + + KDPN PKRP SAFF+F +FR Q K D+P + + K GE W
Sbjct: 80 PARGGRGGPAQRKKKDPNAPKRPPSAFFIFCADFRPQIKADNP-GMVIGTIAKRLGEMW 137
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAV--GKAGGEKWKSMS 81
DP+KP+ S++ F++ RE++KK HP N SVA + E+WK +S
Sbjct: 5 DPSKPRGRMSSYAYFVQTCREEHKKKHP-NDSVAFTDFSRKCSERWKGLS 53
>gi|432113411|gb|ELK35821.1| FACT complex subunit SSRP1 [Myotis davidii]
Length = 709
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK+MS
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKAMS 589
>gi|403254821|ref|XP_003920153.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1 [Saimiri
boliviensis boliviensis]
Length = 826
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 650 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 703
Query: 79 SMS 81
MS
Sbjct: 704 GMS 706
>gi|395844161|ref|XP_003794831.1| PREDICTED: uncharacterized protein LOC100953571 [Otolemur
garnettii]
Length = 357
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+K KDPN PK P S FF+F EFR + K +P S+ V K GE W S+
Sbjct: 247 PAKGGKK-----KDPNAPKTPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNSL 300
Query: 81 SEA 83
S++
Sbjct: 301 SDS 303
>gi|354488105|ref|XP_003506211.1| PREDICTED: FACT complex subunit SSRP1-like isoform 1 [Cricetulus
griseus]
gi|354488107|ref|XP_003506212.1| PREDICTED: FACT complex subunit SSRP1-like isoform 2 [Cricetulus
griseus]
gi|344253527|gb|EGW09631.1| FACT complex subunit SSRP1 [Cricetulus griseus]
Length = 709
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
K + + AK++ ++K K ++ K KDPN PKRP SA+ +++ RE+ K DHP
Sbjct: 515 KKRKQLKRAKMAKDRKSRKKSSEA-KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GI 572
Query: 65 SVAAVGKAGGEKWKSMS 81
S+ + K GE WK MS
Sbjct: 573 SITDLSKKAGEIWKGMS 589
>gi|225708606|gb|ACO10149.1| High mobility group protein B2 [Osmerus mordax]
Length = 216
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
G K GK KDPN PKRP SAFFVF + R + K +HP S+ + K GE W
Sbjct: 83 GTKVGKRKKDPNAPKRPPSAFFVFCSDHRARIKGEHP-GISIGDIAKKLGELW 134
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
KDPNKP+ S++ F++ RE++KK HP + + K E+WK+MS
Sbjct: 3 GKDPNKPRGKTSSYAFFVQTCREEHKKKHPGTSVNFSEFSKKCSERWKTMS 53
>gi|356494961|ref|XP_003516349.1| PREDICTED: high mobility group B protein 7-like [Glycine max]
Length = 178
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 10/57 (17%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVLV 90
DPN PKRP + FFVF+++FR+ +K+ +P +K VGK EAV G+V+V
Sbjct: 99 DPNMPKRPPTTFFVFLDDFRKSFKEANPDSKDAKRVGK----------EAVWGMVIV 145
>gi|345320167|ref|XP_001521836.2| PREDICTED: FACT complex subunit SSRP1-like, partial
[Ornithorhynchus anatinus]
Length = 295
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
GK KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK M+
Sbjct: 118 GKKGKDPNAPKRPMSAYMLWLNASREKIKADHP-GISITDLSKKAGEIWKGMT 169
>gi|224080027|ref|XP_002305996.1| high mobility group family [Populus trichocarpa]
gi|222848960|gb|EEE86507.1| high mobility group family [Populus trichocarpa]
Length = 165
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 32/39 (82%)
Query: 43 SAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
+AFF F+E+FR+++++ +P KS+ VGKA GEKWK+M+
Sbjct: 82 TAFFYFLEDFRKEFQEQNPDVKSMREVGKACGEKWKTMT 120
>gi|281343903|gb|EFB19487.1| hypothetical protein PANDA_011742 [Ailuropoda melanoleuca]
Length = 607
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 516 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 569
Query: 79 SMS 81
MS
Sbjct: 570 GMS 572
>gi|444705434|gb|ELW46861.1| FACT complex subunit SSRP1 [Tupaia chinensis]
Length = 704
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 528 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 581
Query: 79 SMS 81
MS
Sbjct: 582 GMS 584
>gi|426245460|ref|XP_004023562.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1 [Ovis
aries]
Length = 703
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
K KDPN PKRP SA+ +++ RE+ K DHP SV + K GE WK MS
Sbjct: 533 KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISVTDLSKKAGEIWKGMS 583
>gi|410057780|ref|XP_003954279.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1 [Pan
troglodytes]
Length = 709
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMS 81
MS
Sbjct: 587 GMS 589
>gi|60552474|gb|AAH91486.1| SSRP1 protein, partial [Homo sapiens]
Length = 633
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMS 81
MS
Sbjct: 587 GMS 589
>gi|155371817|ref|NP_001094511.1| FACT complex subunit SSRP1 [Bos taurus]
gi|151554654|gb|AAI49986.1| SSRP1 protein [Bos taurus]
gi|440894802|gb|ELR47155.1| FACT complex subunit SSRP1 [Bos grunniens mutus]
Length = 709
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
K KDPN PKRP SA+ +++ RE+ K DHP SV + K GE WK MS
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISVTDLSKKAGEIWKGMS 589
>gi|297688746|ref|XP_002821837.1| PREDICTED: FACT complex subunit SSRP1 isoform 2 [Pongo abelii]
Length = 709
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMS 81
MS
Sbjct: 587 GMS 589
>gi|296479522|tpg|DAA21637.1| TPA: structure specific recognition protein 1 [Bos taurus]
Length = 709
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
K KDPN PKRP SA+ +++ RE+ K DHP SV + K GE WK MS
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISVTDLSKKAGEIWKGMS 589
>gi|452839855|gb|EME41794.1| hypothetical protein DOTSEDRAFT_74007 [Dothistroma septosporum
NZE10]
Length = 108
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 46/78 (58%), Gaps = 7/78 (8%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
K K+ TR +K +V+K AG GK KDPN PKR SA+ F E R++ + D+P K
Sbjct: 3 KEKATTRGSKKAVDKS---AG---GKKKKDPNMPKRGLSAYMFFANEQRDKVRDDNPGIK 56
Query: 65 SVAAVGKAGGEKWKSMSE 82
VGK GEKWK +SE
Sbjct: 57 -FGEVGKQLGEKWKGLSE 73
>gi|335281869|ref|XP_003353912.1| PREDICTED: FACT complex subunit SSRP1 [Sus scrofa]
Length = 709
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPTEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMS 81
MS
Sbjct: 587 GMS 589
>gi|344299407|ref|XP_003421377.1| PREDICTED: FACT complex subunit SSRP1 [Loxodonta africana]
Length = 709
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMS 81
MS
Sbjct: 587 GMS 589
>gi|148235321|ref|NP_001089163.1| high mobility group box 3 [Xenopus laevis]
gi|55824420|gb|AAV66347.1| high mobility group B3b protein [Xenopus laevis]
gi|114108280|gb|AAI23148.1| LOC734200 protein [Xenopus laevis]
Length = 201
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K GK KDPN PKRP S FF+F EFR + K +P S+ + K GE W ++S+
Sbjct: 82 KKGKRNKDPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDIAKKLGEMWNNLSD 136
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
A +DP KPK SA+ F++ RE++KK +P+ + A K E+W+SMS
Sbjct: 2 AKRDPKKPKGKMSAYAYFVQTCREEHKKKNPEIPVNFAEFSKKCSERWRSMS 53
>gi|296218242|ref|XP_002755324.1| PREDICTED: FACT complex subunit SSRP1 [Callithrix jacchus]
Length = 709
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMS 81
MS
Sbjct: 587 GMS 589
>gi|223649496|gb|ACN11506.1| High mobility group protein B3 [Salmo salar]
Length = 207
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K GRK KDPN PKRP S FF+F + R + K HP + + V K GE+W ++++
Sbjct: 83 KKGRK-----KDPNAPKRPPSGFFIFCADHRPKIKAQHP-SLGIGDVAKKLGEQWNNLTD 136
Query: 83 AVSGLVLV 90
A L+
Sbjct: 137 ATKQPYLI 144
>gi|332252411|ref|XP_003275348.1| PREDICTED: FACT complex subunit SSRP1 [Nomascus leucogenys]
Length = 709
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMS 81
MS
Sbjct: 587 GMS 589
>gi|301774634|ref|XP_002922750.1| PREDICTED: FACT complex subunit SSRP1-like [Ailuropoda melanoleuca]
Length = 709
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMS 81
MS
Sbjct: 587 GMS 589
>gi|410973949|ref|XP_003993410.1| PREDICTED: FACT complex subunit SSRP1 [Felis catus]
Length = 709
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMS 81
MS
Sbjct: 587 GMS 589
>gi|383872505|ref|NP_001244820.1| FACT complex subunit SSRP1 [Macaca mulatta]
gi|402893460|ref|XP_003909913.1| PREDICTED: FACT complex subunit SSRP1 [Papio anubis]
gi|355566511|gb|EHH22890.1| Facilitates chromatin transcription complex subunit SSRP1 [Macaca
mulatta]
gi|355752113|gb|EHH56233.1| Facilitates chromatin transcription complex subunit SSRP1 [Macaca
fascicularis]
gi|380784229|gb|AFE63990.1| FACT complex subunit SSRP1 [Macaca mulatta]
gi|383421069|gb|AFH33748.1| FACT complex subunit SSRP1 [Macaca mulatta]
gi|384949008|gb|AFI38109.1| FACT complex subunit SSRP1 [Macaca mulatta]
Length = 709
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMS 81
MS
Sbjct: 587 GMS 589
>gi|4507241|ref|NP_003137.1| FACT complex subunit SSRP1 [Homo sapiens]
gi|397512296|ref|XP_003826485.1| PREDICTED: FACT complex subunit SSRP1 [Pan paniscus]
gi|426368405|ref|XP_004051198.1| PREDICTED: FACT complex subunit SSRP1 [Gorilla gorilla gorilla]
gi|730840|sp|Q08945.1|SSRP1_HUMAN RecName: Full=FACT complex subunit SSRP1; AltName:
Full=Chromatin-specific transcription elongation factor
80 kDa subunit; AltName: Full=Facilitates chromatin
transcription complex 80 kDa subunit; Short=FACT 80 kDa
subunit; Short=FACTp80; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; Short=hSSRP1; AltName: Full=T160
gi|184242|gb|AAA58660.1| high mobility group box [Homo sapiens]
gi|13477285|gb|AAH05116.1| Structure specific recognition protein 1 [Homo sapiens]
gi|119594140|gb|EAW73734.1| structure specific recognition protein 1, isoform CRA_a [Homo
sapiens]
gi|119594141|gb|EAW73735.1| structure specific recognition protein 1, isoform CRA_a [Homo
sapiens]
gi|123993967|gb|ABM84585.1| structure specific recognition protein 1 [synthetic construct]
gi|123998313|gb|ABM86758.1| structure specific recognition protein 1 [synthetic construct]
gi|410226712|gb|JAA10575.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410226714|gb|JAA10576.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410262712|gb|JAA19322.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410262714|gb|JAA19323.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410305268|gb|JAA31234.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410305270|gb|JAA31235.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410351021|gb|JAA42114.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410351025|gb|JAA42116.1| structure specific recognition protein 1 [Pan troglodytes]
Length = 709
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMS 81
MS
Sbjct: 587 GMS 589
>gi|348556930|ref|XP_003464273.1| PREDICTED: FACT complex subunit SSRP1-like [Cavia porcellus]
Length = 709
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
K + + AK++ ++K K ++ K KDPN PKRP SA+ +++ RE+ K DHP
Sbjct: 515 KKRKQLKRAKMTKDRKSRKKTVEA-KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GI 572
Query: 65 SVAAVGKAGGEKWKSMS 81
S+ + K GE WK MS
Sbjct: 573 SITDLSKKAGEIWKGMS 589
>gi|410351023|gb|JAA42115.1| structure specific recognition protein 1 [Pan troglodytes]
Length = 712
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 536 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 589
Query: 79 SMS 81
MS
Sbjct: 590 GMS 592
>gi|449269673|gb|EMC80424.1| High mobility group protein B1 [Columba livia]
Length = 209
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
K KDPN PKRP SAFF+F EFR + K +HP S+ V K GE W
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEAVSG 86
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS G
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKG 58
>gi|345783817|ref|XP_859953.2| PREDICTED: FACT complex subunit SSRP1 isoform 4 [Canis lupus
familiaris]
Length = 711
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 535 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKADHP-GISITDLSKKAGEIWK 588
Query: 79 SMS 81
MS
Sbjct: 589 GMS 591
>gi|417404085|gb|JAA48818.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 709
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMS 589
>gi|395821450|ref|XP_003784053.1| PREDICTED: high mobility group protein B1-like [Otolemur garnettii]
Length = 221
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNVPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGEVAKKLGEMW 133
>gi|1806648|gb|AAB41544.1| structure-specific recognition protein 1 [Bos taurus]
Length = 460
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
K KDPN PKRP SA+ +++ RE+ K DHP SV + K GE WK MS
Sbjct: 290 KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISVTDLSKKAGEIWKGMS 340
>gi|395850201|ref|XP_003797684.1| PREDICTED: high mobility group protein B1 [Otolemur garnettii]
Length = 289
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|387016392|gb|AFJ50315.1| High mobility group protein B1 [Crotalus adamanteus]
Length = 215
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
S K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + S
Sbjct: 85 SKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTS 137
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|431918516|gb|ELK17735.1| 182 kDa tankyrase-1-binding protein [Pteropus alecto]
Length = 2600
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREKIKLDHP-GISITDLSKKAGEIWKGMS 589
>gi|300677966|gb|ADK27290.1| high-mobility-group B1a [Gekko japonicus]
Length = 215
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
S K KDPN PKRP SAFF+F EFR + K +HP S+ V K GE W
Sbjct: 85 SKKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|402882719|ref|XP_003904882.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Papio anubis]
Length = 132
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 6/63 (9%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+K+ DPN PKRP S FF+F EF + K +P S+ V K GE WK++
Sbjct: 18 PAKGGKKN-----DPNAPKRPLSGFFLFCSEFHPKMKSTNP-GISIGDVAKKLGEMWKNL 71
Query: 81 SEA 83
+++
Sbjct: 72 NDS 74
>gi|193787044|dbj|BAG51867.1| unnamed protein product [Homo sapiens]
Length = 176
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 51 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 94
>gi|225715078|gb|ACO13385.1| High mobility group protein B3 [Esox lucius]
Length = 204
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAV 84
G++ KA KDPN PKRP S FFVF E R + K HP + + V K GE W +++++
Sbjct: 82 GKRGKKAKKDPNAPKRPPSGFFVFCAEQRPKIKAQHP-SFGIGDVAKKLGEAWNNLTDSS 140
Query: 85 SGLVLV 90
L
Sbjct: 141 KQPYLA 146
>gi|357513707|ref|XP_003627142.1| HMG1/2-like protein [Medicago truncatula]
gi|355521164|gb|AET01618.1| HMG1/2-like protein [Medicago truncatula]
Length = 248
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
K AK G++ + KD N KR + FFVFM+EFR+ +K+ + +K V VGK GEKW+
Sbjct: 190 KRAKVGKR--EKVKDSNAAKRSPTDFFVFMDEFRKTFKEANLDSKDVKRVGKEDGEKWRQ 247
>gi|395850653|ref|XP_003797893.1| PREDICTED: uncharacterized protein LOC100942737 [Otolemur
garnettii]
Length = 633
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KDPN PKRP SAFF F E+R + K +HP S+ V + GE W + +E
Sbjct: 513 KDPNAPKRPPSAFFWFCSEYRPKIKGEHP-GLSIGDVAEKLGEMWSNTAE 561
>gi|118343940|ref|NP_001071792.1| transcription factor protein [Ciona intestinalis]
gi|70570753|dbj|BAE06615.1| transcription factor protein [Ciona intestinalis]
Length = 310
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
K +DPN+PKRP SA+F+F+ +FR+ Y K+ + K GE W S+S+A
Sbjct: 122 KKPRDPNRPKRPPSAYFLFLADFRKNYPG---KSDPAKEITKKAGEAWNSLSDA 172
>gi|118344422|ref|NP_001072036.1| transcription factor protein [Ciona intestinalis]
gi|70570508|dbj|BAE06614.1| transcription factor protein [Ciona intestinalis]
Length = 447
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
K +DPN+PKRP SA+F+F+ +FR+ Y K+ + K GE W S+S+A
Sbjct: 259 KKPRDPNRPKRPPSAYFLFLADFRKNYPG---KSDPAKEITKKAGEAWNSLSDA 309
>gi|392333067|ref|XP_003752781.1| PREDICTED: high mobility group protein B3-like [Rattus norvegicus]
gi|392353165|ref|XP_001067503.2| PREDICTED: high mobility group protein B3-like [Rattus norvegicus]
Length = 212
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
K GK KDPN PKRP S FF+F EFR + K +P S+ V K GE W ++S++
Sbjct: 96 KGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIEDVVKKLGEMWNNLSDS 151
>gi|224043266|ref|XP_002194652.1| PREDICTED: high mobility group protein B1 [Taeniopygia guttata]
Length = 215
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F EFR + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEAVSG 86
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS G
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKG 58
>gi|395858039|ref|XP_003801382.1| PREDICTED: FACT complex subunit SSRP1 [Otolemur garnettii]
Length = 710
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
K +DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS
Sbjct: 539 KKGRDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMS 589
>gi|440912073|gb|ELR61675.1| Putative high mobility group protein B3-like protein, partial [Bos
grunniens mutus]
Length = 190
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 14 KLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAG 73
K+ N++ G G KDPN PKRP S FF+F EF + K +P S+ V K
Sbjct: 67 KVHYNQEMKDYGSAKGGKKKDPNAPKRPPSGFFLFFSEFCSKIKSTNP-GISIGDVAKKL 125
Query: 74 GEKWKSMSEAVSGLVL 89
GE W ++S++ L +
Sbjct: 126 GEMWNNLSDSKKQLYI 141
>gi|5815432|gb|AAD52670.1|AF178849_1 high mobility group protein HMG1 [Gallus gallus]
Length = 214
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F EFR + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEAVSG 86
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS G
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKG 58
>gi|380083124|gb|AFD33645.1| high mobility group box 1, partial [Gallus gallus]
Length = 185
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F EFR + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEAVSG 86
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS G
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKG 58
>gi|45382473|ref|NP_990233.1| high mobility group protein B1 [Gallus gallus]
gi|326914268|ref|XP_003203448.1| PREDICTED: high mobility group protein B1-like [Meleagris
gallopavo]
gi|4140289|emb|CAA76978.1| high mobility group 1 protein [Gallus gallus]
gi|60098903|emb|CAH65282.1| hypothetical protein RCJMB04_15a21 [Gallus gallus]
Length = 215
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F EFR + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEAVSG 86
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS G
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKG 58
>gi|444721192|gb|ELW61941.1| High mobility group protein B1 [Tupaia chinensis]
Length = 300
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
>gi|322517988|gb|ADX06860.1| high mobility group protein B1 [Sciaenops ocellatus]
Length = 206
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
PA+ G+K K KDPN PKRP SAFF+F EFR + K + P ++ V K GE W
Sbjct: 79 PARGGKK--KKYKDPNAPKRPPSAFFIFCSEFRPKVKGEAP-GLTIGEVAKRLGEMW 132
>gi|335892930|gb|AEH59760.1| high mobility group box 2 [Lethenteron camtschaticum]
Length = 194
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
N P K RK+ KDPN PKRP SAFFVF E R + K DHP + + K GE W
Sbjct: 77 NYVPPKGKRKT----KDPNAPKRPPSAFFVFCSEHRPKVKADHP-GLGIGEIAKRLGEMW 131
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
+P KP+ S++ F++ RE++KK HP+ + + A K E+WK+MS
Sbjct: 5 EPGKPRGKMSSYAYFVQTCREEHKKKHPEASVNFAEFSKKCSERWKTMS 53
>gi|238586980|ref|XP_002391336.1| hypothetical protein MPER_09251 [Moniliophthora perniciosa FA553]
gi|215455859|gb|EEB92266.1| hypothetical protein MPER_09251 [Moniliophthora perniciosa FA553]
Length = 269
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K KDPN PKRPAS++ ++ E R+ K+ HP N S A + ++W MSE
Sbjct: 70 KRTKDPNAPKRPASSYIIYQNEVRQTIKEQHP-NLSPAEIRTLISQEWAKMSE 121
>gi|427788863|gb|JAA59883.1| Putative nucleosome-binding factor spn pob3 subunit [Rhipicephalus
pulchellus]
Length = 734
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
K+P + K +D NKPKRP SA+F+++ E RE+ KKD+P S+ V K GE WK
Sbjct: 542 KEPGMRKPRRPKKERDANKPKRPPSAYFLWLAENREKIKKDNP-GFSITDVTKRAGELWK 600
Query: 79 SMSE 82
+++
Sbjct: 601 EVTD 604
>gi|358255365|dbj|GAA57072.1| high mobility group protein B1, partial [Clonorchis sinensis]
Length = 778
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
PA G KS K KDPN PK+ SAFF+F + R + K DHP K V+ + K G++W++
Sbjct: 620 PADEG-KSRKRKKDPNAPKKALSAFFLFCNDERPKVKADHPDWK-VSEIAKELGKRWET 676
>gi|71012570|ref|XP_758511.1| hypothetical protein UM02364.1 [Ustilago maydis 521]
gi|46098169|gb|EAK83402.1| hypothetical protein UM02364.1 [Ustilago maydis 521]
Length = 125
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+++ KA KDP+ PKRP SA+ F ++ RE+ K +P+ VG+ G KWK MSEA
Sbjct: 42 KRTTKAKKDPDAPKRPLSAYMFFSQDQRERVKNANPE-AGFGEVGRLLGAKWKEMSEA 98
>gi|440900657|gb|ELR51738.1| High mobility group protein B1 [Bos grunniens mutus]
Length = 224
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|410917315|ref|XP_003972132.1| PREDICTED: high mobility group protein B2-like [Takifugu rubripes]
Length = 214
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K + S K KDPN PKRP SAFFVF + R + K+D+P S+ + K GE W +
Sbjct: 78 PPKGSKVSRKKKKDPNAPKRPPSAFFVFCSDHRPKIKEDNP-GISIGDIAKKLGELWSTQ 136
>gi|71027705|ref|XP_763496.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350449|gb|EAN31213.1| high mobility group protein, putative [Theileria parva]
Length = 94
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSE 82
AG+KS +A KDPN PKR S++ F +E R + +++P + VAAVGK G W S+ E
Sbjct: 9 AGKKSKRAKKDPNAPKRALSSYMFFAKEKRAELVRENPDLARDVAAVGKLVGAAWNSLDE 68
Query: 83 A 83
+
Sbjct: 69 S 69
>gi|145480005|ref|XP_001426025.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393097|emb|CAK58627.1| unnamed protein product [Paramecium tetraurelia]
Length = 223
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 14/73 (19%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKK--------DHPKNKSVAAV 69
N KP K K +DPN PKRP +AFF+F +++RE+ + D+ + +
Sbjct: 19 NDKPEK------KKERDPNAPKRPLTAFFLFSQKYREKVLERNPGIDLSDYQLEVKLIQI 72
Query: 70 GKAGGEKWKSMSE 82
+ G+KW+SMSE
Sbjct: 73 SQMAGQKWQSMSE 85
>gi|432102789|gb|ELK30264.1| High mobility group protein B1 [Myotis davidii]
Length = 245
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|148234528|ref|NP_001080836.1| high mobility group box 1 [Xenopus laevis]
gi|32450384|gb|AAH54148.1| Hmgb1-prov protein [Xenopus laevis]
Length = 211
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F EFR + K +HP ++ + K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHP-GSTIGDIAKKLGEMW 133
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + A K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMS 53
>gi|355754606|gb|EHH58507.1| hypothetical protein EGM_08375 [Macaca fascicularis]
Length = 263
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
++ K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 84 ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|355700906|gb|EHH28927.1| hypothetical protein EGK_09214, partial [Macaca mulatta]
Length = 263
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
++ K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 84 ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DPNKP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|290998589|ref|XP_002681863.1| hypothetical protein NAEGRDRAFT_82958 [Naegleria gruberi]
gi|284095488|gb|EFC49119.1| hypothetical protein NAEGRDRAFT_82958 [Naegleria gruberi]
Length = 219
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
AG+KS K KDPN PK+P + +F+F +E RE K + KS + V K GE W S+S+
Sbjct: 2 AGKKSTKK-KDPNAPKKPKTGYFLFCDEHREAAKAKTGEKKSASEVSKVLGEMWNSLSD 59
>gi|221219844|gb|ACM08583.1| High mobility group protein B2 [Salmo salar]
Length = 211
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
P K KSG+ KDPN PKRP SAFFVF EFR K++ P S+ K G W
Sbjct: 80 PPKGMAKSGRKKKDPNAPKRPPSAFFVFSAEFRPTVKQEFP-GCSIGQCAKKLGIMW 135
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKS 79
D NKPK SA+ F++ RE++K+ HP+ + A K E+W++
Sbjct: 5 DVNKPKGKTSAYAFFVQTCREEHKRKHPEQSVNFAEFSKQCSERWRA 51
>gi|62087576|dbj|BAD92235.1| high-mobility group box 1 variant [Homo sapiens]
Length = 176
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 89 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 135
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 7 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 55
>gi|343427904|emb|CBQ71429.1| related to NHP6B-nonhistone chromosomal protein [Sporisorium
reilianum SRZ2]
Length = 252
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KK +KA ++ K +DP+ PKRP SA+ +F E R++ +K HP +GK E WK
Sbjct: 154 KKISKAQKRKEKRLRDPDAPKRPPSAYLLFQNEVRQEIRKKHPGMPYSEVLGKV-SEAWK 212
Query: 79 SMSE 82
++++
Sbjct: 213 ALTD 216
>gi|45361297|ref|NP_989226.1| high mobility group box 1 [Xenopus (Silurana) tropicalis]
gi|38969943|gb|AAH63332.1| high-mobility group box 1 [Xenopus (Silurana) tropicalis]
gi|89267209|emb|CAJ81415.1| high-mobility group box 1 [Xenopus (Silurana) tropicalis]
gi|89272910|emb|CAJ82928.1| high-mobility group box 1 [Xenopus (Silurana) tropicalis]
Length = 211
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F EFR + K +HP ++ + K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHP-GSTIGDIAKKLGEMW 133
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + A K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMS 53
>gi|159162414|pdb|1HME|A Chain A, Structure Of The Hmg Box Motif In The B-Domain Of Hmg1
gi|159162415|pdb|1HMF|A Chain A, Structure Of The Hmg Box Motif In The B-Domain Of Hmg1
Length = 77
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + +
Sbjct: 2 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTA 49
>gi|221045048|dbj|BAH14201.1| unnamed protein product [Homo sapiens]
Length = 174
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|49258306|pdb|1J3C|A Chain A, Solution Structure Of The C-Terminal Domain Of The Hmgb2
Length = 79
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKRP SAFF+F E+R + K +HP S+ K GE W S
Sbjct: 4 KDPNAPKRPPSAFFLFCSEYRPKIKSEHP-GLSIGDTAKKLGEMWSEQS 51
>gi|28279681|gb|AAH45917.1| High-mobility group box 1 [Danio rerio]
gi|182891806|gb|AAI65307.1| Hmgb1 protein [Danio rerio]
Length = 205
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKRP SAFF+F EFR + K++ P S+ V K GE W +S
Sbjct: 89 KDPNAPKRPPSAFFIFCSEFRPKVKEETP-GLSIGDVAKRLGEMWNKIS 136
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
KDP KP+ S++ F++ RE++KK HP+ + + K E+WK+MS
Sbjct: 3 KDPTKPRGKMSSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMS 52
>gi|42476233|ref|NP_955849.2| high mobility group protein B1 [Danio rerio]
gi|37681827|gb|AAQ97791.1| high-mobility group box 1 [Danio rerio]
gi|45595607|gb|AAH67193.1| High-mobility group box 1 [Danio rerio]
Length = 205
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKRP SAFF+F EFR + K++ P S+ V K GE W +S
Sbjct: 89 KDPNAPKRPPSAFFIFCSEFRPKVKEETP-GLSIGDVAKRLGEMWNKIS 136
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
KDP KP+ S++ F++ RE++KK HP+ + + K E+WK+MS
Sbjct: 3 KDPTKPRGKMSSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMS 52
>gi|395520861|ref|XP_003764541.1| PREDICTED: high mobility group protein B1 [Sarcophilus harrisii]
Length = 230
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 101 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 147
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 19 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 67
>gi|148682766|gb|EDL14713.1| mCG116825 [Mus musculus]
Length = 162
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + +
Sbjct: 41 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTA 88
>gi|291399740|ref|XP_002716281.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
Length = 243
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
>gi|110287688|sp|Q4PBZ9.2|NHP6_USTMA RecName: Full=Non-histone chromosomal protein 6
Length = 99
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+++ KA KDP+ PKRP SA+ F ++ RE+ K +P+ VG+ G KWK MSEA
Sbjct: 16 KRTTKAKKDPDAPKRPLSAYMFFSQDQRERVKNANPE-AGFGEVGRLLGAKWKEMSEA 72
>gi|392337480|ref|XP_003753270.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392343959|ref|XP_003748829.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 215
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|351707228|gb|EHB10147.1| FACT complex subunit SSRP1 [Heterocephalus glaber]
Length = 709
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK M
Sbjct: 539 KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGM 588
>gi|346468357|gb|AEO34023.1| hypothetical protein [Amblyomma maculatum]
Length = 734
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K +D NKPKRP SA+F+++ E R++ KKD+P + S+ V K GE WK +++
Sbjct: 553 KKERDANKPKRPPSAYFLWLAENRDKIKKDNP-SFSITDVTKRAGELWKEVTD 604
>gi|392352276|ref|XP_003751165.1| PREDICTED: high mobility group protein B1 [Rattus norvegicus]
Length = 187
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|296479353|tpg|DAA21468.1| TPA: high-mobility group box 1-like [Bos taurus]
Length = 215
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++ K HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHTKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|164661201|ref|XP_001731723.1| hypothetical protein MGL_0991 [Malassezia globosa CBS 7966]
gi|159105624|gb|EDP44509.1| hypothetical protein MGL_0991 [Malassezia globosa CBS 7966]
Length = 97
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
G + KA KDP PKRP SA+ F +++R+ K SV VG+ G KWK MS+
Sbjct: 11 TGTRRTKAKKDPAAPKRPLSAYMFFSQDWRDASKPRTLTQDSVCDVGRLLGTKWKEMSD 69
>gi|410057418|ref|XP_003954213.1| PREDICTED: high mobility group protein B1-like [Pan troglodytes]
Length = 210
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP SV V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSVGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|312385332|gb|EFR29859.1| hypothetical protein AND_00900 [Anopheles darlingi]
Length = 730
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
D N PKRPA+AF ++M R+Q +KD+P S+ + K GGE WK +
Sbjct: 556 DANAPKRPATAFMLWMNATRDQIRKDNP-GLSITEIAKKGGELWKDL 601
>gi|334323271|ref|XP_003340370.1| PREDICTED: high mobility group protein B1-like [Monodelphis
domestica]
Length = 216
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|348541671|ref|XP_003458310.1| PREDICTED: high mobility group-T protein-like [Oreochromis
niloticus]
Length = 206
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
R + +N PA+ G+K K KDPN PKRP SAFF+F EFR + K + P S+ V
Sbjct: 69 RYEREMMNYVPARGGKKK-KKYKDPNAPKRPPSAFFIFCSEFRPKVKGESP-GLSIGDVA 126
Query: 71 KAGGEKWKSMS 81
K GE W S +
Sbjct: 127 KRLGEMWNSTA 137
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
KDP KP+ S++ F++ RE++KK HP+ + + A K E+WK+MS
Sbjct: 3 KDPTKPRGKMSSYAYFVQTCREEHKKKHPEASVNFAEFSKKCSERWKTMS 52
>gi|109469394|ref|XP_001076232.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392338825|ref|XP_003753645.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 214
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + V K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEVSKKCSERWKTMS 53
>gi|301757910|ref|XP_002914802.1| PREDICTED: high mobility group protein B1-like [Ailuropoda
melanoleuca]
Length = 215
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
>gi|148673911|gb|EDL05858.1| mCG144566 [Mus musculus]
Length = 240
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + +
Sbjct: 115 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTA 162
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 30 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 78
>gi|148709727|gb|EDL41673.1| mCG9102 [Mus musculus]
Length = 215
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|30584163|gb|AAP36330.1| Homo sapiens high-mobility group box 1 [synthetic construct]
gi|54697182|gb|AAV38963.1| high-mobility group box 1 [synthetic construct]
gi|54697184|gb|AAV38964.1| high-mobility group box 1 [synthetic construct]
gi|61367269|gb|AAX42974.1| high-mobility group box 1 [synthetic construct]
gi|61367275|gb|AAX42975.1| high-mobility group box 1 [synthetic construct]
gi|61371572|gb|AAX43692.1| high-mobility group box 1 [synthetic construct]
Length = 216
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|393219482|gb|EJD04969.1| HMG-box [Fomitiporia mediterranea MF3/22]
Length = 114
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 10 TRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAV 69
TR A KPA+ GK KDPN PKR SA+ F +++RE+ K ++P + V
Sbjct: 10 TRKAAAGAADKPAR-----GKGKKDPNAPKRALSAYMFFSQDWRERVKAENP-DAGFGEV 63
Query: 70 GKAGGEKWKSMSEA 83
GK G KWK M E+
Sbjct: 64 GKLLGAKWKEMDES 77
>gi|126327421|ref|XP_001367294.1| PREDICTED: high mobility group protein B1-like isoform 2
[Monodelphis domestica]
Length = 216
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|148673204|gb|EDL05151.1| mCG5336 [Mus musculus]
Length = 216
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|109098276|ref|XP_001102554.1| PREDICTED: high mobility group protein B1-like [Macaca mulatta]
Length = 215
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|432895946|ref|XP_004076239.1| PREDICTED: high mobility group-T protein-like [Oryzias latipes]
Length = 206
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKRP SAFF+F EFR + K + P ++ V K GE W S S
Sbjct: 89 KDPNAPKRPPSAFFIFCSEFRPKVKGESP-GLTIGDVAKRLGEMWNSTS 136
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
KDP KP+ S++ F++ RE++KK HP + + A K E+WK+MS
Sbjct: 3 KDPTKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMS 52
>gi|123368|sp|P07156.1|HMGB1_CRIGR RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|49483|emb|CAA68441.1| high mobility group protein [Cricetulus griseus]
Length = 180
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + +
Sbjct: 55 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTA 102
>gi|3342575|gb|AAC27652.1| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE +KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREGHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|83014391|ref|XP_918585.1| PREDICTED: high mobility group protein B1-like [Mus musculus]
Length = 213
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|190195542|gb|ACE73639.1| high-mobility group box 1 (predicted) [Sorex araneus]
Length = 215
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|417397281|gb|JAA45674.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 216
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 91 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 134
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|968888|dbj|BAA09924.1| HMG-1 [Homo sapiens]
Length = 215
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+R S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRRKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|431920962|gb|ELK18731.1| High mobility group protein B1 [Pteropus alecto]
Length = 215
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|55639639|ref|XP_509611.1| PREDICTED: high mobility group protein B1 isoform 15 [Pan
troglodytes]
gi|114649261|ref|XP_001140156.1| PREDICTED: high mobility group protein B1 isoform 3 [Pan
troglodytes]
gi|114649265|ref|XP_001140328.1| PREDICTED: high mobility group protein B1 isoform 5 [Pan
troglodytes]
gi|114649269|ref|XP_001140491.1| PREDICTED: high mobility group protein B1 isoform 7 [Pan
troglodytes]
gi|332841128|ref|XP_003314147.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|332841133|ref|XP_003314149.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|397513185|ref|XP_003826902.1| PREDICTED: high mobility group protein B1 isoform 1 [Pan paniscus]
gi|397513187|ref|XP_003826903.1| PREDICTED: high mobility group protein B1 isoform 2 [Pan paniscus]
gi|397513189|ref|XP_003826904.1| PREDICTED: high mobility group protein B1 isoform 3 [Pan paniscus]
gi|397513191|ref|XP_003826905.1| PREDICTED: high mobility group protein B1 isoform 4 [Pan paniscus]
gi|397513193|ref|XP_003826906.1| PREDICTED: high mobility group protein B1 isoform 5 [Pan paniscus]
gi|397513195|ref|XP_003826907.1| PREDICTED: high mobility group protein B1 isoform 6 [Pan paniscus]
gi|397513197|ref|XP_003826908.1| PREDICTED: high mobility group protein B1 isoform 7 [Pan paniscus]
gi|410047671|ref|XP_003952424.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047673|ref|XP_003952425.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047675|ref|XP_003952426.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047677|ref|XP_003952427.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047679|ref|XP_003952428.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047682|ref|XP_003952429.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047686|ref|XP_003952430.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047688|ref|XP_003952431.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
Length = 215
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|48145843|emb|CAG33144.1| HMGB1 [Homo sapiens]
Length = 215
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|620098|emb|CAA56631.1| high mobility group protein [Mus musculus]
gi|71681313|gb|AAI00313.1| High mobility group box 1 [Mus musculus]
Length = 215
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|4504425|ref|NP_002119.1| high mobility group protein B1 [Homo sapiens]
gi|50950133|ref|NP_001002937.1| high mobility group protein B1 [Canis lupus familiaris]
gi|126352708|ref|NP_001075304.1| high mobility group protein B1 [Equus caballus]
gi|281182655|ref|NP_001162380.1| high mobility group protein B1 [Papio anubis]
gi|284005385|ref|NP_001164752.1| high mobility group protein B1 [Oryctolagus cuniculus]
gi|388453289|ref|NP_001252735.1| high mobility group protein B1 [Macaca mulatta]
gi|291397530|ref|XP_002715999.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
gi|291399645|ref|XP_002716268.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
gi|296203653|ref|XP_002748994.1| PREDICTED: high mobility group protein B1 isoform 2 [Callithrix
jacchus]
gi|297714815|ref|XP_002833818.1| PREDICTED: high mobility group protein B1-like [Pongo abelii]
gi|332242218|ref|XP_003270282.1| PREDICTED: high mobility group protein B1-like isoform 1 [Nomascus
leucogenys]
gi|332242222|ref|XP_003270284.1| PREDICTED: high mobility group protein B1-like isoform 3 [Nomascus
leucogenys]
gi|332242226|ref|XP_003270286.1| PREDICTED: high mobility group protein B1-like isoform 5 [Nomascus
leucogenys]
gi|332242228|ref|XP_003270287.1| PREDICTED: high mobility group protein B1-like isoform 6 [Nomascus
leucogenys]
gi|332242230|ref|XP_003270288.1| PREDICTED: high mobility group protein B1-like isoform 7 [Nomascus
leucogenys]
gi|332242232|ref|XP_003270289.1| PREDICTED: high mobility group protein B1-like isoform 8 [Nomascus
leucogenys]
gi|344284506|ref|XP_003414007.1| PREDICTED: high mobility group protein B1-like [Loxodonta africana]
gi|348583405|ref|XP_003477463.1| PREDICTED: high mobility group protein B1-like [Cavia porcellus]
gi|426375079|ref|XP_004054375.1| PREDICTED: high mobility group protein B1-like isoform 1 [Gorilla
gorilla gorilla]
gi|426375081|ref|XP_004054376.1| PREDICTED: high mobility group protein B1-like isoform 2 [Gorilla
gorilla gorilla]
gi|426375083|ref|XP_004054377.1| PREDICTED: high mobility group protein B1-like isoform 3 [Gorilla
gorilla gorilla]
gi|426375085|ref|XP_004054378.1| PREDICTED: high mobility group protein B1-like isoform 4 [Gorilla
gorilla gorilla]
gi|426375087|ref|XP_004054379.1| PREDICTED: high mobility group protein B1-like isoform 5 [Gorilla
gorilla gorilla]
gi|426375089|ref|XP_004054380.1| PREDICTED: high mobility group protein B1-like isoform 6 [Gorilla
gorilla gorilla]
gi|426375091|ref|XP_004054381.1| PREDICTED: high mobility group protein B1-like isoform 7 [Gorilla
gorilla gorilla]
gi|426375093|ref|XP_004054382.1| PREDICTED: high mobility group protein B1-like isoform 8 [Gorilla
gorilla gorilla]
gi|441624073|ref|XP_004088962.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624077|ref|XP_004088963.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624084|ref|XP_004088964.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624090|ref|XP_004088965.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624094|ref|XP_004088966.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|123369|sp|P09429.3|HMGB1_HUMAN RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|61213476|sp|Q6YKA4.3|HMGB1_CANFA RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|75076928|sp|Q4R844.3|HMGB1_MACFA RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|119370722|sp|Q08IE6.3|HMGB1_HORSE RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|189028296|sp|B0CM99.1|HMGB1_CALJA RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|189028297|sp|B1MTB0.1|HMGB1_CALMO RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|189028298|sp|A9RA84.1|HMGB1_PAPAN RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|32327|emb|CAA31110.1| unnamed protein product [Homo sapiens]
gi|1435197|gb|AAB08987.1| non-histone chromatin protein HMG1 [Homo sapiens]
gi|13097234|gb|AAH03378.1| High-mobility group box 1 [Homo sapiens]
gi|21410205|gb|AAH30981.1| High-mobility group box 1 [Homo sapiens]
gi|30582719|gb|AAP35586.1| high-mobility group box 1 [Homo sapiens]
gi|37380997|gb|AAQ91389.1| high mobility group protein 1 [Homo sapiens]
gi|37548602|gb|AAN11296.1| high mobility group protein B1 [Canis lupus familiaris]
gi|37722533|gb|AAN11319.1| high mobility group B1 protein [Canis lupus familiaris]
gi|44890726|gb|AAH66889.1| High-mobility group box 1 [Homo sapiens]
gi|45709178|gb|AAH67732.1| High-mobility group box 1 [Homo sapiens]
gi|51476884|emb|CAH18408.1| hypothetical protein [Homo sapiens]
gi|54697178|gb|AAV38961.1| high-mobility group box 1 [Homo sapiens]
gi|60654989|gb|AAX32058.1| high mobility group box 1 [synthetic construct]
gi|61357252|gb|AAX41359.1| high-mobility group box 1 [synthetic construct]
gi|67968740|dbj|BAE00728.1| unnamed protein product [Macaca fascicularis]
gi|115354285|dbj|BAF33339.1| high-mobility group box 1 [Equus caballus]
gi|119628862|gb|EAX08457.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628864|gb|EAX08459.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628865|gb|EAX08460.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628866|gb|EAX08461.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628867|gb|EAX08462.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|121073803|gb|ABM47301.1| high mobility group box 1 protein [Homo sapiens]
gi|152112978|gb|ABS29271.1| high-mobility group box 1 [Homo sapiens]
gi|158256420|dbj|BAF84183.1| unnamed protein product [Homo sapiens]
gi|162415900|gb|ABX89266.1| high-mobility group box 1 (predicted) [Papio anubis]
gi|165934066|gb|ABY74560.1| high-mobility group box 1 (predicted) [Callithrix jacchus]
gi|169402702|gb|ACA53510.1| high-mobility group box 1 (predicted) [Callicebus moloch]
gi|183396417|gb|ACC62098.1| high-mobility group box 1 (predicted) [Rhinolophus ferrumequinum]
gi|193783763|dbj|BAG53745.1| unnamed protein product [Homo sapiens]
gi|196050399|gb|ACG64310.1| high-mobility group box 1 (predicted) [Otolemur garnettii]
gi|216397586|gb|ACJ72830.1| high-mobility group box 1 (predicted) [Oryctolagus cuniculus]
gi|261858262|dbj|BAI45653.1| high-mobility group box 1 [synthetic construct]
gi|335775462|gb|AEH58580.1| high mobility group protein B1-like protein [Equus caballus]
gi|351700460|gb|EHB03379.1| High mobility group protein B1 [Heterocephalus glaber]
gi|387542840|gb|AFJ72047.1| high mobility group protein B1 [Macaca mulatta]
Length = 215
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|410932269|ref|XP_003979516.1| PREDICTED: high mobility group-T protein-like [Takifugu rubripes]
gi|410933007|ref|XP_003979884.1| PREDICTED: high mobility group-T protein-like [Takifugu rubripes]
Length = 209
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
DPN PKRP SAFF+F EFR + K +HP ++ V K GE W
Sbjct: 95 DPNAPKRPPSAFFIFCSEFRPKVKGEHP-GLTIGEVAKKLGELW 137
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
GR SG+ A KP+ S++ F++ RE++KK HP + + + + E+WK+MS
Sbjct: 2 GRDSGREA---GKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSRKCSERWKTMS 56
>gi|402854944|ref|XP_003892110.1| PREDICTED: high mobility group protein B1-like isoform 1 [Papio
anubis]
gi|402854946|ref|XP_003892111.1| PREDICTED: high mobility group protein B1-like isoform 2 [Papio
anubis]
Length = 214
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|397495503|ref|XP_003818592.1| PREDICTED: high mobility group protein B1-like [Pan paniscus]
Length = 209
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|351698285|gb|EHB01204.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 215
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTA 137
>gi|348551709|ref|XP_003461672.1| PREDICTED: high mobility group protein B1-like [Cavia porcellus]
Length = 214
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|354468511|ref|XP_003496696.1| PREDICTED: high mobility group protein B1-like [Cricetulus griseus]
gi|344237248|gb|EGV93351.1| High mobility group protein B1 [Cricetulus griseus]
Length = 220
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTA 137
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|109510563|ref|XP_001059688.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392343404|ref|XP_003754879.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 213
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|41386729|ref|NP_788785.1| high mobility group protein B1 [Bos taurus]
gi|410947173|ref|XP_003980327.1| PREDICTED: high mobility group protein B1 [Felis catus]
gi|123367|sp|P10103.3|HMGB1_BOVIN RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|417|emb|CAA31284.1| unnamed protein product [Bos taurus]
gi|73586656|gb|AAI02930.1| HMGB1 protein [Bos taurus]
gi|146231904|gb|ABQ13027.1| high-mobility group box 1 [Bos taurus]
gi|296481787|tpg|DAA23902.1| TPA: high mobility group protein B1 [Bos taurus]
Length = 215
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|6754208|ref|NP_034569.1| high mobility group protein B1 [Mus musculus]
gi|6981026|ref|NP_037095.1| high mobility group protein B1 [Rattus norvegicus]
gi|407262920|ref|XP_003945388.1| PREDICTED: high mobility group protein B1-like [Mus musculus]
gi|52783618|sp|P63159.2|HMGB1_RAT RecName: Full=High mobility group protein B1; AltName:
Full=Amphoterin; AltName: Full=Heparin-binding protein
p30; AltName: Full=High mobility group protein 1;
Short=HMG-1
gi|52783747|sp|P63158.2|HMGB1_MOUSE RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|9082303|gb|AAF82799.1|AF275734_1 amphoterin [Rattus norvegicus]
gi|53382|emb|CAA78042.1| non-histone chromosomal high-mobility group 1 protein [Mus
musculus]
gi|56365|emb|CAA68526.1| unnamed protein product [Rattus norvegicus]
gi|202885|gb|AAA40729.1| Amphoterin [Rattus norvegicus]
gi|208488|gb|AAA73006.1| high mobility group 1 protein [synthetic construct]
gi|437102|gb|AAA20508.1| HMG-1 [Mus musculus]
gi|13879238|gb|AAH06586.1| High mobility group box 1 [Mus musculus]
gi|14250281|gb|AAH08565.1| High mobility group box 1 [Mus musculus]
gi|26332344|dbj|BAC29902.1| unnamed protein product [Mus musculus]
gi|26351305|dbj|BAC39289.1| unnamed protein product [Mus musculus]
gi|38512146|gb|AAH61779.1| High mobility group box 1 [Rattus norvegicus]
gi|51859468|gb|AAH81839.1| High mobility group box 1 [Rattus norvegicus]
gi|52789475|gb|AAH83067.1| High mobility group box 1 [Mus musculus]
gi|54648288|gb|AAH85090.1| High mobility group box 1 [Mus musculus]
gi|56788766|gb|AAH88402.1| High mobility group box 1 [Rattus norvegicus]
gi|61403558|gb|AAH91741.1| High mobility group box 1 [Mus musculus]
gi|62739258|gb|AAH94030.1| High mobility group box 1 [Mus musculus]
gi|74186113|dbj|BAE34226.1| unnamed protein product [Mus musculus]
gi|84040262|gb|AAI10668.1| Hmgb1 protein [Mus musculus]
gi|84105496|gb|AAI11469.1| High mobility group box 1 [Mus musculus]
gi|149034811|gb|EDL89531.1| rCG42800, isoform CRA_a [Rattus norvegicus]
gi|149034812|gb|EDL89532.1| rCG42800, isoform CRA_a [Rattus norvegicus]
gi|149034813|gb|EDL89533.1| rCG42800, isoform CRA_a [Rattus norvegicus]
gi|195539712|gb|AAI68143.1| High mobility group box 1 [Rattus norvegicus]
Length = 215
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|58268918|ref|XP_571615.1| nonhistone protein 6 [Cryptococcus neoformans var. neoformans
JEC21]
gi|134112618|ref|XP_774852.1| hypothetical protein CNBF0170 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818300|sp|P0CO25.1|NHP6_CRYNB RecName: Full=Non-histone chromosomal protein 6
gi|338818301|sp|P0CO24.1|NHP6_CRYNJ RecName: Full=Non-histone chromosomal protein 6
gi|50257500|gb|EAL20205.1| hypothetical protein CNBF0170 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227850|gb|AAW44308.1| nonhistone protein 6, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 116
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KDPNKPKR SA+ F++++RE+ K ++P+ + VGK G KW+ M+E
Sbjct: 23 KDPNKPKRALSAYMFFVQDYRERIKTENPE-ATFGDVGKLLGIKWREMNE 71
>gi|380792505|gb|AFE68128.1| high mobility group protein B1, partial [Macaca mulatta]
Length = 183
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|56788496|gb|AAW29969.1| unknown [Sus scrofa]
gi|56792880|gb|AAW30632.1| unknown [Sus scrofa]
Length = 193
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|444707034|gb|ELW48343.1| High mobility group protein B1 [Tupaia chinensis]
Length = 203
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 78 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 121
>gi|74181373|dbj|BAE29962.1| unnamed protein product [Mus musculus]
Length = 215
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++K+ HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKRKHPDASVNFSEFSKKCSERWKTMS 53
>gi|380793129|gb|AFE68440.1| high mobility group protein B1, partial [Macaca mulatta]
Length = 195
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|380793127|gb|AFE68439.1| high mobility group protein B1, partial [Macaca mulatta]
Length = 195
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|149635755|ref|XP_001508702.1| PREDICTED: high mobility group protein B1-like [Ornithorhynchus
anatinus]
Length = 215
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDAAVNFSEFSKKCSERWKTMS 53
>gi|149030113|gb|EDL85190.1| rCG63106 [Rattus norvegicus]
Length = 201
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 78 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 121
>gi|119628863|gb|EAX08458.1| high-mobility group box 1, isoform CRA_b [Homo sapiens]
Length = 206
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|26341410|dbj|BAC34367.1| unnamed protein product [Mus musculus]
Length = 178
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|390463605|ref|XP_003733066.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 214
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|149691739|ref|XP_001488130.1| PREDICTED: high mobility group protein B1-like [Equus caballus]
Length = 212
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
>gi|5764678|gb|AAC27650.2| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
>gi|3342573|gb|AAC27651.1| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + + E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSERCSERWKTMS 53
>gi|326437020|gb|EGD82590.1| hypothetical protein PTSG_03243 [Salpingoeca sp. ATCC 50818]
Length = 210
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
G + K KDPN PK+P SA+FVF E R+ + +P+++ V+ K GE+W+ M+E
Sbjct: 125 GGRRRKKKKDPNAPKKPKSAYFVFAETRRDALRAQYPEDR-VSDTAKRTGEEWRGMTE 181
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPNKP+ + + F +E R + HP N SV V K G +W+ +++
Sbjct: 45 DPNKPRGALTPYMCFNKEVRPAIMQQHP-NASVTEVAKLIGAQWRQLTD 92
>gi|26350077|dbj|BAC38678.1| unnamed protein product [Mus musculus]
Length = 181
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|51592117|ref|NP_001004034.1| high mobility group protein B1 [Sus scrofa]
gi|123371|sp|P12682.3|HMGB1_PIG RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|164490|gb|AAA31050.1| non-histone protein HMG1 [Sus scrofa]
Length = 215
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|5764680|gb|AAC27653.2| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEAVSG 86
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS G
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAEEKG 58
>gi|146218567|gb|AAI40014.1| High-mobility group box 1 [synthetic construct]
gi|146218571|gb|AAI40019.1| High-mobility group box 1 [synthetic construct]
gi|146327050|gb|AAI41845.1| High-mobility group box 1 [Homo sapiens]
Length = 215
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|112491006|pdb|2GZK|A Chain A, Structure Of A Complex Of Tandem Hmg Boxes And Dna
Length = 159
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
++ K KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 78 ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 127
>gi|332260744|ref|XP_003279440.1| PREDICTED: uncharacterized protein LOC100604184 [Nomascus
leucogenys]
Length = 414
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAG---GEKWKSMSEA 83
GK KDPN P+RP S FF+F EFR + K +P + G GE WK+++++
Sbjct: 84 GKKKKDPNAPQRPLSGFFLFCSEFRPKIKSTNPGKTGIFGFGDVAKKLGEMWKNLNDS 141
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSE 82
DP KPK SA+ F++ RE++KK +PK + A K E+WK++SE
Sbjct: 5 DPTKPKGKMSAYAFFVQTCREEHKKKNPKVPVNFAEFSKKCSERWKTISE 54
>gi|402865885|ref|XP_003897133.1| PREDICTED: high mobility group protein B1-like [Papio anubis]
Length = 221
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 96 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 139
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|157820087|ref|NP_001102843.1| high mobility group box 1 like [Rattus norvegicus]
gi|149043247|gb|EDL96779.1| rCG50935 [Rattus norvegicus]
Length = 214
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|281350894|gb|EFB26478.1| hypothetical protein PANDA_002732 [Ailuropoda melanoleuca]
Length = 157
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
>gi|444729709|gb|ELW70116.1| High mobility group protein B1 [Tupaia chinensis]
Length = 215
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|148680486|gb|EDL12433.1| mCG1219 [Mus musculus]
Length = 215
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTA 137
>gi|366988547|ref|XP_003674040.1| hypothetical protein NCAS_0A11010 [Naumovozyma castellii CBS
4309]
gi|342299903|emb|CCC67659.1| hypothetical protein NCAS_0A11010 [Naumovozyma castellii CBS
4309]
Length = 101
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P +A R++ + KDPN PKR SA+ F E R+ K ++P N + VGK GEKWK++
Sbjct: 3 PKEAKRRTQRRKKDPNAPKRGLSAYMFFANENRDIVKAENP-NITFGQVGKVLGEKWKAL 61
Query: 81 S 81
+
Sbjct: 62 T 62
>gi|332863449|ref|XP_001169802.2| PREDICTED: high mobility group protein B1-like, partial [Pan
troglodytes]
Length = 174
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|444513275|gb|ELV10301.1| High mobility group protein B1 [Tupaia chinensis]
Length = 161
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP AFF+F E+R Q K +HP S+ V K GE W
Sbjct: 89 KDPNAPKRPLLAFFLFCSEYRPQIKGEHP-GLSIGDVAKKLGEMW 132
>gi|426236471|ref|XP_004012192.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 213
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGNVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|328856362|gb|EGG05484.1| hypothetical protein MELLADRAFT_31192 [Melampsora larici-populina
98AG31]
Length = 82
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K KDPN PKRP SA+ F +++RE+ K ++P+ S +G+ G KWKS+ E
Sbjct: 5 KREKDPNAPKRPLSAYMFFSQDWRERIKTENPEV-SFGEIGRLLGLKWKSLGE 56
>gi|356510782|ref|XP_003524113.1| PREDICTED: high mobility group B protein 14-like [Glycine max]
Length = 165
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 25 GRKSGKAAK--DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
RK KA + D K K+P S FF F+E+FR++++ +P KS +GKA +KWK+M+
Sbjct: 52 SRKKLKAKQKFDAMKQKKPLSGFFYFLEDFRKEFQVRNPDVKSKRDIGKASAKKWKTMT 110
>gi|170784871|ref|NP_001116308.1| wu:fk52f12 [Danio rerio]
Length = 213
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K G+K KDPN PKRP S FF+F E R Q K +P + + V K GE W +
Sbjct: 80 PGKRGKK-----KDPNAPKRPPSGFFLFCSEHRPQIKAQYP-SLGIGDVAKKLGEMWNGL 133
Query: 81 SEA 83
++A
Sbjct: 134 TDA 136
>gi|600761|gb|AAA57042.1| high mobility group 1 protein [Mus musculus]
Length = 215
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|255544145|ref|XP_002513135.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223548146|gb|EEF49638.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 196
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 32/42 (76%)
Query: 41 PASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
P +AFF+F++EFR+ +K+ +P +K V V K GEKWK+M++
Sbjct: 103 PPTAFFIFLDEFRKTFKEANPDSKDVKRVAKEAGEKWKAMTD 144
>gi|38047781|gb|AAR09793.1| similar to Drosophila melanogaster HmgZ, partial [Drosophila
yakuba]
Length = 104
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
++PKRP SA+ +++ E REQ KKD+P +K V + K GGE W+ +
Sbjct: 4 DRPKRPLSAYMLWLNETREQIKKDNPGSK-VTDIAKRGGELWRGL 47
>gi|54020668|ref|NP_112383.1| FACT complex subunit SSRP1 [Rattus norvegicus]
gi|83305804|sp|Q04931.2|SSRP1_RAT RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; AltName: Full=T160
gi|53734496|gb|AAH83588.1| Structure specific recognition protein 1 [Rattus norvegicus]
gi|149022436|gb|EDL79330.1| structure specific recognition protein 1, isoform CRA_a [Rattus
norvegicus]
gi|149022437|gb|EDL79331.1| structure specific recognition protein 1, isoform CRA_a [Rattus
norvegicus]
Length = 709
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS
Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMS 589
>gi|347921933|ref|NP_990626.2| high mobility group protein B3 [Gallus gallus]
Length = 217
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKRP SAFF+F EFR + K +P S+ V K GE W ++S+
Sbjct: 104 DPNAPKRPPSAFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSD 151
>gi|24657271|ref|NP_726106.1| HMG protein Z, isoform A [Drosophila melanogaster]
gi|24657274|ref|NP_726107.1| HMG protein Z, isoform B [Drosophila melanogaster]
gi|194882002|ref|XP_001975102.1| GG20749 [Drosophila erecta]
gi|195346531|ref|XP_002039811.1| GM15692 [Drosophila sechellia]
gi|195486382|ref|XP_002091485.1| HmgZ [Drosophila yakuba]
gi|195585528|ref|XP_002082533.1| GD25171 [Drosophila simulans]
gi|729741|sp|Q06943.1|HMGZ_DROME RecName: Full=High mobility group protein Z; Short=HMG-Z
gi|296945|emb|CAA50469.1| Hmg-Z protein [Drosophila melanogaster]
gi|7291329|gb|AAF46758.1| HMG protein Z, isoform A [Drosophila melanogaster]
gi|21064429|gb|AAM29444.1| RE28596p [Drosophila melanogaster]
gi|21645314|gb|AAM70934.1| HMG protein Z, isoform B [Drosophila melanogaster]
gi|190658289|gb|EDV55502.1| GG20749 [Drosophila erecta]
gi|194135160|gb|EDW56676.1| GM15692 [Drosophila sechellia]
gi|194177586|gb|EDW91197.1| HmgZ [Drosophila yakuba]
gi|194194542|gb|EDX08118.1| GD25171 [Drosophila simulans]
gi|220948296|gb|ACL86691.1| HmgZ-PA [synthetic construct]
Length = 111
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
++PKRP SA+ +++ E REQ KKD+P +K V + K GGE W+ + +
Sbjct: 4 DRPKRPLSAYMLWLNETREQIKKDNPGSK-VTDIAKRGGELWRGLKD 49
>gi|413938186|gb|AFW72737.1| hypothetical protein ZEAMMB73_544458 [Zea mays]
Length = 96
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 49 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
M EFR++Y+ HP NKSVA V KA GEKW++MS+
Sbjct: 1 MSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSD 34
>gi|167744990|pdb|2YRQ|A Chain A, Solution Structure Of The Tandem Hmg Box Domain From Human
High Mobility Group Protein B1
Length = 173
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 97 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 140
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 12 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 60
>gi|444732714|gb|ELW72989.1| Enkurin [Tupaia chinensis]
Length = 362
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
++ K +KDPN PKRP SAFF+F E+R + K +HP S+ K GE W
Sbjct: 84 ETKKKSKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDAAKKLGEMW 133
>gi|148668459|gb|EDL00778.1| mCG116117 [Mus musculus]
Length = 244
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
R++ K KDPN PKRP SAFF+F +R + K +HP S+ V K GE W
Sbjct: 83 RETKKKFKDPNAPKRPPSAFFLFCSGYRPKIKGEHP-GLSIGDVAKKRGEMW 133
>gi|327268628|ref|XP_003219098.1| PREDICTED: high mobility group protein B2-like [Anolis
carolinensis]
Length = 209
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
K KDPN PKRP SAFF+F E R + K DHP S+ K GE W
Sbjct: 85 KKRKDPNAPKRPPSAFFLFCSEHRPKIKSDHP-GLSIGDTAKKLGEMW 131
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
DPNKP+ S++ F++ RE++KK HP + + A K E+W++MS
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSKKCSERWRTMS 53
>gi|229367676|gb|ACQ58818.1| High mobility group protein B1 [Anoplopoma fimbria]
Length = 197
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
N P K +K K KDPN PKRP SAFF+F +FR + K +HP ++ K GE W
Sbjct: 76 NYDPPKGQKK--KRFKDPNAPKRPPSAFFLFCGDFRPKVKSEHP-GLTIGDTAKKLGEMW 132
Query: 78 KSMS 81
S S
Sbjct: 133 NSSS 136
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSE 82
KDP KPK S++ F++ RE++KK HP+ + + A K E+WK+MS+
Sbjct: 3 KDPRKPKGKMSSYAYFVQTCREEHKKKHPEASVNFAEFSKKCSERWKTMSQ 53
>gi|444722008|gb|ELW62714.1| High mobility group protein B1 [Tupaia chinensis]
Length = 224
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFFFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
>gi|119187239|ref|XP_001244226.1| hypothetical protein CIMG_03667 [Coccidioides immitis RS]
gi|303317166|ref|XP_003068585.1| Nonhistone chromosomal protein 6B, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240108266|gb|EER26440.1| Nonhistone chromosomal protein 6B, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320038503|gb|EFW20438.1| nucleosome binding protein Nhp6a [Coccidioides posadasii str.
Silveira]
gi|392870942|gb|EAS32789.2| non-histone chromosomal protein 6 [Coccidioides immitis RS]
Length = 102
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
GR++ K KDPN PKR SA+ F E RE ++++P S VGK GE+WK++S+
Sbjct: 12 GRRAEKKKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKALSD 68
>gi|27881711|gb|AAH44715.1| MGC52578 protein [Xenopus laevis]
Length = 212
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
G GK KDPN PKRP SAFF+F E R Q K + P S+ K GE W
Sbjct: 83 GETKGKRKKDPNAPKRPPSAFFIFCSEHRPQIKSETP-GLSIGDTAKKLGELW 134
Score = 40.8 bits (94), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
DPNKP+ S++ F++ RE++KK HP + + K E+WKSMS
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDTSVNFSEFSKKCSERWKSMS 53
>gi|413949487|gb|AFW82136.1| hypothetical protein ZEAMMB73_682960 [Zea mays]
Length = 488
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAV 69
KPK P S FFVFM FR++Y+ HP NKSVA +
Sbjct: 228 KPKHPPSTFFVFMSGFRQEYQVQHPGNKSVATM 260
>gi|444706303|gb|ELW47646.1| Glycine/arginine-rich protein 1 [Tupaia chinensis]
Length = 485
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKRP SAFF+F E+R + K+HP S+ + K GE W S +
Sbjct: 35 KDPNAPKRPPSAFFLFCSEYRPKI-KEHP-GLSIGDIAKKLGELWTSTA 81
>gi|321259756|ref|XP_003194598.1| nonhistone protein 6 [Cryptococcus gattii WM276]
gi|317461070|gb|ADV22811.1| Nonhistone protein 6, putative [Cryptococcus gattii WM276]
Length = 110
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KDPNKPKR SA+ F++++RE+ K ++P+ + VGK G KW+ M+E
Sbjct: 23 KDPNKPKRALSAYMFFVQDYRERIKAENPE-ATFGDVGKLLGIKWREMNE 71
>gi|729728|sp|P40618.2|HMGB3_CHICK RecName: Full=High mobility group protein B3; AltName: Full=High
mobility group protein 2a; Short=HMG-2a; AltName:
Full=High mobility group protein 4; Short=HMG-4
gi|63494|emb|CAA45065.1| HMG2a [Gallus gallus]
Length = 202
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKRP SAFF+F EFR + K +P S+ V K GE W ++S+
Sbjct: 89 DPNAPKRPPSAFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSD 136
>gi|326918606|ref|XP_003205579.1| PREDICTED: high mobility group protein B2-like [Meleagris
gallopavo]
Length = 246
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DPN PKRP SAFF+F E R + K DHP S+ K GE W S
Sbjct: 129 DPNAPKRPPSAFFLFCSEHRPKIKNDHP-GLSIGDTAKKLGEMWSEQS 175
>gi|229365968|gb|ACQ57964.1| High mobility group protein B1 [Anoplopoma fimbria]
Length = 197
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
N P K +K K KDPN PKRP SAFF+F +FR + K +HP ++ K GE W
Sbjct: 76 NYDPPKGQKK--KRFKDPNAPKRPPSAFFLFCGDFRPKVKSEHP-GLTIGDTAKKLGEMW 132
Query: 78 KSMS 81
S S
Sbjct: 133 NSSS 136
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEAVSG 86
KDP KPK S++ F++ RE++KK HP+ + + A K E+WK+MS+ G
Sbjct: 3 KDPRKPKGKMSSYAYFVQTCREEHKKKHPEASVNFAEFSKKCSERWKTMSQKEKG 57
>gi|405121060|gb|AFR95829.1| nonhistone protein 6 [Cryptococcus neoformans var. grubii H99]
Length = 116
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KDPNKPKR SA+ F++++RE+ K ++P+ + VGK G KW+ M+E
Sbjct: 23 KDPNKPKRALSAYMFFVQDYRERIKAENPE-ATFGDVGKLLGIKWREMNE 71
>gi|203465|gb|AAA40927.1| HMG box (bp. 1168..1428), partial [Rattus norvegicus]
Length = 561
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS
Sbjct: 395 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMS 441
>gi|355563197|gb|EHH19759.1| hypothetical protein EGK_02478, partial [Macaca mulatta]
Length = 121
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+ + DPN PKRP S FF+F EF + K +P S+ V K GE WK++
Sbjct: 18 PAKGGKNN-----DPNAPKRPLSGFFLFCSEFHPKMKSTNP-GISIGDVAKKLGEMWKNL 71
Query: 81 SEA 83
+++
Sbjct: 72 NDS 74
>gi|148703464|gb|EDL35411.1| mCG50005 [Mus musculus]
Length = 206
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DPN PKRP SAFF+F E+R + K +HP S+ V K GE W + +
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTA 137
>gi|148223673|ref|NP_001079576.1| HMG-X protein [Xenopus laevis]
gi|639691|dbj|BAA06440.1| HMG-X protein [Xenopus laevis]
Length = 212
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
G GK KDPN PKRP SAFF+F E R Q K + P S+ K GE W
Sbjct: 83 GETKGKRKKDPNAPKRPPSAFFIFCSEHRPQIKSETP-GLSIGDTAKKLGELW 134
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
DPNKP+ S++ F++ RE++KK HP + + K E+WKSMS
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDTSVNFSDFSKKCSERWKSMS 53
>gi|167384542|ref|XP_001736998.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165900416|gb|EDR26737.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 112
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
PN+PKRP + +F+++ E R K++HP K V + K E+WK++ E
Sbjct: 23 PNRPKRPQTPYFLYLHEHRASIKEEHPDAK-VTEIAKIASEQWKALGE 69
>gi|71024155|ref|XP_762307.1| hypothetical protein UM06160.1 [Ustilago maydis 521]
gi|46101812|gb|EAK87045.1| hypothetical protein UM06160.1 [Ustilago maydis 521]
Length = 534
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KK +K ++ K +DP+ PKRP SA+ +F E R++ +K HP +GK E WK
Sbjct: 278 KKMSKLQKRKEKRLRDPDAPKRPPSAYLLFQNEVRQEIRKKHPGMPYSEVLGKV-SEAWK 336
Query: 79 SMSE 82
++++
Sbjct: 337 ALTD 340
>gi|444732719|gb|ELW72994.1| High mobility group protein B1 [Tupaia chinensis]
Length = 289
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
DPN PKRP SAFF+F E+R + K +HP SV V K GE W
Sbjct: 91 DPNSPKRPPSAFFLFCSEYRPKIKGEHP-GLSVGDVTKKLGEMW 133
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|37779034|gb|AAP20177.1| high mobility group protein [Pagrus major]
Length = 200
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
N P K +K K KDPN PKRP SAFF+F +FR + K D+P S+ K GE W
Sbjct: 76 NYIPPKGHKK--KRFKDPNAPKRPPSAFFLFCADFRPKVKGDYP-GLSIGDTAKKLGEMW 132
Query: 78 KSMS 81
S S
Sbjct: 133 NSSS 136
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
KDP KP+ S++ F++ RE++KK HP+ + + A K E+WK+MS
Sbjct: 3 KDPKKPRGKMSSYAYFVQTCREEHKKKHPEASVNFAEFSKRCSERWKTMS 52
>gi|148238271|ref|NP_001081794.1| high mobility group protein-1 [Xenopus laevis]
gi|709959|gb|AAC59859.1| high mobility group protein-1 [Xenopus laevis]
Length = 210
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F +FR + K +HP ++ + K GE W
Sbjct: 89 KDPNAPKRPPSAFFLFCSDFRPKIKGEHP-GSTIGDIAKKLGEMW 132
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + A K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMS 53
>gi|49115548|gb|AAH73449.1| HMG-1 protein [Xenopus laevis]
Length = 210
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F +FR + K +HP ++ + K GE W
Sbjct: 89 KDPNAPKRPPSAFFLFCSDFRPKIKGEHP-GSTIGDIAKKLGEMW 132
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + A K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMS 53
>gi|401885246|gb|EJT49369.1| nonhistone protein 6 [Trichosporon asahii var. asahii CBS 2479]
gi|406694772|gb|EKC98094.1| nonhistone protein 6 [Trichosporon asahii var. asahii CBS 8904]
Length = 108
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 7/64 (10%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
+KK AK G+K DPNKPKR SA+ F++++RE+ K ++P + +VG+ G KW
Sbjct: 9 DKKVAKRGKK------DPNKPKRALSAYMFFVQDWRERIKSENP-DADFGSVGRLLGAKW 61
Query: 78 KSMS 81
+ MS
Sbjct: 62 QEMS 65
>gi|225195617|gb|ACN82086.1| high-mobility group box 1 [Carassius auratus]
gi|225195619|gb|ACN82087.1| high-mobility group box 1 [Megalobrama amblycephala]
gi|225195623|gb|ACN82089.1| high-mobility group box 1 [Carassius auratus x Megalobrama
amblycephala]
Length = 193
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKRP SAFF+F EFR + K++ P S+ V K GE W S
Sbjct: 78 KDPNAPKRPPSAFFIFCSEFRPKVKEETP-GLSIGDVAKKLGEMWNKTS 125
>gi|167536391|ref|XP_001749867.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771582|gb|EDQ85246.1| predicted protein [Monosiga brevicollis MX1]
Length = 197
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 17 VNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEK 76
V++ P + + +A KDPNKPK SA+ F ++ R Q+ KD+P +K + V K G
Sbjct: 17 VHEAPRQKRPRQKRAKKDPNKPKNAQSAYMFFSQKVRPQFSKDNP-DKKMTDVSKLIGAA 75
Query: 77 WKSMSEA 83
W+ MS+A
Sbjct: 76 WREMSDA 82
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P + K GK KDP+ PK+P +A+F++ + R + + +N +VA + K G +WK +
Sbjct: 109 PTRELGKRGKRRKDPDAPKKPLTAYFLYAADRRAALRAQN-RNATVADIAKIIGAEWKDL 167
Query: 81 SEAV 84
S+AV
Sbjct: 168 SDAV 171
>gi|148910368|gb|ABR18262.1| unknown [Picea sitchensis]
Length = 122
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%)
Query: 6 SKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKK 58
S+ R ++ + K P K K KDPN+PK+P AFFVFMEEFR++ ++
Sbjct: 74 SRKQPRTEEVEIQKAP-----KCAKRPKDPNRPKKPQPAFFVFMEEFRKKIQR 121
>gi|431920081|gb|ELK18129.1| High mobility group protein B3 [Pteropus alecto]
Length = 255
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S++
Sbjct: 141 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDS 189
>gi|225195621|gb|ACN82088.1| high-mobility group box 1 [Carassius auratus x Megalobrama
amblycephala]
Length = 193
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKRP SAFF+F EFR + K++ P S+ V K GE W S
Sbjct: 78 KDPNAPKRPPSAFFIFCAEFRPKVKEETP-GLSIGDVAKKLGEMWNKTS 125
>gi|351715817|gb|EHB18736.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 165
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
++ K KDPN PKRP SAFF+F E+ Q K +HP S+ V K GE W
Sbjct: 84 ETEKKFKDPNAPKRPPSAFFLFYSEYCPQIKGEHP-GLSIGDVAKKLGEMW 133
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S + F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSLYAFFVQTCREEHKKKHPDASINFSEFSKKCSERWKTMS 53
>gi|296418046|ref|XP_002838655.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634611|emb|CAZ82846.1| unnamed protein product [Tuber melanosporum]
Length = 103
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
+PA+A +K KDPN PKR SA+ F E RE + D+P + VGK GE+WK+
Sbjct: 9 QPAQAAQKK----KDPNAPKRGLSAYMFFANEQRENVRNDNP-GIAFGQVGKVLGERWKA 63
Query: 80 MSE 82
+SE
Sbjct: 64 LSE 66
>gi|407262070|ref|XP_003945989.1| PREDICTED: high mobility group protein B1-like [Mus musculus]
Length = 213
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
R++ K KDPN PKRP SAFF+F +R + K +HP S+ V K GE W
Sbjct: 83 RETKKKFKDPNAPKRPPSAFFLFCSGYRPKIKGEHP-GLSIGDVAKKRGEMW 133
>gi|296470699|tpg|DAA12814.1| TPA: high mobility group box 3-like [Bos taurus]
Length = 197
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89
KDPN PKRP S FF+F EF + K +P S+ V K GE W ++S++ L +
Sbjct: 85 KDPNAPKRPPSGFFLFFSEFCSEIKSTNP-GISIGDVAKKLGEMWNNLSDSKKQLYV 140
>gi|426232480|ref|XP_004010250.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 201
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP SV V K G+ W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSVGDVAKKLGQMW 133
>gi|407926962|gb|EKG19868.1| High mobility group HMG1/HMG2 [Macrophomina phaseolina MS6]
Length = 106
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KA + GK KDPN PKR SA+ F + R++ ++++P K VGK GE+WK++SE
Sbjct: 12 KASKADGKKKKDPNAPKRGLSAYMFFANDMRDKVREENPGIK-FGEVGKILGERWKALSE 70
>gi|395857208|ref|XP_003800997.1| PREDICTED: high mobility group protein B3-like [Otolemur garnettii]
Length = 225
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P SV V K GE W ++S++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISVGDVAKKLGEMWNNLSDS 137
>gi|444729655|gb|ELW70064.1| High mobility group protein B1 [Tupaia chinensis]
Length = 161
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
++ K KDPN PKRP AFF+F E+ + K++HP + S+ V K GE W
Sbjct: 84 ETEKKFKDPNVPKRPPLAFFLFCSEYHPKIKEEHP-DLSIGDVAKILGEMW 133
>gi|443895134|dbj|GAC72480.1| HMG box-containing protein [Pseudozyma antarctica T-34]
Length = 99
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+++ K+ KDP PKRP SA+ F ++ RE+ K+ +P+ VG+ G KWK MSEA
Sbjct: 16 KRTTKSKKDPAAPKRPLSAYMFFSQDHRERVKQANPE-AGFGDVGRLLGAKWKEMSEA 72
>gi|149245546|ref|XP_001527250.1| hypothetical protein LELG_02079 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449644|gb|EDK43900.1| hypothetical protein LELG_02079 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 187
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K +DP+ PKRP++A+ VF E+ +E+ K D P++K ++ + E WKS+SE
Sbjct: 63 KKPRDPDLPKRPSNAYLVFCEQEKERLKLDDPESKDLS---RTMTEAWKSLSE 112
>gi|449270893|gb|EMC81539.1| High mobility group protein B2 [Columba livia]
Length = 207
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DPN PKRP SAFF+F E R + K DHP S+ K GE W S
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHP-GLSIGDTAKKLGEMWSEQS 137
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEAVSG 86
DPNKP+ S++ F++ RE++KK HP + + A + E+WK+MS G
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKG 58
>gi|82952271|ref|XP_889413.1| PREDICTED: high mobility group protein B1-like isoform 2 [Mus
musculus]
gi|407263905|ref|XP_003945567.1| PREDICTED: high mobility group protein B1-like isoform 1 [Mus
musculus]
Length = 215
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
R++ K KDPN PKRP SAFF+F +R + K +HP S+ V K GE W
Sbjct: 83 RETKKKFKDPNAPKRPPSAFFLFCSGYRPKIKGEHP-GLSIGDVAKKRGEMW 133
>gi|211929|gb|AAA48819.1| high-mobility group-2 protein [Gallus gallus]
Length = 207
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DPN PKRP SAFF+F E R + K DHP S+ K GE W S
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHP-GLSIGDTAKKLGEMWSEQS 137
Score = 35.0 bits (79), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEAVSG 86
DPNKP+ S++ F++ ++KK HP + + A + E+WK+MS G
Sbjct: 5 DPNKPRGKMSSYAYFVQTCPREHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKG 58
>gi|444721179|gb|ELW61931.1| High mobility group protein B1 [Tupaia chinensis]
Length = 212
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ + K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSMGDIAKKLGELW 133
>gi|444510285|gb|ELV09567.1| High mobility group protein B3 [Tupaia chinensis]
Length = 197
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S++
Sbjct: 77 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDS 125
>gi|241632349|ref|XP_002410341.1| structure-specific recognition protein, putative [Ixodes
scapularis]
gi|215503398|gb|EEC12892.1| structure-specific recognition protein, putative [Ixodes
scapularis]
Length = 730
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
R+ K +D NKPKR SA+F+++ E REQ K+D+P + + K GE WK++++
Sbjct: 543 RRKPKKERDENKPKRAPSAYFLWLAENREQIKRDNP-GFGITDITKRAGELWKTVTD 598
>gi|444731734|gb|ELW72082.1| High mobility group protein B1 [Tupaia chinensis]
Length = 221
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP + V K GE W
Sbjct: 84 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLPIGDVAKKLGEMW 127
>gi|388857581|emb|CCF48730.1| related to NHP6B-nonhistone chromosomal protein [Ustilago hordei]
Length = 253
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KK +K ++ K +DP+ PKRP SA+ +F E R++ +K HP +GK E WK
Sbjct: 155 KKLSKLQKRKEKRLRDPDAPKRPPSAYLLFQNEVRQEIRKKHPGMPYSEVLGKV-SEAWK 213
Query: 79 SMSE 82
++++
Sbjct: 214 ALTD 217
>gi|388854657|emb|CCF51814.1| probable NHP6B-nonhistone chromosomal protein [Ustilago hordei]
Length = 99
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+++ K+ KDP PKRP SA+ F ++ RE+ K D+P+ VG+ G +WK MS+A
Sbjct: 16 KRTTKSKKDPAAPKRPLSAYMFFSQDQRERVKADNPE-AGFGDVGRLLGARWKEMSDA 72
>gi|67475910|ref|XP_653586.1| high mobility group (HMG) box domain containing protein
[Entamoeba histolytica HM-1:IMSS]
gi|56470556|gb|EAL48200.1| high mobility group (HMG) box domain containing protein
[Entamoeba histolytica HM-1:IMSS]
gi|449703217|gb|EMD43706.1| high mobility group (HMG) box domain containing protein
[Entamoeba histolytica KU27]
Length = 111
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
PN+PKRP + +F+++ E R K++HP K V + K E+WK++ E
Sbjct: 23 PNRPKRPPTPYFLYLNEHRASIKEEHPDAK-VTEIAKIASEQWKALGE 69
>gi|171680363|ref|XP_001905127.1| hypothetical protein [Podospora anserina S mat+]
gi|170939808|emb|CAP65034.1| unnamed protein product [Podospora anserina S mat+]
Length = 98
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K G+ KDPN PKR SA+ F E RE ++++P S VGK GE+WK++S+
Sbjct: 15 KRGRGKKDPNAPKRGLSAYMFFANEQRENVREENP-GVSFGQVGKILGERWKALSD 69
>gi|346986304|ref|NP_001069753.2| high mobility group protein B3 isoform 1 [Bos taurus]
Length = 274
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S++
Sbjct: 163 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDS 211
>gi|74138677|dbj|BAE27155.1| unnamed protein product [Mus musculus]
Length = 215
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGKHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|449685055|ref|XP_002156373.2| PREDICTED: high mobility group protein homolog TDP-1-like, partial
[Hydra magnipapillata]
Length = 218
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 4/54 (7%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYK-KDHPKNKSVAAVGKAGGEKWKSMSE 82
K KDPNKPKR +A+F F+ +FREQ K K + + + A+ GEKW+SM++
Sbjct: 98 KMGKDPNKPKRCQTAYFFFLHDFREQMKGKALLEGEKIPAL---AGEKWRSMTD 148
>gi|426244704|ref|XP_004016160.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 203
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K G+ W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGQMW 133
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|294463267|gb|ADE77169.1| unknown [Picea sitchensis]
Length = 482
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
+K A+ KS + KDP+KPK P +AFF F E R ++ N +V + K GE+WK
Sbjct: 234 QKDAEGKEKSKRKEKDPSKPKHPVTAFFAFTNERRAALLEE---NHNVLQIAKILGEEWK 290
Query: 79 SMS 81
+M+
Sbjct: 291 NMT 293
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 12/65 (18%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAA--------VGKAGGEKWKSMSEA 83
DPN+PK+P ++F +F +E R++ ++ P N ++ A +G A +KW + EA
Sbjct: 377 DPNRPKKPPTSFLLFSKETRKKLVQERPGVNNTTINALISLKWKDLGTAEKQKW--VDEA 434
Query: 84 VSGLV 88
+V
Sbjct: 435 AGAMV 439
>gi|148694630|gb|EDL26577.1| mCG10155, isoform CRA_d [Mus musculus]
Length = 220
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+
Sbjct: 109 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSD 156
>gi|291410190|ref|XP_002721383.1| PREDICTED: high-mobility group box 3 [Oryctolagus cuniculus]
Length = 215
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S++
Sbjct: 104 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDS 152
>gi|300677968|gb|ADK27291.1| high-mobility-group B1b [Gekko japonicus]
Length = 215
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
+DPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 EDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|327260386|ref|XP_003215015.1| PREDICTED: FACT complex subunit SSRP1-like [Anolis carolinensis]
Length = 705
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
+KP K + GK KDPN PKRP SA+ +++ R++ + + P SV V K GE WK
Sbjct: 527 RKPRKR-QSEGKKGKDPNAPKRPLSAYMLWLNANRDKIRSESP-GMSVTDVSKKAGELWK 584
Query: 79 SMS 81
+MS
Sbjct: 585 AMS 587
>gi|255537735|ref|XP_002509934.1| transcription factor, putative [Ricinus communis]
gi|223549833|gb|EEF51321.1| transcription factor, putative [Ricinus communis]
Length = 514
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSG 86
DP KPK+P SAFF+F E R + NK+V V K GE+WK+M+E G
Sbjct: 307 DPLKPKQPMSAFFLFSNERRASLLAE---NKNVREVAKIAGEQWKNMTEEQKG 356
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSE 82
DPNKPK+PAS+F +F +E R+ ++ P N ++ A+ KWK +SE
Sbjct: 432 DPNKPKKPASSFLIFSKEARKNLAQERPVINNSTLNALISV---KWKELSE 479
>gi|332025514|gb|EGI65677.1| FACT complex subunit Ssrp1 [Acromyrmex echinatior]
Length = 721
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 16 SVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGE 75
++++KP K RKS K +D NKPKRP SAF +++ R+ K D+P S+ + K GGE
Sbjct: 518 TISEKPRKQ-RKS-KKERDENKPKRPPSAFMLWLSSARDSIKADNP-GLSITDIAKKGGE 574
Query: 76 KWKSM 80
W+ +
Sbjct: 575 MWREL 579
>gi|49258307|pdb|1J3D|A Chain A, Solution Structure Of The C-Terminal Domain Of The Hmgb2
Length = 78
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKRP SAFF+F E R + K +HP S+ K GE W S
Sbjct: 3 KDPNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQS 50
>gi|426236473|ref|XP_004012193.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 201
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K G+ W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGQMW 133
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|289741167|gb|ADD19331.1| high mobility group protein D [Glossina morsitans morsitans]
Length = 111
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+PKRP SA+ +++ E REQ KKD+P +K V + K GGE W+++ +
Sbjct: 5 RPKRPLSAYMLWLNENREQIKKDNPGSK-VTDIAKRGGELWRAIKD 49
>gi|225709792|gb|ACO10742.1| High mobility group protein B2 [Caligus rogercresseyi]
Length = 215
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
P K + +GK KDPN PKRP SAFFVF E R + K D+P + + K G W
Sbjct: 80 PPKGSKAAGKRKKDPNAPKRPPSAFFVFCAEHRGRIKADNP-GMGIGDIAKQLGLLW 135
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
KDPNKPK S++ F+ RE++KK HP + + K E+W++MS
Sbjct: 4 KDPNKPKGKTSSYAFFVATCREEHKKKHPGTSVNFSEFSKKCSERWRTMS 53
>gi|289741165|gb|ADD19330.1| high mobility group protein D [Glossina morsitans morsitans]
gi|289741169|gb|ADD19332.1| nucleosome-binding factor SPN POB3 subunit [Glossina morsitans
morsitans]
Length = 111
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+PKRP SA+ +++ E REQ KKD+P +K V + K GGE W+++ +
Sbjct: 5 RPKRPLSAYMLWLNENREQIKKDNPGSK-VTDIAKRGGELWRAIKD 49
>gi|118343938|ref|NP_001071793.1| transcription factor protein [Ciona intestinalis]
gi|70570759|dbj|BAE06616.1| transcription factor protein [Ciona intestinalis]
Length = 164
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
K ++ K+ K KD N PK+P +A+F+FM + R++ K++P + S+ + K G+KW+
Sbjct: 3 KTKRSSLKTLKFRKDKNAPKKPLTAYFIFMNDCRQKVIKENP-SLSITEISKLVGKKWRE 61
Query: 80 MS 81
S
Sbjct: 62 TS 63
>gi|213514690|ref|NP_001133170.1| high-mobility group box 2 [Salmo salar]
gi|197632301|gb|ACH70874.1| high-mobility group box 2 [Salmo salar]
gi|221219834|gb|ACM08578.1| High mobility group protein B2 [Salmo salar]
gi|221220870|gb|ACM09096.1| High mobility group protein B2 [Salmo salar]
gi|223646276|gb|ACN09896.1| High mobility group protein B2 [Salmo salar]
gi|223646962|gb|ACN10239.1| High mobility group protein B2 [Salmo salar]
gi|223672123|gb|ACN12243.1| High mobility group protein B2 [Salmo salar]
gi|223672825|gb|ACN12594.1| High mobility group protein B2 [Salmo salar]
Length = 214
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
P K + +GK KDPN PKRP SAFFVF E R + K D+P + + K G W
Sbjct: 80 PPKGSKAAGKRKKDPNAPKRPPSAFFVFCAEHRGRIKADNP-GMGIGDIAKQLGLLW 135
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
KDPNKPK S++ F+ RE++KK HP + + K E+W++MS
Sbjct: 4 KDPNKPKGKTSSYAFFVATCREEHKKKHPGTSVNFSEFSKKCSERWRTMS 53
>gi|444511434|gb|ELV09880.1| High mobility group protein B1 [Tupaia chinensis]
Length = 165
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+ + K D+P S++ + K GE W
Sbjct: 47 KDPNAPKRPPSAFFLFCSEYCPEIKGDYP-GLSISDIAKKLGEMW 90
>gi|440910877|gb|ELR60625.1| High mobility group protein B3 [Bos grunniens mutus]
Length = 236
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S++
Sbjct: 125 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDS 173
>gi|403300479|ref|XP_003940964.1| PREDICTED: high mobility group protein B1-like [Saimiri boliviensis
boliviensis]
Length = 215
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
K KDPN PKRP SAFF+F E+R + K +HP S+ V K G+ W
Sbjct: 87 KKLKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGKMW 133
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S+ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSCAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|194755944|ref|XP_001960239.1| GF11622 [Drosophila ananassae]
gi|190621537|gb|EDV37061.1| GF11622 [Drosophila ananassae]
Length = 111
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+PKRP SA+ +++ E REQ KKD+P +K V + K GGE W+ + +
Sbjct: 5 RPKRPLSAYMLWLNENREQIKKDNPGSK-VTDIAKRGGELWRGLKD 49
>gi|81673590|gb|AAI09794.1| High-mobility group box 3 [Bos taurus]
gi|296471156|tpg|DAA13271.1| TPA: high mobility group protein B3 isoform 1 [Bos taurus]
Length = 236
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S++
Sbjct: 125 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDS 173
>gi|238486744|ref|XP_002374610.1| nucleosome binding protein (Nhp6a), putative [Aspergillus flavus
NRRL3357]
gi|317144043|ref|XP_003189559.1| non-histone chromosomal protein 6 [Aspergillus oryzae RIB40]
gi|220699489|gb|EED55828.1| nucleosome binding protein (Nhp6a), putative [Aspergillus flavus
NRRL3357]
Length = 104
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
KDPN PKR SA+ F + RE+ ++++P S VGK GEKWK++SEA
Sbjct: 20 KDPNAPKRGLSAYMFFANDNREKVREENP-GISFGQVGKMLGEKWKALSEA 69
>gi|393906922|gb|EFO20426.2| high mobility group protein [Loa loa]
Length = 93
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKR SAFF++M E R++ KK SV V KA G +W +M++
Sbjct: 19 DPNAPKRAMSAFFIWMNENRDRIKK---PGMSVGDVAKAAGIEWAAMTD 64
>gi|195382097|ref|XP_002049768.1| GJ21774 [Drosophila virilis]
gi|194144565|gb|EDW60961.1| GJ21774 [Drosophila virilis]
Length = 729
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
D NKPKR +AF +++ + REQ K+D+P K V + K GGE WK +
Sbjct: 555 DSNKPKRATTAFMLWLNDTREQIKRDNPGIK-VTEIAKKGGEMWKEL 600
>gi|444729656|gb|ELW70065.1| High mobility group protein B1 [Tupaia chinensis]
Length = 161
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
++ K KDPN PKRP AFF+F E+ + K++HP + S+ V K GE W
Sbjct: 84 ETEKKFKDPNVPKRPPLAFFLFCSEYHPKIKEEHP-DLSIGDVAKKLGEMW 133
>gi|609553|gb|AAA74556.1| HMG-T2 [Oncorhynchus mykiss]
Length = 215
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
P K + +GK KDPN PKRP SAFFVF E R + K D+P + + K G W
Sbjct: 80 PPKGSKAAGKRKKDPNAPKRPPSAFFVFCAEHRGRIKADNP-GMGIGDIAKQLGLLW 135
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
KDPNKPK S++ F+ RE++KK HP + + K E+W++MS
Sbjct: 4 KDPNKPKGKTSSYAFFVATCREEHKKKHPGTSVNFSEFSKKCSERWRTMS 53
>gi|348551110|ref|XP_003461373.1| PREDICTED: high mobility group protein B3-like [Cavia porcellus]
Length = 202
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDS 137
>gi|354495940|ref|XP_003510086.1| PREDICTED: high mobility group protein B3-like [Cricetulus griseus]
gi|344249016|gb|EGW05120.1| High mobility group protein B3 [Cricetulus griseus]
Length = 200
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDS 137
>gi|221221606|gb|ACM09464.1| High mobility group protein B2 [Salmo salar]
gi|223646184|gb|ACN09850.1| High mobility group protein B2 [Salmo salar]
gi|223646756|gb|ACN10136.1| High mobility group protein B2 [Salmo salar]
gi|223672031|gb|ACN12197.1| High mobility group protein B2 [Salmo salar]
gi|223672611|gb|ACN12487.1| High mobility group protein B2 [Salmo salar]
Length = 214
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
P K + +GK KDPN PKRP SAFFVF E R + K D+P + + K G W
Sbjct: 80 PPKGSKAAGKRKKDPNAPKRPPSAFFVFCAEHRGRIKADNP-GMGIGDIAKQLGLLW 135
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
KDPNKPK S++ F+ RE++KK HP + + K E+W++MS
Sbjct: 4 KDPNKPKGKTSSYAFFVATCREEHKKKHPGTSVNFSEFSKKCSERWRTMS 53
>gi|350588033|ref|XP_003482539.1| PREDICTED: high mobility group protein B3-like [Sus scrofa]
gi|350588037|ref|XP_003482541.1| PREDICTED: high mobility group protein B3-like [Sus scrofa]
Length = 196
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDS 137
>gi|311277128|ref|XP_003135516.1| PREDICTED: high mobility group protein B3-like [Sus scrofa]
Length = 202
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDS 137
>gi|296202119|ref|XP_002748265.1| PREDICTED: high mobility group protein B1-like isoform 1
[Callithrix jacchus]
gi|390463329|ref|XP_003733013.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 214
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
DPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEIW 133
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|432951224|ref|XP_004084757.1| PREDICTED: high mobility group protein B2-like [Oryzias latipes]
Length = 221
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DPN PKRP SAFFVF + R + K+D+P S+ + K GE W + S
Sbjct: 114 DPNAPKRPPSAFFVFCSDHRPKIKEDNP-GISIGDIAKKLGELWATQS 160
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMS 81
KDPNKP+ SA+ F+ RE++KK HP + + A K E+WK+MS
Sbjct: 25 TKDPNKPRGKTSAYAYFVATCREEHKKKHPGTSVNFAEFSKKCSERWKTMS 75
>gi|302411796|ref|XP_003003731.1| nucleosome binding protein [Verticillium albo-atrum VaMs.102]
gi|261357636|gb|EEY20064.1| nucleosome binding protein [Verticillium albo-atrum VaMs.102]
gi|346978438|gb|EGY21890.1| nucleosome binding protein [Verticillium dahliae VdLs.17]
Length = 102
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVS 85
+K+ +A KDPN PKR SA+ F E RE ++++P S VGK GE+WK+++E
Sbjct: 13 KKAKRAKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKALNEKQR 71
Query: 86 G 86
G
Sbjct: 72 G 72
>gi|195431780|ref|XP_002063906.1| GK15658 [Drosophila willistoni]
gi|194159991|gb|EDW74892.1| GK15658 [Drosophila willistoni]
Length = 112
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+PKRP SA+ +++ E REQ KKD+P +K V + K GGE W+ + +
Sbjct: 5 RPKRPLSAYMLWLNENREQIKKDNPGSK-VTDIAKRGGELWRGLKD 49
>gi|357139210|ref|XP_003571177.1| PREDICTED: high mobility group B protein 13-like [Brachypodium
distachyon]
Length = 537
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 3/50 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DP+KPK+P SA+FV+ +E R + K+V +GK GE+WKSM++A
Sbjct: 325 DPSKPKQPMSAYFVYSQERRAALVAE---KKNVPEIGKITGEEWKSMTDA 371
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 5/50 (10%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMS 81
DPN+PK+PAS+F +F +E R+Q ++ P N ++ A+ KWK +S
Sbjct: 450 DPNRPKKPASSFLLFSKEARKQLVEERPGVNNSTINALISV---KWKELS 496
>gi|296810682|ref|XP_002845679.1| non-histone chromosomal protein 6 [Arthroderma otae CBS 113480]
gi|238843067|gb|EEQ32729.1| non-histone chromosomal protein 6 [Arthroderma otae CBS 113480]
Length = 103
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
GR K KDPN PKR SA+ +F E R ++++P N + VGK GE+WK++S+
Sbjct: 13 GRGVEKKKKDPNAPKRGLSAYMIFANEQRAAVREENP-NITFGQVGKVLGERWKALSD 69
>gi|17537205|ref|NP_496970.1| Protein HMG-1.1 [Caenorhabditis elegans]
gi|3702826|gb|AAC78598.1| high mobility group protein 1.1 [Caenorhabditis elegans]
gi|15718335|emb|CAB54448.2| Protein HMG-1.1 [Caenorhabditis elegans]
Length = 95
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K +K GKA KDPN PKR SAFF +M+E RE+ KK VA V KA G +W +
Sbjct: 12 PVKRVKKGGKA-KDPNAPKRAMSAFFFWMQENRERIKK---PGMGVADVAKAAGVEWGKL 67
Query: 81 SE 82
++
Sbjct: 68 TD 69
>gi|57112857|ref|XP_538194.1| PREDICTED: high mobility group protein B3 [Canis lupus familiaris]
gi|338729649|ref|XP_001505130.3| PREDICTED: high mobility group protein B3-like isoform 1 [Equus
caballus]
Length = 201
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDS 137
>gi|417396975|gb|JAA45521.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 200
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDS 137
>gi|410989557|ref|XP_004001438.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B3
[Felis catus]
Length = 201
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDS 137
>gi|301778413|ref|XP_002924621.1| PREDICTED: high mobility group protein B3-like [Ailuropoda
melanoleuca]
Length = 201
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDS 137
>gi|42601334|gb|AAS21361.1| high mobility group protein 2 [Oikopleura dioica]
Length = 105
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 31/52 (59%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
G+A KDPN PKRP +AFF+F + R KK P+ V+ V K G WK +
Sbjct: 2 GRAKKDPNAPKRPQTAFFLFAADNRADAKKCLPEGSRVSEVAKKLGVMWKEV 53
>gi|302684321|ref|XP_003031841.1| hypothetical protein SCHCODRAFT_76744 [Schizophyllum commune
H4-8]
gi|300105534|gb|EFI96938.1| hypothetical protein SCHCODRAFT_76744 [Schizophyllum commune
H4-8]
Length = 114
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KA KDPN PKR SA+ F +++RE+ K ++P + S +GK G KWK M E
Sbjct: 23 KAKKDPNAPKRALSAYMFFSQDWRERVKAENP-DASFGELGKILGAKWKEMDE 74
>gi|426258242|ref|XP_004022724.1| PREDICTED: high mobility group protein B3 [Ovis aries]
Length = 248
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S++
Sbjct: 160 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDS 208
>gi|395545985|ref|XP_003774876.1| PREDICTED: high mobility group protein B3-like [Sarcophilus
harrisii]
Length = 201
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDS 137
>gi|149410917|ref|XP_001509199.1| PREDICTED: high mobility group protein B3-like isoform 1
[Ornithorhynchus anatinus]
gi|345306624|ref|XP_003428488.1| PREDICTED: high mobility group protein B3-like isoform 2
[Ornithorhynchus anatinus]
Length = 201
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDS 137
>gi|281338637|gb|EFB14221.1| hypothetical protein PANDA_014002 [Ailuropoda melanoleuca]
Length = 168
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDS 137
>gi|440298682|gb|ELP91313.1| hypothetical protein EIN_153200 [Entamoeba invadens IP1]
Length = 185
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPNKPK+P +A+ +++ E R + K+ P K V V K GE WK+M E
Sbjct: 96 DPNKPKKPQTAYMLYLNEHRAEIKEKFPDMK-VTEVAKKAGENWKAMGE 143
>gi|45382755|ref|NP_990817.1| high mobility group protein B2 [Gallus gallus]
gi|123373|sp|P26584.2|HMGB2_CHICK RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|211927|gb|AAA48818.1| non-histone chromosomal protein [Gallus gallus]
Length = 207
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
DPN PKRP SAFF+F E R + K DHP S+ K GE W
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHP-GLSIGDTAKKLGEMW 133
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEAVSG 86
DPNKP+ S++ F++ RE++KK HP + + A + E+WK+MS G
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKG 58
>gi|444730168|gb|ELW70558.1| High mobility group protein B3 [Tupaia chinensis]
Length = 369
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K G+ W ++S++
Sbjct: 89 DPNAPKRPLSGFFLFSSEFRPKIKSTNP-GISIGDVAKKLGDMWNNLSDS 137
>gi|389611269|dbj|BAM19246.1| high mobility group protein D [Papilio polytes]
Length = 120
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+KPKRP SA+ +++ REQ K D+P K V + K GGE W+SM +
Sbjct: 3 DKPKRPMSAYMLWLNSAREQIKADNPGLK-VTEIAKKGGEIWRSMED 48
>gi|392354293|ref|XP_003751730.1| PREDICTED: high mobility group protein B3-like isoform 1 [Rattus
norvegicus]
Length = 241
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S++
Sbjct: 130 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDS 178
>gi|148694627|gb|EDL26574.1| mCG10155, isoform CRA_b [Mus musculus]
Length = 206
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+
Sbjct: 95 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSD 142
>gi|145536343|ref|XP_001453899.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421632|emb|CAK86502.1| unnamed protein product [Paramecium tetraurelia]
Length = 236
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K +DPN PK+P +AFF+F +++R++ + +P+ K + + + G KW SMSE
Sbjct: 44 KKERDPNAPKKPLTAFFLFNQKYRQKVVERNPEIK-LTQISQMAGNKWTSMSE 95
>gi|392340368|ref|XP_003754052.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392347889|ref|XP_003749961.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 215
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+ + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDVAKKLGEMW 133
>gi|148682307|gb|EDL14254.1| mCG114640 [Mus musculus]
Length = 200
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSD 136
>gi|6680231|ref|NP_032279.1| high mobility group protein B3 [Mus musculus]
gi|20138160|sp|O54879.3|HMGB3_MOUSE RecName: Full=High mobility group protein B3; AltName: Full=High
mobility group protein 2a; Short=HMG-2a; AltName:
Full=High mobility group protein 4; Short=HMG-4
gi|2738989|gb|AAC16925.1| high mobility group protein homolog HMG4 [Mus musculus]
gi|15030059|gb|AAH11276.1| Hmgb3 protein [Mus musculus]
gi|26327985|dbj|BAC27733.1| unnamed protein product [Mus musculus]
gi|54035419|gb|AAH83352.1| High mobility group box 3 [Mus musculus]
gi|74146994|dbj|BAE27437.1| unnamed protein product [Mus musculus]
gi|74186760|dbj|BAE34835.1| unnamed protein product [Mus musculus]
gi|74192972|dbj|BAE34988.1| unnamed protein product [Mus musculus]
gi|74194280|dbj|BAE24671.1| unnamed protein product [Mus musculus]
gi|148694626|gb|EDL26573.1| mCG10155, isoform CRA_a [Mus musculus]
gi|148694628|gb|EDL26575.1| mCG10155, isoform CRA_a [Mus musculus]
gi|187957408|gb|AAI58038.1| High mobility group box 3 [Mus musculus]
Length = 200
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSD 136
>gi|90103305|gb|ABD85497.1| high mobility group box 1-like [Ictalurus punctatus]
Length = 182
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKRP SAFF+F E+R + K++ P S+ V K GE W S
Sbjct: 70 KDPNAPKRPPSAFFIFCAEYRPKVKEETP-GLSIGDVAKKLGEMWNKTS 117
>gi|321461212|gb|EFX72246.1| hypothetical protein DAPPUDRAFT_201206 [Daphnia pulex]
Length = 759
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K KD N+PKRP S++ +++ + REQ KKD+P SV + K GGE W+ + +
Sbjct: 575 KKDKDANRPKRPQSSYMLWLNDSREQIKKDNP-GISVTDLMKKGGEMWQKVED 626
>gi|205539816|sp|P0C6E5.1|HG3BL_HUMAN RecName: Full=Putative high mobility group protein B3-like protein
Length = 187
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+K KDPN PKRP S FF+F EF + K +P + V K GE WK++
Sbjct: 80 PAKGGKK-----KDPNAPKRPPSGFFLFCSEFCPKSKSTNP-GIPIGDVAKKLGEMWKNL 133
Query: 81 SEA 83
+++
Sbjct: 134 NDS 136
>gi|444728198|gb|ELW68662.1| High mobility group protein B1 [Tupaia chinensis]
Length = 132
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKRP SAFF+F E+R + K +HP S V K GE W + +
Sbjct: 16 KDPNAPKRPPSAFFLFCSEYRSKIKGEHP-GLSNGDVAKKLGEIWNNTA 63
>gi|355694844|gb|AER99804.1| high-mobility group box 3 [Mustela putorius furo]
Length = 197
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+
Sbjct: 91 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSD 138
>gi|403217000|emb|CCK71495.1| hypothetical protein KNAG_0H00800 [Kazachstania naganishii CBS
8797]
Length = 118
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKR SA+ F E R+ K ++P N + +GK GEKWK+MS
Sbjct: 40 KDPNAPKRSMSAYMFFANENRDIVKSENP-NATFGQLGKLLGEKWKNMS 87
>gi|348525338|ref|XP_003450179.1| PREDICTED: high mobility group-T protein-like isoform 1
[Oreochromis niloticus]
Length = 200
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKRP SAFF+F +FR + K ++P S+ K GE W S S
Sbjct: 89 KDPNAPKRPPSAFFLFCADFRPKIKSEYP-GLSIGDTAKKLGEMWNSSS 136
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
KDP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 2 VKDPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 52
>gi|205780950|sp|B2RPK0.1|HGB1A_HUMAN RecName: Full=Putative high mobility group protein B1-like 1;
AltName: Full=High mobility group protein B1 pseudogene
1; AltName: Full=Putative high mobility group protein
1-like 1; Short=HMG-1L1
gi|187950665|gb|AAI37483.1| High-mobility group box 1-like 1 [Homo sapiens]
gi|187953577|gb|AAI37484.1| High-mobility group box 1-like 1 [Homo sapiens]
Length = 211
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+ + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDVAKKLGEMW 133
>gi|401624308|gb|EJS42370.1| abf2p [Saccharomyces arboricola H-6]
Length = 183
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAV 84
PKRP SA+F+F+++ R Q+ K++P + A + K GEKW+++ +
Sbjct: 43 PKRPTSAYFLFLQDHRSQFVKENPTLRP-AEISKVAGEKWQTLDAGI 88
>gi|344299188|ref|XP_003421269.1| PREDICTED: high mobility group protein B3-like [Loxodonta africana]
Length = 200
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSD 136
>gi|296200444|ref|XP_002747606.1| PREDICTED: high mobility group protein B1-like isoform 2
[Callithrix jacchus]
Length = 210
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDP+ PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPSAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
>gi|253756810|gb|ACT35162.1| HmgB3y, partial [Monodelphis domestica]
Length = 193
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+
Sbjct: 86 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSD 133
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
DP KPK SA+ F++ RE++KK +P+ + A K E+WK+MS
Sbjct: 2 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKNMS 50
>gi|444728196|gb|ELW68660.1| High mobility group protein B1 [Tupaia chinensis]
Length = 221
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKRP SAFF+F E+R + K +HP S V K GE W + +
Sbjct: 105 KDPNAPKRPPSAFFLFCSEYRSKIKGEHP-GLSNGDVAKKLGEIWNNTA 152
>gi|339715208|ref|NP_001092721.2| high-mobility group box 1b [Danio rerio]
Length = 197
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAV 84
K KDPN PKRP SAFF+F ++R + K ++P S+ + K GE W S S V
Sbjct: 86 KRFKDPNAPKRPPSAFFIFCGDYRPKIKGENP-GLSIGDIAKKLGEMWNSSSAEV 139
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
KDP KP+ S++ F++ RE++KK HP+ + + + K E+WK+MS
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMS 52
>gi|358337037|dbj|GAA55457.1| structure-specific recognition protein 1 [Clonorchis sinensis]
Length = 723
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
K KDPN P RP +A+ ++ E R++ K SVA V KA GE+W+++
Sbjct: 571 KRVKDPNAPSRPPTAYIMWFNEHRDEISKSIGNPTSVAEVAKAAGERWRNI 621
>gi|335892928|gb|AEH59759.1| high mobility group box 1 [Lethenteron camtschaticum]
Length = 208
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
G + + KDPN PKRP SAFF++ E+R + + ++P ++ ++ K GE W
Sbjct: 83 GERGSRKKKDPNAPKRPPSAFFIYCAEYRSKVRAENP-GLTIGSIAKKLGEMW 134
>gi|291415754|ref|XP_002724114.1| PREDICTED: high-mobility group box 2-like [Oryctolagus cuniculus]
Length = 234
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DPN PKRP SAFF+F E R + K +HP S+ K GE W S
Sbjct: 115 DPNAPKRPPSAFFLFCSEHRPEIKSEHP-GLSIGDTAKKLGEMWSEQS 161
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 22 AKAGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKS 79
A GR+S K DPNKP+ S++ F++ RE++KK HP + + A K E+WK+
Sbjct: 16 APGGRRSVVMGKGDPNKPRDKMSSYAFFVQMCREEHKKKHPDSSINFAEFSKKCSERWKT 75
Query: 80 MS 81
MS
Sbjct: 76 MS 77
>gi|1419611|emb|CAA67363.1| HMG [Lampetra fluviatilis]
Length = 208
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
G + + KDPN PKRP SAFF++ E+R + + ++P ++ ++ K GE W
Sbjct: 83 GERGSRKKKDPNAPKRPPSAFFIYCAEYRSKVRAENP-GLTIGSIAKKLGEMW 134
>gi|313224350|emb|CBY20139.1| unnamed protein product [Oikopleura dioica]
Length = 91
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 31/52 (59%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
G+A KDPN PKRP +AFF+F + R KK P+ V+ V K G WK +
Sbjct: 2 GRAKKDPNAPKRPQTAFFLFAADNRADAKKCLPEGSRVSEVAKKLGVMWKEV 53
>gi|56384901|gb|AAV85889.1| high mobility group 1 protein [Pelodiscus sinensis]
Length = 202
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSD 136
>gi|547652|sp|P36194.2|HMGB1_CHICK RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|391636|dbj|BAA03260.1| HMG-1 [Gallus gallus]
Length = 201
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+
Sbjct: 88 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSD 135
>gi|358410870|ref|XP_003581858.1| PREDICTED: high mobility group protein B3-like [Bos taurus]
Length = 197
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDS 137
>gi|349802605|gb|AEQ16775.1| putative high mobility group box 3 [Pipa carvalhoi]
Length = 149
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKRP S FF+F EFR + K +P S+ V K GE W +++E
Sbjct: 64 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNE 111
>gi|348538096|ref|XP_003456528.1| PREDICTED: high mobility group protein B2-like [Oreochromis
niloticus]
Length = 196
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DPN PKRP SAFFVF + R + K+D+P S+ + K GE W + S
Sbjct: 91 DPNAPKRPPSAFFVFCSDHRPKIKEDNP-GISIGDIAKKLGEMWATQS 137
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMS 81
KDPNKP+ S++ F+ RE++KK HP + + A K E+WK+MS
Sbjct: 2 TKDPNKPRGKTSSYAFFVATCREEHKKKHPGTSVNFAEFSKKCSERWKTMS 52
>gi|164450473|ref|NP_001106728.1| high mobility group protein B3 isoform 2 [Bos taurus]
gi|146324910|sp|Q32L31.2|HMGB3_BOVIN RecName: Full=High mobility group protein B3
gi|296471157|tpg|DAA13272.1| TPA: high mobility group protein B3 isoform 2 [Bos taurus]
gi|399227521|gb|AFP36466.1| HMGB3 transcript variant 1/2 [Bos taurus]
gi|399227522|gb|AFP36467.1| HMGB3 transcript variant 3 [Bos taurus]
Length = 200
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDS 137
>gi|449269345|gb|EMC80131.1| High mobility group protein B3 [Columba livia]
Length = 202
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSD 136
>gi|291403518|ref|XP_002718101.1| PREDICTED: high mobility group box 3-like [Oryctolagus cuniculus]
Length = 197
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S++
Sbjct: 89 DPNAPKRPPSRFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDS 137
>gi|224098124|ref|XP_002198052.1| PREDICTED: high mobility group protein B3 isoform 1 [Taeniopygia
guttata]
gi|326924638|ref|XP_003208532.1| PREDICTED: high mobility group protein B3-like [Meleagris
gallopavo]
gi|449498655|ref|XP_004177286.1| PREDICTED: high mobility group protein B3 isoform 2 [Taeniopygia
guttata]
Length = 202
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSD 136
>gi|254826706|ref|NP_001157151.1| high mobility group protein B3 [Monodelphis domestica]
gi|253756818|gb|ACT35166.1| HmgB3x [Monodelphis domestica]
Length = 201
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSD 136
>gi|355784552|gb|EHH65403.1| hypothetical protein EGM_02155, partial [Macaca fascicularis]
Length = 116
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+ + DPN PKRP S FF+F EF + K +P S+ V K GE W ++
Sbjct: 18 PAKGGKNN-----DPNAPKRPLSGFFLFCSEFHPKMKSTNP-GISIGDVAKKLGEMWNNL 71
Query: 81 SEA 83
+++
Sbjct: 72 NDS 74
>gi|149726074|ref|XP_001503141.1| PREDICTED: high mobility group protein B1-like [Equus caballus]
Length = 215
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+ + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSEAVSG 86
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS G
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEEG 58
>gi|40352857|gb|AAH64790.1| Hmgb1 protein [Mus musculus]
Length = 215
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP AFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPLAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|196010223|ref|XP_002114976.1| hypothetical protein TRIADDRAFT_64155 [Trichoplax adhaerens]
gi|190582359|gb|EDV22432.1| hypothetical protein TRIADDRAFT_64155 [Trichoplax adhaerens]
Length = 694
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
K A+DPN PKRP S + +++++ R++ K ++P + +VA V K GE WKS+
Sbjct: 547 KNARDPNLPKRPLSGYMLWLQKQRDRIKNENP-SFTVAEVAKKAGEIWKSL 596
>gi|148229870|ref|NP_001080585.1| high mobility group box 3 [Xenopus laevis]
gi|27882654|gb|AAH44009.1| Hmgb3-prov protein [Xenopus laevis]
Length = 202
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P ++ V K GE W ++S++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GITIGDVAKKLGEMWNNLSDS 137
>gi|290560936|ref|NP_001166812.1| high mobility group box 3 [Rattus norvegicus]
gi|392354295|ref|XP_003751731.1| PREDICTED: high mobility group protein B3-like isoform 2 [Rattus
norvegicus]
gi|149027076|gb|EDL82825.1| rCG56793 [Rattus norvegicus]
gi|165971283|gb|AAI58740.1| Hmgb3 protein [Rattus norvegicus]
Length = 200
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDS 137
>gi|167396118|ref|XP_001741910.1| non-histone chromosomal protein [Entamoeba dispar SAW760]
gi|165893321|gb|EDR21615.1| non-histone chromosomal protein, putative [Entamoeba dispar
SAW760]
Length = 111
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
PN+PK+P SA+F+++ E R K++HP K + K E+WK++ E
Sbjct: 23 PNRPKKPQSAYFLYLNEHRASIKEEHPDIK-FTEISKVASEQWKALGE 69
>gi|380476672|emb|CCF44585.1| non-histone chromosomal protein 6 [Colletotrichum higginsianum]
Length = 96
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+A KDPN PKR SA+ F E RE ++++P S VGK GE+WK+++E
Sbjct: 18 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKILGERWKALNE 69
>gi|302851253|ref|XP_002957151.1| hypothetical protein VOLCADRAFT_77427 [Volvox carteri f.
nagariensis]
gi|300257558|gb|EFJ41805.1| hypothetical protein VOLCADRAFT_77427 [Volvox carteri f.
nagariensis]
Length = 94
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K KDPN PK+P A+ F ++ RE+ K ++P SV +GK GE WK +SE
Sbjct: 16 KKVKDPNAPKKPLGAYMWFCKDMRERVKAENP-GMSVTDIGKRLGELWKEVSE 67
>gi|225704132|gb|ACO07912.1| High mobility group protein B1 [Oncorhynchus mykiss]
Length = 194
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
KDPN PKRP SAFF+F +FR + K +HP S+ K G W S
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKIKSEHP-GLSIGDTAKKLGVMWNS 134
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
KDP KP+ S++ F++ R ++KK HP+ + + A K E+WK MS
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCRAEHKKKHPEASVNFAEFSKKCSERWKPMS 52
>gi|225703866|gb|ACO07779.1| High mobility group protein B1 [Oncorhynchus mykiss]
Length = 194
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
KDPN PKRP SAFF+F +FR + K +HP S+ K G W S
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKIKSEHP-GLSIGDTAKKLGVMWNS 134
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
KDP KP+ S++ F++ R ++KK HP+ + + A K E+WK MS
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCRAEHKKKHPEASVNFAEFSKKCSERWKPMS 52
>gi|221221922|gb|ACM09622.1| High mobility group protein B1 [Salmo salar]
Length = 196
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
KDPN PKRP SAFF+F +FR + K +HP S+ K G W S
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKIKSEHP-GLSIGDTAKKLGVMWNS 134
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
KDP KP+ S++ F++ R ++KK HP+ + + A K E+WK MS
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCRAEHKKKHPEASVNFAEFSKKCSERWKPMS 52
>gi|221219434|gb|ACM08378.1| High mobility group protein B1 [Salmo salar]
Length = 196
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
KDPN PKRP SAFF+F +FR + K +HP S+ K G W S
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKIKSEHP-GLSIGDTAKKLGVMWNS 134
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
KDP KP+ S++ F++ R ++KK HP+ + + A K E+WK MS
Sbjct: 3 KDPRKPRGKMSSYAYFVQTCRAEHKKKHPEASVNFAEFSKKCSERWKPMS 52
>gi|156553871|ref|XP_001600877.1| PREDICTED: FACT complex subunit Ssrp1-like [Nasonia vitripennis]
Length = 735
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
KD NKPKRPASA+ +++ RE+ K +P K V V + GGE WK +
Sbjct: 546 KDENKPKRPASAYMLYLNSVREEIKAKYPGLK-VTEVVQKGGEMWKEL 592
>gi|291392907|ref|XP_002712835.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
Length = 208
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+ + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYCPKIKGEHP-GLSIGDVAKKLGEMW 133
>gi|118488333|gb|ABK95985.1| unknown [Populus trichocarpa]
Length = 232
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DP KPK P SAFF+F E R + NK+V V K GE+WK+M+E
Sbjct: 29 DPLKPKHPLSAFFLFSNERRAALLAE---NKNVLEVAKIAGEEWKNMTE 74
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
DPNKPK+PAS+F +F +E R+ +HP S KWK +
Sbjct: 154 DPNKPKKPASSFLLFSKETRKSLVHEHPGINSSTLTAMISV-KWKEL 199
>gi|119596659|gb|EAW76253.1| hCG2042470 [Homo sapiens]
Length = 118
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+ DPN PKRP S FF+F EF + K +P S+ V K GE W ++
Sbjct: 6 PAKGGKN------DPNAPKRPLSGFFLFCSEFCPKIKSTNP-GISIGDVAKKLGEMWNNL 58
Query: 81 SEA 83
+++
Sbjct: 59 NDS 61
>gi|395830755|ref|XP_003788484.1| PREDICTED: high mobility group protein B1-like [Otolemur
garnettii]
Length = 135
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN P RP SAFF+F E+ + K +HP S+ V K GE W
Sbjct: 16 KDPNAPNRPPSAFFLFCSEYHPEIKGEHP-GLSIGDVAKKLGEMW 59
>gi|384500344|gb|EIE90835.1| hypothetical protein RO3G_15546 [Rhizopus delemar RA 99-880]
Length = 183
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 22 AKAGRKSGKAA-----KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEK 76
K GRKS AA +DPN PK P + FF++ R+ K + P N+S+ V + G+K
Sbjct: 34 VKPGRKSTNAAVAKKKRDPNAPKGPGNVFFLYCRMERDNIKDEVP-NESLGEVTRLLGQK 92
Query: 77 WKSMS 81
WK+++
Sbjct: 93 WKALT 97
>gi|183212221|gb|ACC54773.1| high-mobility group box 1 beta [Xenopus borealis]
Length = 95
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
K KDPN PKRP SAFF+F +FR + K ++P ++ + K GE W
Sbjct: 35 KKFKDPNAPKRPPSAFFLFCSDFRPKIKGEYP-GSTIGDIAKKLGEMW 81
>gi|145540136|ref|XP_001455758.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124423566|emb|CAK88361.1| unnamed protein product [Paramecium tetraurelia]
Length = 226
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 14/73 (19%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQY--------KKDHPKNKSVAAV 69
N KP K K +DPN PKRP + FF+F +++R++ ++D+ + +
Sbjct: 19 NDKPEK------KKERDPNAPKRPLTPFFLFSQKYRDKVLERNPGIDQRDYSLEVKLTQI 72
Query: 70 GKAGGEKWKSMSE 82
+ G+KW SMSE
Sbjct: 73 SQMAGQKWNSMSE 85
>gi|453083241|gb|EMF11287.1| HMG_box-domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 109
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
K K+ TR +K + K GK KDPN PKR SA+ F + R++ ++D+P K
Sbjct: 3 KEKTTTRGSKKAAGKA------DGGKRKKDPNMPKRGLSAYMFFANDTRDKVREDNPGIK 56
Query: 65 SVAAVGKAGGEKWKSMSE 82
VGK GE+WK+++E
Sbjct: 57 -FGEVGKLLGERWKALNE 73
>gi|359062996|ref|XP_003585778.1| PREDICTED: high mobility group protein B3-like, partial [Bos
taurus]
Length = 186
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDS 137
>gi|290986470|ref|XP_002675947.1| predicted protein [Naegleria gruberi]
gi|284089546|gb|EFC43203.1| predicted protein [Naegleria gruberi]
Length = 215
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKD--HPKNKSVAAVGKAGGEKWKSMS 81
AG+KS K KDPN PKRP + FF+F +E RE+ K + KS + V K GE+W ++
Sbjct: 2 AGKKSSKK-KDPNAPKRPKTGFFLFCDERREKVKATLGEGEKKSASEVSKLLGEEWGKLT 60
Query: 82 EA 83
++
Sbjct: 61 DS 62
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
D N PKRP S++ +F + +R+ ++P K V V K GEKW M++A
Sbjct: 116 DENAPKRPLSSYMLFSQTYRKSLVAENPTLK-VTEVAKLVGEKWGKMNDA 164
>gi|397466921|ref|XP_003805186.1| PREDICTED: high mobility group protein B3 [Pan paniscus]
gi|410057106|ref|XP_001135676.3| PREDICTED: high mobility group protein B3 isoform 1 [Pan
troglodytes]
gi|426397737|ref|XP_004065063.1| PREDICTED: high mobility group protein B3 isoform 2 [Gorilla
gorilla gorilla]
gi|119619804|gb|EAW99398.1| high-mobility group box 3, isoform CRA_b [Homo sapiens]
Length = 220
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W +++++
Sbjct: 109 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDS 157
>gi|339250984|ref|XP_003372975.1| high mobility group protein 1.2 [Trichinella spiralis]
gi|316969210|gb|EFV53345.1| high mobility group protein 1.2 [Trichinella spiralis]
Length = 599
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
A RK + KDPN PKR SAFF F R + +K HP K V + + G WK++++
Sbjct: 82 ALRKRKRNKKDPNAPKRALSAFFFFSHAERPEVQKSHPDWK-VGQLAQELGRMWKALND 139
Score = 35.0 bits (79), Expect = 6.4, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSE 82
++ KP+ S + F++ E++KK +P +N V + K EKWK+M++
Sbjct: 3 REAGKPRGKTSPYGFFVKMCYEEHKKKYPSENVQVTEISKKCSEKWKTMTQ 53
>gi|389608535|dbj|BAM17877.1| high mobility group protein D [Papilio xuthus]
Length = 121
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+KPKRP SA+ +++ REQ K D+P + V + K GGE W+SM +
Sbjct: 3 DKPKRPMSAYMLWLNSAREQIKADNPGLR-VTEIAKKGGEIWRSMED 48
>gi|412985385|emb|CCO18831.1| CG4797 [Bathycoccus prasinos]
Length = 669
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K KDPN PKRP S + +F E R + K+++P + S+ V K G +WKS+++
Sbjct: 572 KKEKDPNAPKRPLSTYMIFSAEMRAKVKEENP-DFSITDVAKELGVRWKSVTD 623
>gi|410256410|gb|JAA16172.1| high mobility group box 3 [Pan troglodytes]
Length = 213
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W +++++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDS 137
>gi|242219402|ref|XP_002475481.1| predicted protein [Postia placenta Mad-698-R]
gi|220725340|gb|EED79332.1| predicted protein [Postia placenta Mad-698-R]
Length = 261
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHP 61
G++ K KDPN PKRPAS++ +F + R + KK+HP
Sbjct: 67 GKRKRKPPKDPNAPKRPASSYLIFQNDVRNELKKEHP 103
>gi|397524101|ref|XP_003832048.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pan paniscus]
Length = 130
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+ DPN PKRP S FF+F EF + K +P S+ V K GE W ++
Sbjct: 18 PAKGGKN------DPNAPKRPLSGFFLFCSEFCPKIKSTNP-GISIGDVAKKLGEMWNNL 70
Query: 81 SEA 83
+++
Sbjct: 71 NDS 73
>gi|449500530|ref|XP_002187513.2| PREDICTED: high mobility group protein B2 [Taeniopygia guttata]
Length = 145
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DPN PKRP SAFF+F E R + K +HP S+ K GE W S
Sbjct: 40 DPNAPKRPPSAFFLFCSEHRPKIKNEHP-GLSIGDTAKKLGEMWSEQS 86
>gi|444323521|ref|XP_004182401.1| hypothetical protein TBLA_0I02240 [Tetrapisispora blattae CBS
6284]
gi|387515448|emb|CCH62882.1| hypothetical protein TBLA_0I02240 [Tetrapisispora blattae CBS
6284]
Length = 94
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P + ++S + KDPN PKR SA+ F E R+ + ++P + + VGK GE+WK++
Sbjct: 4 PRETKKRSTRRKKDPNAPKRALSAYMFFANETRDIVRSENP-DVTFGQVGKILGERWKAL 62
Query: 81 S 81
S
Sbjct: 63 S 63
>gi|355705241|gb|EHH31166.1| hypothetical protein EGK_21042 [Macaca mulatta]
Length = 200
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W +++++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKLKSTNP-GISIGDVAKKLGEMWNNLNDS 137
>gi|358337868|dbj|GAA37121.2| high mobility group protein B1, partial [Clonorchis sinensis]
Length = 378
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMS 81
KD N+PK P SA+ F++ RE+++K HP +N + K EKWK MS
Sbjct: 9 VKDKNRPKHPMSAYACFVQVIREEHRKKHPNENVIFSEFSKKCAEKWKQMS 59
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KDP PKR SAFF F + FR + + +HP K V+ + K G +W+ ++
Sbjct: 99 TKDPAMPKRSWSAFFFFCDAFRSKIRNEHPDWK-VSDIAKELGRRWEECTD 148
>gi|15236607|ref|NP_194111.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
gi|75266376|sp|Q9SUP7.1|HMGB6_ARATH RecName: Full=High mobility group B protein 6; AltName:
Full=Nucleosome/chromatin assembly factor group D 06;
Short=Nucleosome/chromatin assembly factor group D 6;
AltName: Full=WRKY transcription factor 53;
Short=AtWRKY53; Short=WRKY DNA-binding protein 53
gi|4454049|emb|CAA23046.1| 98b like protein [Arabidopsis thaliana]
gi|7269229|emb|CAB81298.1| 98b like protein [Arabidopsis thaliana]
gi|18377799|gb|AAL67049.1| putative 98b protein [Arabidopsis thaliana]
gi|20465867|gb|AAM20038.1| putative 98b protein [Arabidopsis thaliana]
gi|22022506|gb|AAM83212.1| putative 98b protein [Arabidopsis thaliana]
gi|332659407|gb|AEE84807.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
Length = 456
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DP KPK P SAF V+ E R +++ NKSV V K GE+WK++S+
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALREE---NKSVVEVAKITGEEWKNLSD 296
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSE 82
DPNKPK+PAS++F+F ++ R++ ++ P N +V A+ KWK +SE
Sbjct: 375 DPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISL---KWKELSE 422
>gi|334186863|ref|NP_001190816.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
gi|332659408|gb|AEE84808.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
Length = 450
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DP KPK P SAF V+ E R +++ NKSV V K GE+WK++S+
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALREE---NKSVVEVAKITGEEWKNLSD 296
Score = 41.2 bits (95), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSE 82
DPNKPK+PAS++F+F ++ R++ ++ P N +V A+ KWK +SE
Sbjct: 369 DPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISL---KWKELSE 416
>gi|164422576|ref|XP_957906.2| hypothetical protein NCU09995 [Neurospora crassa OR74A]
gi|157069727|gb|EAA28670.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 95
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+A KDPN PKR SA+ F E RE ++++P S VGK GE+WK++S+
Sbjct: 18 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GVSFGQVGKILGERWKALSD 69
>gi|2285963|emb|CAA71143.1| high mobility group protein 2a [Homo sapiens]
Length = 200
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W +++++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDS 137
>gi|351715334|gb|EHB18253.1| High mobility group protein B3, partial [Heterocephalus glaber]
Length = 151
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP FF+F EFR + K +P S+ V K GE W ++S++
Sbjct: 40 DPNAPKRPPPGFFLFFSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDS 88
>gi|395754558|ref|XP_002832281.2| PREDICTED: high mobility group protein B3 isoform 2 [Pongo abelii]
Length = 199
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W +++++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDS 137
>gi|403305854|ref|XP_003943467.1| PREDICTED: high mobility group protein B3 [Saimiri boliviensis
boliviensis]
Length = 202
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W +++++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDS 137
>gi|196119855|gb|ACG69451.1| high-mobility group box 1 (predicted) [Otolemur garnettii]
Length = 155
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKR SAFF+F E+R + K +HP S+ V K GE W + +
Sbjct: 39 KDPNAPKRLPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTA 86
>gi|302497713|ref|XP_003010856.1| hypothetical protein ARB_02895 [Arthroderma benhamiae CBS 112371]
gi|291174401|gb|EFE30216.1| hypothetical protein ARB_02895 [Arthroderma benhamiae CBS 112371]
Length = 106
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K R K KDPN PKR SA+ +F E R ++++P N + VGK GE+WK++S+
Sbjct: 9 KTKRGVEKKKKDPNAPKRGLSAYMIFANEQRAAVREENP-NITFGQVGKVLGERWKALSD 67
>gi|444518919|gb|ELV12461.1| High mobility group protein B3 [Tupaia chinensis]
Length = 185
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
K GK +DPN PKRP S FF+F EF + + ++P S+ V K GE W + S++
Sbjct: 82 KGGKKKRDPNAPKRPPSGFFLFCSEFCPKIRSNNP-GISIGDVAKKLGEMWNNKSDS 137
>gi|410219302|gb|JAA06870.1| high mobility group box 3 [Pan troglodytes]
Length = 199
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W +++++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDS 137
>gi|351706443|gb|EHB09362.1| High mobility group protein B3 [Heterocephalus glaber]
Length = 226
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K P ++ V K GE W ++S++
Sbjct: 108 DPNAPKRPPSGFFLFCSEFRPKIKSTKP-GITIGDVAKKLGEMWNNLSDS 156
>gi|296236643|ref|XP_002763412.1| PREDICTED: high mobility group protein B3-like [Callithrix jacchus]
Length = 203
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W +++++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDS 137
>gi|167773205|gb|ABZ92037.1| high-mobility group box 3 [synthetic construct]
Length = 198
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W +++++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDS 137
>gi|109132602|ref|XP_001091672.1| PREDICTED: high mobility group protein B3-like isoform 3 [Macaca
mulatta]
gi|109132606|ref|XP_001091441.1| PREDICTED: high mobility group protein B3-like isoform 1 [Macaca
mulatta]
gi|402911729|ref|XP_003918461.1| PREDICTED: high mobility group protein B3 isoform 1 [Papio anubis]
gi|402911731|ref|XP_003918462.1| PREDICTED: high mobility group protein B3 isoform 2 [Papio anubis]
Length = 201
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W +++++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDS 137
>gi|71143137|ref|NP_005333.2| high mobility group protein B3 [Homo sapiens]
gi|426397735|ref|XP_004065062.1| PREDICTED: high mobility group protein B3 isoform 1 [Gorilla
gorilla gorilla]
gi|426397739|ref|XP_004065064.1| PREDICTED: high mobility group protein B3 isoform 3 [Gorilla
gorilla gorilla]
gi|85701353|sp|O15347.4|HMGB3_HUMAN RecName: Full=High mobility group protein B3; AltName: Full=High
mobility group protein 2a; Short=HMG-2a; AltName:
Full=High mobility group protein 4; Short=HMG-4
gi|47124341|gb|AAH70482.1| HMGB3 protein [Homo sapiens]
gi|117645316|emb|CAL38124.1| hypothetical protein [synthetic construct]
gi|117646384|emb|CAL38659.1| hypothetical protein [synthetic construct]
gi|119619803|gb|EAW99397.1| high-mobility group box 3, isoform CRA_a [Homo sapiens]
gi|410351655|gb|JAA42431.1| high mobility group box 3 [Pan troglodytes]
gi|410351657|gb|JAA42432.1| high mobility group box 3 [Pan troglodytes]
Length = 200
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W +++++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDS 137
>gi|195977121|gb|ACG63669.1| high-mobility group box 1 (predicted) [Otolemur garnettii]
Length = 227
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +H + S V K GE W
Sbjct: 91 KDPNAPKRPPSAFFLFCSEYRPKIKGEH--HLSTGDVAKKLGEMW 133
>gi|195381983|ref|XP_002049712.1| GJ20604 [Drosophila virilis]
gi|194144509|gb|EDW60905.1| GJ20604 [Drosophila virilis]
Length = 111
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
++PKRP SA+ +++ E REQ KK++P +K V + K GGE W+ + +
Sbjct: 4 DRPKRPLSAYMLWLNENREQIKKENPGSK-VTDIAKRGGELWRGLKD 49
>gi|388582419|gb|EIM22724.1| hypothetical protein WALSEDRAFT_53977 [Wallemia sebi CBS 633.66]
Length = 137
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 17 VNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEK 76
+ KP +K+ K KD N PKR SA+ +E R + KK++P N S VGK G K
Sbjct: 4 ADTKPRANTKKAAKPKKDENAPKRALSAYMYMSQEHRAEVKKENP-NISFGEVGKVLGAK 62
Query: 77 WKSMS 81
WK MS
Sbjct: 63 WKEMS 67
>gi|390600779|gb|EIN10173.1| HMG-box [Punctularia strigosozonata HHB-11173 SS5]
Length = 195
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH---PKNKSVAAVGKAGGEKWKSMSE 82
RK KDPN PKRPAS++ +F R++ KK++ P N+ +A + ++W MSE
Sbjct: 85 RKRQTKVKDPNAPKRPASSYLLFQNAVRQEIKKENPSLPNNELLALI----SQRWAGMSE 140
>gi|344235657|gb|EGV91760.1| hypothetical protein I79_006916 [Cricetulus griseus]
Length = 139
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKRP SAFF+F E+R + K HP S+ V K GE W + +
Sbjct: 16 KDPNAPKRPPSAFFLFCSEYRPK-TKGHP-GLSIGDVAKKLGETWSNTA 62
>gi|332254661|ref|XP_003276450.1| PREDICTED: high mobility group protein B4 [Nomascus leucogenys]
Length = 189
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
G++ + +DP P+RP S+F +F ++ Q K+++P N SV V KA GE W + ++
Sbjct: 79 VGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGEMWSTTTD 136
>gi|386783721|gb|AFJ24755.1| high mobility group-2 [Schmidtea mediterranea]
Length = 192
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
N+KP+K K+ + AKDPNKPK P +AFF F E R+ K+ +P+ K V + K G+ W
Sbjct: 81 NRKPSK---KAKREAKDPNKPKAPLTAFFFFSNEHRQTVKEKNPEFK-VGDIAKVLGKMW 136
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSE 82
KP SA+ ++ + RE+YKK +P K + + K EKWK++S+
Sbjct: 5 KPSGAKSAYIIYTQAVREEYKKKNPDGKVNFTEISKIASEKWKNISD 51
>gi|351712970|gb|EHB15889.1| FACT complex subunit SSRP1 [Heterocephalus glaber]
Length = 677
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
K + + AK++ + K K + K KDP+ P++P SA+ +++ RE K +HP
Sbjct: 514 KEQKRLKKAKMAKDPKGHKKTVEV-KKGKDPSVPEQPLSAYVLWLNASREMIKSEHP-GI 571
Query: 65 SVAAVGKAGGEKWKSMSEAV 84
S+A + K GE WK MS+ +
Sbjct: 572 SIANLSKKAGEIWKGMSKTM 591
>gi|224058355|ref|XP_002299486.1| high mobility group family [Populus trichocarpa]
gi|222846744|gb|EEE84291.1| high mobility group family [Populus trichocarpa]
Length = 498
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DP KPK P SAFF+F E R + NK+V V K GE+WK+M+E
Sbjct: 295 DPLKPKHPLSAFFLFSNERRAALLAE---NKNVLEVAKIAGEEWKNMTE 340
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
DPNKPK+PAS+F +F +E R+ +HP S KWK +
Sbjct: 420 DPNKPKKPASSFLLFSKETRKSLVHEHPGINSSTLTAMISV-KWKEL 465
>gi|361127235|gb|EHK99210.1| putative Non-histone chromosomal protein 6 [Glarea lozoyensis
74030]
Length = 100
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
+K K +++ K KDPN PKR SA+ F E RE ++++P S VGK GE+WK
Sbjct: 4 EKAPKRAKRTEKKKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKVLGERWK 62
Query: 79 SMSEA 83
++S+
Sbjct: 63 ALSDT 67
>gi|440298630|gb|ELP91261.1| HMG (high mobility group) box domain containing protein, partial
[Entamoeba invadens IP1]
Length = 214
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 22 AKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
+ G+ +DPN PK+P + + +F+ E RE++++ P+ K + + K E W+ M
Sbjct: 102 SSVGQSFAITKQDPNLPKKPMTPYLMFLNEHREEFREKFPELK-ITEIAKKAAEIWRDMK 160
Query: 82 E 82
E
Sbjct: 161 E 161
>gi|346324407|gb|EGX94004.1| nucleosome binding protein [Cordyceps militaris CM01]
Length = 96
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+A KDPN PKR SA+ F E R+ ++++P S VGK GE+WK++SE
Sbjct: 18 RAKKDPNAPKRGLSAYMFFANEQRDNVREENP-GVSFGQVGKILGERWKALSE 69
>gi|427787117|gb|JAA59010.1| Putative dorsal switch protein 1 [Rhipicephalus pulchellus]
Length = 208
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 12 NAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGK 71
+ +++ K P K K AKDPN PKRP SAFF F + R ++++P + SV V K
Sbjct: 70 DTEMADYKPPKGDKSKKRKRAKDPNAPKRPLSAFFWFCNDERPNVRQENP-DSSVGEVAK 128
Query: 72 AGGEKWKSMSEAV 84
G +W + + V
Sbjct: 129 ELGRRWNEVGDDV 141
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSE 82
+KP+ SA+ F++ RE++KK HP +N A K E+WK+MS+
Sbjct: 5 DKPRGRMSAYAFFVQTCREEHKKKHPNENVVFAEFSKKCAERWKTMSD 52
>gi|309265997|ref|XP_003086707.1| PREDICTED: uncharacterized protein LOC667284 [Mus musculus]
Length = 433
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F + + K +HP + S+ V K GE W
Sbjct: 89 KDPNAPKRPPSAFFLFYSVYYPKIKGEHP-DLSIGDVAKKLGEMW 132
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ FM+ R+++KK HP + + + K E+WK+MS
Sbjct: 3 DPKKPRGKMSSYAFFMQTCRKEHKKKHPDASVNFSEFSKKCSERWKTMS 51
>gi|400599237|gb|EJP66941.1| HMG box protein [Beauveria bassiana ARSEF 2860]
Length = 96
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+A KDPN PKR SA+ F E RE ++++P S VGK GE+WK++S+
Sbjct: 18 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GVSFGQVGKILGERWKALSD 69
>gi|336373128|gb|EGO01466.1| hypothetical protein SERLA73DRAFT_131740 [Serpula lacrymans var.
lacrymans S7.3]
Length = 165
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
RK KDPN PKRPASA+ +F E R + K+ +P+ + + G +W SMS+
Sbjct: 84 RKRVTKPKDPNAPKRPASAYILFQNEVRAKLKEQNPELPQ-SELLSLIGRRWTSMSQ 139
>gi|327296079|ref|XP_003232734.1| non-histone chromosomal protein 6 [Trichophyton rubrum CBS
118892]
gi|326465045|gb|EGD90498.1| non-histone chromosomal protein 6 [Trichophyton rubrum CBS
118892]
Length = 102
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KDPN PKR SA+ +F E R ++++P N + VGK GE+WK++S+
Sbjct: 20 KDPNAPKRGLSAYMIFANEQRAAVREENP-NITFGQVGKVLGERWKALSD 68
>gi|46105649|ref|XP_380561.1| hypothetical protein FG00385.1 [Gibberella zeae PH-1]
gi|110287687|sp|Q4IQX3.1|NHP6_GIBZE RecName: Full=Non-histone chromosomal protein 6
gi|408400690|gb|EKJ79767.1| hypothetical protein FPSE_00047 [Fusarium pseudograminearum
CS3096]
Length = 101
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+A KDPN PKR SA+ F E RE ++++P S VGK GE+WK+++E
Sbjct: 16 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKALNE 67
>gi|52345682|ref|NP_001004888.1| high mobility group box 3 [Xenopus (Silurana) tropicalis]
gi|49522962|gb|AAH75290.1| MGC88931 protein [Xenopus (Silurana) tropicalis]
gi|89267024|emb|CAJ81774.1| high-mobility group box 3 [Xenopus (Silurana) tropicalis]
Length = 202
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLND 136
>gi|344237192|gb|EGV93295.1| High mobility group protein B1 [Cricetulus griseus]
Length = 203
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+ + K +HP S+ V K GE W
Sbjct: 78 KDPNAPKRPPSAFFLFCSEYCPKIKGEHP-GLSIGDVAKKLGELW 121
>gi|402588158|gb|EJW82092.1| hypothetical protein WUBG_06999, partial [Wuchereria bancrofti]
Length = 97
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKR SAFF++M E R++ KK SV V KA G +W +M++
Sbjct: 19 DPNAPKRAMSAFFIWMNENRDRIKK---PGMSVGDVAKAAGIEWAAMTD 64
>gi|354470970|ref|XP_003497717.1| PREDICTED: high mobility group protein B1-like [Cricetulus griseus]
Length = 215
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+ + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYCPKIKGEHP-GLSIGDVAKKLGELW 133
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|444729048|gb|ELW69479.1| High mobility group protein B1 [Tupaia chinensis]
Length = 172
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 24/32 (75%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHP 61
K +KDPN PKRP SAFF+F E+R + K DHP
Sbjct: 75 KKSKDPNAPKRPPSAFFLFSSEYRPKIKGDHP 106
>gi|74628491|sp|Q7S045.1|NHP6_NEUCR RecName: Full=Non-histone chromosomal protein 6
gi|336464617|gb|EGO52857.1| Non-histone chromosomal protein 6 [Neurospora tetrasperma FGSC
2508]
gi|350296712|gb|EGZ77689.1| Non-histone chromosomal protein 6 [Neurospora tetrasperma FGSC
2509]
Length = 103
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+A KDPN PKR SA+ F E RE ++++P S VGK GE+WK++S+
Sbjct: 18 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GVSFGQVGKILGERWKALSD 69
>gi|302926833|ref|XP_003054372.1| HMG box-containing protein [Nectria haematococca mpVI 77-13-4]
gi|256735313|gb|EEU48659.1| HMG box-containing protein [Nectria haematococca mpVI 77-13-4]
Length = 101
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
K KA +K GK KDPN PKR SA+ F E RE ++++P S VGK GE+WK+
Sbjct: 8 KRGKAVKKRGK--KDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKA 64
Query: 80 MSE 82
++E
Sbjct: 65 LNE 67
>gi|82658290|ref|NP_001032501.1| high mobility group protein B2 [Danio rerio]
gi|81294190|gb|AAI07992.1| Zgc:123215 [Danio rerio]
Length = 213
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DPN PKRP SAFFVF + R + K D+P S+ + K GE W +S
Sbjct: 91 DPNAPKRPPSAFFVFCSDHRPKVKGDNP-GISIGDIAKKLGEMWSKLS 137
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEAVSG 86
KDPNKP+ S++ F++ RE++KK +P + + K E+W++MS G
Sbjct: 3 KDPNKPRGKTSSYAFFVQTCREEHKKKNPGTSVNFSEFSKKCSERWRTMSSKEKG 57
>gi|186701221|gb|ACC91248.1| high mobility group HMG1/2 family protein [Arabidopsis halleri]
Length = 456
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DP KPK P SAF V+ E R ++D +KSV V K GE+WK++S+
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALRED---SKSVVEVAKITGEEWKNLSD 296
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSE 82
DPNKPK+PAS++F+F ++ R++ ++ P N +V A+ KWK + E
Sbjct: 375 DPNKPKKPASSYFLFSKDERKRLIEERPGTNNSTVTALISV---KWKELGE 422
>gi|148701877|gb|EDL33824.1| mCG140646 [Mus musculus]
Length = 207
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKRP SAFF+F E+ + K +HP V V K GE W + +
Sbjct: 91 KDPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLCVGDVAKKLGELWNNTA 138
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|444725503|gb|ELW66067.1| Trem-like transcript 1 protein [Tupaia chinensis]
Length = 668
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKR S FF+F EFR + K +P S+ V K GE W ++S++
Sbjct: 586 DPNAPKRRPSVFFLFCSEFRLKIKSTNP-GISIGDVAKKLGEMWNNLSDS 634
>gi|342319487|gb|EGU11435.1| Non-histone chromosomal protein [Rhodotorula glutinis ATCC
204091]
Length = 142
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHP------KNKSVAAVGKAGGEKWKSMSE 82
G+A KDPN PKRP SA+ F ++ R K+++P +S+ +GK G KWK + E
Sbjct: 16 GRAKKDPNAPKRPLSAYMHFSQDQRSVVKEENPDVTFVGHCESIGEIGKILGAKWKELPE 75
>gi|324526583|gb|ADY48692.1| High mobility group protein 1.2, partial [Ascaris suum]
Length = 248
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
RK + KDPN PKR SAFF F + R + ++ HP+ K V V + G WK++S+
Sbjct: 125 RKRKRVKKDPNAPKRALSAFFFFSHDKRPEVQQQHPEWK-VGQVAQELGRYWKALSD 180
>gi|67524855|ref|XP_660489.1| hypothetical protein AN2885.2 [Aspergillus nidulans FGSC A4]
gi|74597086|sp|Q5B995.1|NHP6_EMENI RecName: Full=Non-histone chromosomal protein 6
gi|40744280|gb|EAA63456.1| hypothetical protein AN2885.2 [Aspergillus nidulans FGSC A4]
gi|259486178|tpe|CBF83812.1| TPA: Non-histone chromosomal protein 6
[Source:UniProtKB/Swiss-Prot;Acc:Q5B995] [Aspergillus
nidulans FGSC A4]
Length = 106
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 22 AKAGRKSG-KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
KA R++G + KDPN PKR SA+ F + R++ ++++P S VGK GEKWKS+
Sbjct: 10 TKATRETGGRKKKDPNAPKRGLSAYMFFANDNRDKVREENP-GISFGQVGKMLGEKWKSL 68
Query: 81 SE 82
S+
Sbjct: 69 SD 70
>gi|326475470|gb|EGD99479.1| nucleosome binding protein [Trichophyton tonsurans CBS 112818]
Length = 102
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KDPN PKR SA+ +F E R ++++P N + VGK GE+WK++S+
Sbjct: 20 KDPNAPKRGLSAYMIFANEQRAAVREENP-NITFGQVGKVLGERWKALSD 68
>gi|145541886|ref|XP_001456631.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124424443|emb|CAK89234.1| unnamed protein product [Paramecium tetraurelia]
Length = 235
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K +DPN PK+P + FF+F +++RE+ +P+ K + + + G KW SMSE
Sbjct: 43 KKERDPNAPKKPLTPFFLFNQKYREKVVDRNPEIK-LTQISQMAGNKWSSMSE 94
>gi|395856570|ref|XP_003800699.1| PREDICTED: high mobility group protein B1-like [Otolemur
garnettii]
Length = 161
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKR SAFF+F E+R + K +HP S+ V K GE W + +
Sbjct: 39 KDPNAPKRLPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTA 86
>gi|3551257|dbj|BAA32827.1| 98b [Daucus carota]
Length = 502
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
P KPK P SAFF+FM E R + K+V VGK GE+WK+M+E
Sbjct: 287 PLKPKHPVSAFFLFMNERRADLVAEK---KNVLEVGKITGEEWKNMTE 331
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
M+ K K T N + K+ + +K K DPNKPKRPAS+F +F +E R+ ++
Sbjct: 382 MQLLKKKEKTENL-IKKTKEERQKKQKGEKKIVDPNKPKRPASSFLLFSKEARKTISEER 440
Query: 61 P--KNKSVAAVGKAGGEKWKSMS 81
P N ++ A+ KWK +S
Sbjct: 441 PGINNSTLNALISV---KWKEIS 460
>gi|358379174|gb|EHK16855.1| hypothetical protein TRIVIDRAFT_217092 [Trichoderma virens
Gv29-8]
Length = 102
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 14 KLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAG 73
K++ +K+ AK G K + KDPN PKR SA+ F E RE ++++P S VGK
Sbjct: 3 KVAASKRGAKDGGKK-RTKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLL 60
Query: 74 GEKWKSMSE 82
GE+WK++++
Sbjct: 61 GERWKALND 69
>gi|444720594|gb|ELW61376.1| High mobility group protein B3 [Tupaia chinensis]
Length = 124
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 13/63 (20%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK------SVAAVGKAGGEKWKSM 80
K GK KD N PKRP S FF+F EF HPK K S+ V K GE W ++
Sbjct: 8 KEGKKKKDSNAPKRPPSGFFLFFSEF-------HPKIKSSNHGISIRDVAKTLGEMWNNL 60
Query: 81 SEA 83
S++
Sbjct: 61 SDS 63
>gi|296227498|ref|XP_002759405.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 215
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
DPN PKRP SAFF+F E+R + K +HP S+ V K G+ W
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGKMW 133
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|315051466|ref|XP_003175107.1| non-histone chromosomal protein 6 [Arthroderma gypseum CBS
118893]
gi|311340422|gb|EFQ99624.1| non-histone chromosomal protein 6 [Arthroderma gypseum CBS
118893]
Length = 102
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 12/78 (15%)
Query: 5 KSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK 64
K KS TR K V KK KDPN PKR SA+ +F E R ++++P +
Sbjct: 3 KEKSTTRKTKRGVEKK-----------KKDPNAPKRGLSAYMIFANEQRASVREENP-SI 50
Query: 65 SVAAVGKAGGEKWKSMSE 82
+ VGK GE+WK++++
Sbjct: 51 TFGQVGKVLGERWKALTD 68
>gi|109490746|ref|XP_001074778.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392351213|ref|XP_003750876.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 211
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PK P SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKTPPSAFFLFCSEYRPKIKGEHP-GLSIGDVVKKLGEMW 133
>gi|29290594|emb|CAD83017.1| bM168F16.1 (novel protein similar to high-mobility group box 1
(Hmgb1)) [Mus musculus]
gi|148699130|gb|EDL31077.1| mCG49535 [Mus musculus]
Length = 208
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKR SAFF+F E+ + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRSPSAFFLFCSEYCHKIKGEHP-GLSIGVVAKKLGEMW 133
>gi|294927522|ref|XP_002779152.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|294931694|ref|XP_002779970.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239888135|gb|EER10947.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239889753|gb|EER11765.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 171
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 15 LSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKK--DHPKNKSVAAVGKA 72
L + KP G+K+ K+ +DPN PK+P +AFF+F + RE+ K+ D P K
Sbjct: 43 LGLEYKPTVHGKKTKKSVRDPNMPKKPKTAFFLFCDTEREKAKERGDGP------PTTKD 96
Query: 73 GGEKWKSMSEAV 84
E WKS + V
Sbjct: 97 MAETWKSADDDV 108
>gi|296221849|ref|XP_002756934.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 203
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KD N PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 87 KDRNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 130
>gi|444726214|gb|ELW66754.1| High mobility group protein B1 [Tupaia chinensis]
Length = 160
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
K KDPN PKRP SAF +F E+R + K +HP + V K GE W + +
Sbjct: 36 KKVKDPNAPKRPPSAFLLFCSEYRPKIKGEHP-GLFIGDVAKKLGEMWNNTA 86
>gi|449706835|gb|EMD46595.1| high mobility group (HMG) box domain containing protein, partial
[Entamoeba histolytica KU27]
Length = 76
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
PN+PKRP + +F+++ E R K++HP + + K E+WK++ E
Sbjct: 26 PNRPKRPPTPYFIYLNEHRASIKEEHP-DIRFTEISKVASEQWKALGE 72
>gi|444519462|gb|ELV12862.1| High mobility group protein B1 [Tupaia chinensis]
Length = 157
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDP+ PKRP SAFF+F E+ Q K +HP + S+ K GE W + +
Sbjct: 38 KDPSAPKRPPSAFFLFCSEYHPQIKGEHP-DISIRDAAKKLGEMWNNTA 85
>gi|291410693|ref|XP_002721624.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
Length = 215
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKR SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRTPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|47227840|emb|CAG09003.1| unnamed protein product [Tetraodon nigroviridis]
Length = 199
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
KDPN PKRP SAFF+F EFR + K ++P ++ K GE W S
Sbjct: 89 KDPNAPKRPPSAFFLFCAEFRPKVKSENP-GLTIGDTAKKLGEMWNS 134
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
KDP KP+ S++ F++ RE++KK HP + + A K E+WK+MS
Sbjct: 3 KDPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMS 52
>gi|357608070|gb|EHJ65807.1| mobility group protein 1B [Danaus plexippus]
Length = 180
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K K +KPKRP SA+ +++ REQ K ++P K V + K GGE W+SM +
Sbjct: 57 KKVKMTDKPKRPMSAYMLWLNSAREQIKSENPGLK-VTEIAKKGGEIWRSMKD 108
>gi|365759088|gb|EHN00901.1| Abf2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 185
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAV 84
PKRP SA+F+F+++ R Q+ K++P + + + K GEKW+++ +
Sbjct: 45 PKRPTSAYFLFLQDHRSQFAKENPTLRP-SEISKIAGEKWQTLKSDI 90
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 7 KSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSV 66
KSD ++ +S K+ +K+ K D PKRPA F + E R + HP +KS
Sbjct: 87 KSDIKDKYISQRKELYSEYQKAKKEFDDKLPPKRPAGPFIKYANEVRSKVFAQHP-DKSQ 145
Query: 67 AAVGKAGGEKWKSMSE 82
+ K G+KW+S+ +
Sbjct: 146 LELMKVIGDKWQSLDQ 161
>gi|401838192|gb|EJT41931.1| ABF2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 185
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAV 84
PKRP SA+F+F+++ R Q+ K++P + + + K GEKW+++ +
Sbjct: 45 PKRPTSAYFLFLQDHRSQFAKENPTLRP-SEISKIAGEKWQTLKSDI 90
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 7 KSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSV 66
KSD ++ +S K+ +K+ K D PKRPA F + E R + HP +KS
Sbjct: 87 KSDIKDKYISQRKELYSEYQKAKKEFDDKLPPKRPAGPFIKYANEVRSKVFAQHP-DKSQ 145
Query: 67 AAVGKAGGEKWKSMSE 82
+ K G+KW+S+ +
Sbjct: 146 LELMKVIGDKWQSLDQ 161
>gi|367020358|ref|XP_003659464.1| hypothetical protein MYCTH_2296547 [Myceliophthora thermophila
ATCC 42464]
gi|347006731|gb|AEO54219.1| hypothetical protein MYCTH_2296547 [Myceliophthora thermophila
ATCC 42464]
Length = 101
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 21 PAKAGRKSGKAAK-----DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGE 75
P A +SGKA K DPN PKR SA+ F E RE ++++P S VGK GE
Sbjct: 2 PKAAKGRSGKAEKKRSKKDPNAPKRGLSAYMFFANEQRENVREENP-GVSFGQVGKILGE 60
Query: 76 KWKSMSE 82
+WK++S+
Sbjct: 61 RWKALSD 67
>gi|324514253|gb|ADY45807.1| FACT complex subunit SSRP1 [Ascaris suum]
Length = 91
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K AKDPN PKR SAFF +M+E R++ KK VA V KA G +W +S+
Sbjct: 12 KKAKDPNAPKRAMSAFFFWMQENRDRLKK---PGMGVADVAKAAGAEWAKLSD 61
>gi|297302803|ref|XP_001082943.2| PREDICTED: high mobility group protein B1-like [Macaca mulatta]
Length = 169
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
M S+S R+A+ K + + KDPN PKRP S+FF+F E+R + K +H
Sbjct: 18 MLQSTSQSFLRSARYEREMKTYIPPKGETEKFKDPNVPKRPPSSFFLFCSEYRPKTKGEH 77
Query: 61 PKNKSVAAVGKAGGEKW 77
P V K GE W
Sbjct: 78 P-GLPFDDVAKNLGETW 93
>gi|62647362|ref|XP_575506.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|293346835|ref|XP_001060814.2| PREDICTED: high mobility group protein B1-like isoform 1 [Rattus
norvegicus]
Length = 214
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN KRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNALKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
>gi|301763549|ref|XP_002917185.1| PREDICTED: high mobility group protein B4-like [Ailuropoda
melanoleuca]
Length = 193
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G+K + +DP P+RP S+F +F ++ Q K+++P N SV V KA G+ W + ++A
Sbjct: 81 VGKKKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKASGKMWSATTDA 139
>gi|326499588|dbj|BAJ86105.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 538
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DP+KPK+P SA+F++ +E R + K+V +GK GE+WK M+EA
Sbjct: 330 DPSKPKQPMSAYFLYSQERRGALVAE---KKTVPEIGKITGEEWKGMTEA 376
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 5/52 (9%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSEA 83
DPN+PK+PAS+F +F +E R+Q ++ P N +++A+ KWK +S A
Sbjct: 455 DPNRPKKPASSFLLFSKEARKQLAEERPGVNNSTLSALISV---KWKDLSSA 503
>gi|195123269|ref|XP_002006130.1| GI20867 [Drosophila mojavensis]
gi|193911198|gb|EDW10065.1| GI20867 [Drosophila mojavensis]
Length = 111
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
+PKRP SA+ +++ E REQ KK++P +K V + K GGE W+ +
Sbjct: 5 RPKRPLSAYMLWLNENREQIKKENPGSK-VTDIAKRGGELWRGL 47
>gi|281349442|gb|EFB25026.1| hypothetical protein PANDA_005395 [Ailuropoda melanoleuca]
Length = 181
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G+K + +DP P+RP S+F +F ++ Q K+++P N SV V KA G+ W + ++A
Sbjct: 79 VGKKKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKASGKMWSATTDA 137
>gi|432889764|ref|XP_004075350.1| PREDICTED: high mobility group-T protein-like [Oryzias latipes]
Length = 194
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
N P K +K K KDPN PKRP SAFF+F +FR + K + P S+ K GE W
Sbjct: 76 NYVPPKGQKK--KRFKDPNAPKRPPSAFFLFCADFRPKIKSESP-GLSIGDTAKKLGEMW 132
Query: 78 KSMS 81
S S
Sbjct: 133 NSSS 136
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
KDP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 2 VKDPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 52
>gi|15237042|ref|NP_192846.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
gi|75266789|sp|Q9T012.1|HMG13_ARATH RecName: Full=High mobility group B protein 13; AltName:
Full=Nucleosome/chromatin assembly factor group D 13
gi|4850287|emb|CAB43043.1| 98b like protein [Arabidopsis thaliana]
gi|7267807|emb|CAB81209.1| 98b like protein [Arabidopsis thaliana]
gi|22136604|gb|AAM91621.1| putative 98b protein [Arabidopsis thaliana]
gi|332657570|gb|AEE82970.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
Length = 446
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DP KPK+P SA+ ++ E R K + NKSV V K GE+WK++SE
Sbjct: 242 DPLKPKQPISAYLIYANERRAALKGE---NKSVIEVAKMAGEEWKNLSE 287
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAA 68
DPNKPK+P S++F+F ++ R+ ++HP N +V A
Sbjct: 368 DPNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTA 404
>gi|432104603|gb|ELK31215.1| High mobility group protein B1 [Myotis davidii]
Length = 201
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN+PKRP SAFF+F E+ + K +HP S+ + + GE W + +
Sbjct: 90 KDPNEPKRPPSAFFLFCSEYCPKIKGEHP-GLSIGDIAEKLGEMWNNTA 137
>gi|67484144|ref|XP_657292.1| high mobility group (HMG) box domain containing protein
[Entamoeba histolytica HM-1:IMSS]
gi|56474548|gb|EAL51913.1| high mobility group (HMG) box domain containing protein
[Entamoeba histolytica HM-1:IMSS]
Length = 114
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
PN+PKRP + +F+++ E R K++HP + + K E+WK++ E
Sbjct: 26 PNRPKRPPTPYFIYLNEHRASIKEEHP-DIRFTEISKVASEQWKALGE 72
>gi|407263446|ref|XP_003084790.3| PREDICTED: uncharacterized protein LOC667284 [Mus musculus]
Length = 424
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP AFF+F E+ + K +HP S+ V K GE W
Sbjct: 99 KDPNAPKRPPLAFFLFYSEYYPKIKGEHP-GLSIGDVAKKLGEMW 142
>gi|342874398|gb|EGU76412.1| hypothetical protein FOXB_13090 [Fusarium oxysporum Fo5176]
Length = 102
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K+ + KDPN PKR SA+ F E RE ++++P S VGK GE+WK+++E
Sbjct: 14 KTKRGKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKALNE 68
>gi|301097589|ref|XP_002897889.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262106637|gb|EEY64689.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 210
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P+ K + KDPN PKR SA+F F + R++ + ++P NK + + EKW+++
Sbjct: 100 PSFESTKGSRKKKDPNAPKRALSAYFFFCNDIRQEVRDENP-NKKITEIATLLAEKWRAL 158
Query: 81 SE 82
+
Sbjct: 159 PD 160
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KD N PKR SAF F + R+ KK+ P + + G +WK +S+
Sbjct: 24 KDKNAPKRALSAFMFFSNDIRDTVKKEMP-DLQFLEISSEIGRRWKQISD 72
>gi|343427561|emb|CBQ71088.1| probable NHP6B-nonhistone chromosomal protein [Sporisorium
reilianum SRZ2]
Length = 99
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+++ K+ KDP PKRP SA+ F ++ RE+ K +P+ + VG+ G KW MS+A
Sbjct: 16 KRTTKSKKDPAAPKRPLSAYMFFSQDHRERVKTANPE-AGFSDVGRLLGAKWNEMSDA 72
>gi|159478601|ref|XP_001697391.1| high mobility group protein [Chlamydomonas reinhardtii]
gi|158274549|gb|EDP00331.1| high mobility group protein [Chlamydomonas reinhardtii]
Length = 99
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PK+P A+ F +E REQ K D+P+ SV +G+ GE WK +
Sbjct: 18 DPNAPKKPMGAYMWFCKEMREQVKADNPEF-SVTDIGRRLGELWKECED 65
>gi|451847653|gb|EMD60960.1| hypothetical protein COCSADRAFT_98214 [Cochliobolus sativus
ND90Pr]
Length = 106
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKR SA+ F E RE+ ++D+P K VGK GEKWK+++E
Sbjct: 24 DPNAPKRGLSAYMFFANEQREKVREDNPGIK-FGEVGKLLGEKWKALNE 71
>gi|444518100|gb|ELV11958.1| High mobility group protein B1 [Tupaia chinensis]
Length = 162
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
PN PKRP SAFF+F E+R + K +HP + S+ V K GE W
Sbjct: 92 PNVPKRPPSAFFLFCSEYRPKIKGEHP-DLSIGDVEKKLGEVW 133
>gi|443899697|dbj|GAC77026.1| isocitrate dehydrogenase, alpha subunit [Pseudozyma antarctica
T-34]
Length = 308
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KK +K ++ K +DP+ PKRP SA+ +F E R++ +K HP ++V + E WK
Sbjct: 211 KKLSKLQKRKEKRLRDPDAPKRPPSAYLLFQNEVRQEIRKKHP-GLPYSSVLRKVSEAWK 269
Query: 79 SMSE 82
+++
Sbjct: 270 ELTD 273
>gi|355762621|gb|EHH62030.1| hypothetical protein EGM_20207 [Macaca fascicularis]
Length = 201
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W +++++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVPKKLGEMWNNLNDS 137
>gi|302652822|ref|XP_003018251.1| hypothetical protein TRV_07738 [Trichophyton verrucosum HKI 0517]
gi|291181876|gb|EFE37606.1| hypothetical protein TRV_07738 [Trichophyton verrucosum HKI 0517]
Length = 132
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKR SA+ +F E R ++++P N + VGK GE+WK++S+
Sbjct: 60 DPNAPKRGLSAYMIFANEQRAAVREENP-NITFGQVGKVLGERWKALSD 107
>gi|444706336|gb|ELW47678.1| Leiomodin-1 [Tupaia chinensis]
Length = 823
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDP PKRP SAFF+F E+ + K +HP S+ V K GE W
Sbjct: 90 KDPKAPKRPPSAFFLFCSEYCPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ +E+++K HP+ + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCKEEHRKKHPEAPVNFSEFSKKCSERWKTMS 53
>gi|3600053|gb|AAC35540.1| contains similarity to HMG (high mobility group) box (Pfam:
HMG_box.hmm, scores: 70.67, 53.09 and 80.15)
[Arabidopsis thaliana]
Length = 401
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DP KPK+P SA+ ++ E R K + NKSV V K GE+WK++SE
Sbjct: 254 DPLKPKQPISAYLIYANERRAALKGE---NKSVIEVAKMAGEEWKNLSE 299
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAA 68
DPNKPK+P S++F+F ++ R+ ++HP N +V A
Sbjct: 323 DPNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTA 359
>gi|45935025|gb|AAS79547.1| At4g11080 [Arabidopsis thaliana]
gi|46367464|emb|CAG25858.1| hypothetical protein [Arabidopsis thaliana]
Length = 450
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DP KPK+P SA+ ++ E R K + NKSV V K GE+WK++SE
Sbjct: 246 DPLKPKQPISAYLIYANERRAALKGE---NKSVIEVAKITGEEWKNLSE 291
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAA 68
DPNKPK+P S++F+F ++ R+ ++HP N +V A
Sbjct: 372 DPNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTA 408
>gi|320585897|gb|EFW98576.1| nucleosome-binding protein [Grosmannia clavigera kw1407]
Length = 94
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KDPN PKR SA+ F E RE + ++P S VGK GE+WK+++E
Sbjct: 20 KDPNAPKRGLSAYMFFANEQRENVRDENP-GISFGQVGKILGERWKALNE 68
>gi|156837652|ref|XP_001642846.1| hypothetical protein Kpol_376p1 [Vanderwaltozyma polyspora DSM
70294]
gi|156113421|gb|EDO14988.1| hypothetical protein Kpol_376p1 [Vanderwaltozyma polyspora DSM
70294]
Length = 93
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P ++ +++ + KDPN PKR SA+ F E R+ + ++P + S VG+ GEKWK++
Sbjct: 4 PRESKKRTTRRKKDPNAPKRALSAYMFFANETRDIVRAENP-DVSFGQVGRILGEKWKAL 62
Query: 81 S 81
+
Sbjct: 63 T 63
>gi|356506416|ref|XP_003521979.1| PREDICTED: FACT complex subunit SSRP1-like [Glycine max]
Length = 614
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
+KPAK K KDPN PKR S F F + RE KK +P S VG+ GEKWK
Sbjct: 514 EKPAK---KESNKEKDPNAPKRAMSGFMFFSKLERENLKKTNP-GISFTDVGRVLGEKWK 569
Query: 79 SMS 81
+S
Sbjct: 570 KLS 572
>gi|478813|pir||S29857 nonhistone chromosomal protein HMG-1 - human
gi|184251|gb|AAA64970.1| HMG-1 [Homo sapiens]
Length = 216
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKR SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRLPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPTGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|119584724|gb|EAW64320.1| hCG26831 [Homo sapiens]
Length = 212
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKR SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRLPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPTGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|183212219|gb|ACC54772.1| high mobility group box 3 [Xenopus borealis]
Length = 152
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR K +P ++ V K GE W ++ ++
Sbjct: 97 DPNAPKRPPSGFFLFCSEFRPNIKSTNP-GITIGDVAKKLGEMWNNLGDS 145
>gi|170097113|ref|XP_001879776.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645179|gb|EDR09427.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 114
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
S K KDPNKPKR SA+ F +++R++ K ++P + VGK G KWK + E
Sbjct: 21 SRKGKKDPNKPKRALSAYMFFSQDWRDRIKAENP-DAGFGEVGKLLGAKWKELDE 74
>gi|444518140|gb|ELV11977.1| High mobility group protein B3 [Tupaia chinensis]
Length = 198
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G + + KDPN PKR S FF+F EFR + K +P S+ V K G+ W ++
Sbjct: 80 PAKGGEE--EKGKDPNAPKRRPSVFFLFCSEFRLKIKSTNP-GISIGDVAKKLGDVWNNL 136
Query: 81 SEA 83
S++
Sbjct: 137 SDS 139
>gi|336272321|ref|XP_003350917.1| hypothetical protein SMAC_04223 [Sordaria macrospora k-hell]
gi|380090684|emb|CCC04854.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 103
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+A KDPN PKR SA+ F E RE ++++P + VGK GE+WK++S+
Sbjct: 18 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GVTFGQVGKILGERWKALSD 69
>gi|229368114|gb|ACQ59037.1| High mobility group protein B1 [Anoplopoma fimbria]
Length = 206
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K + P ++ V K GE W
Sbjct: 89 KDPNAPKRPPSAFFIFCAEYRPKVKGETP-GATIGDVAKRLGEMW 132
>gi|323307721|gb|EGA60984.1| Abf2p [Saccharomyces cerevisiae FostersO]
Length = 124
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PKRP SA+F+++++ R Q+ K++P + A + K GEKW+++
Sbjct: 43 PKRPTSAYFLYLQDHRSQFVKENPTLRP-AEISKIAGEKWQNL 84
>gi|334348387|ref|XP_003342057.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B3
[Monodelphis domestica]
Length = 208
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K G KD N PK P S FF+F EFR + K +P S+ V K GE W ++S+
Sbjct: 82 KGGVGGKDSNAPKHPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSD 136
>gi|328769557|gb|EGF79601.1| hypothetical protein BATDEDRAFT_89692 [Batrachochytrium
dendrobatidis JAM81]
Length = 99
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 22 AKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
AK G K+ KDP+ PKRP SAF +F +E R + ++++P + S +GK G W+ ++
Sbjct: 13 AKRGDDKKKSRKDPDAPKRPLSAFMIFSKENRPRIREENP-DASFGDLGKLLGAAWRELN 71
Query: 82 E 82
+
Sbjct: 72 D 72
>gi|26342222|dbj|BAC34773.1| unnamed protein product [Mus musculus]
Length = 215
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKR SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRLPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|170591488|ref|XP_001900502.1| High mobility group protein 1.2 [Brugia malayi]
gi|158592114|gb|EDP30716.1| High mobility group protein 1.2, putative [Brugia malayi]
Length = 235
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
A RK + KDPN PKR SAFF F + R + ++ HP+ K V V + G WK++ E
Sbjct: 101 ALRKRKRVKKDPNAPKRALSAFFFFSHDKRPEVQQQHPEWK-VGQVAQELGRFWKALGE 158
>gi|367043490|ref|XP_003652125.1| hypothetical protein THITE_126111 [Thielavia terrestris NRRL
8126]
gi|346999387|gb|AEO65789.1| hypothetical protein THITE_126111 [Thielavia terrestris NRRL
8126]
Length = 103
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KDPN PKR SA+ F E RE ++++P S VGK GE+WK++S+
Sbjct: 19 KDPNAPKRGLSAYMFFANEQRENVREENP-GVSFGQVGKILGERWKALSD 67
>gi|332847763|ref|XP_003315517.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pan troglodytes]
gi|397485725|ref|XP_003813991.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pan paniscus]
Length = 207
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+K KDPN PKRP S FF+F EF + K +P + V K E WK++
Sbjct: 80 PAKGGKK-----KDPNAPKRPPSGFFLFCSEFCPKSKSTNP-GIPIGDVAKKLSEMWKNL 133
Query: 81 SEA 83
+++
Sbjct: 134 NDS 136
>gi|289742511|gb|ADD20003.1| high mobility group protein D [Glossina morsitans morsitans]
Length = 110
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
+KPKRP SA+ +++ REQ K+++P + V + K GGE W+SM
Sbjct: 3 DKPKRPLSAYMLWLSSAREQIKRENPGIR-VTEIAKKGGEIWRSM 46
>gi|310793467|gb|EFQ28928.1| HMG box protein [Glomerella graminicola M1.001]
Length = 103
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+A KDPN PKR SA+ F E RE ++++P S VGK GE+WK++++
Sbjct: 18 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKILGERWKALND 69
>gi|149628522|ref|XP_001521757.1| PREDICTED: high mobility group protein B2-like, partial
[Ornithorhynchus anatinus]
Length = 106
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DPN PKRP SAFF+F E R + K +HP S+ K GE W S
Sbjct: 40 DPNAPKRPPSAFFLFCSEQRPKIKSEHP-GLSIGDTAKKLGELWSEQS 86
>gi|116206850|ref|XP_001229234.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88183315|gb|EAQ90783.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 96
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 21 PAKAGRKSGKAAK------DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGG 74
P A +SGKA K DPN PKR SA+ F E R+ ++++P S VGK G
Sbjct: 2 PKAAKSRSGKAEKKTRQKKDPNAPKRGLSAYMFFANEQRDNVREENP-GVSFGQVGKILG 60
Query: 75 EKWKSMSE 82
E+WK++S+
Sbjct: 61 ERWKALSD 68
>gi|444722397|gb|ELW63094.1| High mobility group protein B1 [Tupaia chinensis]
Length = 178
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K + P S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGE-PPGLSIGDVAKKLGEMW 133
>gi|403286915|ref|XP_003934714.1| PREDICTED: high mobility group protein B1-like isoform 1 [Saimiri
boliviensis boliviensis]
gi|403286917|ref|XP_003934715.1| PREDICTED: high mobility group protein B1-like isoform 2 [Saimiri
boliviensis boliviensis]
gi|403286919|ref|XP_003934716.1| PREDICTED: high mobility group protein B1-like isoform 3 [Saimiri
boliviensis boliviensis]
gi|403286921|ref|XP_003934717.1| PREDICTED: high mobility group protein B1-like isoform 4 [Saimiri
boliviensis boliviensis]
Length = 206
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP AFF+F E+R + K ++P S+ V K GE W
Sbjct: 90 KDPNAPKRPPLAFFLFCSEYRPKIKGEYP-GLSIGDVAKKLGEMW 133
>gi|383859589|ref|XP_003705276.1| PREDICTED: FACT complex subunit Ssrp1-like [Megachile rotundata]
Length = 740
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
+D NKPKRP +AF +++ RE+ K D+P +V + K GGE W+ +
Sbjct: 544 RDANKPKRPPTAFMIWLNSNREKIKADNP-GIAVTEIAKKGGEMWREL 590
>gi|256090348|ref|XP_002581158.1| SWI/SNF-related chromatin binding protein [Schistosoma mansoni]
gi|350646061|emb|CCD59339.1| SWI/SNF-related chromatin binding protein [Schistosoma mansoni]
Length = 293
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KDP+ PKR SAFF F + FR + + +HP K V+ + K G +W+ S+
Sbjct: 94 KDPSMPKRSWSAFFFFCDAFRSKIRSEHPDWK-VSDIAKELGRRWEECSD 142
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMS 81
KD N+PK P + + F++ RE+++K HP +N + K EKWK M+
Sbjct: 3 VKDKNRPKPPMTPYACFVQVIREEHRKKHPTENVIFSEFSKKCAEKWKLMN 53
>gi|403417262|emb|CCM03962.1| predicted protein [Fibroporia radiculosa]
Length = 253
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHP---KNKSVAAVGKAGGE 75
KDPN PKRPAS++ +F + R++ K++HP N+ + + K GE
Sbjct: 93 KDPNAPKRPASSYLIFQNDVRQKLKEEHPGIANNELLTMIAKLWGE 138
>gi|307204835|gb|EFN83393.1| FACT complex subunit Ssrp1 [Harpegnathos saltator]
Length = 737
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
KD NKPKRP +AF +++ RE K D+P +V + K GGE W+ +
Sbjct: 544 KDTNKPKRPPTAFMLWLNNARESIKADNP-GIAVTEIAKKGGEMWREL 590
>gi|297813579|ref|XP_002874673.1| hypothetical protein ARALYDRAFT_489947 [Arabidopsis lyrata subsp.
lyrata]
gi|297320510|gb|EFH50932.1| hypothetical protein ARALYDRAFT_489947 [Arabidopsis lyrata subsp.
lyrata]
Length = 448
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DP KPK P SA+ ++ E R K + NKSV V K GE+WK++SE
Sbjct: 244 DPLKPKHPISAYLIYANERRAALKGE---NKSVIEVAKMTGEEWKNLSE 289
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSE 82
DPNKPK+PAS++F+F +E R+ ++HP N +V A KWK + E
Sbjct: 370 DPNKPKKPASSYFLFCKEARKSVLEEHPGINNSTVTA---HISLKWKELGE 417
>gi|357608069|gb|EHJ65806.1| hypothetical protein KGM_13851 [Danaus plexippus]
Length = 719
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 15 LSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGG 74
++++++P K KS K KD N PKRP++AF +++ E R+ D+P K V + K GG
Sbjct: 524 ITISEQPRKRKEKSKKREKDVNAPKRPSTAFMLWLSEHRKGIIDDNPGIK-VTEIAKKGG 582
Query: 75 EKWKSM 80
E W+ +
Sbjct: 583 ELWRDL 588
>gi|29825377|gb|AAO92280.1| putative HMG-like protein [Dermacentor variabilis]
Length = 208
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 20 KPAKAGR-KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KP K + K K AKDPN PKRP SAFF F + R +++ P + SV V K G +W
Sbjct: 77 KPPKGDKSKKRKRAKDPNAPKRPLSAFFWFCNDERPNVRQESP-DASVGEVAKELGRRWN 135
Query: 79 SMSEAV 84
+ + V
Sbjct: 136 EVGDDV 141
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSEA 83
+KP+ SA+ F++ RE++KK HP +N A K E+WK+MSE+
Sbjct: 5 DKPRGRMSAYAFFVQTCREEHKKKHPNENVVFAEFSKKCAERWKTMSES 53
>gi|71662243|ref|XP_818131.1| high mobility group protein [Trypanosoma cruzi strain CL Brener]
gi|70883364|gb|EAN96280.1| high mobility group protein, putative [Trypanosoma cruzi]
Length = 270
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
AKD N PKR SA+F F+ +FR K HP + SV KA G WK++S+
Sbjct: 199 AKDENAPKRSMSAYFFFVSDFR----KKHP-DLSVTETSKAAGAAWKALSD 244
>gi|358391632|gb|EHK41036.1| hypothetical protein TRIATDRAFT_259074 [Trichoderma atroviride
IMI 206040]
Length = 101
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+A KDPN PKR SA+ F E RE ++++P S VGK GE+WK++++
Sbjct: 17 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKALND 68
>gi|154284354|ref|XP_001542972.1| nucleosome binding protein [Ajellomyces capsulatus NAm1]
gi|150406613|gb|EDN02154.1| nucleosome binding protein [Ajellomyces capsulatus NAm1]
gi|240273630|gb|EER37150.1| nucleosome binding protein [Ajellomyces capsulatus H143]
gi|325087527|gb|EGC40837.1| nucleosome binding protein [Ajellomyces capsulatus H88]
Length = 102
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KDPN PKR SA+ F E RE ++++P S VGK GE+WK+++E
Sbjct: 20 KDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKVLGERWKALNE 68
>gi|222087985|gb|ACM41855.1| high mobility group box 2-like protein [Epinephelus coioides]
Length = 212
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DPN PKRP SAFFVF E R + K++ P S+ K GE W + S
Sbjct: 87 DPNAPKRPPSAFFVFCSEHRPRIKEECP-GISIGDTAKKLGELWSTQS 133
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMS 81
NKP+ S++ F+ + RE++K+ HP + A K E+WK+MS
Sbjct: 1 NKPRGKTSSYAFFIADCREEHKRKHPGTSVGFAEFSKKCSERWKTMS 47
>gi|169869341|ref|XP_001841237.1| hypothetical protein CC1G_11400 [Coprinopsis cinerea okayama7#130]
gi|116497705|gb|EAU80600.1| hypothetical protein CC1G_11400 [Coprinopsis cinerea okayama7#130]
Length = 255
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKRPAS++ +F E R + K+ +P N + + EKWK+M++
Sbjct: 73 DPNAPKRPASSYILFQNEVRNELKRQNP-NLTNPELLTLISEKWKNMTD 120
>gi|412992276|emb|CCO19989.1| nucleosome binding protein [Bathycoccus prasinos]
Length = 94
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKR SA+F FM + R + K +P K V VGK GE W++MS++
Sbjct: 20 DPNAPKRNLSAYFFFMNDQRAKVVKANPDMK-VTEVGKKLGELWRAMSDS 68
>gi|353351504|emb|CBX36444.1| high-mobility-group-1 protein [Plecoglossus altivelis]
Length = 204
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F +FR + K + P ++ V K GE W
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKVKGETP-GPTIGDVAKKLGEMW 132
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
KDP KP+ S++ F++ RE++KK HP+ + + + K E+WK+MS
Sbjct: 3 KDPTKPRGKTSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMS 52
>gi|443920186|gb|ELU40161.1| HMG (high mobility group) box domain-containing protein
[Rhizoctonia solani AG-1 IA]
Length = 249
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 22 AKAGR--KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHP 61
+K GR K GK KDPN PKRPA+++ +F + R++ ++ HP
Sbjct: 48 SKRGRVPKEGKRVKDPNAPKRPATSYIMFQNDIRDELRRKHP 89
>gi|323332044|gb|EGA73455.1| Abf2p [Saccharomyces cerevisiae AWRI796]
Length = 139
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PKRP SA+F+++++ R Q+ K++P + A + K GEKW+++
Sbjct: 43 PKRPTSAYFLYLQDHRSQFVKENPTLRP-AEISKIAGEKWQNL 84
>gi|444526057|gb|ELV14266.1| High mobility group protein B1 [Tupaia chinensis]
Length = 166
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+ + K +HP + V K GE W
Sbjct: 78 KDPNTPKRPPSAFFLFCSEYSPKIKGEHP-GLPIGDVTKKLGEMW 121
>gi|307180072|gb|EFN68140.1| FACT complex subunit Ssrp1 [Camponotus floridanus]
Length = 739
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
KD NKPKRP +AF +++ RE K D+P +V + K GGE W+ +
Sbjct: 544 KDANKPKRPPTAFMLWLNSARESIKADNP-GINVTEIAKKGGEMWREL 590
>gi|157128637|ref|XP_001655167.1| hypothetical protein AaeL_AAEL002381 [Aedes aegypti]
gi|108882231|gb|EAT46456.1| AAEL002381-PA [Aedes aegypti]
Length = 67
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KPKRP SA+ +++ REQ KK++P K V + K GGE W++M +
Sbjct: 4 KPKRPLSAYMLWLNSAREQIKKENPGIK-VTEIAKRGGELWRAMKD 48
>gi|225706046|gb|ACO08869.1| High mobility group-T protein [Osmerus mordax]
Length = 204
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F +FR + K + P ++ V K GE W
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKVKGETP-GLTIGDVAKKLGEMW 132
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
KDP KP+ S++ F++ RE++KK HP+ + + + K E+WK+MS
Sbjct: 3 KDPTKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMS 52
>gi|225556517|gb|EEH04805.1| non-histone chromosomal protein 6 [Ajellomyces capsulatus G186AR]
Length = 102
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KDPN PKR SA+ F E RE ++++P S VGK GE+WK+++E
Sbjct: 20 KDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKVLGERWKALNE 68
>gi|6323717|ref|NP_013788.1| Abf2p [Saccharomyces cerevisiae S288c]
gi|398988|sp|Q02486.1|ABF2_YEAST RecName: Full=ARS-binding factor 2, mitochondrial; Flags:
Precursor
gi|763019|emb|CAA88797.1| Abf2p [Saccharomyces cerevisiae]
gi|2815294|emb|CAA11146.1| cisplatin-damaged DNA recognition protein CDRP1 [Saccharomyces
cerevisiae]
gi|45269826|gb|AAS56293.1| YMR072W [Saccharomyces cerevisiae]
gi|151946230|gb|EDN64461.1| ARS-binding factor [Saccharomyces cerevisiae YJM789]
gi|190408303|gb|EDV11568.1| ARS-binding factor 2, mitochondrial precursor [Saccharomyces
cerevisiae RM11-1a]
gi|207342356|gb|EDZ70142.1| YMR072Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256273496|gb|EEU08430.1| Abf2p [Saccharomyces cerevisiae JAY291]
gi|259148645|emb|CAY81890.1| Abf2p [Saccharomyces cerevisiae EC1118]
gi|285814075|tpg|DAA09970.1| TPA: Abf2p [Saccharomyces cerevisiae S288c]
gi|323303592|gb|EGA57383.1| Abf2p [Saccharomyces cerevisiae FostersB]
gi|323336275|gb|EGA77546.1| Abf2p [Saccharomyces cerevisiae Vin13]
gi|323347161|gb|EGA81436.1| Abf2p [Saccharomyces cerevisiae Lalvin QA23]
gi|323353057|gb|EGA85357.1| Abf2p [Saccharomyces cerevisiae VL3]
gi|349580353|dbj|GAA25513.1| K7_Abf2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365763798|gb|EHN05324.1| Abf2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
gi|392297232|gb|EIW08332.1| Abf2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 183
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAV 84
PKRP SA+F+++++ R Q+ K++P + A + K GEKW+++ +
Sbjct: 43 PKRPTSAYFLYLQDHRSQFVKENPTLRP-AEISKIAGEKWQNLEADI 88
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 7 KSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSV 66
++D + +S KK +K+ K + PK+PA F + E R Q HP +KS
Sbjct: 85 EADIKEKYISERKKLYSEYQKAKKEFDEKLPPKKPAGPFIKYANEVRSQVFAQHP-DKSQ 143
Query: 67 AAVGKAGGEKWKSMSEAV 84
+ K G+KW+S+ +++
Sbjct: 144 LDLMKIIGDKWQSLDQSI 161
>gi|444708344|gb|ELW49421.1| High mobility group protein B1 [Tupaia chinensis]
Length = 302
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F ++R + K+HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSDYRPKI-KEHP-GLSIGDVAKKLGEMW 132
>gi|384501419|gb|EIE91910.1| hypothetical protein RO3G_16621 [Rhizopus delemar RA 99-880]
Length = 183
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 22 AKAGRKSGKAA-----KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEK 76
K GRKS A +DPN PK P + FF++ R+ K + P N+S+ V + G+K
Sbjct: 34 VKPGRKSNNPAANKKKRDPNAPKGPGNVFFLYCRMERDNIKDEVP-NESLGEVTRLLGQK 92
Query: 77 WKSMS 81
WK+++
Sbjct: 93 WKALT 97
>gi|156369656|ref|XP_001628091.1| predicted protein [Nematostella vectensis]
gi|156215058|gb|EDO36028.1| predicted protein [Nematostella vectensis]
Length = 180
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPNKPKR SA+F F+ R+ KKD+P N S A+ K GE W M++
Sbjct: 89 DPNKPKRCLSAYFHFINLKRDDVKKDNP-NASGGALSKVLGEMWSKMTD 136
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
NKPK SA+ F+++ RE+ +++ K S+A K EKWK+MSE
Sbjct: 1 NKPKGAKSAYNFFLQDQREKLQREEGKF-SLADFSKVSAEKWKNMSE 46
>gi|332808386|ref|XP_513298.3| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B4 [Pan
troglodytes]
Length = 186
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
G++ + +DP P+RP S+F +F ++ Q K+++P N SV V KA G+ W ++++
Sbjct: 79 VGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSTVTD 136
>gi|397482786|ref|XP_003812597.1| PREDICTED: high mobility group protein B4 [Pan paniscus]
Length = 177
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
G++ + +DP P+RP S+F +F ++ Q K+++P N SV V KA G+ W ++++
Sbjct: 79 VGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSTVTD 136
>gi|444517137|gb|ELV11379.1| High mobility group protein B1 [Tupaia chinensis]
Length = 204
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DPN PKRP SAFF+F E+ + K +HP S+ V K GE W + +
Sbjct: 91 DPNAPKRPPSAFFLFCSEYCPKIKGEHP-GLSIGDVAKRLGELWNNTA 137
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP K + S++ F++ F+E++KK HP + S + K EKWK+MS
Sbjct: 5 DPKKRRSIMSSYAFFVQTFQEEHKKQHPDASVSFSEFPKKCSEKWKAMS 53
>gi|151301198|ref|NP_001093087.1| mobility group protein 1B [Bombyx mori]
gi|95102634|gb|ABF51255.1| mobility group protein 1B [Bombyx mori]
Length = 119
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
+KPKRP SA+ +++ REQ K ++P + V + K GGE WKSM
Sbjct: 3 DKPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSM 46
>gi|325303836|tpg|DAA34592.1| TPA_exp: putative HMG-like protein [Amblyomma variegatum]
Length = 145
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 12 NAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGK 71
+++++ K P K K AKDPN PKRP SAFF F + R ++++P + SV V K
Sbjct: 70 DSEMADYKPPKGDKSKKRKRAKDPNAPKRPLSAFFWFCNDERPNVRQENP-DASVGEVAK 128
Query: 72 AGGEKWKSMSEAVS 85
G +W + V
Sbjct: 129 ELGRRWNEGGDDVQ 142
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSE 82
+KP+ SA+ F++ RE++KK HP +N A K E+WK+MSE
Sbjct: 5 DKPRGRMSAYAFFVQTCREEHKKKHPNENVVFAEFSKKCAERWKTMSE 52
>gi|226372550|gb|ACO51900.1| High mobility group protein B2 [Rana catesbeiana]
Length = 212
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
DPN PKRP SAFF+F E R Q K D P S+ K GE W
Sbjct: 92 DPNAPKRPPSAFFLFCSENRPQIKNDTP-GLSIGDTAKKLGELW 134
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
DPNKP+ S++ F++ RE++KK HP + S A K E+WK+MS
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVSFAEFSKKCSERWKTMS 53
>gi|71416266|ref|XP_810170.1| high mobility group protein [Trypanosoma cruzi strain CL Brener]
gi|70874664|gb|EAN88319.1| high mobility group protein, putative [Trypanosoma cruzi]
Length = 270
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAV 84
AKD N PKR SA+F F+ +FR K HP + SV KA G WK +S+ +
Sbjct: 199 AKDENAPKRSMSAYFFFVSDFR----KKHP-DLSVTETSKAAGAAWKELSDEM 246
>gi|402583047|gb|EJW76991.1| hypothetical protein WUBG_12099 [Wuchereria bancrofti]
Length = 170
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
A RK + KDPN PKR SAFF F + R + ++ HP+ K V V + G WK++ E
Sbjct: 83 ALRKRKRVKKDPNAPKRALSAFFFFSHDKRPEVQQQHPEWK-VGQVAQELGRFWKALGE 140
>gi|441669023|ref|XP_004092092.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
Length = 204
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
KDPN PKRP AFF+F E+R + K +HP S+ V K E W + + A
Sbjct: 89 KDPNAPKRPPLAFFLFCSEYRPKIKGEHP-GLSIDDVVKKLAEMWNNTAAA 138
>gi|303289076|ref|XP_003063826.1| histone chaperone [Micromonas pusilla CCMP1545]
gi|226454894|gb|EEH52199.1| histone chaperone [Micromonas pusilla CCMP1545]
Length = 657
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DPN PKRP S++ +F E R + ++ P S+ +GKA G KWK M+
Sbjct: 553 DPNAPKRPLSSYMIFAGENRGKLVEETP-GMSIGEIGKALGAKWKEMT 599
>gi|148226156|ref|NP_001084164.1| FACT complex subunit SSRP1 [Xenopus laevis]
gi|82175412|sp|Q9W602.1|SSRP1_XENLA RecName: Full=FACT complex subunit SSRP1; AltName: Full=DNA
unwinding factor 87 kDa subunit; Short=DUF87; AltName:
Full=Facilitates chromatin transcription complex subunit
ssrp1; AltName: Full=Structure-specific recognition
protein 1
gi|4586285|dbj|BAA76333.1| DUF87 [Xenopus laevis]
Length = 693
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP K + K KDP PKRP SA+ +++ RE+ K ++P S+ + K GE WK
Sbjct: 524 KKPRK--KPEAKKTKDPGAPKRPMSAYMLWLNASREKIKSENP-GISITDLSKKAGEIWK 580
Query: 79 SMS 81
+MS
Sbjct: 581 NMS 583
>gi|170575732|ref|XP_001893362.1| high mobility group protein [Brugia malayi]
gi|312082913|ref|XP_003143642.1| high mobility group protein [Loa loa]
gi|158600692|gb|EDP37804.1| high mobility group protein [Brugia malayi]
gi|393906921|gb|EJD74451.1| high mobility group protein, variant [Loa loa]
Length = 90
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKR SAFF++M E R++ KK SV V KA G +W +M++
Sbjct: 19 DPNAPKRAMSAFFIWMNENRDRIKK---PGMSVGDVAKAAGIEWAAMTD 64
>gi|97976795|tpe|CAJ29302.1| TPA: putative high mobility group B3 protein [Schistosoma mansoni]
Length = 246
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KDP+ PKR SAFF F + FR + + +HP K V+ + K G +W+ S+
Sbjct: 94 KDPSMPKRSWSAFFFFCDAFRSKIRSEHPDWK-VSDIAKELGRRWEECSD 142
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMS 81
KD N+PK P + + F++ RE+++K HP +N + K EKWK M+
Sbjct: 3 VKDKNRPKPPMTPYACFVQVIREEHRKKHPTENVIFSEFSKKCAEKWKLMN 53
>gi|367006853|ref|XP_003688157.1| hypothetical protein TPHA_0M01480 [Tetrapisispora phaffii CBS
4417]
gi|357526464|emb|CCE65723.1| hypothetical protein TPHA_0M01480 [Tetrapisispora phaffii CBS
4417]
Length = 93
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P + +++ + KDPN PKR SA+ F E R+ + ++P + S +G+ GEKW+++
Sbjct: 4 PREIKKRTHRRKKDPNAPKRAMSAYMFFANETRDIVRAENP-DVSFGQIGRLLGEKWRAL 62
Query: 81 SEAVSG 86
++ G
Sbjct: 63 TDEDKG 68
>gi|158297853|ref|XP_318023.4| AGAP004791-PA [Anopheles gambiae str. PEST]
gi|158297857|ref|XP_001689081.1| AGAP004789-PA [Anopheles gambiae str. PEST]
gi|157014526|gb|EAA13138.4| AGAP004791-PA [Anopheles gambiae str. PEST]
gi|157014528|gb|EDO63498.1| AGAP004789-PA [Anopheles gambiae str. PEST]
Length = 324
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P +K KA KD N PK P + + +M E RE ++ HP N + V K E+W +
Sbjct: 57 PKTTKKKRQKAPKDANAPKHPLTGYVRYMNEHREGVRQKHP-NLTPIEVTKIMAEEWSKL 115
Query: 81 SE 82
SE
Sbjct: 116 SE 117
>gi|444727982|gb|ELW68448.1| High mobility group protein B1 [Tupaia chinensis]
Length = 165
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
DPN PKRP SAF +F E+R + K +HP S+ V K GE W
Sbjct: 79 DPNAPKRPPSAFSLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 121
>gi|443726517|gb|ELU13637.1| hypothetical protein CAPTEDRAFT_158220 [Capitella teleta]
Length = 198
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK K K KDPN PKR SAFF F R KK P N SV V K G++W+ +
Sbjct: 79 PAKGAVKR-KRTKDPNAPKRALSAFFFFCHHERPSVKKTMP-NSSVGEVAKELGKRWEGV 136
Query: 81 SEAVSGLVL 89
++ V+
Sbjct: 137 TDRTRFEVM 145
>gi|50548527|ref|XP_501733.1| YALI0C11671p [Yarrowia lipolytica]
gi|74635076|sp|Q6CC79.1|NHP6_YARLI RecName: Full=Non-histone chromosomal protein 6
gi|49647600|emb|CAG82043.1| YALI0C11671p [Yarrowia lipolytica CLIB122]
Length = 103
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKR SA+ F + R+ + D+P + VGKA GEKWK++++A
Sbjct: 21 DPNAPKRALSAYMFFANDNRDAIRADNP-GIAFGQVGKALGEKWKTLTDA 69
>gi|403293162|ref|XP_003937591.1| PREDICTED: high mobility group protein B4 [Saimiri boliviensis
boliviensis]
Length = 254
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
G++ + +DP P+RP S+F +F ++ Q K+++P N SV V KA G+ W + ++
Sbjct: 142 VGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSATTD 199
>gi|213405987|ref|XP_002173765.1| mismatch-binding protein cmb1 [Schizosaccharomyces japonicus
yFS275]
gi|212001812|gb|EEB07472.1| mismatch-binding protein cmb1 [Schizosaccharomyces japonicus
yFS275]
Length = 316
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 22 AKAGRKSGKAAKDPNKPKRPASAFFVFMEEFRE--QYKKDH--PKNKSVAAVGKAGGEKW 77
AK +K+ K KDP++PK+P S+F F ++ R+ ++K+ P S+ K GE W
Sbjct: 141 AKGIKKNSKPIKDPSEPKKPLSSFLYFTQKLRQDPEFKQKLMGPAVYSITEFSKKAGEVW 200
Query: 78 KSMSEAV 84
KS+S+ +
Sbjct: 201 KSLSDDI 207
>gi|47124491|gb|AAH70148.1| High-mobility group box 4 [Homo sapiens]
Length = 112
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
G++ + +DP P+RP S+F +F ++ Q K+++P N SV V KA G+ W + ++
Sbjct: 5 VGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSTATD 62
>gi|7544638|gb|AAA73079.2| unknown [Saccharomyces cerevisiae]
Length = 183
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PKRP SA+F+++++ R Q+ K++P + A + K GEKW+++
Sbjct: 43 PKRPTSAYFLYLQDHRSQFVKENPTLRP-AEISKIAGEKWQNL 84
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 7 KSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSV 66
++D + +S KK +K+ K + PK+PA F + E R Q HP +KS
Sbjct: 85 EADMKEKYISERKKLYSEYQKAKKEFDEKTPPKKPAGPFIKYANEVRSQVFAQHP-DKSQ 143
Query: 67 AAVGKAGGEKWKSMSEAV 84
K G+KW+S+ +++
Sbjct: 144 LDTMKIIGDKWQSLDQSI 161
>gi|344253440|gb|EGW09544.1| High mobility group protein B1 [Cricetulus griseus]
Length = 169
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KD N PKRP SAFF+F E+ + K +HP S+ V K GEKW
Sbjct: 89 KDSNAPKRPPSAFFLFCSEYCPKIKGEHP-GLSLGDVAKKLGEKW 132
>gi|283462216|gb|ADB22402.1| dorsal switch-like hmg protein [Saccoglossus kowalevskii]
Length = 241
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 12 NAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGK 71
N ++ P + + KDP+ PKR S FF+F R + KK HP N V V K
Sbjct: 99 NTEMEKYTPPKGEKKGKKRKRKDPDAPKRNLSPFFLFCNVKRAEVKKVHP-NWGVGDVAK 157
Query: 72 AGGEKWKSMSEA 83
A GE+WK++S A
Sbjct: 158 ALGEQWKNVSAA 169
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSV-AAVGKAGGEKWKSMSE 82
+P+KPK SA+ F++ R+++KK HP V A K E+WK M++
Sbjct: 32 NPDKPKGRMSAYAFFVQSCRQEHKKQHPAESVVFAEFSKKCAERWKKMTD 81
>gi|229367846|gb|ACQ58903.1| High mobility group protein B2 [Anoplopoma fimbria]
Length = 213
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DPN PKRP SAFFVF + R + K+++P S+ + K GE W + +
Sbjct: 92 DPNAPKRPPSAFFVFCSDHRPRIKEENP-GISIGDIAKKLGEFWSTQT 138
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
KDPNKP+ S++ F+ RE++KK HP + A K E+WK+MS
Sbjct: 2 TKDPNKPRGKTSSYAFFVATCREEHKKKHPGVSVGFAEFSKKCSERWKTMS 52
>gi|148684659|gb|EDL16606.1| mCG50402 [Mus musculus]
Length = 214
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F + + K +HP + S+ V K GE W
Sbjct: 89 KDPNAPKRPPSAFFLFYSVYYPKIKGEHP-DLSIGDVAKKLGEMW 132
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ FM+ R+++KK HP + + + K E+WK+MS
Sbjct: 3 DPKKPRGKMSSYAFFMQTCRKEHKKKHPDASVNFSEFSKKCSERWKTMS 51
>gi|57232750|ref|NP_660206.2| high mobility group protein B4 [Homo sapiens]
gi|387912835|sp|Q8WW32.2|HMGB4_HUMAN RecName: Full=High mobility group protein B4
gi|189065201|dbj|BAG34924.1| unnamed protein product [Homo sapiens]
gi|208968483|dbj|BAG74080.1| high-mobility group box 4 [synthetic construct]
Length = 186
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
G++ + +DP +P+RP S+F +F ++ Q K+++P N SV V KA G+ W + ++
Sbjct: 79 VGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSTATD 136
>gi|401626897|gb|EJS44815.1| nhp6bp [Saccharomyces arboricola H-6]
Length = 99
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
K+P + +++ + KDPN PKR SA+ F E R+ + ++P + + VG+ GE+WK
Sbjct: 8 KQPKEPKKRTTRRKKDPNAPKRGLSAYMFFANETRDIVRSENP-DVTFGQVGRILGERWK 66
Query: 79 SMS 81
+++
Sbjct: 67 ALT 69
>gi|385302209|gb|EIF46351.1| nucleosome binding protein [Dekkera bruxellensis AWRI1499]
Length = 91
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
GRK + KDPN PKR SA+ F E R+ + ++P + +GK GEKWK++
Sbjct: 2 GRKGTRKKKDPNAPKRSLSAYMFFANEQRDIVRAENP-GIAFGQIGKILGEKWKALD 57
>gi|443724197|gb|ELU12309.1| hypothetical protein CAPTEDRAFT_56147, partial [Capitella teleta]
Length = 196
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+D N+PKRP SA+F+++ FR + K P NK + +A GE WK ++E
Sbjct: 94 RDKNRPKRPQSAYFLWLAGFRTRMKDKIPVNKELL---RAAGEHWKRLTEV 141
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 20 KPAKAGRKSGKAAK--DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
+P A K GK K DPN+PKRP SA+F ++ R + +K + VA K + W
Sbjct: 3 RPKGATTKGGKRKKNKDPNRPKRPTSAYFFYVAHCRAECEKRGERITRVAQWTKEISQVW 62
Query: 78 KSMS 81
+ M+
Sbjct: 63 REMT 66
>gi|444705868|gb|ELW47253.1| High mobility group protein B1 [Tupaia chinensis]
Length = 182
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+ + K+ HP + V K GE W
Sbjct: 78 KDPNAPKRPPSAFFLFCPEYHPKLKEGHP-GLIIGDVAKKLGEMW 121
>gi|451996730|gb|EMD89196.1| hypothetical protein COCHEDRAFT_1107529 [Cochliobolus
heterostrophus C5]
Length = 105
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKR SA+ F E RE+ ++D+P K VGK GEKWK++++
Sbjct: 23 DPNAPKRGLSAYMFFANEQREKVREDNPGIK-FGEVGKLLGEKWKALND 70
>gi|395857418|ref|XP_003801091.1| PREDICTED: high mobility group protein B1-like [Otolemur garnettii]
Length = 197
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+ + K +HP S+ V K G W
Sbjct: 132 KDPNAPKRPLSAFFLFCSEYCPKSKGEHP-GLSIGEVAKKLGVMW 175
>gi|296224352|ref|XP_002758030.1| PREDICTED: high mobility group protein B1-like isoform 1
[Callithrix jacchus]
gi|390474708|ref|XP_003734829.1| PREDICTED: high mobility group protein B1-like isoform 2
[Callithrix jacchus]
Length = 215
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKR S FF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRTPSVFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|312075672|ref|XP_003140521.1| high mobility group protein 1.2 [Loa loa]
gi|307764316|gb|EFO23550.1| high mobility group protein 1.2 [Loa loa]
Length = 211
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
A RK + KDPN PKR SAFF F + R + ++ HP+ K V V + G WK++ E
Sbjct: 83 ALRKRKRVKKDPNAPKRALSAFFFFSHDKRPEVQQQHPEWK-VGQVAQELGRFWKALGE 140
>gi|441639466|ref|XP_004090212.1| PREDICTED: high mobility group protein B3-like [Nomascus
leucogenys]
Length = 131
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN P+RP S FF+F EF + K +P S+ V K GE W +++++
Sbjct: 27 DPNAPQRPLSGFFLFCSEFCPEIKSTNP-GISIGDVAKKLGEMWNNLNDS 75
>gi|348680492|gb|EGZ20308.1| hypothetical protein PHYSODRAFT_285400 [Phytophthora sojae]
Length = 211
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P+ K + KDPN PKR SA+F F + R++ + ++P NK + + E+W+++
Sbjct: 96 PSFETTKGSRKKKDPNAPKRALSAYFFFCNDIRQEVRDENP-NKKITEIATLLAERWRAL 154
Query: 81 SE 82
+
Sbjct: 155 PD 156
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KD N PKR SAF F + RE KK+ P+ + + G +WK +S+
Sbjct: 20 KDKNAPKRALSAFMFFSNDIRETVKKEMPE-LAFLQISSEIGRRWKKISD 68
>gi|350409390|ref|XP_003488719.1| PREDICTED: FACT complex subunit Ssrp1-like [Bombus impatiens]
Length = 736
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
KD NKPKRP +AF +++ RE+ K ++P +V + K GGE W+ +
Sbjct: 544 KDANKPKRPPTAFMIWLNSARERIKAENP-GIAVTEIAKKGGEMWREL 590
>gi|312281655|dbj|BAJ33693.1| unnamed protein product [Thellungiella halophila]
Length = 646
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DPN PKR S F F + R+ KK HP + VGK G+KW+ MS
Sbjct: 558 DPNAPKRAMSGFMFFSQMERDNIKKTHP-GIAFGEVGKVLGDKWRQMS 604
>gi|302309760|ref|XP_002999554.1| hypothetical protein [Candida glabrata CBS 138]
gi|196049084|emb|CAR57991.1| unnamed protein product [Candida glabrata]
Length = 93
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
RK+ + KDPN PKR SA+ F E R+ + ++P + + +G+ GE+WK+++
Sbjct: 9 RKTTRRKKDPNAPKRALSAYMFFANENRDIVRSENP-DVTFGQIGRLLGERWKALT 63
>gi|157129265|ref|XP_001655340.1| high mobility group non-histone protein, putative [Aedes aegypti]
gi|157129267|ref|XP_001655341.1| high mobility group non-histone protein, putative [Aedes aegypti]
gi|157129269|ref|XP_001655342.1| high mobility group non-histone protein, putative [Aedes aegypti]
gi|157129271|ref|XP_001655343.1| high mobility group non-histone protein, putative [Aedes aegypti]
gi|94468770|gb|ABF18234.1| nucleosome-binding factor SPN POB3 subunit [Aedes aegypti]
gi|108872275|gb|EAT36500.1| AAEL011414-PC [Aedes aegypti]
gi|108872276|gb|EAT36501.1| AAEL011414-PD [Aedes aegypti]
gi|108872277|gb|EAT36502.1| AAEL011414-PA [Aedes aegypti]
gi|108872278|gb|EAT36503.1| AAEL011414-PB [Aedes aegypti]
Length = 112
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
KPKRP SA+ +++ REQ KK++P K V + K GGE W++M
Sbjct: 4 KPKRPLSAYMLWLNSAREQIKKENPGIK-VTEIAKRGGELWRAM 46
>gi|56756178|gb|AAW26264.1| SJCHGC08557 protein [Schistosoma japonicum]
Length = 177
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KDP+ PKR SAFF F + FR + + +HP K V+ + K G +W+ S+
Sbjct: 94 KDPSMPKRSWSAFFFFCDAFRSKIRSEHPDWK-VSDIAKELGRRWEECSD 142
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMS 81
KD N+PK P + F++ RE+++K HP +N + K EKWK M+
Sbjct: 3 VKDKNRPKPPMKPYACFVQVIREEHRKKHPTENVIFSEFSKKCAEKWKLMN 53
>gi|198451872|ref|XP_002137386.1| GA27181 [Drosophila pseudoobscura pseudoobscura]
gi|198131682|gb|EDY67944.1| GA27181 [Drosophila pseudoobscura pseudoobscura]
Length = 82
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 37 KPKRPASAFFVFME-EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+PKRPA ++ ++M E R++ K +HP N +V +GK GGE W+ M E
Sbjct: 4 RPKRPAPSYVMWMNVEGRQRIKMEHP-NCTVPQMGKRGGEIWRGMDE 49
>gi|195154374|ref|XP_002018097.1| GL17523 [Drosophila persimilis]
gi|390179748|ref|XP_001361671.2| GA14726 [Drosophila pseudoobscura pseudoobscura]
gi|194113893|gb|EDW35936.1| GL17523 [Drosophila persimilis]
gi|388859956|gb|EAL26250.2| GA14726 [Drosophila pseudoobscura pseudoobscura]
Length = 113
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
++PKRP SA+ +++ E RE KK++P +K V + K GGE W+ +
Sbjct: 6 DRPKRPLSAYMLWLNETRESIKKENPGSK-VTDIAKRGGELWRGL 49
>gi|444730527|gb|ELW70909.1| High mobility group protein B1 [Tupaia chinensis]
Length = 238
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP AFF+F E+R + + +HP S+ K GE W
Sbjct: 90 KDPNAPKRPPLAFFLFCSEYRPKIEGEHP-GLSIGDTAKKLGELW 133
>gi|156843619|ref|XP_001644876.1| hypothetical protein Kpol_1065p34 [Vanderwaltozyma polyspora DSM
70294]
gi|156115528|gb|EDO17018.1| hypothetical protein Kpol_1065p34 [Vanderwaltozyma polyspora DSM
70294]
Length = 93
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKR SA+ F E R+ K ++P + S VG+ GEKWK+M++
Sbjct: 17 DPNAPKRALSAYMFFANETRDIVKAENP-DVSFGQVGRILGEKWKAMTD 64
>gi|147903143|ref|NP_001079387.1| high mobility group box 2 [Xenopus laevis]
gi|80479234|gb|AAI08500.1| MGC52825 protein [Xenopus laevis]
Length = 211
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
DPN PKRP SAFF+F E R Q K + P S+ K GE+W
Sbjct: 92 DPNAPKRPPSAFFLFCSEQRPQIKSETP-GLSIGDTAKKLGERW 134
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMS 53
>gi|27370889|gb|AAH41262.1| MGC52825 protein [Xenopus laevis]
Length = 212
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
DPN PKRP SAFF+F E R Q K + P S+ K GE+W
Sbjct: 92 DPNAPKRPPSAFFLFCSEQRPQIKSETP-GLSIGDTAKKLGERW 134
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMS 53
>gi|75218951|sp|O04235.1|SSRP1_VICFA RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein 1
gi|2104679|emb|CAA66480.1| transcription factor [Vicia faba var. minor]
Length = 642
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DPN PKR S F F + RE KK +P S VG+ GEKWK++S
Sbjct: 554 DPNAPKRALSGFMFFSQMERENLKKTNP-GISFTDVGRVLGEKWKNLS 600
>gi|340713595|ref|XP_003395326.1| PREDICTED: FACT complex subunit Ssrp1-like [Bombus terrestris]
Length = 735
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
KD NKPKRP +AF +++ RE+ K ++P +V + K GGE W+ +
Sbjct: 544 KDANKPKRPPTAFMIWLNSARERIKAENP-GIAVTEIAKKGGEMWREL 590
>gi|349576469|dbj|GAA21640.1| K7_Nhp6bp [Saccharomyces cerevisiae Kyokai no. 7]
Length = 99
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
K+P + +++ + KDPN PKR SA+ F E R+ + ++P + + VG+ GEKWK
Sbjct: 8 KQPKEPKKRTTRRKKDPNAPKRGLSAYMFFANENRDIVRSENP-DVTFGQVGRILGEKWK 66
Query: 79 SMS 81
+++
Sbjct: 67 ALT 69
>gi|195145689|ref|XP_002013824.1| GL23184 [Drosophila persimilis]
gi|194102767|gb|EDW24810.1| GL23184 [Drosophila persimilis]
Length = 82
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 37 KPKRPASAFFVFME-EFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+PKRPA ++ ++M E R++ K +HP N +V +GK GGE W+ M E
Sbjct: 4 RPKRPAPSYVMWMNVEGRQRIKMEHP-NCTVPQMGKRGGEIWRGMDE 49
>gi|307105669|gb|EFN53917.1| hypothetical protein CHLNCDRAFT_136125 [Chlorella variabilis]
Length = 101
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKRP SA+ F + R + KK P + S+ VGKA G WK +S+
Sbjct: 27 DPNAPKRPLSAYMYFASDKRVEMKKSDP-SLSLGEVGKATGAAWKELSD 74
>gi|299741148|ref|XP_001834261.2| non-histone chromosomal protein 6 [Coprinopsis cinerea
okayama7#130]
gi|298404577|gb|EAU87573.2| non-histone chromosomal protein 6 [Coprinopsis cinerea
okayama7#130]
Length = 184
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+ K+ KDP KPKR SA+ F +++RE+ K ++P + VGK G KWK + E
Sbjct: 86 ASKSKKDPLKPKRALSAYMFFSQDWRERIKAENP-DAGFGEVGKLLGAKWKELDE 139
>gi|260803411|ref|XP_002596583.1| hypothetical protein BRAFLDRAFT_154496 [Branchiostoma floridae]
gi|229281842|gb|EEN52595.1| hypothetical protein BRAFLDRAFT_154496 [Branchiostoma floridae]
Length = 710
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
DPN PK+ +AF +++ R + +K++P + S+ +GK GEKW+ M
Sbjct: 543 DPNAPKKAMTAFMLWLNATRSELRKENP-DASIGEIGKIAGEKWREM 588
>gi|440896783|gb|ELR48616.1| High mobility group protein B1, partial [Bos grunniens mutus]
Length = 165
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDP+ PKR SAFF+F E+ + K DHP S+ V K GE W
Sbjct: 80 KDPSTPKRDPSAFFLFCSEYCPKVKHDHP-GLSIGDVAKKLGETW 123
>gi|402077455|gb|EJT72804.1| non-histone chromosomal protein 6 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 101
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KK AK ++ GK KDP PKR SA+ F E RE ++++P S VGK GE+WK
Sbjct: 7 KKGAKTEKRRGK--KDPLAPKRGLSAYMFFANEQRENVREENP-GVSFGQVGKILGERWK 63
Query: 79 SMSE 82
++S+
Sbjct: 64 ALSD 67
>gi|349804477|gb|AEQ17711.1| putative high mobility group protein-1 [Hymenochirus curtipes]
Length = 143
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
K KDPN PKRP SAFF+F +FR K +HP ++ V K GE W
Sbjct: 85 KKFKDPNAPKRPPSAFFLFCSDFR--IKGEHP-GLTIGDVAKKLGEMW 129
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVS 85
DP KP+ S++ F++ RE++KK + + + K E+WK+MSE S
Sbjct: 5 DPKKPRGKMSSYAYFVQTCREEHKKHPDASVNFSEFSKKCSERWKTMSEGKS 56
>gi|444729825|gb|ELW70228.1| High mobility group protein B1 [Tupaia chinensis]
Length = 141
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDP+ PKRP SAFF+F E+R + K + P + + V K GE W + +
Sbjct: 28 KDPSAPKRPPSAFFLFCSEYRPEIKGERP-GRFIGDVAKRLGEMWNNTA 75
>gi|444723313|gb|ELW63971.1| High mobility group protein B1 [Tupaia chinensis]
Length = 171
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW-KSMSEAVSGLV 88
KDPN PKRP FF+F E+R + K++ P ++ V K GE W + ++A G+V
Sbjct: 81 KDPNAPKRPPLVFFLFCSEYRPKIKREQP-GLTIDDVAKKLGEMWNNTAADAKKGVV 136
>gi|384491850|gb|EIE83046.1| hypothetical protein RO3G_07751 [Rhizopus delemar RA 99-880]
Length = 101
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+K+ ++ KDP+ PKR SA+ F ++ R K+++PK S +GK GE+WK++SE
Sbjct: 21 KKARRSKKDPSAPKRGLSAYMFFSQDQRPTVKEENPKA-SFGEIGKILGERWKALSE 76
>gi|341885015|gb|EGT40950.1| hypothetical protein CAEBREN_04053 [Caenorhabditis brenneri]
Length = 97
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVLV 90
DPN PKR SAFF +M+E RE+ KK VA V KA G +W +++ L+
Sbjct: 24 DPNAPKRAMSAFFFWMQENRERIKK---PGMGVADVAKAAGVEWGKLTDKSVSWTLI 77
>gi|325181980|emb|CCA16434.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 204
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P+ +S + KDP+ PKR SA+F F E R+ ++++P +K + + EKW+++
Sbjct: 96 PSFETTRSTRKKKDPDAPKRALSAYFFFCNEARDALRQENP-DKKITEIASLLAEKWRNL 154
Query: 81 SE 82
E
Sbjct: 155 PE 156
>gi|157832121|pdb|1NHM|A Chain A, The Structure Of The Hmg Box And Its Interaction With
Dna
gi|157832122|pdb|1NHN|A Chain A, The Structure Of The Hmg Box And Its Interaction With
Dna
Length = 81
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
N PKRP SAFF+F E+R + K +HP S+ V K GE W + +
Sbjct: 3 NAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTA 47
>gi|239606992|gb|EEQ83979.1| nucleosome binding protein [Ajellomyces dermatitidis ER-3]
Length = 105
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KDPN PKR SA+ F E R+ ++++P S VGK GE+WK+++E
Sbjct: 19 KDPNAPKRGLSAYMFFANEQRDNVREENP-GISFGQVGKVLGERWKALNE 67
>gi|297812489|ref|XP_002874128.1| hypothetical protein ARALYDRAFT_910355 [Arabidopsis lyrata subsp.
lyrata]
gi|297319965|gb|EFH50387.1| hypothetical protein ARALYDRAFT_910355 [Arabidopsis lyrata subsp.
lyrata]
Length = 171
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 22 AKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
A++ K + AKD N+P P + F +FM FR+ ++ D+ V V K G E WKSM+
Sbjct: 49 AESQAKRRRKAKDSNRP--PLTGFVIFMNGFRKSFRTDY-NGSLVKEVSKIGWEMWKSMT 105
Query: 82 E 82
E
Sbjct: 106 E 106
>gi|297665615|ref|XP_002811141.1| PREDICTED: high mobility group protein B4 [Pongo abelii]
Length = 189
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
G+ + +DP P+RP S+F +F ++ Q K+++P N SV V KA G+ W + ++
Sbjct: 79 VGKTKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSAATD 136
>gi|403222987|dbj|BAM41118.1| high-mobility-group protein [Theileria orientalis strain
Shintoku]
Length = 93
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 22 AKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSM 80
+K+ +K + KDPN PKR S++ F +E R + K++P K VA VGK G W S+
Sbjct: 6 SKSAKKGKRTKKDPNAPKRALSSYMFFAKEKRNELIKENPDLAKDVATVGKLVGAAWNSL 65
Query: 81 SEA 83
++
Sbjct: 66 DDS 68
>gi|261194046|ref|XP_002623428.1| nucleosome binding protein [Ajellomyces dermatitidis SLH14081]
gi|239588442|gb|EEQ71085.1| nucleosome binding protein [Ajellomyces dermatitidis SLH14081]
gi|327354542|gb|EGE83399.1| nonhistone chromosomal protein 6A [Ajellomyces dermatitidis ATCC
18188]
Length = 101
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KDPN PKR SA+ F E R+ ++++P S VGK GE+WK+++E
Sbjct: 19 KDPNAPKRGLSAYMFFANEQRDNVREENP-GISFGQVGKVLGERWKALNE 67
>gi|16033552|gb|AAL13284.1|AF416953_1 high mobility group protein [Naegleria fowleri]
Length = 209
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
D N PK+P +A+F+F +E RE+ KK + KS + V K GE W ++E
Sbjct: 13 DSNAPKKPKTAYFLFCDEHREEAKKKAGEGKSASEVSKILGEMWGKLTE 61
>gi|426392256|ref|XP_004062472.1| PREDICTED: putative high mobility group protein B1-like 1-like
[Gorilla gorilla gorilla]
Length = 198
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDP+ PKRP SAFF+F E+ + K +HP S+ V K GE W
Sbjct: 77 KDPSAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDVVKKLGEMW 120
>gi|429860623|gb|ELA35353.1| nucleosome binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 103
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KDPN PKR SA+ F E RE ++++P S VGK GE+WK++++
Sbjct: 21 KDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKILGERWKALND 69
>gi|407035464|gb|EKE37713.1| HMG (high mobility group) box domain containing protein [Entamoeba
nuttalli P19]
Length = 369
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KD NKPK+P +A+ +F E QYKK P K ++ +GK G +WK + E
Sbjct: 102 KDENKPKKPKNAYLLFSSEKYPQYKKQFPDLK-ISEIGKKIGVEWKELPE 150
>gi|312385331|gb|EFR29858.1| hypothetical protein AND_00899 [Anopheles darlingi]
Length = 174
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+KPKRP SA+ +++ REQ KK++P K V + K GGE W+ M +
Sbjct: 65 SKPKRPLSAYMLWLNSAREQIKKENPGIK-VTEIAKKGGELWRGMKD 110
>gi|440804471|gb|ELR25348.1| HMG (high mobility group) box domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 205
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KDPN PKR +A+ +F +E R Q K DHP VGK GE W ++ +
Sbjct: 7 KDPNAPKRAMTAYMLFSQEKRTQIKTDHP-TVGFGQVGKLLGEAWAALPD 55
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
KDPN PK+P SAFF F ++ R + K ++P + S +GK GE+W +
Sbjct: 100 KDPNAPKKPCSAFFHFSKKMRPRIKDENP-DASFGQLGKIIGEQWSKL 146
>gi|344245608|gb|EGW01712.1| High mobility group protein B1 [Cricetulus griseus]
Length = 162
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKRP SAFF+F E+ + K + P S+ K GE W S +
Sbjct: 39 KDPNAPKRPPSAFFLFCSEYHPKIKGERP-GLSIGDAAKKLGETWNSTA 86
>gi|20138433|sp|Q9UGV6.1|HMGLX_HUMAN RecName: Full=Putative high mobility group protein 1-like 10;
Short=HMG-1L10
Length = 211
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKR SAFF+F +R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRTPSAFFLFCSAYRPKIKGEHP-GLSIGDVAKKLGEMW 133
>gi|401887840|gb|EJT51817.1| nonhistone protein 6 [Trichosporon asahii var. asahii CBS 2479]
Length = 234
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSE 82
KDPN PKRP SA+ +F + RE+ ++ HP K V +V +WK + E
Sbjct: 85 KDPNAPKRPPSAYLLFQNDIREEIRQAHPGMPYKEVLSV---IANRWKDLDE 133
>gi|195489309|ref|XP_002092681.1| GE11532 [Drosophila yakuba]
gi|194178782|gb|EDW92393.1| GE11532 [Drosophila yakuba]
Length = 726
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
KD KPKR +AF +++ + RE K+D+P K V + K GGE WK +
Sbjct: 550 KDSGKPKRATTAFMLWLNDTRESIKRDNPGIK-VTEIAKKGGEMWKEL 596
>gi|118792222|ref|XP_001238271.1| AGAP012334-PA [Anopheles gambiae str. PEST]
gi|116116797|gb|EAU75768.1| AGAP012334-PA [Anopheles gambiae str. PEST]
Length = 111
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KPKRP SA+ +++ REQ KK++P K V + K GGE W+ M +
Sbjct: 4 KPKRPLSAYMLWLNSAREQIKKENPGIK-VTEIAKKGGELWRGMKD 48
>gi|110808604|gb|ABB22048.1| HMBG4 [Homo sapiens]
gi|119627858|gb|EAX07453.1| high-mobility group box 4 [Homo sapiens]
Length = 186
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
G++ + +DP P+RP S+F +F ++ Q K+++P N SV V KA G+ W + ++
Sbjct: 79 VGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSTATD 136
>gi|392879586|gb|AFM88625.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
DPN PKRP S FF+F R + +++ P S+ + K GEKW +M
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECP-GLSIGDIAKKLGEKWNAM 152
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMS 81
K A+DP KP+ +++ +F++ RE++KK HP K S K E+WK+MS
Sbjct: 16 KMARDPKKPRGRLTSYALFVQTCREEHKKKHPEKVVSFTEFSKKCSERWKTMS 68
>gi|45360483|ref|NP_988904.1| high mobility group box 2 [Xenopus (Silurana) tropicalis]
gi|38181929|gb|AAH61601.1| high-mobility group box 2 [Xenopus (Silurana) tropicalis]
Length = 212
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
DPN PKRP SAFF+F E R Q K + P S+ K GE W
Sbjct: 92 DPNAPKRPPSAFFLFCSEHRPQIKSESP-GLSIGDTAKKLGEMW 134
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMS 53
>gi|1870104|emb|CAA85042.1| NHP6B [Saccharomyces cerevisiae]
Length = 99
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
K+P + +++ + KDPN PKR SA+ F E R+ + ++P + + VG+ GE+WK
Sbjct: 8 KQPKEPKKRTTRRKKDPNAPKRRLSAYMFFANENRDIVRSENP-DVTFGQVGRILGERWK 66
Query: 79 SMS 81
+++
Sbjct: 67 ALT 69
>gi|67470045|ref|XP_650993.1| HMG box protein [Entamoeba histolytica HM-1:IMSS]
gi|56467670|gb|EAL45607.1| HMG box protein [Entamoeba histolytica HM-1:IMSS]
gi|449703510|gb|EMD43949.1| HMG (high mobility group) box domain containing protein, putative
[Entamoeba histolytica KU27]
Length = 384
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KD NKPK+P +A+ +F E QYKK P K ++ +GK G +WK + E
Sbjct: 102 KDENKPKKPKNAYLLFSSEKYPQYKKQFPDLK-ISEIGKKIGVEWKELPE 150
>gi|392876654|gb|AFM87159.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
DPN PKRP S FF+F R + +++ P S+ + K GEKW +M
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECP-GLSIGDIAKKLGEKWNAM 152
Score = 39.3 bits (90), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMS 81
K A+DP KP+ +++ +F++ RE++KK HP K S K E WK+MS
Sbjct: 16 KMARDPKKPRGRLTSYALFVQTCREEHKKKHPEKVVSFTEFSKKCSEGWKTMS 68
>gi|409050062|gb|EKM59539.1| hypothetical protein PHACADRAFT_250106 [Phanerochaete carnosa
HHB-10118-sp]
Length = 256
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH---PKNKSVAAVGKAGGE 75
RK KDPN PKRP S++ +F E R++ K H P N+ +A + KA G+
Sbjct: 87 RKRKTKPKDPNAPKRPPSSYLLFQNEVRQELKAKHPNIPNNELLAKIAKAWGD 139
>gi|392592827|gb|EIW82153.1| hypothetical protein CONPUDRAFT_122772 [Coniophora puteana
RWD-64-598 SS2]
Length = 341
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
RK KDPN PKRPASA+ +F + R +YK +P N + + + ++W +M +
Sbjct: 158 RKREVKEKDPNAPKRPASAYLLFQNQVRSKYKTANP-NLPQSDLLQLISQQWSNMPQ 213
>gi|295671102|ref|XP_002796098.1| nucleosome binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284231|gb|EEH39797.1| nucleosome binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 103
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KDPN PKR SA+ F E R+ ++++P S VGK GE+WK+++E
Sbjct: 21 KDPNAPKRGLSAYMFFANEQRDNVREENP-GISFGQVGKVLGERWKALNE 69
>gi|410910282|ref|XP_003968619.1| PREDICTED: high mobility group-T protein-like isoform 1 [Takifugu
rubripes]
Length = 196
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
KDPN PKRP SAFF+F E R + K ++P ++ K GE W S
Sbjct: 89 KDPNAPKRPPSAFFLFCAELRPKVKSENP-GLTIGDTAKKLGEMWNS 134
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
KDP KP+ S++ F++ RE++KK HP + + A K E+WK+MS
Sbjct: 3 KDPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMS 52
>gi|406699554|gb|EKD02756.1| nonhistone protein 6 [Trichosporon asahii var. asahii CBS 8904]
Length = 234
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSE 82
KDPN PKRP SA+ +F + RE+ ++ HP K V +V +WK + E
Sbjct: 85 KDPNAPKRPPSAYLLFQNDIREEIRQAHPGMPYKEVLSV---IANRWKDLDE 133
>gi|407850184|gb|EKG04681.1| high mobility group protein, putative [Trypanosoma cruzi]
Length = 270
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAV 84
AKD N PKR SA+F F+ +FR K HP + SV KA G WK +S+ +
Sbjct: 199 AKDENAPKRSMSAYFFFVGDFR----KKHP-DLSVTETSKAAGAAWKELSDEM 246
>gi|23396867|sp|Q9N1Q5.1|SP100_HYLLA RecName: Full=Nuclear autoantigen Sp-100; AltName: Full=Nuclear
dot-associated Sp100 protein; AltName: Full=Speckled 100
kDa
gi|7239187|gb|AAF43110.1|AF169948_1 SP100-HMG nuclear autoantigen, partial [Hylobates lar]
Length = 242
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP AFF+F E+R + K +HP S+ V K E W + + A
Sbjct: 139 DPNAPKRPPLAFFLFCSEYRPKIKGEHP-GLSIDDVVKKLAEMWNNTAAA 187
>gi|70999478|ref|XP_754458.1| nucleosome binding protein (Nhp6a) [Aspergillus fumigatus Af293]
gi|74674416|sp|Q4WY33.1|NHP6_ASPFU RecName: Full=Non-histone chromosomal protein 6
gi|66852095|gb|EAL92420.1| nucleosome binding protein (Nhp6a), putative [Aspergillus
fumigatus Af293]
gi|159127475|gb|EDP52590.1| nucleosome binding protein (Nhp6a), putative [Aspergillus
fumigatus A1163]
Length = 104
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
KDPN PKR SA+ F E R++ ++++P S VGK GE+WK++S++
Sbjct: 20 KDPNAPKRGLSAYMFFANENRDKVREENP-GISFGQVGKMLGERWKALSDS 69
>gi|426328852|ref|XP_004065350.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B4
[Gorilla gorilla gorilla]
Length = 186
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
G++ + +DP P+RP S+F +F ++ Q K+++P N SV V KA G+ W + ++
Sbjct: 79 VGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSTATD 136
>gi|392876858|gb|AFM87261.1| high mobility group protein [Callorhinchus milii]
gi|392878442|gb|AFM88053.1| high mobility group protein [Callorhinchus milii]
gi|392880194|gb|AFM88929.1| high mobility group protein [Callorhinchus milii]
gi|392881188|gb|AFM89426.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
DPN PKRP S FF+F R + +++ P S+ + K GEKW +M
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECP-GLSIGDIAKKLGEKWNAM 152
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMS 81
K A+DP KP+ +++ +F++ RE++KK HP K S K E+WK+MS
Sbjct: 16 KMARDPKKPRGRLTSYALFVQTCREEHKKKHPEKVVSFTEFSKKCSERWKTMS 68
>gi|18088957|gb|AAH21180.1| High-mobility group box 4 [Homo sapiens]
gi|312150396|gb|ADQ31710.1| high-mobility group box 4 [synthetic construct]
Length = 186
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
G++ + +DP P+RP S+F +F ++ Q K+++P N SV V KA G+ W + ++
Sbjct: 79 VGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSTATD 136
>gi|118344004|ref|NP_001071827.1| FACT complex subunit SSRP1 [Ciona intestinalis]
gi|110287972|sp|Q4H2R2.1|SSRP1_CIOIN RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Structure-specific recognition protein 1
gi|70571284|dbj|BAE06715.1| transcription factor protein [Ciona intestinalis]
Length = 704
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P K RK KDPN PKRP SA+F+++ E R ++K ++ K SV + K G++WK +
Sbjct: 541 PGKVKRKK----KDPNAPKRPQSAYFLWLNENRGRFKAEN-KGISVTELTKLAGKEWKKI 595
Query: 81 S 81
Sbjct: 596 D 596
>gi|387914724|gb|AFK10971.1| high mobility group box 1 [Callorhinchus milii]
Length = 226
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
DPN PKRP S FF+F R + +++ P S+ + K GEKW +M
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECP-GLSIGDIAKKLGEKWNAM 152
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMS 81
K A+DP KP+ ++ +F++ RE++KK HP K S K E+WK+MS
Sbjct: 16 KMARDPKKPRGRLTSHALFVQTCREEHKKKHPEKVVSFTEFSKKCSERWKTMS 68
>gi|344245465|gb|EGW01569.1| hypothetical protein I79_003161 [Cricetulus griseus]
Length = 163
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
KDPN PKRP SA F+F E+R + K +HP S+ V K GE W +
Sbjct: 15 KDPNAPKRPPSA-FLFCSEYRPKIKGEHP-GLSIGDVAKKLGELWHT 59
>gi|392884154|gb|AFM90909.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
DPN PKRP S FF+F R + +++ P S+ + K GEKW +M
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECP-GLSIGDIAKKLGEKWNAM 152
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMS 81
K A+DP KP+ +++ +F++ RE++KK HP K S K E+W++MS
Sbjct: 16 KMARDPKKPRGRLTSYALFVQTCREEHKKKHPEKVVSFTEFSKKCSERWETMS 68
>gi|392878936|gb|AFM88300.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
DPN PKRP S FF+F R + +++ P S+ + K GEKW +M
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECP-GLSIGDIAKKLGEKWNAM 152
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMS 81
K A+DP KP+ +++ +F++ RE++KK HP K S K E+WK+MS
Sbjct: 16 KMARDPKKPRGRLTSYALFVQTCREEHKKKHPEKVVSFTEFSKKCSERWKTMS 68
>gi|351712376|gb|EHB15295.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 139
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAF +F E+ + K HP+ S V K GE W
Sbjct: 39 KDPNAPKRPPSAFLLFCSEYHPKIKGGHPR-LSNGDVAKKLGEMW 82
>gi|225681708|gb|EEH19992.1| nucleosome binding protein [Paracoccidioides brasiliensis Pb03]
Length = 103
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KDPN PKR SA+ F E R+ ++++P S VGK GE+WK+++E
Sbjct: 21 KDPNAPKRGLSAYMFFANEQRDNVREENP-GISFGQVGKVLGERWKALNE 69
>gi|444730059|gb|ELW70455.1| High mobility group protein B1 [Tupaia chinensis]
gi|444730060|gb|ELW70456.1| High mobility group protein B1 [Tupaia chinensis]
Length = 177
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP AFF F E+ + K +HP S+ V K GE W
Sbjct: 57 KDPNAPKRPPLAFFFFCSEYCPKIKGEHP-GLSIGDVAKKLGEMW 100
>gi|194885620|ref|XP_001976465.1| GG19998 [Drosophila erecta]
gi|190659652|gb|EDV56865.1| GG19998 [Drosophila erecta]
Length = 724
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
KD KPKR +AF +++ + RE K+D+P K V + K GGE WK +
Sbjct: 548 KDSGKPKRATTAFMLWLNDTRESIKRDNPGIK-VTEIAKKGGEMWKEL 594
>gi|406862701|gb|EKD15750.1| nucleosome binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 102
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
++ K KDPN PKR SA+ F E RE ++++P + VGK GE+WK++++
Sbjct: 14 RTEKKKKDPNAPKRGLSAYMFFANEQRENVREENP-GITFGQVGKVLGERWKALND 68
>gi|402875874|ref|XP_003901718.1| PREDICTED: high mobility group protein B2-like, partial [Papio
anubis]
Length = 248
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
PN PKRP SAFF+F E R + K +HP S+ K GE W S
Sbjct: 127 PNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSQQS 172
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 25 GRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
GR+S K DPNKP+ S++ F++ RE++K+ HP + A K E+WK+MS
Sbjct: 30 GRRSVTMGKGDPNKPRGKMSSYAFFVQTCREEHKEKHPDSSVGFAEFSKKCSERWKTMS 88
>gi|156083745|ref|XP_001609356.1| high mobility group protein-like protein NHP1 [Babesia bovis
T2Bo]
gi|730136|sp|P40632.1|NHP1_BABBO RecName: Full=High mobility group protein homolog NHP1
gi|344189439|pdb|2LHJ|A Chain A, Nmr Structure Of The High Mobility Group Protein-Like
Protein Nhp1 From Babesia Bovis T2bo (Baboa.00841.A)
gi|155890|gb|AAA27799.1| non-histone protein [Babesia bovis]
gi|154796607|gb|EDO05788.1| high mobility group protein-like protein NHP1 [Babesia bovis]
Length = 97
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMSE 82
R+ KA KDPN PKR S++ F +E R + ++P+ K VAA+GK G W ++S+
Sbjct: 11 RRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSD 68
>gi|378727181|gb|EHY53640.1| non-histone chromosomal protein 6 [Exophiala dermatitidis
NIH/UT8656]
Length = 102
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KDPN PKR SA+ F E RE ++++P S VGK G++WK+++E
Sbjct: 19 KDPNAPKRGLSAYMFFANEQRESVREENP-GISFGQVGKVLGDRWKALNE 67
>gi|307192730|gb|EFN75838.1| High mobility group protein DSP1 [Harpegnathos saltator]
Length = 205
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
+++P + R+ K +D + PKR SAFF F +E R + ++ HP+ V + K G+ W
Sbjct: 103 HEEPERPTRRGTKRYRDKDAPKRALSAFFYFCQELRSKMRELHPE-MGVGEIAKELGKLW 161
Query: 78 KS 79
S
Sbjct: 162 MS 163
>gi|444716453|gb|ELW57303.1| High mobility group protein B1 [Tupaia chinensis]
Length = 213
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKRP SAFF+F E+R + ++HP S+ V K E W +++
Sbjct: 77 KDPNAPKRPPSAFFLFCSEYRPKI-REHP-GLSIGDVAKKLEEMWNNIA 123
>gi|348566777|ref|XP_003469178.1| PREDICTED: high mobility group protein B2-like [Cavia porcellus]
Length = 211
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
PN PKRP SAFF+F E R + K +HP S+ K GE W S
Sbjct: 93 PNAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQS 138
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
DPNKP+ S++ F++ RE++KK HP + + A K E+WK+MS
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMS 53
>gi|296317265|ref|NP_001171733.1| dorsal switch-like hmg protein [Saccoglossus kowalevskii]
Length = 215
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 12 NAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGK 71
N ++ P + + KDP+ PKR S FF+F R + KK HP N V V K
Sbjct: 73 NTEMEKYTPPKGEKKGKKRKRKDPDAPKRNLSPFFLFCNVKRAEVKKVHP-NWGVGDVAK 131
Query: 72 AGGEKWKSMSEA 83
A GE+WK++S A
Sbjct: 132 ALGEQWKNVSAA 143
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSV-AAVGKAGGEKWKSMSE 82
+P+KPK SA+ F++ R+++KK HP V A K E+WK M++
Sbjct: 6 NPDKPKGRMSAYAFFVQSCRQEHKKQHPAESVVFAEFSKKCAERWKKMTD 55
>gi|219111369|ref|XP_002177436.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411971|gb|EEC51899.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]
Length = 147
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+A KDP+ PKRP SAF F R KK HP+ K+ V + GE W+S SE
Sbjct: 79 RAKKDPSAPKRPMSAFLYFSLGRRSDLKKKHPEIKNT-EVSRLLGEMWRSASE 130
>gi|119491564|ref|XP_001263303.1| nucleosome binding protein (Nhp6a), putative [Neosartorya
fischeri NRRL 181]
gi|119411463|gb|EAW21406.1| nucleosome binding protein (Nhp6a), putative [Neosartorya
fischeri NRRL 181]
Length = 104
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
KDPN PKR SA+ F E R++ ++++P S VGK GE+WK++S+
Sbjct: 20 KDPNAPKRGLSAYMFFANENRDKVREENP-GISFGQVGKMLGERWKALSDT 69
>gi|167388437|ref|XP_001738566.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165898168|gb|EDR25112.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 395
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KD NKPK+P +A+ +F E QYKK P K ++ +GK G +WK + E
Sbjct: 103 KDENKPKKPKNAYLLFSSEKYPQYKKQFPDLK-ISEIGKKIGVEWKELPE 151
>gi|260942113|ref|XP_002615355.1| hypothetical protein CLUG_04237 [Clavispora lusitaniae ATCC 42720]
gi|238850645|gb|EEQ40109.1| hypothetical protein CLUG_04237 [Clavispora lusitaniae ATCC 42720]
Length = 195
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS---VAAVGKAGGEKWKSMSE 82
K A+DPN PK+P +A+++F E+ +E+ K + KS V K E+WKSMS+
Sbjct: 53 KMARDPNLPKKPLNAYWIFFEKEKERVKAELEAGKSEKPALDVSKTLTERWKSMSD 108
>gi|145233003|ref|XP_001399874.1| non-histone chromosomal protein 6 [Aspergillus niger CBS 513.88]
gi|317026969|ref|XP_003188583.1| non-histone chromosomal protein 6 [Aspergillus niger CBS 513.88]
gi|134056796|emb|CAK37704.1| unnamed protein product [Aspergillus niger]
gi|350634700|gb|EHA23062.1| hypothetical protein ASPNIDRAFT_206990 [Aspergillus niger ATCC
1015]
Length = 103
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
KDPN PKR SA+ F + RE+ ++++P S VGK GE+WK++S+
Sbjct: 20 KDPNAPKRGLSAYMFFANDNREKVREENP-GISFGQVGKMLGERWKALSDT 69
>gi|410928771|ref|XP_003977773.1| PREDICTED: TOX high mobility group box family member 4-B-like
[Takifugu rubripes]
Length = 684
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 2 KGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHP 61
+GG +S A LSV P G K G+ KDPN+P++P SA+ +F + + K +P
Sbjct: 269 RGGAKQS----APLSV---PGVVGNKKGRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNP 321
Query: 62 KNKSVAAVGKAGGEKWKSMSE 82
+ S V K W S++E
Sbjct: 322 -SASFGEVSKIVASMWDSLAE 341
>gi|340383933|ref|XP_003390470.1| PREDICTED: FACT complex subunit SSRP1-like, partial [Amphimedon
queenslandica]
Length = 410
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
DPN PK+P S++ ++++E R KK HP+ S+ + K G+ WK +
Sbjct: 277 DPNCPKKPLSSYMLWLQEMRPSLKKKHPE-LSITEMSKKAGQLWKEL 322
>gi|335308835|ref|XP_003361389.1| PREDICTED: high mobility group protein B4-like [Sus scrofa]
Length = 198
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G K + +DP P+RP S+F +F ++ Q K+++P N SVA V KA W + ++
Sbjct: 81 VGGKRKRRKRDPQAPRRPPSSFLLFCQDNYAQLKRENP-NWSVAQVAKASARMWSTTTDV 139
>gi|344230059|gb|EGV61944.1| HMG-box [Candida tenuis ATCC 10573]
Length = 259
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 18 NKKPAKAGRKSGKA---AKDPNKPKRPASAFFVFMEEFREQYKKDHPKN--KSVAAVGKA 72
NK+P K+ G +DPN PKRP +A+ +F E +E+ K + + SV +GK
Sbjct: 93 NKRPKKSTAPKGTLKNRIRDPNLPKRPTNAYLIFCESEKERIKNETGDSSLSSVHDLGKN 152
Query: 73 GGEKWKSMSE 82
E WK++ E
Sbjct: 153 LVEAWKNLDE 162
>gi|255936601|ref|XP_002559327.1| Pc13g09020 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583947|emb|CAP91971.1| Pc13g09020 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 108
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
KDPN PKR SA+ F + R++ ++++P S VGK G+KWK++SE
Sbjct: 23 KDPNAPKRGLSAYMFFANDNRDKVREENP-GISFGQVGKQLGDKWKALSET 72
>gi|195025112|ref|XP_001986001.1| GH21124 [Drosophila grimshawi]
gi|193902001|gb|EDW00868.1| GH21124 [Drosophila grimshawi]
Length = 111
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
+KPKRP SA+ +++ RE KK++P K V V K GGE W++M
Sbjct: 3 DKPKRPLSAYMLWLNSARESIKKENPGIK-VTEVAKRGGELWRAM 46
>gi|332025495|gb|EGI65658.1| High mobility group protein DSP1 [Acromyrmex echinatior]
Length = 204
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
+++P + R+ K +D + PKR SAFF F +E R + ++ HP+ V + K G+ W
Sbjct: 102 HEEPERPTRRGTKRYRDKDAPKRALSAFFYFCQELRSKMRELHPE-MGVGDIAKELGKLW 160
Query: 78 KS 79
S
Sbjct: 161 MS 162
>gi|308238179|ref|NP_001184126.1| structure specific recognition protein 1 [Xenopus (Silurana)
tropicalis]
Length = 695
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DP+ PKRP SA+ +++ RE+ K ++P S+ + K GE WKSMS
Sbjct: 537 DPSAPKRPMSAYMLWLNASREKIKSENP-GISITDLSKKAGEIWKSMS 583
>gi|339046261|ref|NP_009647.2| Nhp6bp [Saccharomyces cerevisiae S288c]
gi|341942236|sp|P11633.3|NHP6B_YEAST RecName: Full=Non-histone chromosomal protein 6B
gi|4036|emb|CAA33378.1| unnamed protein product [Saccharomyces cerevisiae]
gi|45271022|gb|AAS56892.1| YBR089C-A [Saccharomyces cerevisiae]
gi|151946484|gb|EDN64706.1| nonhistone chromosomal protein [Saccharomyces cerevisiae YJM789]
gi|190408749|gb|EDV12014.1| 11 kDa nonhistone chromosomal protein [Saccharomyces cerevisiae
RM11-1a]
gi|256274037|gb|EEU08951.1| Nhp6bp [Saccharomyces cerevisiae JAY291]
gi|290878106|emb|CBK39165.1| Nhp6bp [Saccharomyces cerevisiae EC1118]
gi|333454471|tpg|DAA07210.2| TPA: Nhp6bp [Saccharomyces cerevisiae S288c]
Length = 99
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
K+P + +++ + KDPN PKR SA+ F E R+ + ++P + + VG+ GE+WK
Sbjct: 8 KQPKEPKKRTTRRKKDPNAPKRGLSAYMFFANENRDIVRSENP-DVTFGQVGRILGERWK 66
Query: 79 SMS 81
+++
Sbjct: 67 ALT 69
>gi|449550188|gb|EMD41153.1| hypothetical protein CERSUDRAFT_111715 [Ceriporiopsis subvermispora
B]
Length = 252
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYK---KDHPKNKSVAAVGKAGGEKWKSM 80
GRK K KDPN PKRPAS++ +F + R + K D P N+ + + E WK M
Sbjct: 86 GRKRVKKVKDPNAPKRPASSYLLFQNDVRGELKGKFPDMPNNELLNHI----SELWKKM 140
>gi|328350132|emb|CCA36532.1| Hepatocyte growth factor-regulated tyrosine kinase substrate
[Komagataella pastoris CBS 7435]
Length = 725
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 9 DTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAA 68
+ NAK ++ ++ K GRK KDPN PKR SA+ F E R+ + ++P
Sbjct: 624 NNTNAKGTMAERRTKTGRKK----KDPNAPKRSLSAYMFFANEQRDIVRSENP-GIQFGE 678
Query: 69 VGKAGGEKWKSM 80
+GK GEKWK++
Sbjct: 679 IGKLLGEKWKAL 690
>gi|242781691|ref|XP_002479852.1| nucleosome binding protein (Nhp6a), putative [Talaromyces
stipitatus ATCC 10500]
gi|242781695|ref|XP_002479853.1| nucleosome binding protein (Nhp6a), putative [Talaromyces
stipitatus ATCC 10500]
gi|242781700|ref|XP_002479854.1| nucleosome binding protein (Nhp6a), putative [Talaromyces
stipitatus ATCC 10500]
gi|218719999|gb|EED19418.1| nucleosome binding protein (Nhp6a), putative [Talaromyces
stipitatus ATCC 10500]
gi|218720000|gb|EED19419.1| nucleosome binding protein (Nhp6a), putative [Talaromyces
stipitatus ATCC 10500]
gi|218720001|gb|EED19420.1| nucleosome binding protein (Nhp6a), putative [Talaromyces
stipitatus ATCC 10500]
Length = 103
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
S K KDPN PKR SA+ F E RE+ + ++P + A+G+ GE WK +S+A
Sbjct: 15 SEKRKKDPNAPKRGLSAYMFFANENRERVRDENP-GIAFGALGRKLGELWKGLSDA 69
>gi|49250826|gb|AAH74541.1| Ssrp1 protein, partial [Xenopus (Silurana) tropicalis]
Length = 629
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DP+ PKRP SA+ +++ RE+ K ++P S+ + K GE WKSMS
Sbjct: 537 DPSAPKRPMSAYMLWLNASREKIKSENP-GISITDLSKKAGEIWKSMS 583
>gi|409075858|gb|EKM76234.1| hypothetical protein AGABI1DRAFT_16670, partial [Agaricus
bisporus var. burnettii JB137-S8]
gi|426193694|gb|EKV43627.1| hypothetical protein AGABI2DRAFT_56560, partial [Agaricus
bisporus var. bisporus H97]
Length = 106
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
S K+ KDP PKR SA+ F +++RE+ K ++P+ VGK G KWK M E
Sbjct: 13 SRKSKKDPKAPKRALSAYMFFSQDWRERIKTENPEA-GFGEVGKLLGAKWKEMDE 66
>gi|449706836|gb|EMD46596.1| HMG (high mobility group) box domain containing protein, putative
[Entamoeba histolytica KU27]
Length = 80
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
PN+PKRP + +F+++ E R K++HP + + K E+WK
Sbjct: 26 PNRPKRPPTPYFIYLNEHRASIKEEHP-DIRFTEISKVASEQWK 68
>gi|395539165|ref|XP_003771543.1| PREDICTED: HMG box-containing protein 1 [Sarcophilus harrisii]
Length = 525
Score = 43.1 bits (100), Expect = 0.021, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 10 TRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAV 69
+ N+ S K +G S +A PNK KRP +AF +F +++R +Y + +P K A+
Sbjct: 417 SSNSLYSKAVKSHSSGTTSTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYP-GKDNRAI 475
Query: 70 GKAGGEKWKSM 80
G++WK M
Sbjct: 476 SVILGDRWKKM 486
>gi|339242839|ref|XP_003377345.1| high mobility group protein 1.2 [Trichinella spiralis]
gi|316973861|gb|EFV57410.1| high mobility group protein 1.2 [Trichinella spiralis]
Length = 229
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
RK ++ KDPN PKR SAFF F R + ++ HP K V V + G WK++ E
Sbjct: 112 RKRKRSKKDPNAPKRALSAFFFFSNSKRAEIQQAHPDWK-VGQVAQELGRMWKAIDE 167
>gi|440631791|gb|ELR01710.1| non-histone chromosomal protein 6 [Geomyces destructans 20631-21]
Length = 101
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K KDPN PKR SA+ F +E R+ ++++P S VGK GE+WK++++
Sbjct: 17 KKKKDPNAPKRGLSAYMFFAQEQRDNVREENP-GISFGQVGKVLGERWKALND 68
>gi|448530095|ref|XP_003869985.1| Nhp6a non-histone chromatin component [Candida orthopsilosis Co
90-125]
gi|354547725|emb|CCE44460.1| hypothetical protein CPAR2_402610 [Candida parapsilosis]
gi|380354339|emb|CCG23854.1| Nhp6a non-histone chromatin component [Candida orthopsilosis]
Length = 93
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
RK + KDP+ PKR SA+ F E R+ + ++P S VGKA G+KWK++S
Sbjct: 8 RKVSRKKKDPDAPKRSLSAYMFFANENRDIVRAENP-GISFGQVGKALGDKWKALS 62
>gi|90076282|dbj|BAE87821.1| unnamed protein product [Macaca fascicularis]
Length = 123
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHP 61
K KDPN PKRP SAFF+F E+R + K +HP
Sbjct: 87 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP 118
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|110766132|ref|XP_001120264.1| PREDICTED: FACT complex subunit Ssrp1 [Apis mellifera]
Length = 728
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
KD NKPKRP +AF +++ RE+ K ++P +V + K GGE W+ +
Sbjct: 544 KDTNKPKRPPTAFMMWLNSARERIKAENP-GIAVTEIAKKGGEMWREL 590
>gi|444729306|gb|ELW69730.1| High mobility group protein B1 [Tupaia chinensis]
Length = 160
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKRP AFF+F E+ + + +HP + V K GE W + +
Sbjct: 39 KDPNAPKRPPLAFFLFCSEYHPKIRGEHP-GLYIGDVAKKLGEMWTNTA 86
>gi|358372276|dbj|GAA88880.1| nucleosome binding protein (Nhp6a) [Aspergillus kawachii IFO
4308]
Length = 104
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
KDPN PKR SA+ F + RE+ ++++P S VGK GE+WK++S+
Sbjct: 21 KDPNAPKRGLSAYMFFANDNREKVREENP-GISFGQVGKMLGERWKALSDT 70
>gi|351702997|gb|EHB05916.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 204
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKR S FF+F E+R + K +HP S V K GE W
Sbjct: 90 KDPNAPKRAPSTFFLFCSEYRPKIKGEHP-GLSTGDVAKKLGEMW 133
>gi|412986017|emb|CCO17217.1| nucleosome binding protein [Bathycoccus prasinos]
Length = 346
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 6 SKSDTRNAKLSVNKKPAKAGRK---SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPK 62
++ DT +K K+ G+ S K KDPNKPK P + F+ RE+ K+ P
Sbjct: 138 TRGDTNPSKKKQQKRTGSGGKSTTSSTKEMKDPNKPKGPQGPYMCFVSHNREKIVKEFP- 196
Query: 63 NKSVAAVGKAGGEKWKSMSE 82
S GK G++W+++SE
Sbjct: 197 GISFGECGKKLGQRWQNLSE 216
>gi|195025098|ref|XP_001985998.1| GH20784 [Drosophila grimshawi]
gi|193901998|gb|EDW00865.1| GH20784 [Drosophila grimshawi]
Length = 111
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
+PKRP SA+ +++ E RE KK++P +K V + K GGE W+ +
Sbjct: 5 RPKRPLSAYMLWLNENRESIKKENPGSK-VTDIAKRGGELWRGL 47
>gi|156382433|ref|XP_001632558.1| predicted protein [Nematostella vectensis]
gi|156219615|gb|EDO40495.1| predicted protein [Nematostella vectensis]
Length = 287
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
M+G S NA S +KK KDPN PK+PA+AFF+F ++ R ++DH
Sbjct: 77 MQGQTSPGQVSNATTSSHKKGKSRSSAKQDKEKDPNAPKKPANAFFMFCQQQRTVMQEDH 136
Query: 61 PKNKSVAA---VGKAGGEKWKSM 80
+V + K+ ++W ++
Sbjct: 137 KDATAVMGHHELTKSLAKEWNNL 159
>gi|23394916|gb|AAN31640.1|AF484963_1 high mobility group protein 1 [Biomphalaria glabrata]
Length = 215
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DPNKPKRP +A+F+F+ ++R + ++K + K GE+W+S+S
Sbjct: 96 DPNKPKRPPTAYFLFLADYRIRMANKGIEHKELL---KMAGEEWRSLS 140
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
G+ S K KD NKPKR SA+F F+ + R++ K +A K EKWK++S
Sbjct: 9 GKNSKKKVKDVNKPKRATSAYFFFLAQCRKEAAKAGKAPTKIAEFTKEASEKWKALS 65
>gi|313747412|ref|NP_001186383.1| HMG box-containing protein 1 [Gallus gallus]
Length = 517
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 17/90 (18%)
Query: 5 KSKSDTRNA------KLSVNKKPAKAGRKSGK------AAKDPNKPKRPASAFFVFMEEF 52
+S+ T+N LS +KAG+ G +A PNK KRP +AF +F +++
Sbjct: 392 RSECSTKNCAATAASHLSSTSLYSKAGKSHGSGTASTVSATSPNKCKRPMNAFMLFAKKY 451
Query: 53 REQYKKDHP--KNKSVAAVGKAGGEKWKSM 80
R +Y + +P N++++ + G++WK M
Sbjct: 452 RVEYTQMYPGKDNRAISVI---LGDRWKKM 478
>gi|386783903|gb|AFJ24846.1| high mobility group-1 [Schmidtea mediterranea]
Length = 192
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 6 SKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS 65
+K R K N +P AG K+ + KDPNKPK +AFF F +E R++ K+++P+ K
Sbjct: 62 AKDKERYLKEMDNYQPP-AGTKNKRKIKDPNKPKGAWTAFFFFSDEHRKKIKEENPEYK- 119
Query: 66 VAAVGKAGGEKWKSMSE 82
V V K G+ W++ +
Sbjct: 120 VGDVAKVLGKMWEACKD 136
>gi|171848939|pdb|2YQI|A Chain A, Solution Structure Of The Second Hmg-Box Domain From
High Mobility Group Protein B3
Length = 81
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
G + N PKRP S FF+F EFR + K +P S+ V K GE W +++++
Sbjct: 1 GSSGSSGNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDS 54
>gi|425767422|gb|EKV05996.1| Non-histone chromosomal protein 6 [Penicillium digitatum PHI26]
gi|425779648|gb|EKV17689.1| Non-histone chromosomal protein 6 [Penicillium digitatum Pd1]
Length = 189
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
KDPN PKR SA+ F + R++ ++++P S VGK G+KWK++SE
Sbjct: 104 KDPNAPKRGLSAYMFFANDNRDKVREENP-GISFGQVGKQLGDKWKALSET 153
>gi|253314412|ref|NP_001156579.1| structure specific recognition protein-like [Acyrthosiphon pisum]
Length = 755
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
D +PKR A+A+ ++ E RE+ K D+P S + K GGE WK MS
Sbjct: 547 DDGRPKRAATAYMIWFNEAREEIKSDNP-GISFVDIAKKGGELWKKMS 593
>gi|255715687|ref|XP_002554125.1| KLTH0E14850p [Lachancea thermotolerans]
gi|238935507|emb|CAR23688.1| KLTH0E14850p [Lachancea thermotolerans CBS 6340]
Length = 93
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P +A +++ + KDPN PKR SA+ F E R+ + ++P + VG+ G+KWK++
Sbjct: 4 PREAKKRTTRRKKDPNAPKRALSAYMFFANENRDIVRAENP-GVTFGQVGRLLGDKWKAL 62
Query: 81 SE 82
++
Sbjct: 63 TD 64
>gi|115396468|ref|XP_001213873.1| nonhistone chromosomal protein 6A [Aspergillus terreus NIH2624]
gi|114193442|gb|EAU35142.1| nonhistone chromosomal protein 6A [Aspergillus terreus NIH2624]
Length = 101
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKR SA+ F E R++ ++++P + VGK GEKWK++SE
Sbjct: 19 DPNAPKRGLSAYMFFANENRDKVREENP-GITFGQVGKMLGEKWKALSE 66
>gi|444724258|gb|ELW64868.1| High mobility group protein B1 [Tupaia chinensis]
Length = 140
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
K PN KRP SAFF+F E+R + K +HP S+ V K GE W + +
Sbjct: 28 KGPNAAKRPPSAFFLFCSEYRPKIKGEHP-GLSIGGVAKKLGEVWNNTA 75
>gi|351710199|gb|EHB13118.1| High mobility group protein B3 [Heterocephalus glaber]
Length = 191
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK +K KDPN KRP S FF+F EF + K +P S+ V K GE W ++
Sbjct: 80 PAKGSKKK----KDPNATKRPPSGFFLFCSEFHPKIKSTNP-GISIGDVAKKLGEMWNNL 134
Query: 81 SEA 83
+++
Sbjct: 135 NDS 137
>gi|225703820|gb|ACO07756.1| High mobility group protein B1 [Oncorhynchus mykiss]
Length = 193
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
KDPN KRP SAFF+F +FR + K +HP S+ K G W S
Sbjct: 89 KDPNALKRPPSAFFIFCADFRAKIKSEHP-GLSIGDTAKKLGVMWNS 134
>gi|159476440|ref|XP_001696319.1| high mobility group protein [Chlamydomonas reinhardtii]
gi|158282544|gb|EDP08296.1| high mobility group protein [Chlamydomonas reinhardtii]
Length = 179
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DPN PK+P ++F F RE K ++P + VGK GEKWK +S
Sbjct: 57 DPNAPKKPLTSFMYFSNAIRESVKSENP-GIAFGEVGKVIGEKWKGLS 103
>gi|71019847|ref|XP_760154.1| hypothetical protein UM04007.1 [Ustilago maydis 521]
gi|46099871|gb|EAK85104.1| hypothetical protein UM04007.1 [Ustilago maydis 521]
Length = 286
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
+NA ++ KK G K +DP KPKRP SAFF F+ + R ++
Sbjct: 190 QNAYIASQKK---KGIKGTAFLRDPAKPKRPNSAFFEFLNDLR----ASEAVIPNITEFS 242
Query: 71 KAGGEKWKSMS 81
K GGE+WK MS
Sbjct: 243 KRGGERWKQMS 253
>gi|118371960|ref|XP_001019178.1| Nonhistone chromosomal protein LG-1, putative [Tetrahymena
thermophila]
gi|89300945|gb|EAR98933.1| Nonhistone chromosomal protein LG-1, putative [Tetrahymena
thermophila SB210]
Length = 157
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+K P PKRP SAFF+F + EQ KK++P N + + EKWK++ E
Sbjct: 63 SKQPAPPKRPLSAFFLFKQHNYEQVKKENP-NAKITELTSMIAEKWKAVGE 112
>gi|403307003|ref|XP_003944004.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Saimiri boliviensis boliviensis]
Length = 94
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
PAK G+K DPN PKRP S F+F EF + K +P S+ V K GE W
Sbjct: 42 PAKGGKKD-----DPNAPKRPPSGLFLFCLEFCPKIKSTNP-GISIGYVAKKLGEMW 92
>gi|448516014|ref|XP_003867470.1| Nhp10 protein [Candida orthopsilosis Co 90-125]
gi|380351809|emb|CCG22032.1| Nhp10 protein [Candida orthopsilosis]
Length = 335
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 35/53 (66%), Gaps = 4/53 (7%)
Query: 33 KDPNKPKRPASAFFVFMEEFRE---QYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+DP+ PKRP +A+ +F E+ +E Q +++ P+N + + KA E WK++SE
Sbjct: 161 RDPDLPKRPTNAYLLFCEQEKERLRQQQQEDPEN-NTRDLSKAMTEAWKALSE 212
>gi|343425092|emb|CBQ68629.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 290
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 11 RNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVG 70
+NA ++ KK G K +DP KPKRP SAFF F+ + R ++
Sbjct: 194 QNAYIASQKK---KGIKGTAFLRDPAKPKRPNSAFFEFLNDLR----ASEAVIPNITEFS 246
Query: 71 KAGGEKWKSMS 81
K GGE+WK MS
Sbjct: 247 KRGGERWKQMS 257
>gi|344300446|gb|EGW30767.1| Non-histone chromosomal protein 6 [Spathaspora passalidarum NRRL
Y-27907]
Length = 93
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
RK+ + KDP+ PKR SA+ F E R+ + ++P S VGK GEKWK+++
Sbjct: 8 RKATRKKKDPDAPKRSLSAYMFFANENRDIVRAENP-GISFGQVGKLLGEKWKALT 62
>gi|341879743|gb|EGT35678.1| CBN-HMG-1.2 protein [Caenorhabditis brenneri]
Length = 235
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
A RK +A KDP+ PKR SAFF + ++ R + + HP K V V + G+ WK +S+
Sbjct: 121 AMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQSAHPDWK-VGQVAQELGKMWKQVSQE 179
Query: 84 V 84
+
Sbjct: 180 L 180
>gi|302755040|ref|XP_002960944.1| hypothetical protein SELMODRAFT_73858 [Selaginella moellendorffii]
gi|300171883|gb|EFJ38483.1| hypothetical protein SELMODRAFT_73858 [Selaginella moellendorffii]
Length = 457
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
S + KDP KPKRP + + + EE R + N V +GK GE+W+SM E
Sbjct: 240 SFRKEKDPEKPKRPTTGYMAYSEERRPALMNE---NLKVPQIGKILGEEWRSMDE 291
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DP + K+P S++F++ + RE+ + +P N + + GE WKS+SE
Sbjct: 126 DPERIKKPLSSYFLWCNDQREKVRAQNP-NAGIKELSSIFGELWKSVSE 173
>gi|366998295|ref|XP_003683884.1| hypothetical protein TPHA_0A03740 [Tetrapisispora phaffii CBS
4417]
gi|357522179|emb|CCE61450.1| hypothetical protein TPHA_0A03740 [Tetrapisispora phaffii CBS
4417]
Length = 93
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DPN PKR SA+ F E R+ K ++P + S VG+ GEKWK+++
Sbjct: 17 DPNAPKRALSAYMFFANETRDIVKAENP-DVSFGQVGRILGEKWKALT 63
>gi|50304233|ref|XP_452066.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74636989|sp|Q6CVH3.1|NHP6_KLULA RecName: Full=Non-histone chromosomal protein 6
gi|49641198|emb|CAH02459.1| KLLA0B12056p [Kluyveromyces lactis]
Length = 93
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+K+ + KDPN PKR SA+ F E R+ + ++P + VG+ GEKWK+++E
Sbjct: 6 KKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENP-GITFGQVGRILGEKWKALNE 61
>gi|426397135|ref|XP_004064781.1| PREDICTED: high mobility group protein B3-like [Gorilla gorilla
gorilla]
Length = 221
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
P + G+K KDPN KRP S FF+F EFR + K +P S+ + K GE W +
Sbjct: 100 PVEGGKK-----KDPNALKRPLSGFFLFCSEFRPKIKSTNP-GISIGDMAKKLGEMWINY 153
Query: 81 SE 82
S+
Sbjct: 154 SD 155
>gi|403295522|ref|XP_003938690.1| PREDICTED: high mobility group protein B3-like [Saimiri boliviensis
boliviensis]
Length = 202
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN KRP S FF+F EFR + K +P S+ V K GE W +++++
Sbjct: 89 DPNASKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDS 137
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
DP KPK SA+ F++ RE++KK +P+ + A K E+WK+MS
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMS 53
>gi|392300930|gb|EIW12019.1| Nhp6bp [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 162
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
K+P + +++ + KDPN PKR SA+ F E R+ + ++P + + VG+ GE+WK
Sbjct: 71 KQPKEPKKRTTRRKKDPNAPKRGLSAYMFFANENRDIVRSENP-DVTFGQVGRILGERWK 129
Query: 79 SMS 81
+++
Sbjct: 130 ALT 132
>gi|297809365|ref|XP_002872566.1| hypothetical protein ARALYDRAFT_911461 [Arabidopsis lyrata subsp.
lyrata]
gi|297318403|gb|EFH48825.1| hypothetical protein ARALYDRAFT_911461 [Arabidopsis lyrata subsp.
lyrata]
Length = 154
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DP KPK P A+ ++ E R K + NKSV V K GE+WKS+SE
Sbjct: 100 DPLKPKHPIFAYLIYANEGRAALKGE---NKSVIEVAKITGEEWKSLSE 145
>gi|56758270|gb|AAW27275.1| SJCHGC02538 protein [Schistosoma japonicum]
gi|226486700|emb|CAX74427.1| High mobility group protein DSP1 [Schistosoma japonicum]
gi|226486702|emb|CAX74428.1| High mobility group protein DSP1 [Schistosoma japonicum]
Length = 226
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSV-AAVGKAGGEKWKSMS 81
KD NKPK P SA+ F++ RE++KK HP + V + K E+WK M+
Sbjct: 4 TKDKNKPKGPMSAYSCFVQVIREEHKKKHPGEQIVFSDFSKKCAERWKLMT 54
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DP+ P R SAFF F +EFR + ++ +P K VA + K G +W+S +
Sbjct: 96 DPSVPARAWSAFFFFCDEFRAKVRESNPDWK-VADIAKELGRQWESCQD 143
>gi|268565525|ref|XP_002639471.1| Hypothetical protein CBG04066 [Caenorhabditis briggsae]
Length = 689
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DPN+PKR A+A+F++ R K+D +V V K GG KWK MS
Sbjct: 554 DPNEPKRAATAYFLWFNANRASLKED---GDTVPEVAKKGGAKWKEMS 598
>gi|226486704|emb|CAX74429.1| High mobility group protein DSP1 [Schistosoma japonicum]
Length = 226
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSV-AAVGKAGGEKWKSMS 81
KD NKPK P SA+ F++ RE++KK HP + V + K E+WK M+
Sbjct: 4 TKDKNKPKGPMSAYSCFVQVIREEHKKKHPGEQIVFSDFSKKCAERWKLMT 54
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DP+ P R SAFF F +EFR + ++ +P K VA + K G +W+S +
Sbjct: 96 DPSVPARAWSAFFFFCDEFRAKVRESNPDWK-VADIAKELGRQWESCQD 143
>gi|344248925|gb|EGW05029.1| hypothetical protein I79_015964 [Cricetulus griseus]
Length = 164
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
N PA + K KDPN PKRP SA F+F E+R + K +HP S+ V K GE W
Sbjct: 25 NLHPAPPKGEPKKKFKDPNAPKRPPSA-FLFCSEYRPKTKGEHP-GLSLGDVAKKLGEMW 82
Query: 78 KSMS 81
+ +
Sbjct: 83 NNTA 86
>gi|195381989|ref|XP_002049715.1| GJ21748 [Drosophila virilis]
gi|194144512|gb|EDW60908.1| GJ21748 [Drosophila virilis]
Length = 112
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
+KPKRP SA+ +++ RE K+++P K V V K GGE W++M
Sbjct: 3 DKPKRPLSAYMLWLNSARESIKRENPGIK-VTEVAKRGGELWRAM 46
>gi|90075924|dbj|BAE87642.1| unnamed protein product [Macaca fascicularis]
Length = 416
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 8/73 (10%)
Query: 13 AKLSVNKKPAKA--GRKSGK-AAKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVA 67
++LS N AKA SG +A PNK KRP +AF +F +++R +Y + +P N++++
Sbjct: 325 SQLSSNSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAIS 384
Query: 68 AVGKAGGEKWKSM 80
+ G++WK M
Sbjct: 385 VI---LGDRWKKM 394
>gi|340520749|gb|EGR50985.1| predicted protein [Trichoderma reesei QM6a]
Length = 83
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+DPN PKR SA+ F E RE ++++P S VGK GE+WK++++
Sbjct: 2 QDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKALND 50
>gi|238576322|ref|XP_002387994.1| hypothetical protein MPER_13045 [Moniliophthora perniciosa FA553]
gi|215448913|gb|EEB88924.1| hypothetical protein MPER_13045 [Moniliophthora perniciosa FA553]
Length = 215
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
K KDPN PKR SA+ F +++R++ K ++P A+ GK G KWK + E
Sbjct: 118 KPKKDPNAPKRALSAYMFFSQDWRDRIKTENPD----ASFGKLLGAKWKELDE 166
>gi|297706944|ref|XP_002830283.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pongo abelii]
Length = 125
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+ PN PKRP S FF+F EF + K +P S+ V K GE W ++
Sbjct: 18 PAKGGKNH------PNAPKRPLSGFFLFCSEFCPKIKSTNP-GISIGDVVKKLGEMWNNL 70
Query: 81 SEA 83
+++
Sbjct: 71 NDS 73
>gi|194882008|ref|XP_001975105.1| GG22136 [Drosophila erecta]
gi|190658292|gb|EDV55505.1| GG22136 [Drosophila erecta]
Length = 111
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
+KPKRP SA+ +++ RE K+++P K V V K GGE W++M
Sbjct: 3 DKPKRPLSAYMLWLNSARESIKRENPGIK-VTEVAKRGGELWRAM 46
>gi|256070479|ref|XP_002571570.1| high mobility group protein [Schistosoma mansoni]
gi|97976778|tpe|CAJ29301.1| TPA: putative high mobility group B2 protein [Schistosoma
mansoni]
gi|353230496|emb|CCD76667.1| high mobility group protein [Schistosoma mansoni]
Length = 226
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSV-AAVGKAGGEKWKSMS 81
KD NKPK P SA+ F++ RE++KK HP + V + K E+WK M+
Sbjct: 4 TKDKNKPKGPMSAYACFVQVIREEHKKKHPGEQIVFSDFSKKCAERWKLMT 54
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DP P R SAFF F +EFR + ++ +P K VA + K G +W++ +
Sbjct: 96 DPTVPARAWSAFFFFCDEFRSKVRESNPDWK-VADIAKELGRQWETCQD 143
>gi|195486377|ref|XP_002091483.1| HmgD [Drosophila yakuba]
gi|38047835|gb|AAR09820.1| similar to Drosophila melanogaster HmgD, partial [Drosophila
yakuba]
gi|194177584|gb|EDW91195.1| HmgD [Drosophila yakuba]
Length = 111
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
+KPKRP SA+ +++ RE K+++P K V V K GGE W++M
Sbjct: 3 DKPKRPLSAYMLWLNSARESIKRENPGIK-VTEVAKRGGELWRAM 46
>gi|196005089|ref|XP_002112411.1| hypothetical protein TRIADDRAFT_56397 [Trichoplax adhaerens]
gi|190584452|gb|EDV24521.1| hypothetical protein TRIADDRAFT_56397 [Trichoplax adhaerens]
Length = 253
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYK-KDHPKNKSVAAVGKAGGEKWKSMSEA 83
DP+KPKRP +A+F F+ EFR+ K K + K + ++ GEKW++M+ A
Sbjct: 135 DPDKPKRPQTAYFYFLAEFRKAMKAKGVIEGKKLTSL---SGEKWRAMTPA 182
>gi|332237987|ref|XP_003268185.1| PREDICTED: HMG box-containing protein 1 isoform 1 [Nomascus
leucogenys]
Length = 524
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 8/73 (10%)
Query: 13 AKLSVNKKPAKA--GRKSGK-AAKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVA 67
++LS N AKA SG +A PNK KRP +AF +F +++R +Y + +P N++++
Sbjct: 416 SQLSSNSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAIS 475
Query: 68 AVGKAGGEKWKSM 80
+ G++WK M
Sbjct: 476 VI---LGDRWKKM 485
>gi|338815383|gb|AEJ08754.1| HMGB-like protein [Crassostrea ariakensis]
Length = 202
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
AG K K AKDP+ PKR SAFF F + R + HP+ SVA V K G++W+ ++
Sbjct: 84 AGGKRKKRAKDPSAPKRALSAFFFFCADERPDVRAAHPEW-SVAEVAKELGKRWEKVT 140
>gi|332237989|ref|XP_003268186.1| PREDICTED: HMG box-containing protein 1 isoform 2 [Nomascus
leucogenys]
Length = 514
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 8/73 (10%)
Query: 13 AKLSVNKKPAKA--GRKSGK-AAKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVA 67
++LS N AKA SG +A PNK KRP +AF +F +++R +Y + +P N++++
Sbjct: 406 SQLSSNSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAIS 465
Query: 68 AVGKAGGEKWKSM 80
+ G++WK M
Sbjct: 466 VI---LGDRWKKM 475
>gi|242006908|ref|XP_002424284.1| predicted protein [Pediculus humanus corporis]
gi|212507684|gb|EEB11546.1| predicted protein [Pediculus humanus corporis]
Length = 768
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
N PKRP SA+F++M E R++ K+++P N + + K GE W+ +
Sbjct: 542 NAPKRPPSAYFIWMNENRDKLKEEYP-NLQMTELAKKAGEVWREL 585
>gi|194391186|dbj|BAG60711.1| unnamed protein product [Homo sapiens]
Length = 433
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 8/74 (10%)
Query: 12 NAKLSVNKKPAKA--GRKSGK-AAKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSV 66
+++LS N AKA SG +A PNK KRP +AF +F +++R +Y + +P N+++
Sbjct: 324 SSQLSSNSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAI 383
Query: 67 AAVGKAGGEKWKSM 80
+ + G++WK M
Sbjct: 384 SVI---LGDRWKKM 394
>gi|395818451|ref|XP_003782642.1| PREDICTED: HMG box-containing protein 1 isoform 3 [Otolemur
garnettii]
Length = 531
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 8/73 (10%)
Query: 13 AKLSVNKKPAKA--GRKSGK-AAKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVA 67
++LS N AKA SG +A PNK KRP +AF +F +++R +Y + +P N++++
Sbjct: 423 SQLSSNSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAIS 482
Query: 68 AVGKAGGEKWKSM 80
+ G++WK M
Sbjct: 483 VI---LGDRWKKM 492
>gi|442755991|gb|JAA70155.1| Putative dorsal switch protein 1 [Ixodes ricinus]
Length = 207
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 12 NAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGK 71
+++++ K P K K KDPN PKRP SAFF F + R +++ P + SV V K
Sbjct: 70 DSEMADYKPPKGEKSKKRKRTKDPNAPKRPLSAFFWFCNDERPNVRQESP-DASVGEVAK 128
Query: 72 AGGEKWKSMSE 82
G +W + +
Sbjct: 129 ELGRRWNDVGD 139
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSE 82
+KP+ SA+ F++ RE++KK HP +N A K E+WK+MS+
Sbjct: 5 DKPRGRMSAYAFFVQTCREEHKKKHPTENVVFAEFSKKCAERWKTMSD 52
>gi|326911218|ref|XP_003201958.1| PREDICTED: HMG box-containing protein 1-like [Meleagris gallopavo]
Length = 517
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSM 80
+G S +A PNK KRP +AF +F +++R +Y + +P N++++ + G++WK M
Sbjct: 423 SGTASTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVI---LGDRWKKM 478
>gi|444727550|gb|ELW68036.1| High mobility group protein B1 [Tupaia chinensis]
Length = 149
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
K+P+ PKRP SAFF+F E+R + K +HP S+ K GE W
Sbjct: 89 KNPSAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIDDAAKKLGEMW 132
>gi|321476548|gb|EFX87508.1| hypothetical protein DAPPUDRAFT_306496 [Daphnia pulex]
Length = 191
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAV 84
K KDPN PKR SAFF F + R K+ HP+ ++ + K G +W +A
Sbjct: 94 KQVKDPNAPKRSLSAFFWFCHDLRGHVKEQHPEY-TLGEIAKELGRRWGVSDDAT 147
>gi|346716352|ref|NP_001231191.1| HMG box-containing protein 1 isoform 1 [Homo sapiens]
gi|397479919|ref|XP_003811248.1| PREDICTED: HMG box-containing protein 1 isoform 1 [Pan paniscus]
gi|194381488|dbj|BAG58698.1| unnamed protein product [Homo sapiens]
Length = 524
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 8/73 (10%)
Query: 13 AKLSVNKKPAKA--GRKSGK-AAKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVA 67
++LS N AKA SG +A PNK KRP +AF +F +++R +Y + +P N++++
Sbjct: 416 SQLSSNSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAIS 475
Query: 68 AVGKAGGEKWKSM 80
+ G++WK M
Sbjct: 476 VI---LGDRWKKM 485
>gi|386781927|ref|NP_001247949.1| HMG box-containing protein 1 [Macaca mulatta]
gi|402864516|ref|XP_003896507.1| PREDICTED: HMG box-containing protein 1 isoform 2 [Papio anubis]
gi|402864518|ref|XP_003896508.1| PREDICTED: HMG box-containing protein 1 isoform 3 [Papio anubis]
gi|380788063|gb|AFE65907.1| HMG box-containing protein 1 isoform 2 [Macaca mulatta]
gi|384946436|gb|AFI36823.1| HMG box-containing protein 1 [Macaca mulatta]
Length = 514
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 8/73 (10%)
Query: 13 AKLSVNKKPAKA--GRKSGK-AAKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVA 67
++LS N AKA SG +A PNK KRP +AF +F +++R +Y + +P N++++
Sbjct: 406 SQLSSNSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAIS 465
Query: 68 AVGKAGGEKWKSM 80
+ G++WK M
Sbjct: 466 VI---LGDRWKKM 475
>gi|21361411|ref|NP_036389.2| HMG box-containing protein 1 isoform 2 [Homo sapiens]
gi|350534570|ref|NP_001233326.1| HMG box-containing protein 1 [Pan troglodytes]
gi|397479921|ref|XP_003811249.1| PREDICTED: HMG box-containing protein 1 isoform 2 [Pan paniscus]
gi|71152106|sp|O60381.2|HBP1_HUMAN RecName: Full=HMG box-containing protein 1; AltName: Full=HMG box
transcription factor 1; AltName: Full=High mobility
group box transcription factor 1
gi|16877650|gb|AAH17069.1| HMG-box transcription factor 1 [Homo sapiens]
gi|119603798|gb|EAW83392.1| HMG-box transcription factor 1, isoform CRA_a [Homo sapiens]
gi|119603800|gb|EAW83394.1| HMG-box transcription factor 1, isoform CRA_a [Homo sapiens]
gi|123981346|gb|ABM82502.1| HMG-box transcription factor 1 [synthetic construct]
gi|193783747|dbj|BAG53729.1| unnamed protein product [Homo sapiens]
gi|208966488|dbj|BAG73258.1| HMG-box transcription factor 1 [synthetic construct]
gi|343961093|dbj|BAK62136.1| HMG box-containing protein 1 [Pan troglodytes]
Length = 514
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 8/73 (10%)
Query: 13 AKLSVNKKPAKA--GRKSGK-AAKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVA 67
++LS N AKA SG +A PNK KRP +AF +F +++R +Y + +P N++++
Sbjct: 406 SQLSSNSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAIS 465
Query: 68 AVGKAGGEKWKSM 80
+ G++WK M
Sbjct: 466 VI---LGDRWKKM 475
>gi|403257047|ref|XP_003921149.1| PREDICTED: HMG box-containing protein 1 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 524
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 8/73 (10%)
Query: 13 AKLSVNKKPAKA--GRKSGK-AAKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVA 67
++LS N AKA SG +A PNK KRP +AF +F +++R +Y + +P N++++
Sbjct: 416 SQLSSNSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAIS 475
Query: 68 AVGKAGGEKWKSM 80
+ G++WK M
Sbjct: 476 VI---LGDRWKKM 485
>gi|328857376|gb|EGG06493.1| hypothetical protein MELLADRAFT_71918 [Melampsora larici-populina
98AG31]
Length = 444
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+DPN PKRPASA+ +F R++ + +P + + G++WKS+ E
Sbjct: 180 RDPNAPKRPASAYILFQNAVRQEMRAANP-TADYKELARQIGDRWKSLDE 228
>gi|407404609|gb|EKF29994.1| high mobility group protein, putative [Trypanosoma cruzi
marinkellei]
Length = 361
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAV 84
KD N PKR SA+F F +FR K HP + SV KA G WK +S+ +
Sbjct: 290 VKDENAPKRSMSAYFFFASDFR----KKHP-DLSVTETSKAAGAAWKELSDEM 337
>gi|402864514|ref|XP_003896506.1| PREDICTED: HMG box-containing protein 1 isoform 1 [Papio anubis]
Length = 524
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 8/73 (10%)
Query: 13 AKLSVNKKPAKA--GRKSGK-AAKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVA 67
++LS N AKA SG +A PNK KRP +AF +F +++R +Y + +P N++++
Sbjct: 416 SQLSSNSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAIS 475
Query: 68 AVGKAGGEKWKSM 80
+ G++WK M
Sbjct: 476 VI---LGDRWKKM 485
>gi|426357492|ref|XP_004046072.1| PREDICTED: HMG box-containing protein 1 isoform 2 [Gorilla gorilla
gorilla]
Length = 514
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 8/73 (10%)
Query: 13 AKLSVNKKPAKA--GRKSGK-AAKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVA 67
++LS N AKA SG +A PNK KRP +AF +F +++R +Y + +P N++++
Sbjct: 406 SQLSSNSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAIS 465
Query: 68 AVGKAGGEKWKSM 80
+ G++WK M
Sbjct: 466 VI---LGDRWKKM 475
>gi|73981739|ref|XP_848983.1| PREDICTED: HMG box-containing protein 1 isoform 2 [Canis lupus
familiaris]
Length = 522
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 8/73 (10%)
Query: 13 AKLSVNKKPAKA--GRKSGK-AAKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVA 67
++LS N AKA SG +A PNK KRP +AF +F +++R +Y + +P N++++
Sbjct: 414 SQLSSNSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAIS 473
Query: 68 AVGKAGGEKWKSM 80
+ G++WK M
Sbjct: 474 VI---LGDRWKKM 483
>gi|395818449|ref|XP_003782641.1| PREDICTED: HMG box-containing protein 1 isoform 2 [Otolemur
garnettii]
Length = 514
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 8/73 (10%)
Query: 13 AKLSVNKKPAKA--GRKSGK-AAKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVA 67
++LS N AKA SG +A PNK KRP +AF +F +++R +Y + +P N++++
Sbjct: 406 SQLSSNSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAIS 465
Query: 68 AVGKAGGEKWKSM 80
+ G++WK M
Sbjct: 466 VI---LGDRWKKM 475
>gi|395818447|ref|XP_003782640.1| PREDICTED: HMG box-containing protein 1 isoform 1 [Otolemur
garnettii]
Length = 524
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 8/73 (10%)
Query: 13 AKLSVNKKPAKA--GRKSGK-AAKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVA 67
++LS N AKA SG +A PNK KRP +AF +F +++R +Y + +P N++++
Sbjct: 416 SQLSSNSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAIS 475
Query: 68 AVGKAGGEKWKSM 80
+ G++WK M
Sbjct: 476 VI---LGDRWKKM 485
>gi|320165273|gb|EFW42172.1| structure-specific recognition protein 1 [Capsaspora owczarzaki
ATCC 30864]
Length = 796
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 17 VNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEK 76
V K P K+ + KAAKD N PK+P S++ ++ E R +K +P + +V +G G
Sbjct: 659 VRKAPKKSSSPTKKAAKDKNAPKKPMSSYMLWANENRAAFKAKNP-DANVMELGSILGNA 717
Query: 77 WKSMSEA 83
WK + E+
Sbjct: 718 WKELGES 724
>gi|189205162|ref|XP_001938916.1| non-histone chromosomal protein 6 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|330923152|ref|XP_003300124.1| hypothetical protein PTT_11280 [Pyrenophora teres f. teres 0-1]
gi|187986015|gb|EDU51503.1| non-histone chromosomal protein 6 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|311325919|gb|EFQ91802.1| hypothetical protein PTT_11280 [Pyrenophora teres f. teres 0-1]
Length = 106
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
PN PKR SA+ F E RE+ ++D+P K VGK GEKWK+++E
Sbjct: 25 PNAPKRGLSAYMFFANEQREKVREDNPGIK-FGEVGKLLGEKWKALNE 71
>gi|169409528|gb|ACA57879.1| High mobility group protein B3 (predicted) [Callicebus moloch]
Length = 193
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K + S+ V K GE W +++++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTN-LGISIGDVAKKLGEMWNNLNDS 137
>gi|303304752|emb|CBD77423.1| high mobility group box 2 protein [Plecoglossus altivelis]
Length = 215
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
DPN PKRP SAFFVF + R + K ++P S+ + K GE W
Sbjct: 92 DPNAPKRPPSAFFVFCSDHRARIKGENP-GISIGDIAKKLGELW 134
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
KDPNKP+ S++ F++ RE++KK HP + + K E+WK+MS
Sbjct: 4 KDPNKPRGKTSSYAFFVQTCREEHKKKHPGTSVNFSEFSKKCSERWKTMS 53
>gi|296209937|ref|XP_002751777.1| PREDICTED: HMG box-containing protein 1 isoform 1 [Callithrix
jacchus]
Length = 524
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 8/73 (10%)
Query: 13 AKLSVNKKPAKA--GRKSGK-AAKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVA 67
++LS N AKA SG +A PNK KRP +AF +F +++R +Y + +P N++++
Sbjct: 416 SQLSSNSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAIS 475
Query: 68 AVGKAGGEKWKSM 80
+ G++WK M
Sbjct: 476 VI---LGDRWKKM 485
>gi|195436362|ref|XP_002066137.1| GK22092 [Drosophila willistoni]
gi|194162222|gb|EDW77123.1| GK22092 [Drosophila willistoni]
Length = 730
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PKR +AF +++ E REQ K+D P K V + K GGE WK +
Sbjct: 555 PKRATTAFMLWLNETREQIKRDSPGIK-VTEIAKKGGEMWKEL 596
>gi|449480826|ref|XP_002192714.2| PREDICTED: HMG box-containing protein 1 [Taeniopygia guttata]
Length = 517
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKW 77
K +G S +A PNK KRP +AF +F +++R +Y + +P N++++ + G++W
Sbjct: 419 KSHSSGTASTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVI---LGDRW 475
Query: 78 KSM 80
K M
Sbjct: 476 KKM 478
>gi|5919143|gb|AAD56225.1|AF182038_1 HMG box-containing protein 1a [Homo sapiens]
gi|2995607|gb|AAC08317.1| HMG box containing protein 1 [Homo sapiens]
gi|119603799|gb|EAW83393.1| HMG-box transcription factor 1, isoform CRA_b [Homo sapiens]
Length = 514
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 8/73 (10%)
Query: 13 AKLSVNKKPAKA--GRKSGK-AAKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVA 67
++LS N AKA SG +A PNK KRP +AF +F +++R +Y + +P N++++
Sbjct: 406 SQLSSNSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAIS 465
Query: 68 AVGKAGGEKWKSM 80
+ G++WK M
Sbjct: 466 VI---LGDRWKKM 475
>gi|241122588|ref|XP_002403591.1| DNA-binding protein, putative [Ixodes scapularis]
gi|215493481|gb|EEC03122.1| DNA-binding protein, putative [Ixodes scapularis]
Length = 207
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 12 NAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGK 71
+++++ K P K K KDPN PKRP SAFF F + R +++ P + SV V K
Sbjct: 70 DSEMADYKPPKGEKSKKRKRTKDPNAPKRPLSAFFWFCNDERPNVRQESP-DASVGEVAK 128
Query: 72 AGGEKWKSMSE 82
G +W + +
Sbjct: 129 ELGRRWNDVGD 139
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHP-KNKSVAAVGKAGGEKWKSMSE 82
+KP+ SA+ F++ RE++KK HP +N A K E+WK+MSE
Sbjct: 5 DKPRGRMSAYAFFVQTCREEHKKKHPSENVVFAEFSKKCAERWKTMSE 52
>gi|426357490|ref|XP_004046071.1| PREDICTED: HMG box-containing protein 1 isoform 1 [Gorilla gorilla
gorilla]
Length = 524
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 8/73 (10%)
Query: 13 AKLSVNKKPAKA--GRKSGK-AAKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVA 67
++LS N AKA SG +A PNK KRP +AF +F +++R +Y + +P N++++
Sbjct: 416 SQLSSNSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAIS 475
Query: 68 AVGKAGGEKWKSM 80
+ G++WK M
Sbjct: 476 VI---LGDRWKKM 485
>gi|334348475|ref|XP_001362307.2| PREDICTED: HMG box-containing protein 1 [Monodelphis domestica]
Length = 525
Score = 42.4 bits (98), Expect = 0.034, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
K +G S +A PNK KRP +AF +F +++R +Y + +P K A+ G++WK
Sbjct: 427 KSHSSGTTSTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYP-GKDNRAISVILGDRWKK 485
Query: 80 M 80
M
Sbjct: 486 M 486
>gi|168021929|ref|XP_001763493.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685286|gb|EDQ71682.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 483
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DP +PK P SAFF F + R ++ NK V + K GE+WKSMS
Sbjct: 259 DPLRPKHPISAFFAFSQSRRPALLEE---NKPVTEIAKILGEEWKSMS 303
>gi|449278833|gb|EMC86572.1| HMG box-containing protein 1 [Columba livia]
Length = 515
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKW 77
K +G S +A PNK KRP +AF +F +++R +Y + +P N++++ + G++W
Sbjct: 419 KSHSSGTASTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVI---LGDRW 475
Query: 78 KSM 80
K M
Sbjct: 476 KKM 478
>gi|448079731|ref|XP_004194450.1| Piso0_004944 [Millerozyma farinosa CBS 7064]
gi|359375872|emb|CCE86454.1| Piso0_004944 [Millerozyma farinosa CBS 7064]
Length = 92
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
+++ + KDP+ PKR SA+ F E R+ + ++P S VGK GEKWK+MS
Sbjct: 7 KRASRKKKDPDAPKRSLSAYMFFANENRDIVRAENP-GISFGQVGKLLGEKWKAMS 61
>gi|242064692|ref|XP_002453635.1| hypothetical protein SORBIDRAFT_04g009610 [Sorghum bicolor]
gi|241933466|gb|EES06611.1| hypothetical protein SORBIDRAFT_04g009610 [Sorghum bicolor]
Length = 488
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 5/50 (10%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMS 81
DPN+PKRPAS+F +F +E R+Q ++ P N S+ A+ KWK +S
Sbjct: 409 DPNRPKRPASSFLLFSKEARKQLLEERPGINNSSLNALISV---KWKELS 455
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 39 KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
K+P SA+FV+ +E R + K+V +GK GE+WK+M+EA
Sbjct: 289 KQPMSAYFVYSQERRAALVAEK---KNVPEIGKITGEEWKNMTEA 330
>gi|355560904|gb|EHH17590.1| hypothetical protein EGK_14028, partial [Macaca mulatta]
gi|355747921|gb|EHH52418.1| hypothetical protein EGM_12855, partial [Macaca fascicularis]
Length = 509
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 8/73 (10%)
Query: 13 AKLSVNKKPAKA--GRKSGK-AAKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVA 67
++LS N AKA SG +A PNK KRP +AF +F +++R +Y + +P N++++
Sbjct: 406 SQLSSNSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAIS 465
Query: 68 AVGKAGGEKWKSM 80
+ G++WK M
Sbjct: 466 VI---LGDRWKKM 475
>gi|392574245|gb|EIW67382.1| hypothetical protein TREMEDRAFT_74569 [Tremella mesenterica DSM
1558]
Length = 351
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+DPN PKRP SA+ +F E R+Q +K +P+ +G +KWK +S+
Sbjct: 130 RDPNAPKRPPSAYIMFQNEVRDQMRKTNPEIAYKEVLGMI-SQKWKDLSD 178
>gi|72051831|ref|XP_792040.1| PREDICTED: high mobility group protein 1 homolog
[Strongylocentrotus purpuratus]
gi|115767180|ref|XP_001176807.1| PREDICTED: high mobility group protein 1 homolog
[Strongylocentrotus purpuratus]
Length = 204
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 17 VNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEK 76
+ +K AK GR+ +A KDP+ PKR SAFF+F + R K++H K+ SV + +A
Sbjct: 79 MKEKNAKGGRR--RAKKDPDAPKRNLSAFFLFSRDERGAIKQEH-KDWSVGKIAQALAAI 135
Query: 77 WKSMSEA 83
WK+++ A
Sbjct: 136 WKTITPA 142
>gi|393216095|gb|EJD01586.1| hypothetical protein FOMMEDRAFT_90339, partial [Fomitiporia
mediterranea MF3/22]
Length = 150
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 24 AGRKSGKA----AKDPNKPKRPASAFFVFMEEFR---EQYKKDHPKNKSVAAVGKAGGEK 76
A RK+GK+ KDPN PK+P SA+F+F++ R E+ K+ K A +
Sbjct: 25 AQRKAGKSRKGNIKDPNAPKKPLSAYFMFLQHIRADPERVKQVFGDEKETTAQSVLAAQT 84
Query: 77 WKSMSE 82
W++M++
Sbjct: 85 WRAMTD 90
>gi|403306298|ref|XP_003943676.1| PREDICTED: nucleolar transcription factor 1 [Saimiri boliviensis
boliviensis]
Length = 764
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 9/74 (12%)
Query: 15 LSVNKKPA------KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAA 68
L++NKKPA K ++ GK + KPKRP SA F+F EE R Q +++ P+ S +
Sbjct: 380 LNINKKPATSPASKKPAQEGGKGGSE--KPKRPVSAMFIFSEEKRRQLQEERPE-LSESE 436
Query: 69 VGKAGGEKWKSMSE 82
+ + W +SE
Sbjct: 437 LTRLLARMWNDLSE 450
>gi|403257049|ref|XP_003921150.1| PREDICTED: HMG box-containing protein 1 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 514
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 8/73 (10%)
Query: 13 AKLSVNKKPAKA--GRKSGK-AAKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVA 67
++LS N AKA SG +A PNK KRP +AF +F +++R +Y + +P N++++
Sbjct: 406 SQLSSNSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAIS 465
Query: 68 AVGKAGGEKWKSM 80
+ G++WK M
Sbjct: 466 VI---LGDRWKKM 475
>gi|403267260|ref|XP_003925762.1| PREDICTED: uncharacterized protein LOC101050525 [Saimiri
boliviensis boliviensis]
Length = 645
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DP+ PKRP S FF+F EFR + K +P S+ V K GE+ ++S++
Sbjct: 242 DPDAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKRLGERRNNLSDS 290
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
DP KPK SA+ F++ RE++KK +P+ + A K E+WK+MS
Sbjct: 161 DPKKPKGKVSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMS 209
>gi|347441690|emb|CCD34611.1| similar to transcription factor HMG [Botryotinia fuckeliana]
Length = 101
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSG 86
DPN PKR SA+ F E R+ ++++P S VGK GE+WK+++E G
Sbjct: 20 DPNAPKRGLSAYMFFANEQRDNVREENP-GISFGQVGKVLGERWKALNEKQRG 71
>gi|19114226|ref|NP_593314.1| High-mobility group non-histone chromatin protein (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74627097|sp|P87057.1|NHP6_SCHPO RecName: Full=Non-histone chromosomal protein 6
gi|2058376|emb|CAB08172.1| High-mobility group non-histone chromatin protein (predicted)
[Schizosaccharomyces pombe]
Length = 108
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 22 AKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
AK+ RK KDPN PKR SAF F E RE+ K D+P + + +G G++WK ++
Sbjct: 5 AKSSRK-----KDPNTPKRNMSAFMFFSIENREKMKTDNP-DATFGQLGSLLGKRWKELT 58
>gi|410966739|ref|XP_003989887.1| PREDICTED: high mobility group protein B4 [Felis catus]
Length = 193
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
G+K + +DP P+RP S+F +F ++ Q K+++P N SV V KA G+ W + +
Sbjct: 82 GKKKKRRKRDPYAPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKASGKMWSATT 137
>gi|18490183|gb|AAH22329.1| HMG-box transcription factor 1 [Homo sapiens]
Length = 514
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 8/73 (10%)
Query: 13 AKLSVNKKPAKA--GRKSGK-AAKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVA 67
++LS N AKA SG +A PNK KRP +AF +F +++R +Y + +P N++++
Sbjct: 406 SQLSSNSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAIS 465
Query: 68 AVGKAGGEKWKSM 80
+ G++WK M
Sbjct: 466 VI---LGDRWKKM 475
>gi|327273566|ref|XP_003221551.1| PREDICTED: HMG box-containing protein 1-like [Anolis carolinensis]
Length = 575
Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 20 KPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKS 79
K +G + +A PNK KRP +AF +F +++R +Y + +P K A+ G++WK
Sbjct: 431 KSHSSGTATTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYP-GKDNRAISVILGDRWKK 489
Query: 80 M 80
M
Sbjct: 490 M 490
>gi|159162245|pdb|1E7J|A Chain A, Hmg-D Complexed To A Bulge Dna
Length = 74
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+KPKRP SA+ +++ RE K+++P K V V K GGE W++M +
Sbjct: 3 DKPKRPLSAYMLWLNSARESIKRENPGIK-VTEVAKRGGELWRAMKD 48
>gi|444730108|gb|ELW70503.1| High mobility group protein B1 [Tupaia chinensis]
Length = 140
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKRP AFF+F E+R + K + S+ V K GE W + +
Sbjct: 16 KDPNAPKRPPLAFFLFCSEYRRKIKGEQ-SGLSIGDVAKKLGEMWNNTA 63
>gi|354484377|ref|XP_003504365.1| PREDICTED: high mobility group protein B2-like [Cricetulus griseus]
Length = 264
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
N PKRP SAFF+F E R + K +HP S+ K GE W S
Sbjct: 147 NAPKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQS 191
>gi|313217945|emb|CBY41316.1| unnamed protein product [Oikopleura dioica]
gi|313245828|emb|CBY34818.1| unnamed protein product [Oikopleura dioica]
Length = 200
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DPN PKRPA+AFF+F RE+ K + V V K GE WK +S
Sbjct: 92 DPNAPKRPATAFFLFSTANREKAKAQLEEGAKVGDVAKKLGEMWKLVS 139
>gi|126274287|ref|XP_001387507.1| Nonhistone chromosomal protein 6A [Scheffersomyces stipitis CBS
6054]
gi|126213377|gb|EAZ63484.1| Nonhistone chromosomal protein 6A, partial [Scheffersomyces
stipitis CBS 6054]
Length = 85
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
RK+ + KDP+ PKR SA+ F E R+ + ++P S VGK GEKWK+++
Sbjct: 6 RKATRKKKDPDAPKRSLSAYMFFANENRDIVRAENP-GISFGQVGKLLGEKWKALT 60
>gi|296209939|ref|XP_002751778.1| PREDICTED: HMG box-containing protein 1 isoform 2 [Callithrix
jacchus]
gi|296209941|ref|XP_002751779.1| PREDICTED: HMG box-containing protein 1 isoform 3 [Callithrix
jacchus]
Length = 514
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 8/73 (10%)
Query: 13 AKLSVNKKPAKA--GRKSGK-AAKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVA 67
++LS N AKA SG +A PNK KRP +AF +F +++R +Y + +P N++++
Sbjct: 406 SQLSSNSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAIS 465
Query: 68 AVGKAGGEKWKSM 80
+ G++WK M
Sbjct: 466 VI---LGDRWKKM 475
>gi|170056683|ref|XP_001864141.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167876428|gb|EDS39811.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 372
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAV 84
KA KDPN PKR SAFF F E R + K +P+ V + K G KW M V
Sbjct: 224 KAFKDPNAPKRSLSAFFWFCHEERNKVKALNPE-YGVGDIAKELGRKWSDMDAEV 277
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSV-AAVGKAGGEKWKSM 80
NKP+ +A+ F++ RE++KK HP+ + + A + E+WK+M
Sbjct: 138 NKPRGRMTAYAFFVQTCREEHKKKHPEEQVIFAEFSRKCAERWKTM 183
>gi|6730529|pdb|1QRV|A Chain A, Crystal Structure Of The Complex Of Hmg-D And Dna
gi|6730530|pdb|1QRV|B Chain B, Crystal Structure Of The Complex Of Hmg-D And Dna
Length = 73
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+KPKRP SA+ +++ RE K+++P K V V K GGE W++M +
Sbjct: 2 DKPKRPLSAYMLWLNSARESIKRENPGIK-VTEVAKRGGELWRAMKD 47
>gi|24657284|ref|NP_726109.1| high mobility group protein D, isoform A [Drosophila
melanogaster]
gi|24657287|ref|NP_726110.1| high mobility group protein D, isoform B [Drosophila
melanogaster]
gi|281363985|ref|NP_001163244.1| high mobility group protein D, isoform C [Drosophila
melanogaster]
gi|195346535|ref|XP_002039813.1| GM15859 [Drosophila sechellia]
gi|195585534|ref|XP_002082536.1| GD11622 [Drosophila simulans]
gi|729733|sp|Q05783.1|HMGD_DROME RecName: Full=High mobility group protein D; Short=HMG-D
gi|157626|gb|AAA28609.1| high mobility group protein [Drosophila melanogaster]
gi|296943|emb|CAA50468.1| Hmg-D protein [Drosophila melanogaster]
gi|7291330|gb|AAF46759.1| high mobility group protein D, isoform A [Drosophila
melanogaster]
gi|21392016|gb|AAM48362.1| LD24628p [Drosophila melanogaster]
gi|21645449|gb|AAM71011.1| high mobility group protein D, isoform B [Drosophila
melanogaster]
gi|116805826|emb|CAL26283.1| CG17950 [Drosophila melanogaster]
gi|116805828|emb|CAL26284.1| CG17950 [Drosophila melanogaster]
gi|116805830|emb|CAL26285.1| CG17950 [Drosophila melanogaster]
gi|116805832|emb|CAL26286.1| CG17950 [Drosophila melanogaster]
gi|116805834|emb|CAL26287.1| CG17950 [Drosophila melanogaster]
gi|116805836|emb|CAL26288.1| CG17950 [Drosophila melanogaster]
gi|116805838|emb|CAL26289.1| CG17950 [Drosophila melanogaster]
gi|116805840|emb|CAL26290.1| CG17950 [Drosophila melanogaster]
gi|116805842|emb|CAL26291.1| CG17950 [Drosophila melanogaster]
gi|116805844|emb|CAL26292.1| CG17950 [Drosophila melanogaster]
gi|116805846|emb|CAL26293.1| CG17950 [Drosophila melanogaster]
gi|116805848|emb|CAL26294.1| CG17950 [Drosophila simulans]
gi|194135162|gb|EDW56678.1| GM15859 [Drosophila sechellia]
gi|194194545|gb|EDX08121.1| GD11622 [Drosophila simulans]
gi|220943924|gb|ACL84505.1| HmgD-PA [synthetic construct]
gi|220953800|gb|ACL89443.1| HmgD-PA [synthetic construct]
gi|223967235|emb|CAR93348.1| CG17950-PA [Drosophila melanogaster]
gi|223967237|emb|CAR93349.1| CG17950-PA [Drosophila melanogaster]
gi|223967239|emb|CAR93350.1| CG17950-PA [Drosophila melanogaster]
gi|223967241|emb|CAR93351.1| CG17950-PA [Drosophila melanogaster]
gi|223967243|emb|CAR93352.1| CG17950-PA [Drosophila melanogaster]
gi|223967245|emb|CAR93353.1| CG17950-PA [Drosophila melanogaster]
gi|223967247|emb|CAR93354.1| CG17950-PA [Drosophila melanogaster]
gi|223967249|emb|CAR93355.1| CG17950-PA [Drosophila melanogaster]
gi|223967251|emb|CAR93356.1| CG17950-PA [Drosophila melanogaster]
gi|223967253|emb|CAR93357.1| CG17950-PA [Drosophila melanogaster]
gi|223967255|emb|CAR93358.1| CG17950-PA [Drosophila melanogaster]
gi|223967257|emb|CAR93359.1| CG17950-PA [Drosophila melanogaster]
gi|272432624|gb|ACZ94516.1| high mobility group protein D, isoform C [Drosophila
melanogaster]
Length = 112
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+KPKRP SA+ +++ RE K+++P K V V K GGE W++M +
Sbjct: 3 DKPKRPLSAYMLWLNSARESIKRENPGIK-VTEVAKRGGELWRAMKD 48
>gi|395526464|ref|XP_003765383.1| PREDICTED: high mobility group protein B4 [Sarcophilus harrisii]
Length = 207
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DP PKRP S+FF+F E + K D+P + SV V K GE W SE
Sbjct: 92 DPKAPKRPPSSFFLFSREHYTKIKSDNP-HWSVVQVAKLLGEMWSKKSE 139
>gi|355694194|gb|AER99588.1| HMG-box transcription factor 1 [Mustela putorius furo]
Length = 158
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 8/74 (10%)
Query: 12 NAKLSVNKKPAKA--GRKSGK-AAKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSV 66
+++LS N AKA SG +A PNK KRP +AF +F +++R +Y + +P N+++
Sbjct: 50 SSQLSSNSLYAKAVKTHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAI 109
Query: 67 AAVGKAGGEKWKSM 80
+ + G++WK M
Sbjct: 110 SVI---LGDRWKKM 120
>gi|121705796|ref|XP_001271161.1| nucleosome binding protein (Nhp6a), putative [Aspergillus
clavatus NRRL 1]
gi|119399307|gb|EAW09735.1| nucleosome binding protein (Nhp6a), putative [Aspergillus
clavatus NRRL 1]
Length = 104
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
KDPN PKR SA+ F + R++ ++++P S VGK GE+WK++S++
Sbjct: 20 KDPNAPKRGLSAYMFFANDNRDKVREENP-GISFGQVGKMLGERWKALSDS 69
>gi|395857899|ref|XP_003801318.1| PREDICTED: high mobility group protein B4 [Otolemur garnettii]
Length = 187
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
G++ + KDP P+RP S+F +F ++ Q K+++P N SV V KA G+ W
Sbjct: 80 GKRKKRRKKDPQAPRRPPSSFLLFCKDHYAQLKRENP-NWSVVQVAKASGKMW 131
>gi|159162413|pdb|1HMA|A Chain A, The Solution Structure And Dynamics Of The Dna Binding
Domain Of Hmg-D From Drosophila Melanogaster
Length = 73
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+KPKRP SA+ +++ RE K+++P K V V K GGE W++M +
Sbjct: 2 DKPKRPLSAYMLWLNSARESIKRENPGIK-VTEVAKRGGELWRAMKD 47
>gi|307191139|gb|EFN74837.1| High mobility group protein DSP1 [Camponotus floridanus]
Length = 205
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
+++P + R+ K +D + PKR SAFF F +E R + ++ HP+ V + K G+ W
Sbjct: 103 HEEPERPTRRGTKRYRDKDAPKRALSAFFYFCQELRGKMRELHPE-MGVGDIAKELGKLW 161
Query: 78 KS 79
S
Sbjct: 162 MS 163
>gi|2460169|gb|AAB71862.1| HMG box containing protein 1 [Homo sapiens]
Length = 514
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 8/73 (10%)
Query: 13 AKLSVNKKPAKA--GRKSGKA-AKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVA 67
++LS N AKA SG A PNK KRP +AF +F +++R +Y + +P N++++
Sbjct: 406 SQLSSNSLYAKAVKNHSSGTVIATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAIS 465
Query: 68 AVGKAGGEKWKSM 80
+ G++WK M
Sbjct: 466 VI---LGDRWKKM 475
>gi|354543436|emb|CCE40155.1| hypothetical protein CPAR2_101930 [Candida parapsilosis]
Length = 315
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Query: 33 KDPNKPKRPASAFFVFMEEFRE---QYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+DP+ PKRP +A+ +F E+ +E Q +++ P+N + + KA E WK +SE
Sbjct: 161 RDPDLPKRPTNAYLLFCEQEKERLRQQQQEDPEN-NTRDLSKAMTEAWKKLSE 212
>gi|344270446|ref|XP_003407055.1| PREDICTED: HMG box-containing protein 1 [Loxodonta africana]
Length = 491
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 8/73 (10%)
Query: 13 AKLSVNKKPAKA--GRKSGK-AAKDPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVA 67
++LS N AKA SG +A PNK KRP +AF +F +++R +Y + +P N++++
Sbjct: 383 SQLSSNSLYAKAVKNHSSGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAIS 442
Query: 68 AVGKAGGEKWKSM 80
+ G++WK M
Sbjct: 443 VI---LGDRWKKM 452
>gi|322797845|gb|EFZ19753.1| hypothetical protein SINV_15148 [Solenopsis invicta]
Length = 220
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 18 NKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
+++P + R+ K +D + PKR SAFF F +E R + ++ HP+ V + K G+ W
Sbjct: 118 HEEPERPTRRGTKRYRDKDAPKRALSAFFYFCQELRGKMRELHPE-MGVGDIAKELGKLW 176
Query: 78 KS 79
S
Sbjct: 177 MS 178
>gi|313227516|emb|CBY22663.1| unnamed protein product [Oikopleura dioica]
Length = 105
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNK------SVAAVGKAGGEKWK 78
RK+ +AA KPKRP SAFF+F E R Q +KD KN V + K G WK
Sbjct: 7 ARKTKEAATGAPKPKRPLSAFFLFAAEHRPQVRKDLEKNTKEGVKVRVGDIAKKIGVMWK 66
Query: 79 SM 80
++
Sbjct: 67 AI 68
>gi|444706070|gb|ELW47432.1| High mobility group protein B1 [Tupaia chinensis]
Length = 138
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKR SAF +F E+R + K +HP ++ V K GE W + +
Sbjct: 15 KDPNAPKRLPSAFLLFCFEYRPKIKGEHP-GLTIGDVAKKLGEMWNNTA 62
>gi|402078687|gb|EJT73952.1| high mobility group protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 323
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP + +F++M+ R D + + AV + G +W +MS+A
Sbjct: 112 DPNAPKRPLTPYFLYMQTARPIIAADLGSDAAKGAVQEEGQRRWGTMSQA 161
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.307 0.124 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,410,592,614
Number of Sequences: 23463169
Number of extensions: 47397262
Number of successful extensions: 160169
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1704
Number of HSP's successfully gapped in prelim test: 1287
Number of HSP's that attempted gapping in prelim test: 156580
Number of HSP's gapped (non-prelim): 3983
length of query: 90
length of database: 8,064,228,071
effective HSP length: 60
effective length of query: 30
effective length of database: 6,656,437,931
effective search space: 199693137930
effective search space used: 199693137930
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 69 (31.2 bits)