Query 034575
Match_columns 90
No_of_seqs 114 out of 1031
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 04:17:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034575.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034575hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00199 high mobility group p 99.9 3.2E-22 7E-27 125.7 7.4 66 23-89 8-75 (94)
2 cd01389 MATA_HMG-box MATA_HMG- 99.8 1.5E-18 3.2E-23 104.9 5.6 52 37-89 1-52 (77)
3 cd01390 HMGB-UBF_HMG-box HMGB- 99.7 4.1E-18 8.8E-23 99.1 5.6 51 38-89 1-51 (66)
4 cd01388 SOX-TCF_HMG-box SOX-TC 99.7 7.3E-18 1.6E-22 100.8 5.7 51 38-89 2-52 (72)
5 COG5648 NHP6B Chromatin-associ 99.7 6.1E-18 1.3E-22 119.0 4.2 63 26-89 59-121 (211)
6 PF00505 HMG_box: HMG (high mo 99.7 2E-17 4.4E-22 97.0 4.8 51 38-89 1-51 (69)
7 smart00398 HMG high mobility g 99.7 4.3E-17 9.2E-22 95.2 5.7 52 37-89 1-52 (70)
8 cd00084 HMG-box High Mobility 99.7 9.1E-17 2E-21 92.8 5.6 51 38-89 1-51 (66)
9 PF09011 HMG_box_2: HMG-box do 99.6 3.5E-16 7.5E-21 93.7 5.1 54 35-89 1-55 (73)
10 KOG0381 HMG box-containing pro 99.6 4.3E-15 9.3E-20 92.4 6.5 55 34-89 17-73 (96)
11 KOG0527 HMG-box transcription 99.6 1.4E-15 3.1E-20 113.7 5.1 58 31-89 56-113 (331)
12 KOG0526 Nucleosome-binding fac 99.4 5.4E-13 1.2E-17 104.4 4.7 60 25-89 523-582 (615)
13 KOG3248 Transcription factor T 99.1 1.2E-10 2.5E-15 87.5 3.8 51 37-88 191-241 (421)
14 KOG4715 SWI/SNF-related matrix 99.0 2.9E-10 6.4E-15 84.9 3.7 58 31-89 58-115 (410)
15 KOG0528 HMG-box transcription 99.0 1.5E-10 3.3E-15 89.7 1.6 59 29-88 317-375 (511)
16 KOG2746 HMG-box transcription 98.3 2E-07 4.4E-12 74.8 1.6 59 30-89 174-234 (683)
17 PF06382 DUF1074: Protein of u 97.5 0.00013 2.8E-09 50.8 4.1 43 42-89 83-125 (183)
18 PF04690 YABBY: YABBY protein; 97.4 0.00061 1.3E-08 47.2 5.7 48 33-81 117-164 (170)
19 PF08073 CHDNT: CHDNT (NUC034) 97.0 0.0012 2.6E-08 37.8 3.4 40 42-82 13-52 (55)
20 PF14887 HMG_box_5: HMG (high 96.6 0.0045 9.8E-08 38.0 4.0 51 37-89 3-53 (85)
21 PF04769 MAT_Alpha1: Mating-ty 95.7 0.039 8.4E-07 39.1 5.7 45 31-80 37-81 (201)
22 PF06244 DUF1014: Protein of u 94.8 0.053 1.1E-06 35.7 4.0 46 37-83 71-117 (122)
23 COG5648 NHP6B Chromatin-associ 94.3 0.016 3.4E-07 41.4 0.7 53 36-89 142-194 (211)
24 KOG3223 Uncharacterized conser 84.9 1.6 3.4E-05 31.2 3.7 47 36-83 162-209 (221)
25 PRK15117 ABC transporter perip 76.6 1.8 4E-05 30.5 1.8 28 61-89 66-94 (211)
26 TIGR03481 HpnM hopanoid biosyn 76.6 1.8 4E-05 30.2 1.8 26 64-89 64-90 (198)
27 PF13875 DUF4202: Domain of un 75.1 8 0.00017 27.2 4.6 39 44-86 131-169 (185)
28 PF05494 Tol_Tol_Ttg2: Toluene 70.3 1.4 3E-05 29.6 -0.0 28 61-89 36-64 (170)
29 PF12650 DUF3784: Domain of un 53.3 5 0.00011 24.6 0.2 13 77-89 26-38 (97)
30 PF06945 DUF1289: Protein of u 53.0 11 0.00025 20.7 1.6 18 65-87 23-40 (51)
31 PF01352 KRAB: KRAB box; Inte 51.1 4.4 9.5E-05 21.5 -0.2 24 65-88 2-26 (41)
32 PF15076 DUF4543: Domain of un 50.8 16 0.00035 21.8 2.1 24 29-52 23-46 (75)
33 PRK10236 hypothetical protein; 45.7 13 0.00029 27.1 1.4 21 68-88 117-137 (237)
34 PF15581 Imm35: Immunity prote 44.0 25 0.00055 22.0 2.3 20 65-84 31-50 (93)
35 PF11304 DUF3106: Protein of u 43.2 60 0.0013 20.5 4.1 10 76-85 55-64 (107)
36 cd08317 Death_ank Death domain 37.8 21 0.00045 21.3 1.3 19 64-82 5-23 (84)
37 COG3313 Predicted Fe-S protein 35.1 30 0.00065 20.9 1.6 17 65-86 28-44 (74)
38 smart00271 DnaJ DnaJ molecular 34.7 76 0.0017 16.8 3.7 35 50-84 20-59 (60)
39 PHA02662 ORF131 putative membr 32.2 1.2E+02 0.0026 22.1 4.6 23 64-86 74-96 (226)
40 KOG1827 Chromatin remodeling c 29.3 1.8 3.9E-05 35.6 -5.7 43 41-84 552-594 (629)
41 PF13412 HTH_24: Winged helix- 28.4 73 0.0016 16.4 2.4 22 57-79 12-33 (48)
42 PRK14296 chaperone protein Dna 25.7 1.3E+02 0.0029 22.9 4.2 36 50-86 23-62 (372)
43 PRK05439 pantothenate kinase; 24.9 45 0.00098 25.1 1.4 31 41-71 6-36 (311)
44 PF06183 DinI: DinI-like famil 24.2 1.5E+02 0.0031 17.2 3.2 38 41-79 2-59 (65)
45 PHA03102 Small T antigen; Revi 23.9 1.5E+02 0.0032 20.1 3.7 37 49-85 25-61 (153)
46 PF09164 VitD-bind_III: Vitami 23.5 1.7E+02 0.0037 17.3 4.9 33 43-76 9-41 (68)
47 PF13945 NST1: Salt tolerance 23.4 77 0.0017 22.3 2.3 23 66-88 100-122 (190)
48 PRK14291 chaperone protein Dna 23.0 1.5E+02 0.0032 22.7 3.9 35 50-85 22-60 (382)
49 PRK10266 curved DNA-binding pr 22.8 1.7E+02 0.0036 21.6 4.1 35 50-85 23-61 (306)
50 PF12290 DUF3802: Protein of u 22.0 1.8E+02 0.0038 19.0 3.5 33 55-88 49-95 (113)
51 PRK14279 chaperone protein Dna 21.3 1.3E+02 0.0028 23.2 3.3 36 50-86 28-68 (392)
52 PF00226 DnaJ: DnaJ domain; I 20.9 82 0.0018 17.1 1.7 37 49-85 18-59 (64)
53 PTZ00463 histone H2B; Provisio 20.8 2.4E+02 0.0053 18.4 4.1 20 42-65 27-46 (117)
54 PTZ00037 DnaJ_C chaperone prot 20.3 1.9E+02 0.0041 22.6 4.1 38 49-86 46-83 (421)
No 1
>PTZ00199 high mobility group protein; Provisional
Probab=99.87 E-value=3.2e-22 Score=125.75 Aligned_cols=66 Identities=39% Similarity=0.578 Sum_probs=60.3
Q ss_pred ccccccCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhhhcccc
Q 034575 23 KAGRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 23 ~~~k~~kk~~~dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~--~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
..++++++..+||+.|+||+||||+|++++|..|..+||+ ++ +++|+++||++|+.||++||.+|+
T Consensus 8 ~~~k~~~k~~kdp~~PKrP~sAY~~F~~~~R~~i~~~~P~-~~~~~~evsk~ige~Wk~ls~eeK~~y~ 75 (94)
T PTZ00199 8 VLVRKNKRKKKDPNAPKRALSAYMFFAKEKRAEIIAENPE-LAKDVAAVGKMVGEAWNKLSEEEKAPYE 75 (94)
T ss_pred ccccccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCcC-CcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3456666778999999999999999999999999999999 65 899999999999999999999996
No 2
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=99.76 E-value=1.5e-18 Score=104.88 Aligned_cols=52 Identities=25% Similarity=0.445 Sum_probs=50.3
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 37 ~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
+|+||+||||||+++.|..+..+||+ +++.||+++||++|++|++++|++|+
T Consensus 1 ~~kRP~naf~lf~~~~r~~~~~~~p~-~~~~eisk~~g~~Wk~ls~eeK~~y~ 52 (77)
T cd01389 1 KIPRPRNAFILYRQDKHAQLKTENPG-LTNNEISRIIGRMWRSESPEVKAYYK 52 (77)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 48999999999999999999999999 99999999999999999999999985
No 3
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=99.74 E-value=4.1e-18 Score=99.07 Aligned_cols=51 Identities=47% Similarity=0.716 Sum_probs=49.8
Q ss_pred CCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 38 PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
|++|+|||++|++++|..+..+||+ +++.+|++.||++|++||++||.+|+
T Consensus 1 Pkrp~saf~~f~~~~r~~~~~~~p~-~~~~~i~~~~~~~W~~ls~~eK~~y~ 51 (66)
T cd01390 1 PKRPLSAYFLFSQEQRPKLKKENPD-ASVTEVTKILGEKWKELSEEEKKKYE 51 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 8999999999999999999999999 99999999999999999999999985
No 4
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=99.73 E-value=7.3e-18 Score=100.78 Aligned_cols=51 Identities=29% Similarity=0.514 Sum_probs=49.4
Q ss_pred CCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 38 PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
.|||+||||+|++++|..++.+||+ +++.||++.||++|+.||+++|++|+
T Consensus 2 iKrP~naf~~F~~~~r~~~~~~~p~-~~~~eisk~l~~~Wk~ls~~eK~~y~ 52 (72)
T cd01388 2 IKRPMNAFMLFSKRHRRKVLQEYPL-KENRAISKILGDRWKALSNEEKQPYY 52 (72)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5899999999999999999999999 99999999999999999999999985
No 5
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=99.71 E-value=6.1e-18 Score=119.03 Aligned_cols=63 Identities=37% Similarity=0.673 Sum_probs=59.9
Q ss_pred cccCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 26 k~~kk~~~dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
+...++.+|||.||||+|+||+|++++|+.++.++|+ +++++|++++|++|++|+++||++|.
T Consensus 59 k~~~r~k~dpN~PKRp~sayf~y~~~~R~ei~~~~p~-l~~~e~~k~~~e~WK~Ltd~eke~y~ 121 (211)
T COG5648 59 KRLVRKKKDPNGPKRPLSAYFLYSAENRDEIRKENPK-LTFGEVGKLLSEKWKELTDEEKEPYY 121 (211)
T ss_pred HHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHHhccHhhhhhHH
Confidence 4567788999999999999999999999999999999 99999999999999999999999985
No 6
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=99.70 E-value=2e-17 Score=96.95 Aligned_cols=51 Identities=33% Similarity=0.570 Sum_probs=47.7
Q ss_pred CCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 38 PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
|+||+|||++|+++++..+..+||+ ++..+|+++|+++|++|+++||.+|+
T Consensus 1 PkrP~~af~lf~~~~~~~~k~~~p~-~~~~~i~~~~~~~W~~l~~~eK~~y~ 51 (69)
T PF00505_consen 1 PKRPPNAFMLFCKEKRAKLKEENPD-LSNKEISKILAQMWKNLSEEEKAPYK 51 (69)
T ss_dssp SSSS--HHHHHHHHHHHHHHHHSTT-STHHHHHHHHHHHHHCSHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHHHHHhcc-cccccchhhHHHHHhcCCHHHHHHHH
Confidence 8999999999999999999999999 99999999999999999999999985
No 7
>smart00398 HMG high mobility group.
Probab=99.70 E-value=4.3e-17 Score=95.17 Aligned_cols=52 Identities=42% Similarity=0.643 Sum_probs=50.3
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 37 ~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
+|++|+|+|++|+++++..+..+||+ +++.+|++.||.+|+.|++++|.+|+
T Consensus 1 ~pkrp~~~y~~f~~~~r~~~~~~~~~-~~~~~i~~~~~~~W~~l~~~ek~~y~ 52 (70)
T smart00398 1 KPKRPMSAFMLFSQENRAKIKAENPD-LSNAEISKKLGERWKLLSEEEKAPYE 52 (70)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 58999999999999999999999999 99999999999999999999999985
No 8
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=99.68 E-value=9.1e-17 Score=92.81 Aligned_cols=51 Identities=43% Similarity=0.675 Sum_probs=49.6
Q ss_pred CCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 38 PKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 38 PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
|++|+|||++|+++.+..+..+||+ +++.+|++.|+.+|+.|++++|.+|.
T Consensus 1 pkrp~~af~~f~~~~~~~~~~~~~~-~~~~~i~~~~~~~W~~l~~~~k~~y~ 51 (66)
T cd00084 1 PKRPLSAYFLFSQEHRAEVKAENPG-LSVGEISKILGEMWKSLSEEEKKKYE 51 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 7899999999999999999999999 99999999999999999999999985
No 9
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=99.64 E-value=3.5e-16 Score=93.70 Aligned_cols=54 Identities=43% Similarity=0.644 Sum_probs=46.6
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 35 PNKPKRPASAFFVFMEEFREQYKKD-HPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 35 p~~PKrP~say~lf~~~~r~~~~~~-~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
|+.||+|+|||+||+.+++..+..+ ++. .++.|+++.|++.|++||++||.+|+
T Consensus 1 p~kpK~~~say~lF~~~~~~~~k~~G~~~-~~~~e~~k~~~~~Wk~Ls~~EK~~Y~ 55 (73)
T PF09011_consen 1 PKKPKRPPSAYNLFMKEMRKEVKEEGGQK-QSFREVMKEISERWKSLSEEEKEPYE 55 (73)
T ss_dssp SSS--SSSSHHHHHHHHHHHHHHHHT-T--SSHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHhcccC-CCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6789999999999999999999988 666 89999999999999999999999996
No 10
>KOG0381 consensus HMG box-containing protein [General function prediction only]
Probab=99.59 E-value=4.3e-15 Score=92.43 Aligned_cols=55 Identities=45% Similarity=0.699 Sum_probs=52.5
Q ss_pred CC--CCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 34 DP--NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 34 dp--~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
|| +.|++|++||++|+.+.+..+..+||+ +++.+|++++|++|++|+++++.+|+
T Consensus 17 ~p~~~~pkrp~sa~~~f~~~~~~~~k~~~p~-~~~~~v~k~~g~~W~~l~~~~k~~y~ 73 (96)
T KOG0381|consen 17 DPNAQAPKRPLSAFFLFSSEQRSKIKAENPG-LSVGEVAKALGEMWKNLAEEEKQPYE 73 (96)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 66 499999999999999999999999999 99999999999999999999999884
No 11
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=99.59 E-value=1.4e-15 Score=113.66 Aligned_cols=58 Identities=28% Similarity=0.476 Sum_probs=54.2
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 31 ~~~dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
......+.||||||||+|+++.|.++..+||. +++.||++.||.+|+.|+++||.+|+
T Consensus 56 ~k~~~~hIKRPMNAFMVWSq~~RRkma~qnP~-mHNSEISK~LG~~WK~Lse~EKrPFi 113 (331)
T KOG0527|consen 56 DKTSTDRIKRPMNAFMVWSQGQRRKLAKQNPK-MHNSEISKRLGAEWKLLSEEEKRPFV 113 (331)
T ss_pred CCCCccccCCCcchhhhhhHHHHHHHHHhCcc-hhhHHHHHHHHHHHhhcCHhhhccHH
Confidence 34455689999999999999999999999999 99999999999999999999999997
No 12
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=99.37 E-value=5.4e-13 Score=104.36 Aligned_cols=60 Identities=45% Similarity=0.679 Sum_probs=54.3
Q ss_pred ccccCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 25 ~k~~kk~~~dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
++++.++.+|||+|||++||||+|++..|..++.+ + .+++||++.+|++|+.|++ |.+|+
T Consensus 523 ~~k~~kk~kdpnapkra~sa~m~w~~~~r~~ik~d--g-i~~~dv~kk~g~~wk~ms~--k~~we 582 (615)
T KOG0526|consen 523 KKKKGKKKKDPNAPKRATSAYMLWLNASRESIKED--G-ISVGDVAKKAGEKWKQMSA--KEEWE 582 (615)
T ss_pred cccCcccCCCCCCCccchhHHHHHHHhhhhhHhhc--C-chHHHHHHHHhHHHhhhcc--cchhh
Confidence 34677888999999999999999999999999987 6 8999999999999999998 66665
No 13
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=99.06 E-value=1.2e-10 Score=87.51 Aligned_cols=51 Identities=25% Similarity=0.496 Sum_probs=48.3
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhccc
Q 034575 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLV 88 (90)
Q Consensus 37 ~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Y 88 (90)
..|+|+||||+|+.|.|..|.+++.- ....+|.++||++|++||.||..+|
T Consensus 191 hiKKPLNAFmlyMKEmRa~vvaEctl-KeSAaiNqiLGrRWH~LSrEEQAKY 241 (421)
T KOG3248|consen 191 HIKKPLNAFMLYMKEMRAKVVAECTL-KESAAINQILGRRWHALSREEQAKY 241 (421)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHhHHHhhhhHHHHHHH
Confidence 68999999999999999999999987 7899999999999999999998877
No 14
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=99.00 E-value=2.9e-10 Score=84.86 Aligned_cols=58 Identities=21% Similarity=0.443 Sum_probs=53.8
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 31 ~~~dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
..+.|.+|.+|+.+||.|+..+|++|++.||+ +...||.++||.+|..|+++||+.|+
T Consensus 58 ~pkpPkppekpl~pymrySrkvWd~VkA~nPe-~kLWeiGK~Ig~mW~dLpd~EK~ey~ 115 (410)
T KOG4715|consen 58 RPKPPKPPEKPLMPYMRYSRKVWDQVKASNPE-LKLWEIGKIIGGMWLDLPDEEKQEYL 115 (410)
T ss_pred CCCCCCCCCcccchhhHHhhhhhhhhhccCcc-hHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 34467788999999999999999999999999 99999999999999999999999885
No 15
>KOG0528 consensus HMG-box transcription factor SOX5 [Transcription]
Probab=98.98 E-value=1.5e-10 Score=89.74 Aligned_cols=59 Identities=25% Similarity=0.403 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhccc
Q 034575 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLV 88 (90)
Q Consensus 29 kk~~~dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Y 88 (90)
+.....+++.||||||||+|..|.|-.+-..+|+ +....|+++||.+|+.|+..||++|
T Consensus 317 rg~~ss~PHIKRPMNAFMVWAkDERRKILqA~PD-MHNSnISKILGSRWKaMSN~eKQPY 375 (511)
T KOG0528|consen 317 RGRASSEPHIKRPMNAFMVWAKDERRKILQAFPD-MHNSNISKILGSRWKAMSNTEKQPY 375 (511)
T ss_pred cCcCCCCccccCCcchhhcccchhhhhhhhcCcc-ccccchhHHhcccccccccccccch
Confidence 4455566789999999999999999999999999 9999999999999999999999998
No 16
>KOG2746 consensus HMG-box transcription factor Capicua and related proteins [Transcription]
Probab=98.32 E-value=2e-07 Score=74.81 Aligned_cols=59 Identities=22% Similarity=0.436 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHH--HHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 30 KAAKDPNKPKRPASAFFVFMEEFR--EQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 30 k~~~dp~~PKrP~say~lf~~~~r--~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
.-.+|..+..+|||+|++|++.++ ..+...||+ ..+..|+++||+.|-.|-+.||+.|-
T Consensus 174 pnkr~k~HirrPMnaf~ifskrhr~~g~vhq~~pn-~DNrtIskiLgewWytL~~~Ekq~yh 234 (683)
T KOG2746|consen 174 PNKRDKDHIRRPMNAFHIFSKRHRGEGRVHQRHPN-QDNRTISKILGEWWYTLGPNEKQKYH 234 (683)
T ss_pred CCcCcchhhhhhhHHHHHHHhhcCCccchhccCcc-ccchhHHHHHhhhHhhhCchhhhhHH
Confidence 344556688999999999999999 899999999 99999999999999999999999984
No 17
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=97.54 E-value=0.00013 Score=50.81 Aligned_cols=43 Identities=26% Similarity=0.376 Sum_probs=38.0
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 42 ASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 42 ~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
-++|+-|+.+++. .|.+ ++..|+....+..|..|+++||..|+
T Consensus 83 nnaYLNFLReFRr----kh~~-L~p~dlI~~AAraW~rLSe~eK~rYr 125 (183)
T PF06382_consen 83 NNAYLNFLREFRR----KHCG-LSPQDLIQRAARAWCRLSEAEKNRYR 125 (183)
T ss_pred chHHHHHHHHHHH----HccC-CCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4679999999876 4566 89999999999999999999999985
No 18
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=97.36 E-value=0.00061 Score=47.16 Aligned_cols=48 Identities=29% Similarity=0.441 Sum_probs=42.1
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 034575 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMS 81 (90)
Q Consensus 33 ~dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls 81 (90)
+.|.+-.|-+|||-.|+.+....++++||+ +++.|.-...+..|...+
T Consensus 117 kPPEKRqR~psaYn~f~k~ei~rik~~~p~-ishkeaFs~aAknW~h~p 164 (170)
T PF04690_consen 117 KPPEKRQRVPSAYNRFMKEEIQRIKAENPD-ISHKEAFSAAAKNWAHFP 164 (170)
T ss_pred CCccccCCCchhHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHhhhhCc
Confidence 334455677899999999999999999999 999999999999998765
No 19
>PF08073 CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 The CHD N-terminal domain is found in PHD/RING fingers and chromo domain-associated helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.97 E-value=0.0012 Score=37.84 Aligned_cols=40 Identities=20% Similarity=0.377 Sum_probs=35.9
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 034575 42 ASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSE 82 (90)
Q Consensus 42 ~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~ 82 (90)
++.|=+|.+..|+.+...||+ +..+.+..+++.+|++-++
T Consensus 13 lt~yK~Fsq~vRP~l~~~NPk-~~~sKl~~l~~AKwrEF~~ 52 (55)
T PF08073_consen 13 LTNYKAFSQHVRPLLAKANPK-APMSKLMMLLQAKWREFQE 52 (55)
T ss_pred HHHHHHHHHHHHHHHHHHCCC-CcHHHHHHHHHHHHHHHHh
Confidence 356889999999999999999 9999999999999987544
No 20
>PF14887 HMG_box_5: HMG (high mobility group) box 5; PDB: 1L8Y_A 1L8Z_A 2HDZ_A.
Probab=96.59 E-value=0.0045 Score=37.98 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=40.0
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 37 KPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 37 ~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
.|..|.+|--+|.+.....+-+.+++ -...+ .+.+...|.+|++.+|.+|+
T Consensus 3 lPE~PKt~qe~Wqq~vi~dYla~~~~-dr~K~-~kam~~~W~~me~Kekl~WI 53 (85)
T PF14887_consen 3 LPETPKTAQEIWQQSVIGDYLAKFRN-DRKKA-LKAMEAQWSQMEKKEKLKWI 53 (85)
T ss_dssp -S----THHHHHHHHHHHHHHHHTTS-THHHH-HHHHHHHHHTTGGGHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhH-hHHHH-HHHHHHHHHHhhhhhhhHHH
Confidence 57888999999999999999999998 45555 45899999999999998875
No 21
>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT). MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus
Probab=95.68 E-value=0.039 Score=39.12 Aligned_cols=45 Identities=20% Similarity=0.383 Sum_probs=35.2
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 034575 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSM 80 (90)
Q Consensus 31 ~~~dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~l 80 (90)
.......++||+|+||.|+.-+- ...|+ ....+++..|+..|..=
T Consensus 37 ~~~~~~~~kr~lN~Fm~FRsyy~----~~~~~-~~Qk~~S~~l~~lW~~d 81 (201)
T PF04769_consen 37 RKRSPEKAKRPLNGFMAFRSYYS----PIFPP-LPQKELSGILTKLWEKD 81 (201)
T ss_pred ccccccccccchhHHHHHHHHHH----hhcCC-cCHHHHHHHHHHHHhCC
Confidence 33445578999999999965554 56677 78899999999999763
No 22
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=94.84 E-value=0.053 Score=35.72 Aligned_cols=46 Identities=20% Similarity=0.345 Sum_probs=40.1
Q ss_pred CCC-CCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 034575 37 KPK-RPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83 (90)
Q Consensus 37 ~PK-rP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~ 83 (90)
+|- |-.-||.-|....-+.++.+||+ +-.+++-.+|-..|..-|++
T Consensus 71 HPErR~KAAy~afeE~~Lp~lK~E~Pg-LrlsQ~kq~l~K~w~KSPeN 117 (122)
T PF06244_consen 71 HPERRMKAAYKAFEERRLPELKEENPG-LRLSQYKQMLWKEWQKSPEN 117 (122)
T ss_pred CcchhHHHHHHHHHHHHhHHHHhhCCC-chHHHHHHHHHHHHhcCCCC
Confidence 454 44578999999999999999999 99999999999999887764
No 23
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=94.34 E-value=0.016 Score=41.38 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=47.5
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 36 ~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
.++..|.-+|+-+-..++..+...+|+ .+..+++++++..|.+|+++-+.+|+
T Consensus 142 ~~~~~~~~~~~e~~~~~r~~~~~~~~~-~~~~e~~k~~~~~w~el~~skK~~~~ 194 (211)
T COG5648 142 LPNKAPIGPFIENEPKIRPKVEGPSPD-KALVEETKIISKAWSELDESKKKKYI 194 (211)
T ss_pred cCCCCCCchhhhccHHhccccCCCCcc-hhhhHHhhhhhhhhhhhChhhhhHHH
Confidence 357788888999999999999999998 88999999999999999999988875
No 24
>KOG3223 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.92 E-value=1.6 Score=31.18 Aligned_cols=47 Identities=23% Similarity=0.386 Sum_probs=40.1
Q ss_pred CCC-CCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 034575 36 NKP-KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEA 83 (90)
Q Consensus 36 ~~P-KrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~ 83 (90)
.+| +|-.-+|.-|-....+.++.+||+ +..+++-.+|-.+|..-|+.
T Consensus 162 rHPEkRmrAA~~afEe~~LPrLK~e~P~-lrlsQ~Kqll~Kew~KsPDN 209 (221)
T KOG3223|consen 162 RHPEKRMRAAFKAFEEARLPRLKKENPG-LRLSQYKQLLKKEWQKSPDN 209 (221)
T ss_pred cChHHHHHHHHHHHHHhhchhhhhcCCC-ccHHHHHHHHHHHHhhCCCC
Confidence 455 455667999999999999999999 99999999999999887754
No 25
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=76.60 E-value=1.8 Score=30.54 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=23.5
Q ss_pred CCCCCHHHHHH-HHHHHHhcCChhhhcccc
Q 034575 61 PKNKSVAAVGK-AGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 61 P~~~~~~eisk-~l~~~W~~ls~~eK~~Ye 89 (90)
|. .++..+++ .||.-|+.+++++|..|+
T Consensus 66 p~-~Df~~~s~~vLG~~wr~as~eQr~~F~ 94 (211)
T PRK15117 66 PY-VQVKYAGALVLGRYYKDATPAQREAYF 94 (211)
T ss_pred cc-CCHHHHHHHHhhhhhhhCCHHHHHHHH
Confidence 55 67888877 589999999999998875
No 26
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=76.58 E-value=1.8 Score=30.23 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=22.7
Q ss_pred CCHHHHHH-HHHHHHhcCChhhhcccc
Q 034575 64 KSVAAVGK-AGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 64 ~~~~eisk-~l~~~W~~ls~~eK~~Ye 89 (90)
.++..+++ .||.-|+.+|+++|+.|+
T Consensus 64 ~Df~~mar~vLG~~W~~~s~~Qr~~F~ 90 (198)
T TIGR03481 64 FDLPAMARLTLGSSWTSLSPEQRRRFI 90 (198)
T ss_pred CCHHHHHHHHhhhhhhhCCHHHHHHHH
Confidence 67888887 589999999999998875
No 27
>PF13875 DUF4202: Domain of unknown function (DUF4202)
Probab=75.15 E-value=8 Score=27.23 Aligned_cols=39 Identities=26% Similarity=0.424 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhc
Q 034575 44 AFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSG 86 (90)
Q Consensus 44 ay~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~ 86 (90)
+.++|+..+.+.+...|. ...+..+|...|+.||+.-++
T Consensus 131 acLVFL~~~f~~F~~~~d----eeK~v~Il~KTw~KMS~~g~~ 169 (185)
T PF13875_consen 131 ACLVFLEYYFEDFAAKHD----EEKIVDILRKTWRKMSERGHE 169 (185)
T ss_pred HHHHhHHHHHHHHHhcCC----HHHHHHHHHHHHHHCCHHHHH
Confidence 478899999999987773 356888999999999998653
No 28
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=70.25 E-value=1.4 Score=29.58 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHH-HHHHHhcCChhhhcccc
Q 034575 61 PKNKSVAAVGKA-GGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 61 P~~~~~~eisk~-l~~~W~~ls~~eK~~Ye 89 (90)
|. ..+..+++. ||.-|+.|+++|++.|+
T Consensus 36 ~~-~D~~~~ar~~LG~~w~~~s~~q~~~F~ 64 (170)
T PF05494_consen 36 PY-FDFERMARRVLGRYWRKASPAQRQRFV 64 (170)
T ss_dssp GG-B-HHHHHHHHHGGGTTTS-HHHHHHHH
T ss_pred Hh-CCHHHHHHHHHHHhHhhCCHHHHHHHH
Confidence 55 678888776 78899999999998774
No 29
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=53.28 E-value=5 Score=24.61 Aligned_cols=13 Identities=15% Similarity=0.112 Sum_probs=11.8
Q ss_pred HhcCChhhhcccc
Q 034575 77 WKSMSEAVSGLVL 89 (90)
Q Consensus 77 W~~ls~~eK~~Ye 89 (90)
|++||+|||+.|.
T Consensus 26 yntms~eEk~~~D 38 (97)
T PF12650_consen 26 YNTMSKEEKEKYD 38 (97)
T ss_pred cccCCHHHHHHhh
Confidence 8999999999885
No 30
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=52.96 E-value=11 Score=20.71 Aligned_cols=18 Identities=28% Similarity=0.553 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHHHhcCChhhhcc
Q 034575 65 SVAAVGKAGGEKWKSMSEAVSGL 87 (90)
Q Consensus 65 ~~~eisk~l~~~W~~ls~~eK~~ 87 (90)
+..||.. |..|++++|..
T Consensus 23 T~dEI~~-----W~~~s~~er~~ 40 (51)
T PF06945_consen 23 TLDEIRD-----WKSMSDDERRA 40 (51)
T ss_pred cHHHHHH-----HhhCCHHHHHH
Confidence 6778875 99999999853
No 31
>PF01352 KRAB: KRAB box; InterPro: IPR001909 The Krueppel-associated box (KRAB) is a domain of around 75 amino acids that is found in the N-terminal part of about one third of eukaryotic Krueppel-type C2H2 zinc finger proteins (ZFPs) []. It is enriched in charged amino acids and can be divided into subregions A and B, which are predicted to fold into two amphipathic alpha-helices. The KRAB A and B boxes can be separated by variable spacer segments and many KRAB proteins contain only the A box []. The functions currently known for members of the KRAB-containing protein family include transcriptional repression of RNA polymerase I, II, and III promoters, binding and splicing of RNA, and control of nucleolus function. The KRAB domain functions as a transcriptional repressor when tethered to the template DNA by a DNA-binding domain. A sequence of 45 amino acids in the KRAB A subdomain has been shown to be necessary and sufficient for transcriptional repression. The B box does not repress by itself but does potentiate the repression exerted by the KRAB A subdomain [, ]. Gene silencing requires the binding of the KRAB domain to the RING-B box-coiled coil (RBCC) domain of the KAP-1/TIF1-beta corepressor. As KAP-1 binds to the heterochromatin proteins HP1, it has been proposed that the KRAB-ZFP-bound target gene could be silenced following recruitment to heterochromatin [, ]. KRAB-ZFPs probably constitute the single largest class of transcription factors within the human genome []. Although the function of KRAB-ZFPs is largely unknown, they appear to play important roles during cell differentiation and development. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1V65_A.
Probab=51.06 E-value=4.4 Score=21.51 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=12.0
Q ss_pred CHHHHHHHHH-HHHhcCChhhhccc
Q 034575 65 SVAAVGKAGG-EKWKSMSEAVSGLV 88 (90)
Q Consensus 65 ~~~eisk~l~-~~W~~ls~~eK~~Y 88 (90)
+|.||+--++ +.|..|.+.+|.-|
T Consensus 2 tf~Dvav~fs~eEW~~L~~~Qk~ly 26 (41)
T PF01352_consen 2 TFEDVAVYFSQEEWELLDPAQKNLY 26 (41)
T ss_dssp -----TT---HHHHHTS-HHHHHHH
T ss_pred eEEEEEEEcChhhcccccceecccc
Confidence 3445555555 56999999998766
No 32
>PF15076 DUF4543: Domain of unknown function (DUF4543)
Probab=50.81 E-value=16 Score=21.75 Aligned_cols=24 Identities=13% Similarity=0.517 Sum_probs=18.7
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHH
Q 034575 29 GKAAKDPNKPKRPASAFFVFMEEF 52 (90)
Q Consensus 29 kk~~~dp~~PKrP~say~lf~~~~ 52 (90)
.-+...|+.|.-||.-||++++.-
T Consensus 23 ~dr~~K~GfpdepmrE~ml~l~~L 46 (75)
T PF15076_consen 23 QDRPRKPGFPDEPMREYMLHLQAL 46 (75)
T ss_pred hcCCCCCCCCcchHHHHHHHHHHH
Confidence 344556889999999999998644
No 33
>PRK10236 hypothetical protein; Provisional
Probab=45.69 E-value=13 Score=27.12 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCChhhhccc
Q 034575 68 AVGKAGGEKWKSMSEAVSGLV 88 (90)
Q Consensus 68 eisk~l~~~W~~ls~~eK~~Y 88 (90)
-+.+.+...|..||++|++.+
T Consensus 117 il~kll~~a~~kms~eE~~~L 137 (237)
T PRK10236 117 LLEQFLRNTWKKMDEEHKQEF 137 (237)
T ss_pred HHHHHHHHHHHHCCHHHHHHH
Confidence 367889999999999999754
No 34
>PF15581 Imm35: Immunity protein 35
Probab=44.00 E-value=25 Score=22.00 Aligned_cols=20 Identities=10% Similarity=0.376 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHhcCChhh
Q 034575 65 SVAAVGKAGGEKWKSMSEAV 84 (90)
Q Consensus 65 ~~~eisk~l~~~W~~ls~~e 84 (90)
+..-+...+.+.|+.|+++|
T Consensus 31 ~i~~l~~lIe~eWRGl~~~q 50 (93)
T PF15581_consen 31 TIRNLESLIEHEWRGLPEEQ 50 (93)
T ss_pred HHHHHHHHHHHHHcCCCHHH
Confidence 45567888999999999886
No 35
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=43.24 E-value=60 Score=20.49 Aligned_cols=10 Identities=20% Similarity=0.680 Sum_probs=5.9
Q ss_pred HHhcCChhhh
Q 034575 76 KWKSMSEAVS 85 (90)
Q Consensus 76 ~W~~ls~~eK 85 (90)
.|..||+++|
T Consensus 55 ~W~~LspeqR 64 (107)
T PF11304_consen 55 RWAALSPEQR 64 (107)
T ss_pred HHHhCCHHHH
Confidence 5666666555
No 36
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=37.84 E-value=21 Score=21.29 Aligned_cols=19 Identities=16% Similarity=0.452 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHHHhcCCh
Q 034575 64 KSVAAVGKAGGEKWKSMSE 82 (90)
Q Consensus 64 ~~~~eisk~l~~~W~~ls~ 82 (90)
..+..|+..||..|..|..
T Consensus 5 ~~l~~ia~~lG~dW~~LAr 23 (84)
T cd08317 5 IRLADISNLLGSDWPQLAR 23 (84)
T ss_pred chHHHHHHHHhhHHHHHHH
Confidence 6788999999999977643
No 37
>COG3313 Predicted Fe-S protein [General function prediction only]
Probab=35.05 E-value=30 Score=20.88 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHhcCChhhhc
Q 034575 65 SVAAVGKAGGEKWKSMSEAVSG 86 (90)
Q Consensus 65 ~~~eisk~l~~~W~~ls~~eK~ 86 (90)
+..||.. |..|+++||.
T Consensus 28 t~~Ei~~-----W~~msd~Er~ 44 (74)
T COG3313 28 TRDEIFN-----WSSMSDDERR 44 (74)
T ss_pred cHHHHHH-----HhhCCHHHHH
Confidence 5667775 9999999885
No 38
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=34.65 E-value=76 Score=16.85 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=24.3
Q ss_pred HHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCChhh
Q 034575 50 EEFREQYKKDHPKNKS-----VAAVGKAGGEKWKSMSEAV 84 (90)
Q Consensus 50 ~~~r~~~~~~~P~~~~-----~~eisk~l~~~W~~ls~~e 84 (90)
..++..+..-||+... ..+....|.+.|..|.+..
T Consensus 20 ~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 20 KAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred HHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 4555666777888333 4467788889998887654
No 39
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=32.24 E-value=1.2e+02 Score=22.07 Aligned_cols=23 Identities=17% Similarity=0.068 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHhcCChhhhc
Q 034575 64 KSVAAVGKAGGEKWKSMSEAVSG 86 (90)
Q Consensus 64 ~~~~eisk~l~~~W~~ls~~eK~ 86 (90)
+++.-+.+.+.+-...|+++||.
T Consensus 74 ~sf~lll~Al~Et~~~Lp~~qK~ 96 (226)
T PHA02662 74 DALALASAALAETLAELPRADRL 96 (226)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHH
Confidence 56888999999999999999986
No 40
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=29.29 E-value=1.8 Score=35.60 Aligned_cols=43 Identities=14% Similarity=0.224 Sum_probs=38.8
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhh
Q 034575 41 PASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAV 84 (90)
Q Consensus 41 P~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~e 84 (90)
=.++|++|+.+.+..+..++|+ ..+++++...|..|..|+..-
T Consensus 552 ~~~~~~~~s~~~~~~~~~~np~-v~~~~~~~~vg~~~~~lp~~~ 594 (629)
T KOG1827|consen 552 SPEPYILDSIENRTIIWFENPT-VGFGEVSIIVGNDWDKLPNIN 594 (629)
T ss_pred CCccccccccccCceeeeeCCC-cccceeEEeecCCcccCcccc
Confidence 3578999999999999999999 999999999999999998443
No 41
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=28.36 E-value=73 Score=16.41 Aligned_cols=22 Identities=9% Similarity=0.229 Sum_probs=15.3
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc
Q 034575 57 KKDHPKNKSVAAVGKAGGEKWKS 79 (90)
Q Consensus 57 ~~~~P~~~~~~eisk~l~~~W~~ 79 (90)
-.++|. ++..|+++.++-.+..
T Consensus 12 l~~~~~-~t~~ela~~~~is~~t 33 (48)
T PF13412_consen 12 LRENPR-ITQKELAEKLGISRST 33 (48)
T ss_dssp HHHCTT-S-HHHHHHHHTS-HHH
T ss_pred HHHcCC-CCHHHHHHHhCCCHHH
Confidence 456898 9999999988755543
No 42
>PRK14296 chaperone protein DnaJ; Provisional
Probab=25.75 E-value=1.3e+02 Score=22.89 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=25.5
Q ss_pred HHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhhhc
Q 034575 50 EEFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEAVSG 86 (90)
Q Consensus 50 ~~~r~~~~~~~P~~~~----~~eisk~l~~~W~~ls~~eK~ 86 (90)
..+|.....-||+ .+ ..+--+.|.+.|..|++++|.
T Consensus 23 ~ayrkla~~~HPD-~n~~~~a~~~F~~i~~AyevLsD~~KR 62 (372)
T PRK14296 23 QAYRKLAKQYHPD-LNKSPDAHDKMVEINEAADVLLDKDKR 62 (372)
T ss_pred HHHHHHHHHHCcC-CCCCchHHHHHHHHHHHHHHhcCHHHh
Confidence 3455555667777 43 446677899999999987754
No 43
>PRK05439 pantothenate kinase; Provisional
Probab=24.90 E-value=45 Score=25.05 Aligned_cols=31 Identities=13% Similarity=0.224 Sum_probs=25.3
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 034575 41 PASAFFVFMEEFREQYKKDHPKNKSVAAVGK 71 (90)
Q Consensus 41 P~say~lf~~~~r~~~~~~~P~~~~~~eisk 71 (90)
.+++|..|..+.|..+....|..++..|+..
T Consensus 6 ~~~~~~~~~r~~w~~l~~~~~~~l~~~~~~~ 36 (311)
T PRK05439 6 EFSPYLEFSREQWAALRDSTPLTLTEEELER 36 (311)
T ss_pred CCCCceeECHHHHHHHHhcCCCCCCHHHHHH
Confidence 4689999999999999988887667766655
No 44
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=24.21 E-value=1.5e+02 Score=17.16 Aligned_cols=38 Identities=18% Similarity=0.373 Sum_probs=26.8
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCCC--------------------HHHHHHHHHHHHhc
Q 034575 41 PASAFFVFMEEFREQYKKDHPKNKS--------------------VAAVGKAGGEKWKS 79 (90)
Q Consensus 41 P~say~lf~~~~r~~~~~~~P~~~~--------------------~~eisk~l~~~W~~ 79 (90)
|..++-.+..+.-..+...+|+. . -..|..+|.++|..
T Consensus 2 p~ga~~AL~~EL~kRl~~~yPd~-~v~Vr~~s~~~l~v~g~~~~~k~~i~~iLqe~we~ 59 (65)
T PF06183_consen 2 PAGALEALESELTKRLHRQYPDA-EVRVRPGSANGLSVSGGKKDDKERIEEILQEMWED 59 (65)
T ss_dssp -TTHHHHHHHHHHHHHHHH-SS--EEEEEEESS-EEEEES--HHHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHHHCCCc-eEeeeecccCccccCCcCchHHHHHHHHHHHHHhc
Confidence 56778888888888888888873 2 23588888899965
No 45
>PHA03102 Small T antigen; Reviewed
Probab=23.92 E-value=1.5e+02 Score=20.12 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhh
Q 034575 49 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVS 85 (90)
Q Consensus 49 ~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK 85 (90)
...+|..+..-||+--...+..+.|.+.|..|+++.+
T Consensus 25 KkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~ 61 (153)
T PHA03102 25 RKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVK 61 (153)
T ss_pred HHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHH
Confidence 3556777778899832456788999999999987664
No 46
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=23.52 E-value=1.7e+02 Score=17.31 Aligned_cols=33 Identities=9% Similarity=0.260 Sum_probs=24.0
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 034575 43 SAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEK 76 (90)
Q Consensus 43 say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~ 76 (90)
+.|.-|-....+.++...|+ ++..++...+.++
T Consensus 9 ~tFtEyKKrL~e~l~~k~P~-at~~~l~~lve~R 41 (68)
T PF09164_consen 9 NTFTEYKKRLAERLRAKLPD-ATPTELKELVEKR 41 (68)
T ss_dssp S-HHHHHHHHHHHHHHH-TT-S-HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHH
Confidence 45777888888899999999 8988888776543
No 47
>PF13945 NST1: Salt tolerance down-regulator
Probab=23.45 E-value=77 Score=22.35 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhcCChhhhccc
Q 034575 66 VAAVGKAGGEKWKSMSEAVSGLV 88 (90)
Q Consensus 66 ~~eisk~l~~~W~~ls~~eK~~Y 88 (90)
..+....|-+.|-.|+++||...
T Consensus 100 s~eEre~LkeFW~SL~eeERr~L 122 (190)
T PF13945_consen 100 SQEEREKLKEFWESLSEEERRSL 122 (190)
T ss_pred hHHHHHHHHHHHHccCHHHHHHH
Confidence 44566789999999999999753
No 48
>PRK14291 chaperone protein DnaJ; Provisional
Probab=23.01 E-value=1.5e+02 Score=22.68 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=25.6
Q ss_pred HHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhhh
Q 034575 50 EEFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEAVS 85 (90)
Q Consensus 50 ~~~r~~~~~~~P~~~~----~~eisk~l~~~W~~ls~~eK 85 (90)
+.+|.....-||+ .+ ..+.-+.|.+.|..|++.++
T Consensus 22 ~ayr~la~~~HPD-~~~~~~~~~~f~~i~~Ay~vLsd~~k 60 (382)
T PRK14291 22 KAYRRLARKYHPD-FNKNPEAEEKFKEINEAYQVLSDPEK 60 (382)
T ss_pred HHHHHHHHHHCCC-CCCCccHHHHHHHHHHHHHHhcCHHH
Confidence 4556666677887 53 45677889999999998764
No 49
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=22.76 E-value=1.7e+02 Score=21.61 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhhh
Q 034575 50 EEFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEAVS 85 (90)
Q Consensus 50 ~~~r~~~~~~~P~~~~----~~eisk~l~~~W~~ls~~eK 85 (90)
..+|.....-||+ .+ ..+..+.+.+.|..|++.++
T Consensus 23 ~ayr~la~k~HPD-~~~~~~~~~~f~~i~~Ay~~L~~~~k 61 (306)
T PRK10266 23 TAYRRLARKYHPD-VSKEPDAEARFKEVAEAWEVLSDEQR 61 (306)
T ss_pred HHHHHHHHHHCcC-CCCCccHHHHHHHHHHHHHHhhhHHH
Confidence 4455666677887 43 56777889999999986654
No 50
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=21.97 E-value=1.8e+02 Score=18.99 Aligned_cols=33 Identities=6% Similarity=0.114 Sum_probs=23.8
Q ss_pred HHHHhCCCCCCHH--------------HHHHHHHHHHhcCChhhhccc
Q 034575 55 QYKKDHPKNKSVA--------------AVGKAGGEKWKSMSEAVSGLV 88 (90)
Q Consensus 55 ~~~~~~P~~~~~~--------------eisk~l~~~W~~ls~~eK~~Y 88 (90)
.+..+||+ +++. |+...|+.-|...+-.+..-|
T Consensus 49 ~vc~Qnp~-L~~~~R~~iirE~Daiv~DLeEVLa~V~~~~aT~eQ~~F 95 (113)
T PF12290_consen 49 AVCEQNPE-LEFSQRFQIIREADAIVYDLEEVLASVWNQKATNEQIAF 95 (113)
T ss_pred HHHccCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 45678888 7643 677788999988777666544
No 51
>PRK14279 chaperone protein DnaJ; Provisional
Probab=21.31 E-value=1.3e+02 Score=23.17 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=26.6
Q ss_pred HHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCChhhhc
Q 034575 50 EEFREQYKKDHPKNKS-----VAAVGKAGGEKWKSMSEAVSG 86 (90)
Q Consensus 50 ~~~r~~~~~~~P~~~~-----~~eisk~l~~~W~~ls~~eK~ 86 (90)
..+|.....-||+ .+ ..+..+.|.+.|..|++++|.
T Consensus 28 ~ayr~la~~~HPD-~~~~~~~a~~~f~~i~~Ay~vLsD~~KR 68 (392)
T PRK14279 28 KAYRKLARELHPD-ANPGDPAAEERFKAVSEAHDVLSDPAKR 68 (392)
T ss_pred HHHHHHHHHHCcC-CCCCChHHHHHHHHHHHHHHHhcchhhh
Confidence 4556666777887 53 346778899999999988754
No 52
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=20.90 E-value=82 Score=17.09 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhCCCCC-CH----HHHHHHHHHHHhcCChhhh
Q 034575 49 MEEFREQYKKDHPKNK-SV----AAVGKAGGEKWKSMSEAVS 85 (90)
Q Consensus 49 ~~~~r~~~~~~~P~~~-~~----~eisk~l~~~W~~ls~~eK 85 (90)
...++..+..-||+.. .. .+....|.+.|..|++.++
T Consensus 18 k~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~ 59 (64)
T PF00226_consen 18 KKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPER 59 (64)
T ss_dssp HHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHH
Confidence 3455666777888832 22 3688889999999876554
No 53
>PTZ00463 histone H2B; Provisional
Probab=20.77 E-value=2.4e+02 Score=18.43 Aligned_cols=20 Identities=15% Similarity=0.376 Sum_probs=12.4
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCC
Q 034575 42 ASAFFVFMEEFREQYKKDHPKNKS 65 (90)
Q Consensus 42 ~say~lf~~~~r~~~~~~~P~~~~ 65 (90)
...|-+|.-.. +++-||+ ..
T Consensus 27 ~esy~~YI~KV---LKqVhPd-~g 46 (117)
T PTZ00463 27 YDSYGLYIFKV---LKQVHPD-TG 46 (117)
T ss_pred cchHHHHHHHH---HHhhCCC-CC
Confidence 45688886444 4555777 43
No 54
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=20.32 E-value=1.9e+02 Score=22.63 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhc
Q 034575 49 MEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSG 86 (90)
Q Consensus 49 ~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~ 86 (90)
-..+|.....-||+.....+..+.|.+.|..|++.++.
T Consensus 46 KkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR 83 (421)
T PTZ00037 46 KKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKR 83 (421)
T ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHH
Confidence 46667777888999323457888999999999977743
Done!