BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034575
(90 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P93047|HMGB3_ARATH High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3
PE=1 SV=1
Length = 141
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/83 (73%), Positives = 72/83 (86%), Gaps = 3/83 (3%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR+ KLSV KKPAK + AAKDPNKPKRP+SAFFVFME+FR YK++H
Sbjct: 1 MKGAKSKAETRSTKLSVTKKPAKGAKG---AAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 57
Query: 61 PKNKSVAAVGKAGGEKWKSMSEA 83
PKNKSVAAVGKAGGEKWKS+S++
Sbjct: 58 PKNKSVAAVGKAGGEKWKSLSDS 80
>sp|O49596|HMGB2_ARATH High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2
PE=1 SV=1
Length = 144
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/83 (71%), Positives = 72/83 (86%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKG KSK++TR++KLSV KKPAK + AAKDPNKPKRPASAFFVFME+FRE +KK++
Sbjct: 1 MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60
Query: 61 PKNKSVAAVGKAGGEKWKSMSEA 83
PKNKSVA VGKA G+KWKS+S++
Sbjct: 61 PKNKSVATVGKAAGDKWKSLSDS 83
>sp|P40620|HMGL_VICFA HMG1/2-like protein OS=Vicia faba PE=2 SV=1
Length = 149
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 69/89 (77%), Gaps = 7/89 (7%)
Query: 1 MKGGKSKSDTRNA--KLSVNKKPAKAGRKSGKAA-----KDPNKPKRPASAFFVFMEEFR 53
MKGGKSK +++ A KL+VNKK A A + K A KDPNKPKRP SAFFVFM +FR
Sbjct: 1 MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFR 60
Query: 54 EQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
EQYKKDHP NKSVAAVGKA GE+WKS+SE
Sbjct: 61 EQYKKDHPNNKSVAAVGKACGEEWKSLSE 89
>sp|P26585|HMGL_SOYBN HMG1/2-like protein OS=Glycine max PE=2 SV=1
Length = 152
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/89 (66%), Positives = 72/89 (80%), Gaps = 6/89 (6%)
Query: 1 MKGGKSKSDTRNA--KLSVNKK-PAKAGRKS---GKAAKDPNKPKRPASAFFVFMEEFRE 54
MKGGKSK++++ A KL+VNKK A RK GKAAKDPNKPKRP SAFFVFMEEFR+
Sbjct: 1 MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60
Query: 55 QYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+ K+HP+NK+V+AVGKA G KWK+MS+A
Sbjct: 61 VFNKEHPENKAVSAVGKAAGAKWKTMSDA 89
>sp|P40619|HMGL_IPONI HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1
Length = 144
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/83 (66%), Positives = 66/83 (79%), Gaps = 2/83 (2%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDH 60
MKGGKSK+ + N KL+V KK A +K+ KA KDPNKPKRP SAFFVFME+FR+ YK+ H
Sbjct: 1 MKGGKSKAKSDN-KLAV-KKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKH 58
Query: 61 PKNKSVAAVGKAGGEKWKSMSEA 83
P NKSVA VGKAGG+KWK ++ A
Sbjct: 59 PNNKSVAVVGKAGGDKWKQLTAA 81
>sp|P27347|MNB1B_MAIZE DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1
Length = 157
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 71/88 (80%), Gaps = 7/88 (7%)
Query: 1 MKGGKSKSDTR-NAKLSVN----KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQ 55
MKG KSK + +AKL+V +KPAK GRK GKA KDPNKPKR SAFFVFMEEFR++
Sbjct: 1 MKGAKSKGAAKADAKLAVKSKGAEKPAK-GRK-GKAGKDPNKPKRAPSAFFVFMEEFRKE 58
Query: 56 YKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+K+ +PKNKSVAAVGKA G++WKS+SE+
Sbjct: 59 FKEKNPKNKSVAAVGKAAGDRWKSLSES 86
>sp|P40621|HMGL_WHEAT HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1
Length = 161
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 67/87 (77%), Gaps = 4/87 (4%)
Query: 1 MKGGKSKSDTR-NAKLSVNKKPAK---AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQY 56
MKG KSK + +AKL+V K A+ A K GKA KDPNKPKR SAFFVFM EFRE++
Sbjct: 1 MKGAKSKGAAKADAKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREEF 60
Query: 57 KKDHPKNKSVAAVGKAGGEKWKSMSEA 83
K+ +PKNKSVAAVGKA GE+WKS+SE+
Sbjct: 61 KQKNPKNKSVAAVGKAAGERWKSLSES 87
>sp|Q42344|HMGB4_ARATH High mobility group B protein 4 OS=Arabidopsis thaliana GN=HMGB4
PE=1 SV=1
Length = 138
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 61/83 (73%), Gaps = 5/83 (6%)
Query: 1 MKGGKSKSDTRNAKLSVNKKPAKAGRKSGKAAK-DPNKPKRPASAFFVFMEEFREQYKKD 59
MKGG+SK++ S +++ GRK+GK K DPN+PKRP SAFFVF+E+FR+++
Sbjct: 1 MKGGESKAEA----TSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLA 56
Query: 60 HPKNKSVAAVGKAGGEKWKSMSE 82
+P NKSVA VGKA G +WK+M++
Sbjct: 57 NPNNKSVATVGKAAGARWKAMTD 79
>sp|O49595|HMGB1_ARATH High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1
PE=1 SV=1
Length = 178
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 49/58 (84%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
RK KA KDPNKPKR SAFFVF+E+FR +KK++P K+V+AVGKAGG+KWKSMS+A
Sbjct: 41 RKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQA 98
>sp|O49597|HMGB5_ARATH High mobility group B protein 5 OS=Arabidopsis thaliana GN=HMGB5
PE=2 SV=1
Length = 125
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 45/58 (77%)
Query: 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
G K GK KDPN+PK+P S FFVF+++FR+++ +P NKSV VG+A G+KWK+M+E
Sbjct: 21 GNKVGKKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTE 78
>sp|O64702|HMG14_ARATH High mobility group B protein 14 OS=Arabidopsis thaliana GN=HMGB14
PE=2 SV=2
Length = 151
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 37/44 (84%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
PK+PA+AFF F+++FR+QY++++P KS+ +GK GEKWK+M+
Sbjct: 63 PKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTMT 106
>sp|Q8LDF9|HMGB7_ARATH High mobility group B protein 7 OS=Arabidopsis thaliana GN=HMGB7
PE=1 SV=1
Length = 241
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 39/54 (72%), Gaps = 3/54 (5%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVA-AVGKAGGEKWKSMSE 82
K++ NKPKRP +AFF+FM +FR+ +K +H N S+A K GGEKWKS++E
Sbjct: 107 KSSSTSNKPKRPLTAFFIFMSDFRKTFKSEH--NGSLAKDAAKIGGEKWKSLTE 158
>sp|Q04678|SSRP1_CHICK FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2
Length = 706
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 13 AKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKA 72
AK+ ++KP K +S K KDPN PKRP SA+ +++ RE+ K DHP S+ + K
Sbjct: 521 AKIVKDRKPRKKQVES-KKGKDPNAPKRPMSAYMLWLNANREKIKSDHP-GISITDLSKK 578
Query: 73 GGEKWKSMS 81
GE WK+MS
Sbjct: 579 AGELWKAMS 587
>sp|Q08943|SSRP1_MOUSE FACT complex subunit SSRP1 OS=Mus musculus GN=Ssrp1 PE=1 SV=2
Length = 708
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 20 KPAKAGRKSGKA--AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
K K+ RKS +A KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE W
Sbjct: 527 KDRKSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIW 585
Query: 78 KSMS 81
K MS
Sbjct: 586 KGMS 589
>sp|P07746|HMGT_ONCMY High mobility group-T protein OS=Oncorhynchus mykiss PE=2 SV=2
Length = 204
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
K KDPN PKRP+SAFF+F +FR Q K + P S+ V K GEKW +++
Sbjct: 86 KRFKDPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLT 136
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
KDP KP+ S++ F++ RE++KK HP+ + + + K E+WK+MS
Sbjct: 3 KDPRKPRGKMSSYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMS 52
>sp|Q08945|SSRP1_HUMAN FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP1 PE=1 SV=1
Length = 709
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP + K KDPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK
Sbjct: 533 KKPVEV-----KKGKDPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWK 586
Query: 79 SMS 81
MS
Sbjct: 587 GMS 589
>sp|Q4PBZ9|NHP6_USTMA Non-histone chromosomal protein 6 OS=Ustilago maydis (strain 521
/ FGSC 9021) GN=NHP6 PE=3 SV=2
Length = 99
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
+++ KA KDP+ PKRP SA+ F ++ RE+ K +P+ VG+ G KWK MSEA
Sbjct: 16 KRTTKAKKDPDAPKRPLSAYMFFSQDQRERVKNANPE-AGFGEVGRLLGAKWKEMSEA 72
>sp|P07156|HMGB1_CRIGR High mobility group protein B1 (Fragment) OS=Cricetulus griseus
GN=HMGB1 PE=1 SV=1
Length = 180
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W + +
Sbjct: 55 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTA 102
>sp|P63159|HMGB1_RAT High mobility group protein B1 OS=Rattus norvegicus GN=Hmgb1 PE=1
SV=2
Length = 215
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>sp|A9RA84|HMGB1_PAPAN High mobility group protein B1 OS=Papio anubis GN=HMGB1 PE=3 SV=1
Length = 215
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>sp|P63158|HMGB1_MOUSE High mobility group protein B1 OS=Mus musculus GN=Hmgb1 PE=1 SV=2
Length = 215
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>sp|Q4R844|HMGB1_MACFA High mobility group protein B1 OS=Macaca fascicularis GN=HMGB1 PE=2
SV=3
Length = 215
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>sp|P09429|HMGB1_HUMAN High mobility group protein B1 OS=Homo sapiens GN=HMGB1 PE=1 SV=3
Length = 215
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>sp|Q08IE6|HMGB1_HORSE High mobility group protein B1 OS=Equus caballus GN=HMGB1 PE=2 SV=3
Length = 215
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>sp|Q6YKA4|HMGB1_CANFA High mobility group protein B1 OS=Canis familiaris GN=HMGB1 PE=2
SV=3
Length = 215
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>sp|B1MTB0|HMGB1_CALMO High mobility group protein B1 OS=Callicebus moloch GN=HMGB1 PE=3
SV=1
Length = 215
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>sp|B0CM99|HMGB1_CALJA High mobility group protein B1 OS=Callithrix jacchus GN=HMGB1 PE=3
SV=1
Length = 215
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>sp|P10103|HMGB1_BOVIN High mobility group protein B1 OS=Bos taurus GN=HMGB1 PE=1 SV=3
Length = 215
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>sp|P0CO24|NHP6_CRYNJ Non-histone chromosomal protein 6 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=NHP6 PE=3 SV=1
Length = 116
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KDPNKPKR SA+ F++++RE+ K ++P+ + VGK G KW+ M+E
Sbjct: 23 KDPNKPKRALSAYMFFVQDYRERIKTENPE-ATFGDVGKLLGIKWREMNE 71
>sp|P0CO25|NHP6_CRYNB Non-histone chromosomal protein 6 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=NHP6 PE=3
SV=1
Length = 116
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
KDPNKPKR SA+ F++++RE+ K ++P+ + VGK G KW+ M+E
Sbjct: 23 KDPNKPKRALSAYMFFVQDYRERIKTENPE-ATFGDVGKLLGIKWREMNE 71
>sp|P12682|HMGB1_PIG High mobility group protein B1 OS=Sus scrofa GN=HMGB1 PE=2 SV=3
Length = 215
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+R + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK HP + + + K E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>sp|Q04931|SSRP1_RAT FACT complex subunit SSRP1 OS=Rattus norvegicus GN=Ssrp1 PE=1 SV=2
Length = 709
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81
DPN PKRP SA+ +++ RE+ K DHP S+ + K GE WK MS
Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHP-GISITDLSKKAGEIWKGMS 589
>sp|Q06943|HMGZ_DROME High mobility group protein Z OS=Drosophila melanogaster GN=HmgZ
PE=1 SV=1
Length = 111
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
++PKRP SA+ +++ E REQ KKD+P +K V + K GGE W+ + +
Sbjct: 4 DRPKRPLSAYMLWLNETREQIKKDNPGSK-VTDIAKRGGELWRGLKD 49
>sp|P40618|HMGB3_CHICK High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2
Length = 202
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKRP SAFF+F EFR + K +P S+ V K GE W ++S+
Sbjct: 89 DPNAPKRPPSAFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSD 136
>sp|P26584|HMGB2_CHICK High mobility group protein B2 OS=Gallus gallus GN=HMGB2 PE=2 SV=2
Length = 207
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
DPN PKRP SAFF+F E R + K DHP S+ K GE W
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHP-GLSIGDTAKKLGEMW 133
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEAVSG 86
DPNKP+ S++ F++ RE++KK HP + + A + E+WK+MS G
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKG 58
>sp|O54879|HMGB3_MOUSE High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3
Length = 200
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSD 136
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
SA+ F++ RE++KK +P+ + A K E+WK+MS
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMS 53
>sp|P0C6E5|HMG3M_HUMAN Putative high mobility group protein B3-like protein OS=Homo
sapiens PE=5 SV=1
Length = 187
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 21 PAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
PAK G+K KDPN PKRP S FF+F EF + K +P + V K GE WK++
Sbjct: 80 PAKGGKK-----KDPNAPKRPPSGFFLFCSEFCPKSKSTNP-GIPIGDVAKKLGEMWKNL 133
Query: 81 SEA 83
+++
Sbjct: 134 NDS 136
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
SA+ F++ RE++KK +PK + A K E+WK+MS
Sbjct: 14 SAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMS 53
>sp|B2RPK0|HGB1A_HUMAN Putative high mobility group protein B1-like 1 OS=Homo sapiens
GN=HMGB1P1 PE=5 SV=1
Length = 211
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKW 77
KDPN PKRP SAFF+F E+ + K +HP S+ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYHPKIKGEHP-GLSIGDVAKKLGEMW 133
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPK-NKSVAAVGKAGGEKWKSMS 81
DP KP+ S++ F++ RE++KK H + + + E+WK+MS
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMS 53
>sp|P36194|HMGB1_CHICK High mobility group protein B1 OS=Gallus gallus GN=HMGB1 PE=2 SV=2
Length = 201
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S+
Sbjct: 88 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSD 135
>sp|Q32L31|HMGB3_BOVIN High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2
Length = 200
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W ++S++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDS 137
>sp|Q9SUP7|HMGB6_ARATH High mobility group B protein 6 OS=Arabidopsis thaliana GN=HMGB6
PE=2 SV=1
Length = 456
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DP KPK P SAF V+ E R +++ NKSV V K GE+WK++S+
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALREE---NKSVVEVAKITGEEWKNLSD 296
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAAVGKAGGEKWKSMSE 82
DPNKPK+PAS++F+F ++ R++ ++ P N +V A+ KWK +SE
Sbjct: 375 DPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISL---KWKELSE 422
>sp|O15347|HMGB3_HUMAN High mobility group protein B3 OS=Homo sapiens GN=HMGB3 PE=1 SV=4
Length = 200
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKRP S FF+F EFR + K +P S+ V K GE W +++++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDS 137
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 43 SAFFVFMEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMS 81
SA+ F++ RE++KK +P+ + A K E+WK+MS
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMS 53
>sp|Q4IQX3|NHP6_GIBZE Non-histone chromosomal protein 6 OS=Gibberella zeae (strain PH-1
/ ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=NHP6 PE=3
SV=1
Length = 101
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+A KDPN PKR SA+ F E RE ++++P S VGK GE+WK+++E
Sbjct: 16 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GISFGQVGKLLGERWKALNE 67
>sp|Q7S045|NHP6_NEUCR Non-histone chromosomal protein 6 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=nhp-6 PE=3 SV=1
Length = 103
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
+A KDPN PKR SA+ F E RE ++++P S VGK GE+WK++S+
Sbjct: 18 RAKKDPNAPKRGLSAYMFFANEQRENVREENP-GVSFGQVGKILGERWKALSD 69
>sp|Q5B995|NHP6_EMENI Non-histone chromosomal protein 6 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=nhp6 PE=3 SV=1
Length = 106
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 22 AKAGRKSG-KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80
KA R++G + KDPN PKR SA+ F + R++ ++++P S VGK GEKWKS+
Sbjct: 10 TKATRETGGRKKKDPNAPKRGLSAYMFFANDNRDKVREENP-GISFGQVGKMLGEKWKSL 68
Query: 81 SE 82
S+
Sbjct: 69 SD 70
>sp|Q9T012|HMG13_ARATH High mobility group B protein 13 OS=Arabidopsis thaliana GN=HMGB13
PE=2 SV=1
Length = 446
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
DP KPK+P SA+ ++ E R K + NKSV V K GE+WK++SE
Sbjct: 242 DPLKPKQPISAYLIYANERRAALKGE---NKSVIEVAKMAGEEWKNLSE 287
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHP--KNKSVAA 68
DPNKPK+P S++F+F ++ R+ ++HP N +V A
Sbjct: 368 DPNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTA 404
>sp|Q02486|ABF2_YEAST ARS-binding factor 2, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ABF2 PE=1 SV=1
Length = 183
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAV 84
PKRP SA+F+++++ R Q+ K++P + A + K GEKW+++ +
Sbjct: 43 PKRPTSAYFLYLQDHRSQFVKENPTLRP-AEISKIAGEKWQNLEADI 88
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 7 KSDTRNAKLSVNKKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSV 66
++D + +S KK +K+ K + PK+PA F + E R Q HP +KS
Sbjct: 85 EADIKEKYISERKKLYSEYQKAKKEFDEKLPPKKPAGPFIKYANEVRSQVFAQHP-DKSQ 143
Query: 67 AAVGKAGGEKWKSMSEAV 84
+ K G+KW+S+ +++
Sbjct: 144 LDLMKIIGDKWQSLDQSI 161
>sp|Q9W602|SSRP1_XENLA FACT complex subunit SSRP1 OS=Xenopus laevis GN=ssrp1 PE=1 SV=1
Length = 693
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 19 KKPAKAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWK 78
KKP K + K KDP PKRP SA+ +++ RE+ K ++P S+ + K GE WK
Sbjct: 524 KKPRK--KPEAKKTKDPGAPKRPMSAYMLWLNASREKIKSENP-GISITDLSKKAGEIWK 580
Query: 79 SMS 81
+MS
Sbjct: 581 NMS 583
>sp|Q6CC79|NHP6_YARLI Non-histone chromosomal protein 6 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=NHP6 PE=3 SV=1
Length = 103
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83
DPN PKR SA+ F + R+ + D+P + VGKA GEKWK++++A
Sbjct: 21 DPNAPKRALSAYMFFANDNRDAIRADNP-GIAFGQVGKALGEKWKTLTDA 69
>sp|Q8WW32|HMGB4_HUMAN High mobility group protein B4 OS=Homo sapiens GN=HMGB4 PE=2 SV=2
Length = 186
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 24 AGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82
G++ + +DP +P+RP S+F +F ++ Q K+++P N SV V KA G+ W + ++
Sbjct: 79 VGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENP-NWSVVQVAKATGKMWSTATD 136
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.124 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,994,960
Number of Sequences: 539616
Number of extensions: 1166178
Number of successful extensions: 4528
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 187
Number of HSP's that attempted gapping in prelim test: 4195
Number of HSP's gapped (non-prelim): 444
length of query: 90
length of database: 191,569,459
effective HSP length: 60
effective length of query: 30
effective length of database: 159,192,499
effective search space: 4775774970
effective search space used: 4775774970
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)