Query 034575
Match_columns 90
No_of_seqs 114 out of 1031
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 06:32:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034575.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034575hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wgf_A Upstream binding factor 99.9 2.6E-23 9E-28 128.4 7.1 64 25-89 8-71 (90)
2 2co9_A Thymus high mobility gr 99.9 1.2E-22 4.1E-27 128.0 7.4 64 25-89 5-68 (102)
3 2eqz_A High mobility group pro 99.9 4.4E-22 1.5E-26 121.7 7.4 62 27-89 5-68 (86)
4 2e6o_A HMG box-containing prot 99.9 4.1E-22 1.4E-26 122.2 6.9 59 30-89 10-68 (87)
5 1k99_A Upstream binding factor 99.9 2E-22 6.9E-27 126.5 4.9 60 29-89 2-61 (99)
6 2d7l_A WD repeat and HMG-box D 99.9 8E-22 2.8E-26 120.2 6.4 55 34-89 2-57 (81)
7 1hme_A High mobility group pro 99.9 9.5E-22 3.3E-26 117.6 5.9 57 32-89 1-57 (77)
8 2lhj_A High mobility group pro 99.8 2.4E-22 8.3E-27 125.4 3.1 63 26-89 11-75 (97)
9 1cg7_A Protein (NON histone pr 99.8 1.7E-22 5.7E-27 125.4 2.2 62 27-89 10-71 (93)
10 2crj_A SWI/SNF-related matrix- 99.8 2.7E-21 9.4E-26 119.6 6.4 57 32-89 2-58 (92)
11 1hry_A Human SRY; DNA, DNA-bin 99.8 1.9E-21 6.6E-26 116.0 5.1 55 34-89 1-55 (76)
12 2cs1_A PMS1 protein homolog 1; 99.8 9.5E-21 3.2E-25 117.1 6.6 57 32-89 2-58 (92)
13 1j46_A SRY, sex-determining re 99.8 1.9E-20 6.4E-25 114.2 6.5 55 34-89 1-55 (85)
14 1wz6_A HMG-box transcription f 99.8 1.3E-20 4.4E-25 114.1 5.7 56 33-89 3-58 (82)
15 1aab_A High mobility group pro 99.8 3.1E-21 1.1E-25 117.1 2.7 57 32-89 2-60 (83)
16 3f27_D Transcription factor SO 99.8 4E-20 1.4E-24 111.9 5.5 55 34-89 3-57 (83)
17 4euw_A Transcription factor SO 99.8 6.5E-20 2.2E-24 116.3 6.3 58 31-89 23-80 (106)
18 2gzk_A Sex-determining region 99.8 7.3E-20 2.5E-24 122.2 6.8 61 28-89 79-139 (159)
19 4a3n_A Transcription factor SO 99.8 4E-20 1.4E-24 108.6 4.8 53 36-89 1-53 (71)
20 1wxl_A Single-strand recogniti 99.8 8.4E-20 2.9E-24 108.4 5.9 52 35-89 1-52 (73)
21 1i11_A Transcription factor SO 99.8 6.8E-20 2.3E-24 110.6 5.4 54 35-89 2-55 (81)
22 1gt0_D Transcription factor SO 99.8 8.6E-20 2.9E-24 109.9 5.7 53 36-89 1-53 (80)
23 2lef_A LEF-1 HMG, protein (lym 99.8 1.4E-19 4.7E-24 110.5 6.2 53 36-89 1-53 (86)
24 3u2b_C Transcription factor SO 99.8 9.6E-20 3.3E-24 109.2 5.3 53 36-89 1-53 (79)
25 3nm9_A HMG-D, high mobility gr 99.8 1E-19 3.6E-24 108.0 5.2 52 35-89 1-52 (73)
26 1ckt_A High mobility group 1 p 99.8 9.4E-20 3.2E-24 107.3 4.9 52 37-89 1-54 (71)
27 2yrq_A High mobility group pro 99.8 3.7E-19 1.3E-23 120.4 6.7 60 29-89 93-152 (173)
28 2yrq_A High mobility group pro 99.8 8.6E-19 2.9E-23 118.6 7.3 63 27-89 5-68 (173)
29 1v64_A Nucleolar transcription 99.8 6E-19 2E-23 112.3 5.1 58 27-89 6-64 (108)
30 2yuk_A Myeloid/lymphoid or mix 99.8 9.4E-21 3.2E-25 117.8 -3.6 55 30-89 15-71 (90)
31 2cto_A Novel protein; high mob 99.7 8.6E-19 2.9E-23 109.4 2.5 56 31-89 4-62 (93)
32 3fgh_A Transcription factor A, 99.7 1.8E-18 6.2E-23 101.0 2.7 49 36-89 1-49 (67)
33 1l8y_A Upstream binding factor 99.7 1.8E-17 6.1E-22 103.1 5.1 52 36-89 3-54 (91)
34 3tmm_A Transcription factor A, 99.7 1.1E-17 3.8E-22 118.6 3.5 58 31-89 35-92 (238)
35 3tq6_A Transcription factor A, 99.7 2.1E-17 7.1E-22 115.7 4.5 55 34-89 6-60 (214)
36 1v63_A Nucleolar transcription 99.7 4.9E-17 1.7E-21 102.3 5.5 54 33-89 4-57 (101)
37 2gzk_A Sex-determining region 99.6 7.2E-16 2.5E-20 102.7 5.9 54 35-89 2-55 (159)
38 3tq6_A Transcription factor A, 99.6 2.7E-17 9.2E-22 115.1 -3.5 56 29-89 106-161 (214)
39 3tmm_A Transcription factor A, 99.6 4.9E-17 1.7E-21 115.3 -3.9 56 29-89 138-193 (238)
40 2qgu_A Probable signal peptide 61.1 2 6.7E-05 29.2 0.3 28 61-89 70-98 (211)
41 2yua_A Williams-beuren syndrom 34.6 66 0.0023 18.6 4.1 36 49-85 35-75 (99)
42 3mhp_C TIC62_peptide, ferredox 34.4 6.2 0.00021 18.4 -0.5 11 38-48 2-12 (26)
43 1hdj_A Human HSP40, HDJ-1; mol 27.9 79 0.0027 17.2 3.9 36 50-85 22-60 (77)
44 2o37_A Protein SIS1; HSP40, J- 26.9 61 0.0021 18.5 3.0 37 49-85 26-63 (92)
45 2ys8_A RAB-related GTP-binding 25.8 81 0.0028 17.9 3.4 37 50-86 46-85 (90)
46 2och_A Hypothetical protein DN 25.4 63 0.0021 17.5 2.7 35 50-85 27-63 (73)
47 2dn9_A DNAJ homolog subfamily 23.0 55 0.0019 17.9 2.2 36 49-85 25-65 (79)
48 2ctp_A DNAJ homolog subfamily 20.2 84 0.0029 17.1 2.6 35 50-85 26-64 (78)
No 1
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.89 E-value=2.6e-23 Score=128.35 Aligned_cols=64 Identities=28% Similarity=0.446 Sum_probs=59.9
Q ss_pred ccccCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 25 ~k~~kk~~~dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
+++++++.+||+.|+||+|||||||+++|..|..+||+ +++.||+++||++|++|+++||++|+
T Consensus 8 k~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~ 71 (90)
T 1wgf_A 8 KPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPE-LSESELTRLLARMWNDLSEKKKAKYK 71 (90)
T ss_dssp SSCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44556677899999999999999999999999999999 99999999999999999999999996
No 2
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=1.2e-22 Score=127.98 Aligned_cols=64 Identities=25% Similarity=0.493 Sum_probs=59.3
Q ss_pred ccccCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 25 GRKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 25 ~k~~kk~~~dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
..+++++.+||+.|+||+||||||++++|..|..+||+ +++.||+++||++|++|+++||++|+
T Consensus 5 ~~~~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~ 68 (102)
T 2co9_A 5 SSGKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPN-ATFGEVSKIVASMWDGLGEEQKQVYK 68 (102)
T ss_dssp CCCSCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTT-SCHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 34445677899999999999999999999999999999 99999999999999999999999995
No 3
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=4.4e-22 Score=121.71 Aligned_cols=62 Identities=37% Similarity=0.543 Sum_probs=57.2
Q ss_pred ccCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhhhcccc
Q 034575 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 27 ~~kk~~~dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~--~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
++++..+||+.|+||+||||+|++++|..+..+||+ ++ +.||+++||++|++|+++||.+|+
T Consensus 5 ~~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~-~~~~~~eisk~lg~~Wk~ls~~eK~~y~ 68 (86)
T 2eqz_A 5 SSGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPE-VPVNFAEFSKKCSERWKTMSGKEKSKFD 68 (86)
T ss_dssp CSSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTT-SCCCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCC-CCCcHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 344567899999999999999999999999999999 75 799999999999999999999996
No 4
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.86 E-value=4.1e-22 Score=122.21 Aligned_cols=59 Identities=32% Similarity=0.585 Sum_probs=56.7
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 30 k~~~dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
+..+||+.|+||+||||||++++|..+..+||+ +++.||+++||++|++|+++||++|+
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~ 68 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPG-KDNRAISVILGDRWKKMKNEERRMYT 68 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 467899999999999999999999999999999 99999999999999999999999996
No 5
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.86 E-value=2e-22 Score=126.53 Aligned_cols=60 Identities=32% Similarity=0.478 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 29 kk~~~dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
+++.+||+.|+||+|||||||+++|..+..+||+ +++.||+++||++|++||++||++|+
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~ 61 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPE-MSNLDLTKILSKKYKELPEKKKMKYI 61 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTT-SCSHHHHHHHHHHHHHSCSTTHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4567899999999999999999999999999999 99999999999999999999999996
No 6
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=8e-22 Score=120.21 Aligned_cols=55 Identities=24% Similarity=0.347 Sum_probs=53.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhhhcccc
Q 034575 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKS-VAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 34 dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~-~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
+++.||||+|||||||+++|..|..+||+ ++ ++||+++||++|++|+++||++|+
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~-~~~~~eisK~lge~Wk~ls~eeK~~y~ 57 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPD-FSDEADIIKEGMIRFRVLSTEERKVWA 57 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTT-CCSHHHHHHHHHHHHSSSCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CchhHHHHHHHHHHHHcCCHHHHHHHH
Confidence 68899999999999999999999999999 87 999999999999999999999996
No 7
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.85 E-value=9.5e-22 Score=117.61 Aligned_cols=57 Identities=42% Similarity=0.692 Sum_probs=55.0
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 32 ~~dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
.+||+.|+||+||||+|++++|..+..+||+ +++.+|+++||++|++||++||.+|+
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~ 57 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYE 57 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHSCGGGSHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3799999999999999999999999999999 99999999999999999999999986
No 8
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.85 E-value=2.4e-22 Score=125.39 Aligned_cols=63 Identities=37% Similarity=0.599 Sum_probs=59.0
Q ss_pred cccCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhhhcccc
Q 034575 26 RKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 26 k~~kk~~~dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~--~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
+++++..+||+.|+||+||||||++++|..+..+||+ ++ +.||+++||++|++|+++||++|+
T Consensus 11 ~~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~-~~~~~~eisk~lg~~Wk~ls~eeK~~Y~ 75 (97)
T 2lhj_A 11 RRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPE-IAKDVAAIGKMIGAAWNALSDEEKKPYE 75 (97)
T ss_dssp CCTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTT-STTCSSHHHHHHHHTSSSSCSTTTSSSS
T ss_pred cccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3446677899999999999999999999999999999 88 999999999999999999999996
No 9
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.85 E-value=1.7e-22 Score=125.41 Aligned_cols=62 Identities=34% Similarity=0.601 Sum_probs=58.6
Q ss_pred ccCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 27 ~~kk~~~dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
++++..+||+.|+||+||||||++++|..+..+||+ +++.||+++||++|++||++||.+|+
T Consensus 10 ~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~ 71 (93)
T 1cg7_A 10 RTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPD-ITFGQVGKKLGEKWKALTPEEKQPYE 71 (93)
T ss_dssp CCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTT-SCHHHHTTTHHHHHHTTHHHHHHHHH
T ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 455677899999999999999999999999999999 99999999999999999999999995
No 10
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.84 E-value=2.7e-21 Score=119.57 Aligned_cols=57 Identities=26% Similarity=0.506 Sum_probs=55.2
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 32 ~~dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
.+||++|+||+||||+|++++|..|..+||+ +++.+|+++||++|++|+++||++|+
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~Y~ 58 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPD-LPFPEITKMLGAEWSKLQPAEKQRYL 58 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4799999999999999999999999999999 99999999999999999999999995
No 11
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.84 E-value=1.9e-21 Score=116.00 Aligned_cols=55 Identities=25% Similarity=0.458 Sum_probs=51.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 34 dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
||+.|+||+||||||++++|..+..+||+ +++.||+++||++|++||++||++|+
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~ 55 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFF 55 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSC-CSSSHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHhHHHhCCHHHHHHHH
Confidence 68999999999999999999999999999 99999999999999999999999985
No 12
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=9.5e-21 Score=117.14 Aligned_cols=57 Identities=26% Similarity=0.355 Sum_probs=54.8
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 32 ~~dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
..+|++||||+||||+|++++|..|+.+||+ +++.||+++||++|++|+++||++|+
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~ 58 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPK-TSLEDATLQIEELWKTLSEEEKLKYE 58 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCS-SCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3689999999999999999999999999999 99999999999999999999999995
No 13
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.82 E-value=1.9e-20 Score=114.22 Aligned_cols=55 Identities=25% Similarity=0.457 Sum_probs=53.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 34 dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
.|+.|+||+||||+||+++|..|..+||+ +++.||+++||++|++||++||.+|+
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~ 55 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFF 55 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTT-SCHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 47899999999999999999999999999 99999999999999999999999985
No 14
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.82 E-value=1.3e-20 Score=114.08 Aligned_cols=56 Identities=18% Similarity=0.375 Sum_probs=54.2
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 33 ~dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
.|++.|+||+||||||++++|..+..+||+ +++.+|+++||++|++||++||++|+
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~ 58 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPR-LDNRGATKILADWWAVLDPKEKQKYT 58 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSS-SCTTHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 578999999999999999999999999999 99999999999999999999999985
No 15
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.82 E-value=3.1e-21 Score=117.06 Aligned_cols=57 Identities=35% Similarity=0.592 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhhhcccc
Q 034575 32 AKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 32 ~~dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~--~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
.+||+.|+||+||||+||+++|..+..+||+ ++ +.||+++||++|++|+++||.+|+
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~-~~~~~~eisk~lg~~Wk~ls~~eK~~y~ 60 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPD-ASVNFSEFSKKCSERWKTMSAKEKGKFE 60 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTT-TCCCSSSSHHHHHHHHTTSCTTHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCCcHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4799999999999999999999999999999 75 599999999999999999999995
No 16
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.80 E-value=4e-20 Score=111.89 Aligned_cols=55 Identities=24% Similarity=0.444 Sum_probs=50.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 34 dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
.++.|+||+|||||||+++|..+..+||+ +++.||+++||++|++|+++||.+|+
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~ 57 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPD-LHNAELSKMLGKSWKALTLAEKRPFV 57 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 46789999999999999999999999999 99999999999999999999999986
No 17
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.80 E-value=6.5e-20 Score=116.26 Aligned_cols=58 Identities=24% Similarity=0.438 Sum_probs=52.0
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 31 ~~~dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
..+|++.|+||+|||||||+++|..+..+||+ +++.||+++||++|++|+++||++|+
T Consensus 23 ~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~Y~ 80 (106)
T 4euw_A 23 SSKNKPHVKRPMNAFMVWAQAARRKLADQYPH-LHNAELSKTLGKLWRLLNESEKRPFV 80 (106)
T ss_dssp -----CCCCCCCCHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred ccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45788999999999999999999999999999 99999999999999999999999996
No 18
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.80 E-value=7.3e-20 Score=122.18 Aligned_cols=61 Identities=41% Similarity=0.664 Sum_probs=57.7
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 28 SGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 28 ~kk~~~dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
+++..+||+.|+||+||||+||+++|..+..+||+ ++++||+++||++|++|+++||++|+
T Consensus 79 ~kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~-~~~~ei~k~lg~~Wk~ls~~eK~~y~ 139 (159)
T 2gzk_A 79 TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYE 139 (159)
T ss_dssp CGGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSC-CCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred ccccccccccccccccccchhhHhhHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34567899999999999999999999999999999 99999999999999999999999996
No 19
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.80 E-value=4e-20 Score=108.62 Aligned_cols=53 Identities=25% Similarity=0.469 Sum_probs=48.1
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 36 ~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
+.|+||+||||+|++++|..+..+||+ +++.+|+++||++|++||++||.+|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~ 53 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPD-LHNAELSKMLGKSWKALTLAEKRPFV 53 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTT-SCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 469999999999999999999999999 99999999999999999999999986
No 20
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.80 E-value=8.4e-20 Score=108.41 Aligned_cols=52 Identities=31% Similarity=0.620 Sum_probs=50.0
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 35 p~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
|++|+||+||||+|++++|..+..+||+ +++.||+++||++|++| +||.+|+
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~l--~eK~~y~ 52 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPG-IKVTEIAKKGGEMWKEL--KDKSKWE 52 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTT-CCHHHHHHHHHHHHHTC--TTHHHHH
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhh--HhhHHHH
Confidence 7899999999999999999999999999 99999999999999999 8898885
No 21
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.80 E-value=6.8e-20 Score=110.62 Aligned_cols=54 Identities=24% Similarity=0.429 Sum_probs=51.4
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 35 p~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
++.|+||+||||||++++|..+..+||+ +++.||+++||++|++|+++||.+|+
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~ 55 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPD-MHNSNISKILGSRWKAMTNLEKQPYY 55 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSS-CCHHHHHHHHHHHHTTSCSGGGHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHhhhhhCCHHHHHHHH
Confidence 4689999999999999999999999999 99999999999999999999999985
No 22
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.79 E-value=8.6e-20 Score=109.85 Aligned_cols=53 Identities=28% Similarity=0.527 Sum_probs=51.2
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 36 ~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
+.|+||+||||+|++++|..+..+||+ +++.||+++||++|++||++||.+|+
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~eeK~~y~ 53 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPK-MHNSEISKRLGAEWKLLSETEKRPFI 53 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTT-SCHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 479999999999999999999999999 99999999999999999999999995
No 23
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.79 E-value=1.4e-19 Score=110.48 Aligned_cols=53 Identities=25% Similarity=0.466 Sum_probs=51.0
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 36 ~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
..|+||+||||||++++|..+..+||+ ++++||+++||++|++||++||++|+
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~-~~~~eisk~lg~~Wk~ls~eeK~~y~ 53 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTL-KESAAINQILGRRWHALSREEQAKYY 53 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSC-CCHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 369999999999999999999999999 99999999999999999999999995
No 24
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.79 E-value=9.6e-20 Score=109.18 Aligned_cols=53 Identities=25% Similarity=0.419 Sum_probs=51.2
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 36 ~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
+.|+||+||||||++++|..+..+||+ +++.||+++||++|++|+++||.+|+
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~~eK~~y~ 53 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPD-MHNAEISKRLGKRWKLLKDSDKIPFI 53 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTT-SCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcC-CCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 479999999999999999999999999 99999999999999999999999986
No 25
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.79 E-value=1e-19 Score=108.00 Aligned_cols=52 Identities=37% Similarity=0.685 Sum_probs=49.3
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 35 p~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
.++||||+||||+||+++|..+..+||+ +++.||+++||++|++|++ |++|+
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~-~~~~eisk~lg~~Wk~ls~--K~~y~ 52 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPG-IKVTEVAKRGGELWRAMKD--KSEWE 52 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHHHCSC--CHHHH
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHcCCc--hHHHH
Confidence 3689999999999999999999999999 9999999999999999997 88885
No 26
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.79 E-value=9.4e-20 Score=107.27 Aligned_cols=52 Identities=35% Similarity=0.588 Sum_probs=49.4
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhhhcccc
Q 034575 37 KPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 37 ~PKrP~say~lf~~~~r~~~~~~~P~~~~--~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
+||||+||||+|++++|..+..+||+ ++ +.||+++||++|++|+++||.+|+
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~-~~~~~~eisk~lg~~Wk~ls~~eK~~y~ 54 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPD-ASVNFSEFSKKCSERWKTMSAKEKGKFE 54 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTT-CCCCHHHHHHHHHHHHHTCCTTTSHHHH
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCC-CCCcHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 59999999999999999999999999 75 599999999999999999999985
No 27
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.7e-19 Score=120.36 Aligned_cols=60 Identities=42% Similarity=0.667 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 29 kk~~~dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
+++.+||+.|+||+|||||||+++|..+..+||+ +++.||+++||++|++|+++||++|+
T Consensus 93 kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~-~~~~ei~k~lg~~Wk~ls~~eK~~y~ 152 (173)
T 2yrq_A 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQPYE 152 (173)
T ss_dssp SCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSS-SCHHHHHHHHHHHHHHSCGGGHHHHH
T ss_pred cccccCCccccCcccHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4556799999999999999999999999999999 99999999999999999999999995
No 28
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=8.6e-19 Score=118.57 Aligned_cols=63 Identities=33% Similarity=0.574 Sum_probs=57.7
Q ss_pred ccCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 27 KSGKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKN-KSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 27 ~~kk~~~dp~~PKrP~say~lf~~~~r~~~~~~~P~~-~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
+++....||+.|+||+||||||++++|..|..+||+. +++.||+++||++|++|+++||++|+
T Consensus 5 ~~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~ 68 (173)
T 2yrq_A 5 SSGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 68 (173)
T ss_dssp SCSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3445678999999999999999999999999999994 38999999999999999999999985
No 29
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.76 E-value=6e-19 Score=112.34 Aligned_cols=58 Identities=16% Similarity=0.239 Sum_probs=53.2
Q ss_pred ccCCCCCCCCCC-CCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 27 KSGKAAKDPNKP-KRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 27 ~~kk~~~dp~~P-KrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
.+.++.+|++.| |||+||||+||+++|..+. + +++.||+++||++|++|+++||++|+
T Consensus 6 ~~~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~-~~~~eisk~lg~~Wk~Ls~~eK~~Y~ 64 (108)
T 1v64_A 6 SGQLKDKFDGRPTKPPPNSYSLYCAELMANMK----D-VPSTERMVLCSQQWKLLSQKEKDAYH 64 (108)
T ss_dssp SCCSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----T-SCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHHHHh----C-CCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 445667899999 9999999999999999887 6 89999999999999999999999996
No 30
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.75 E-value=9.4e-21 Score=117.77 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=51.7
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhhhcccc
Q 034575 30 KAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKS--VAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 30 k~~~dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~--~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
+..+||++|+||+|||||||+++|..|+.+||+ ++ ++||+ ++|++|+++||++|+
T Consensus 15 k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~-~s~~~~eIs----e~Wk~ls~eeK~pY~ 71 (90)
T 2yuk_A 15 KWEKEEALGEMATVAPVLYTNINFPNLKEEFPD-WTTRVKQIA----KLWRKASSQERAPYV 71 (90)
T ss_dssp HHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCS-HHHHHHHHH----HHHHHSCHHHHHHHH
T ss_pred hccCCCCCCCCCccHHHHHHHHhHHHHHHHCcC-ccchHHHHH----HHHHcCCHHHHHHHH
Confidence 445699999999999999999999999999999 98 99998 999999999999996
No 31
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=8.6e-19 Score=109.40 Aligned_cols=56 Identities=18% Similarity=0.273 Sum_probs=52.3
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHHhcCChhhhcccc
Q 034575 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAG---GEKWKSMSEAVSGLVL 89 (90)
Q Consensus 31 ~~~dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l---~~~W~~ls~~eK~~Ye 89 (90)
...+++.||||+|||||||+++|..++.+ + +++.||++.| |++|++|+++||++|+
T Consensus 4 ~~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~-~~~~eisK~l~~cGe~Wk~ls~eEK~pYe 62 (93)
T 2cto_A 4 GSSGMPNRKASRNAYYFFVQEKIPELRRR--G-LPVARVADAIPYCSSDWALLREEEKEKYA 62 (93)
T ss_dssp CCCCCCCCCSSCCHHHHHHHTTHHHHHHH--T-CCCSSHHHHTGGGHHHHHHSCHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHc--C-CCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35678999999999999999999999988 6 8999999999 9999999999999996
No 32
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.72 E-value=1.8e-18 Score=100.98 Aligned_cols=49 Identities=37% Similarity=0.566 Sum_probs=45.0
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 36 ~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
|.||||+|||++|++++|..+..+|| +||++.||++|++||++||.+|+
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~y~ 49 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYI 49 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH-----HHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHhhCCHHHHHHHH
Confidence 57999999999999999999986555 59999999999999999999996
No 33
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.69 E-value=1.8e-17 Score=103.13 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=50.4
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 36 NKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 36 ~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
+.|+||+|||++|+++.|..+..++|+ +++||++.||++|++|+++||++|+
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~--~~~evsK~lGe~Wk~ls~~eK~pye 54 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN--DRVKALKAMEMTWNNMEKKEKLMWI 54 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS--THHHHHHHHHHHHHTTGGGHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 689999999999999999999999998 8999999999999999999999996
No 34
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.68 E-value=1.1e-17 Score=118.65 Aligned_cols=58 Identities=16% Similarity=0.389 Sum_probs=55.5
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 31 AAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 31 ~~~dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
...||+.|++|+||||||++++|..|..+||+ +++.||+++||++|++|+++||.+|+
T Consensus 35 s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~-~~~~eisk~lge~Wk~Ls~~EK~~y~ 92 (238)
T 3tmm_A 35 SSVLASCPKKPVSSYLRFSKEQLPIFKAQNPD-AKTTELIRRIAQRWRELPDSKKKIYQ 92 (238)
T ss_dssp CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTT-SCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 35689999999999999999999999999999 99999999999999999999999996
No 35
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.68 E-value=2.1e-17 Score=115.69 Aligned_cols=55 Identities=16% Similarity=0.407 Sum_probs=53.0
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 34 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 34 dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
+|++|+||+|||||||+++|..+..+||+ +++.||+++||++|++||++||.+|+
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~-~~~~eisk~lge~Wk~Ls~~EK~~y~ 60 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPD-AKTTELIRRIAQRWRELPDSKKKIYQ 60 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHccCHHhhhHHH
Confidence 47899999999999999999999999999 99999999999999999999999996
No 36
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.68 E-value=4.9e-17 Score=102.32 Aligned_cols=54 Identities=13% Similarity=0.216 Sum_probs=47.3
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 33 KDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 33 ~dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
.+..+||||+|||||||++++. ..++++ +++.||++.||++|++|+++||++|+
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~-~~~~eisK~lge~Wk~ls~~eK~~Y~ 57 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNH-LPLKERMVEIGSRWQRISQSQKEHYK 57 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTT-SCHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCC-CCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3567899999999999999975 345566 78999999999999999999999996
No 37
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.61 E-value=7.2e-16 Score=102.71 Aligned_cols=54 Identities=26% Similarity=0.484 Sum_probs=52.1
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 35 PNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 35 p~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
++.|+||++|||+|+++.+..|..+||+ +++.||+++||++|++||++||.+|+
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~-~~~~eisk~lg~~Wk~ls~~eK~~y~ 55 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPFF 55 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSS-CCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHhhHHHhccHH
Confidence 6789999999999999999999999999 99999999999999999999999985
No 38
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.58 E-value=2.7e-17 Score=115.12 Aligned_cols=56 Identities=34% Similarity=0.464 Sum_probs=49.8
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 29 kk~~~dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
++..+||+.|+||+||||+||+++|..+..++| .+|++.||++|++|+++||++|+
T Consensus 106 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~Y~ 161 (214)
T 3tq6_A 106 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYI 161 (214)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSSCSSH-----HHHHHHHHHHHHTCCHHHHHHHH
T ss_pred hhhhccccCcccccchhhhhHHHHHHhhccCCH-----HHHHHHHHHHHHcCCHHHHHHHH
Confidence 445679999999999999999999998865444 48999999999999999999996
No 39
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.56 E-value=4.9e-17 Score=115.35 Aligned_cols=56 Identities=34% Similarity=0.464 Sum_probs=49.9
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhhhcccc
Q 034575 29 GKAAKDPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 29 kk~~~dp~~PKrP~say~lf~~~~r~~~~~~~P~~~~~~eisk~l~~~W~~ls~~eK~~Ye 89 (90)
++..+||+.|+||+|||||||+++|..+..+|| .+|++.||++|++|+++||++|+
T Consensus 138 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~Y~ 193 (238)
T 3tmm_A 138 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYI 193 (238)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSH-----HHHHHHHHHHHHTCCTTTTHHHH
T ss_pred hhhhcccCCCCCCCcHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHHhCCHHHHHHHH
Confidence 445689999999999999999999998875554 48999999999999999999996
No 40
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=61.05 E-value=2 Score=29.23 Aligned_cols=28 Identities=11% Similarity=0.260 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHH-HHHHHhcCChhhhcccc
Q 034575 61 PKNKSVAAVGKA-GGEKWKSMSEAVSGLVL 89 (90)
Q Consensus 61 P~~~~~~eisk~-l~~~W~~ls~~eK~~Ye 89 (90)
|- .++..+++. ||.-|+.+++++++.|+
T Consensus 70 p~-~D~~~~a~~vLG~~wr~at~~Qr~~F~ 98 (211)
T 2qgu_A 70 PR-ADFKRTTQIAMGRFWSQATPEQQQQIQ 98 (211)
T ss_dssp GG-BCHHHHHHHHHGGGTTTSCHHHHHHHH
T ss_pred hh-cCHHHHHHHHHhHhHhhCCHHHHHHHH
Confidence 44 577777766 68999999999998774
No 41
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.62 E-value=66 Score=18.61 Aligned_cols=36 Identities=14% Similarity=0.105 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCChhhh
Q 034575 49 MEEFREQYKKDHPKNKS-----VAAVGKAGGEKWKSMSEAVS 85 (90)
Q Consensus 49 ~~~~r~~~~~~~P~~~~-----~~eisk~l~~~W~~ls~~eK 85 (90)
...+|..+..-||+ .. ..+....|.+.|..|++.++
T Consensus 35 k~ayr~l~~~~HPD-k~~~~~~a~~~f~~i~~Ay~~L~d~~~ 75 (99)
T 2yua_A 35 KAAYYRQCFLYHPD-RNSGSAEAAERFTRISQAYVVLGSATL 75 (99)
T ss_dssp HHHHHHHHHHSCTT-TCSSCSHHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHCcC-CCCCCHHHHHHHHHHHHHHHHHCCHHH
Confidence 35566677788898 43 36788899999999986654
No 42
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=34.45 E-value=6.2 Score=18.42 Aligned_cols=11 Identities=18% Similarity=0.600 Sum_probs=8.0
Q ss_pred CCCCCChHHHH
Q 034575 38 PKRPASAFFVF 48 (90)
Q Consensus 38 PKrP~say~lf 48 (90)
..||+++|..|
T Consensus 2 ~~rPlSpy~~Y 12 (26)
T 3mhp_C 2 TEQPLSPYTAY 12 (26)
T ss_dssp CCCCSSTTTTB
T ss_pred CccccCccccc
Confidence 45788888765
No 43
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=27.89 E-value=79 Score=17.19 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=25.6
Q ss_pred HHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChhhh
Q 034575 50 EEFREQYKKDHPKNK---SVAAVGKAGGEKWKSMSEAVS 85 (90)
Q Consensus 50 ~~~r~~~~~~~P~~~---~~~eisk~l~~~W~~ls~~eK 85 (90)
..++..+..-||+.. ...+....|.+.|..|++.++
T Consensus 22 ~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~ 60 (77)
T 1hdj_A 22 RAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRK 60 (77)
T ss_dssp HHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHH
Confidence 455666677788722 256788899999999987654
No 44
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=26.88 E-value=61 Score=18.51 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhhh
Q 034575 49 MEEFREQYKKDHPKNK-SVAAVGKAGGEKWKSMSEAVS 85 (90)
Q Consensus 49 ~~~~r~~~~~~~P~~~-~~~eisk~l~~~W~~ls~~eK 85 (90)
...++..+..-||+.. ...+..+.|.+.|..|++.++
T Consensus 26 k~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~ 63 (92)
T 2o37_A 26 KKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQK 63 (92)
T ss_dssp HHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHH
Confidence 3556666778889832 345788889999999887654
No 45
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.84 E-value=81 Score=17.93 Aligned_cols=37 Identities=14% Similarity=0.101 Sum_probs=27.1
Q ss_pred HHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChhhhc
Q 034575 50 EEFREQYKKDHPKNK---SVAAVGKAGGEKWKSMSEAVSG 86 (90)
Q Consensus 50 ~~~r~~~~~~~P~~~---~~~eisk~l~~~W~~ls~~eK~ 86 (90)
..+|..+..-||+.. ...+....|.+.|..|++..+.
T Consensus 46 ~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R 85 (90)
T 2ys8_A 46 KAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKS 85 (90)
T ss_dssp HHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccc
Confidence 556666778888832 3667888899999998877653
No 46
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=25.44 E-value=63 Score=17.46 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhhh
Q 034575 50 EEFREQYKKDHPKNKSV--AAVGKAGGEKWKSMSEAVS 85 (90)
Q Consensus 50 ~~~r~~~~~~~P~~~~~--~eisk~l~~~W~~ls~~eK 85 (90)
..++..+..-||+ ... .+....|.+-|..|++.++
T Consensus 27 ~ayr~l~~~~HPD-~~~~~~~~f~~i~~Ay~~L~d~~~ 63 (73)
T 2och_A 27 KAYRKMALKFHPD-KNPDGAEQFKQISQAYEVLSDEKK 63 (73)
T ss_dssp HHHHHHHHHTCTT-TCTTCHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHHHCcC-CCcCHHHHHHHHHHHHHHHCCHHH
Confidence 4556666777888 432 4778889999999886654
No 47
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.02 E-value=55 Score=17.94 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCChhhh
Q 034575 49 MEEFREQYKKDHPKNKS-----VAAVGKAGGEKWKSMSEAVS 85 (90)
Q Consensus 49 ~~~~r~~~~~~~P~~~~-----~~eisk~l~~~W~~ls~~eK 85 (90)
...++..+..-||+ .. ..+....|.+-|..|++.++
T Consensus 25 k~ayr~l~~~~HPD-~~~~~~~a~~~f~~i~~Ay~~L~d~~~ 65 (79)
T 2dn9_A 25 KKAYYQLAKKYHPD-TNKDDPKAKEKFSQLAEAYEVLSDEVK 65 (79)
T ss_dssp HHHHHHHHHHTCTT-TCSSCTTHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHHCcC-CCCCCHHHHHHHHHHHHHHHHHCCHHH
Confidence 35556666777888 43 35778889999998886543
No 48
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.23 E-value=84 Score=17.11 Aligned_cols=35 Identities=26% Similarity=0.309 Sum_probs=24.7
Q ss_pred HHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhhh
Q 034575 50 EEFREQYKKDHPKNKS----VAAVGKAGGEKWKSMSEAVS 85 (90)
Q Consensus 50 ~~~r~~~~~~~P~~~~----~~eisk~l~~~W~~ls~~eK 85 (90)
..++..+..-||+ .. ..+....|.+.|..|++.++
T Consensus 26 ~ayr~l~~~~HPD-k~~~~~~~~~f~~i~~Ay~~L~d~~~ 64 (78)
T 2ctp_A 26 KAYRRLALKFHPD-KNHAPGATEAFKAIGTAYAVLSNPEK 64 (78)
T ss_dssp HHHHHHHTTSCTT-TCSSHHHHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHHHCcC-CCCCccHHHHHHHHHHHHHHHCCHHH
Confidence 4455566677888 43 45677889999999886653
Done!